AlfalfaGEDB | MS.gene002917

M. sativa cultivar XinJiangDaYe / MS.gene002917

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002917.t1	XP_013462788.1	98	392	8	0	1	392	1	392	2.20E-220	774.6

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002917.t1	F4JEQ2	62.2	373	123	3	1	363	3	367	4.1e-127	456.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002917.t1	A0A072V667	98.0	392	8	0	1	392	1	392	1.6e-220	774.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002917.t1	MTR_2g022810	97.959	392	8	0	1	392	1	392	0.0	804
MS.gene002917.t1	MTR_3g050780	60.331	363	143	1	1	363	1	362	9.03e-159	454
MS.gene002917.t1	MTR_5g092120	58.074	353	139	2	7	358	6	350	3.76e-148	424
MS.gene002917.t1	MTR_2g019990	64.744	312	109	1	52	362	61	372	2.25e-145	422
MS.gene002917.t1	MTR_7g100500	54.933	375	145	4	1	366	1	360	2.54e-145	417
MS.gene002917.t1	MTR_1g067140	63.851	296	107	0	65	360	60	355	1.63e-142	410
MS.gene002917.t1	MTR_1g117060	61.438	306	116	1	64	367	82	387	4.71e-139	405
MS.gene002917.t1	MTR_2g095880	56.213	338	142	2	33	364	39	376	2.18e-138	401
MS.gene002917.t1	MTR_2g095920	53.611	360	161	2	11	364	130	489	1.64e-136	399
MS.gene002917.t1	MTR_3g115500	54.572	339	151	2	35	373	8	343	1.85e-132	384

Showing 1 to 10 of 502 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002917.t1	AT3G20530	68.085	329	104	1	36	363	39	367	3.19e-164	466
MS.gene002917.t1	AT1G61860	63.526	329	120	0	29	357	35	363	2.58e-155	443
MS.gene002917.t1	AT5G18610	55.556	378	159	4	3	374	4	378	2.65e-145	422
MS.gene002917.t1	AT5G18610	55.556	378	159	4	3	374	4	378	2.65e-145	422
MS.gene002917.t1	AT5G18610	55.556	378	159	4	3	374	4	378	2.65e-145	422
MS.gene002917.t1	AT5G02800	56.077	362	153	2	1	362	1	356	9.14e-144	414
MS.gene002917.t1	AT5G13160	54.400	375	152	3	1	362	1	369	1.66e-139	405
MS.gene002917.t1	AT1G07870	60.390	308	122	0	65	372	89	396	9.44e-139	402
MS.gene002917.t1	AT1G07870	60.390	308	122	0	65	372	89	396	2.19e-137	403
MS.gene002917.t1	AT2G28590	50.919	381	168	1	1	362	1	381	4.98e-137	398

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 81 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTATAAATATCTGACTT+TGG	0.354792	2.1:+65487457	None:intergenic
AAAGGAAAGTTCCCTGTAAA+GGG	0.450214	2.1:-65487210	MS.gene002917:CDS
AACATATGAAGAAATTGCTG+AGG	0.620288	2.1:-65488572	MS.gene002917:CDS
AACCATTGGATTGGCATACA+AGG	0.501349	2.1:-65487723	MS.gene002917:CDS
AACTATAAATATCTGACTTT+GGG	0.263684	2.1:+65487458	None:intergenic
AAGAACAAAACTTGATTGAT+TGG	0.339483	2.1:-65487372	MS.gene002917:CDS
AAGTCAGATATTTATAGTTT+TGG	0.329933	2.1:-65487454	MS.gene002917:CDS
AAGTCCTCTTGCTGCTCCGT+CGG	0.598070	2.1:+65487690	None:intergenic
AAGTTCATTTGCAGCTGAAA+GGG	0.502666	2.1:-65487004	MS.gene002917:CDS
AATAACCGACAAGTTTCACT+AGG	0.590349	2.1:+65488282	None:intergenic

Showing 1 to 10 of 81 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACATATGAAGAAATTGCTG+AGG	-	chr2.1:65487444-65487463	MS.gene002917:CDS	30.0%
ATTGTGTAGAAGATGATCAA+AGG	-	chr2.1:65487754-65487773	MS.gene002917:intron	30.0%
CCAAAAACAATAGAACAATG+TGG	+	chr2.1:65487268-65487287	None:intergenic	30.0%
GATTGACATGTTACAATTTC+AGG	-	chr2.1:65488152-65488171	MS.gene002917:intron	30.0%
GTTCAATTGTTAGAAACATG+TGG	+	chr2.1:65488114-65488133	None:intergenic	30.0%
GTTTCGGTGAATTGAAAAAA+AGG	+	chr2.1:65488197-65488216	None:intergenic	30.0%
TAAATCATTGCTATGTCTCT+AGG	+	chr2.1:65488087-65488106	None:intergenic	30.0%
TGCTAATTCGAAAAAAAGAG+AGG	+	chr2.1:65487929-65487948	None:intergenic	30.0%
TGTTTGTTTACCACAGATAT+AGG	-	chr2.1:65488259-65488278	MS.gene002917:CDS	30.0%
AAAGGAAAGTTCCCTGTAAA+GGG	-	chr2.1:65488806-65488825	MS.gene002917:intron	35.0%

Showing 1 to 10 of 128 entries

Previous1 2 3 4 5…13Next

Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	65486999	65489039	65486999	ID=MS.gene002917
chr2.1	mRNA	65486999	65489039	65486999	ID=MS.gene002917.t1;Parent=MS.gene002917
chr2.1	exon	65488913	65489039	65488913	ID=MS.gene002917.t1.exon1;Parent=MS.gene002917.t1
chr2.1	CDS	65488913	65489039	65488913	ID=cds.MS.gene002917.t1;Parent=MS.gene002917.t1
chr2.1	exon	65488486	65488667	65488486	ID=MS.gene002917.t1.exon2;Parent=MS.gene002917.t1
chr2.1	CDS	65488486	65488667	65488486	ID=cds.MS.gene002917.t1;Parent=MS.gene002917.t1
chr2.1	exon	65488210	65488399	65488210	ID=MS.gene002917.t1.exon3;Parent=MS.gene002917.t1
chr2.1	CDS	65488210	65488399	65488210	ID=cds.MS.gene002917.t1;Parent=MS.gene002917.t1
chr2.1	exon	65487372	65487763	65487372	ID=MS.gene002917.t1.exon4;Parent=MS.gene002917.t1
chr2.1	CDS	65487372	65487763	65487372	ID=cds.MS.gene002917.t1;Parent=MS.gene002917.t1
chr2.1	exon	65486999	65487289	65486999	ID=MS.gene002917.t1.exon5;Parent=MS.gene002917.t1
chr2.1	CDS	65486999	65487289	65486999	ID=cds.MS.gene002917.t1;Parent=MS.gene002917.t1

Gene Sequence

>MS.gene002917

ATGAGTTGCATTCCATGTTGCTGCAAATCCGATGTTAAATCAACCTCTTACAACCAAGTTTCCAACAAAGTTTCCAAAGGAAGAAGAACATTTAAATCATTAGCAGATGCTATGTCACGAAAAACAGGTATGTGGTATATGATTCATTCTAGATAGATACACAAATTAATATATATTATTTTCTAATTCAATCCAACAATATTTGTTAAATTGCATGTTCATACAAAAAATAAAAATTTTGTTGTATGATAATTCCTTCCTCAAAACCACATTGTTCTATTGTTTTTGGTTCATTTCTTAATATGGTATATAATTATATTTCCAAATGGAAATGTGGATTAATAATTTGTTTGATCTTAAATTAAATTGCAGGTAGCAGCAGACATAGACAAATTACAGCAGAAATACTAAAATATGGAGCTGCAAAAAATGATGTTAAAGTATTAACATATGAAGAAATTGCTGAGGCAACAAACAACTTCGGTTCTGATTGTCTTGTGGGAGAAGGTGGATTTGGGAATGTGTATAAAGGATACATGAAAAGCATTGAACAAGTTTGTTTCTCTCTCTTTCTTGTTGTACAAGTTTGTTTCTTGTTTTACAAGTTATTTGAGTCTCATATTAAATACTCAATGTTCAGAATGTAGCTGTGAAGACTCTGAACAGGGATGGGAATCAGGGAACAAGAGAATTTTTCGCAGAAGTTTTAATGTTGAGTATGGTGAATCATCCAAACCTAGTGAAACTTGTCGGTTATTGTGTAGAAGATGATCAAAGGATTTTAGTTTATGAGTACATGACCAATGGAAGCTTGGAAGATCACCTTCTTGGTAGGTAGTAGTATCTAAAAACATTATATTTCTTAGACTTCTTTTTTTGGTGAATAGGAAATTTCATCCTTAAAATTGTAATCATCGATCAAAGTAGCCTCTCTTTTTTTCGAATTAGCAATTGCATCCTTGACGTCAATCAAAAGGTCTCTTTGTTAAGTTATGCGAGTATGACTCACATGACATGTTAAATGAAGATGTGACATTCCACGTGGGCTCCATATCATTTGTGGAGTGGAGACGCAGCACATTCGTCCTAGAGACATAGCAATGATTTAGAGTCCACATGTTTCTAACAATTGAACTTAATGAAGAGATTATTTGATTGACATGTTACAATTTCAGGGATGAAATTGCCTATTCTCCCTTTTTTTCAATTCACCGAAACAAAACTATAGACAACACTAAAACTGAAACGAGTGTGTTTGTTTGTTTGTTTACCACAGATATAGGTAATGAGAAGGAACCATTGGATTGGCATACAAGGATGAAAATTGCCGACGGAGCAGCAAGAGGACTTGAATATCTGCATAACTATGCAGATCCACCAGTGATTTTTCGTGATTTAAAATCGTCTAATATACTATTAGATGAAAATTTCAATCCAAAGCTTTCTGATTTTGGTCTTGCCAAGATTGCCCCAAGAGAGGGTGAGTTTGTAGCCAAAACCAGAGTTATGGGGACTTATGGCTACTGTGCACCAGAATACGTTGCTACTGGTCAATGTACCCCAAAGTCAGATATTTATAGTTTTGGTGTTGTGTTTTTGGAAATAATCAGTGGTAGGAGAGTAATTGACACTGCAAGAGATGCAGAAGAACAAAACTTGATTGATTGGGTATGTCGCGTTAAATATGAGATTCAACGATGAAAATTTCATTAAATATGGTGATACTAACATTATTTTTATGAATTGGCAGGCACAACCTTTGTTTGAGGATAGAGCAAAGTTCACTCTAATGGCTGATCCTTTGCTTAAAGGAAAGTTCCCTGTAAAGGGACTATTTCAAGCCCTTGCAGTGGCAGCAATGTGTCTACAAGAAGAAGCTGACACGCGCCCGTACATGGATGATGTCGTAGCGGCTCTTGCACATTTAGCAGTACACAAAACTGATGAAAAAGACATAGCTGGTGAATCTATAAAAACTGCTGGTCATGTTGAATCTTTTAGAGCTCCAAGTGGAAGTTCATTTGCAGCTGAAAGGGTATAA

Protein sequence

>MS.gene002917.t1

MSCIPCCCKSDVKSTSYNQVSNKVSKGRRTFKSLADAMSRKTGSSRHRQITAEILKYGAAKNDVKVLTYEEIAEATNNFGSDCLVGEGGFGNVYKGYMKSIEQNVAVKTLNRDGNQGTREFFAEVLMLSMVNHPNLVKLVGYCVEDDQRILVYEYMTNGSLEDHLLDIGNEKEPLDWHTRMKIADGAARGLEYLHNYADPPVIFRDLKSSNILLDENFNPKLSDFGLAKIAPREGEFVAKTRVMGTYGYCAPEYVATGQCTPKSDIYSFGVVFLEIISGRRVIDTARDAEEQNLIDWAQPLFEDRAKFTLMADPLLKGKFPVKGLFQALAVAAMCLQEEADTRPYMDDVVAALAHLAVHKTDEKDIAGESIKTAGHVESFRAPSGSSFAAERV