AlfalfaGEDB | MS.gene002752

M. sativa cultivar XinJiangDaYe / MS.gene002752

KEGG: K15032
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002752.t1	XP_003593962.1	80.6	170	31	1	1	168	196	365	3.60E-72	281.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002752.t1	G7IPZ5	80.6	170	31	1	1	168	196	365	2.6e-72	281.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene002752.t1	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002752.t1	MTR_2g019810	80.588	170	31	1	1	168	196	365	3.26e-98	289
MS.gene002752.t1	MTR_2g019840	73.964	169	42	1	1	167	208	376	4.13e-86	259
MS.gene002752.t1	MTR_2g436400	50.625	160	75	3	11	166	222	381	9.68e-49	162
MS.gene002752.t1	MTR_2g437960	46.524	187	91	4	1	178	216	402	1.37e-46	157
MS.gene002752.t1	MTR_2g437960	46.524	187	91	4	1	178	216	402	1.73e-46	158
MS.gene002752.t1	MTR_2g436460	47.429	175	82	5	1	165	205	379	2.02e-45	154
MS.gene002752.t1	MTR_2g437080	50.000	160	76	3	11	166	215	374	8.67e-45	152
MS.gene002752.t1	MTR_4g119550	48.125	160	79	3	11	166	225	384	4.10e-44	151
MS.gene002752.t1	MTR_2g437090	48.125	160	79	3	11	166	3	162	5.10e-44	144
MS.gene002752.t1	MTR_2g437030	50.000	160	76	3	11	166	301	460	5.34e-44	152

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002752.t1	AT5G07900	39.103	156	90	3	9	159	244	399	4.56e-31	117
MS.gene002752.t1	AT1G21150	30.625	160	106	3	9	163	195	354	1.14e-20	88.2
MS.gene002752.t1	AT1G21150	30.625	160	106	3	9	163	231	390	1.87e-20	87.8
MS.gene002752.t1	AT1G21150	30.625	160	106	3	9	163	295	454	2.32e-20	88.2
MS.gene002752.t1	AT1G62010	26.341	205	104	7	9	172	207	405	1.50e-12	65.5
MS.gene002752.t1	AT1G61990	25.773	194	100	7	9	159	216	408	2.73e-12	64.7
MS.gene002752.t1	AT1G61990	25.773	194	100	7	9	159	216	408	2.73e-12	64.7
MS.gene002752.t1	AT1G61980	26.804	194	98	7	9	159	223	415	3.55e-12	64.3
MS.gene002752.t1	AT1G61980	26.804	194	98	7	9	159	223	415	3.55e-12	64.3
MS.gene002752.t1	AT1G61980	26.804	194	98	7	9	159	223	415	3.55e-12	64.3

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Find 34 sgRNAs with CRISPR-Local

Find 40 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCACCATAACAAGCAT+CGG	0.567644	2.1:-67410349	None:intergenic
AATCTTCAAAGCAACGCAAA+GGG	0.571909	2.1:+67410578	MS.gene002752:CDS
ACAGATGCCAACATACACCA+TGG	0.670800	2.1:-67410253	None:intergenic
ACATCCTCAGAGACTTTGAA+AGG	0.652583	2.1:-67410448	None:intergenic
ACTGCCTTCTCAAATACTGC+AGG	0.547454	2.1:-67410070	None:intergenic
AGAGAAAAGGGTTATTCCAA+AGG	0.536086	2.1:+67410372	MS.gene002752:CDS
AGATGTTTCAACTTTCAATA+AGG	0.340961	2.1:+67410543	MS.gene002752:CDS
AGATTAATGCGTATAAGAAA+TGG	0.381339	2.1:+67410188	MS.gene002752:CDS
AGATTAGTCCAAAATCCGTA+TGG	0.549136	2.1:+67410158	MS.gene002752:CDS
AGCATCCTTAATCAAACCTT+TGG	0.408692	2.1:-67410413	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTAATCTTCCTTTCCCATA+CGG	-	chr2.1:67410176-67410195	None:intergenic	30.0%
TATGGTGAGTTTAGAGAAAA+GGG	+	chr2.1:67410360-67410379	MS.gene002752:CDS	30.0%
TCAATCCAAAGGTTTGATTA+AGG	+	chr2.1:67410408-67410427	MS.gene002752:CDS	30.0%
TTATGGTGAGTTTAGAGAAA+AGG	+	chr2.1:67410359-67410378	MS.gene002752:CDS	30.0%
TTTGATTAAGGATGCTAAGT+TGG	+	chr2.1:67410420-67410439	MS.gene002752:CDS	30.0%
AAACTCACCATAACAAGCAT+CGG	-	chr2.1:67410352-67410371	None:intergenic	35.0%
AATCTTCAAAGCAACGCAAA+GGG	+	chr2.1:67410578-67410597	MS.gene002752:CDS	35.0%
AGAGAAAAGGGTTATTCCAA+AGG	+	chr2.1:67410372-67410391	MS.gene002752:CDS	35.0%
AGCATCCTTAATCAAACCTT+TGG	-	chr2.1:67410416-67410435	None:intergenic	35.0%
ACATCCTCAGAGACTTTGAA+AGG	-	chr2.1:67410451-67410470	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	67410055	67410633	67410055	ID=MS.gene002752
chr2.1	mRNA	67410055	67410633	67410055	ID=MS.gene002752.t1;Parent=MS.gene002752
chr2.1	exon	67410055	67410633	67410055	ID=MS.gene002752.t1.exon1;Parent=MS.gene002752.t1
chr2.1	CDS	67410055	67410633	67410055	ID=cds.MS.gene002752.t1;Parent=MS.gene002752.t1

Gene Sequence

>MS.gene002752

ATGCTCTCTAAGAAACCTGCAGTATTTGAGAAGGCAGTTTTGGAAGTAAAACAATTAGGATTCAATCCTAACAATACGTTTTTCCTTATCGCACTACATGCTAAGATTAGTCCAAAATCCGTATGGGAAAGGAAGATTAATGCGTATAAGAAATGGGGTTGGTCTGATGAAGTTATTGTCTCAGCATTTTTGAAGTATCCATGGTGTATGTTGGCATCTGTGGAAAAAATTGAAGCAGTGATGCAGTTTTTTGTCAATCACATGGGTTGGGAGTCTAATGTACTTGCCAAACATCCGATGCTTGTTATGGTGAGTTTAGAGAAAAGGGTTATTCCAAAGGTTTTGAAATTTCTTCAATCCAAAGGTTTGATTAAGGATGCTAAGTTGGCTGCACCTTTCAAAGTCTCTGAGGATGTGTTTTTGAAGAGATTTGTGAATTGCTTCGAGGAAGAAGCATCTCAGCTGTTGAAGTTGTACGAAGAGAAAAGAGATGTTTCAACTTTCAATAAGGTTTCGCAGCTGCAATCTTCAAAGCAACGCAAAGGGTCTCTGCTACACGACCATGTCACTGCAACTTAG

Protein sequence

>MS.gene002752.t1

MLSKKPAVFEKAVLEVKQLGFNPNNTFFLIALHAKISPKSVWERKINAYKKWGWSDEVIVSAFLKYPWCMLASVEKIEAVMQFFVNHMGWESNVLAKHPMLVMVSLEKRVIPKVLKFLQSKGLIKDAKLAAPFKVSEDVFLKRFVNCFEEEASQLLKLYEEKRDVSTFNKVSQLQSSKQRKGSLLHDHVTAT