AlfalfaGEDB | MS.gene002945

M. sativa cultivar XinJiangDaYe / MS.gene002945

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF12799.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002945.t1	RHN72504.1	86.6	597	54	1	1	571	21	617	7.10E-257	896.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002945.t1	O48788	40.4	324	160	6	262	563	311	623	3.5e-55	217.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002945.t1	A0A396J6L6	86.6	597	54	1	1	571	21	617	5.1e-257	896.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002945.t1	MTR_2g023150	97.318	261	7	0	311	571	1	261	0.0	528
MS.gene002945.t1	MTR_3g078250	45.192	624	276	11	5	569	25	641	2.22e-173	506
MS.gene002945.t1	MTR_3g093710	33.224	611	324	16	15	565	34	620	1.14e-84	276
MS.gene002945.t1	MTR_3g062500	32.137	613	337	18	10	565	42	632	1.29e-84	276
MS.gene002945.t1	MTR_1g061590	32.562	648	338	18	1	563	17	650	2.06e-84	276
MS.gene002945.t1	MTR_3g062500	32.131	610	341	17	10	565	52	642	2.62e-84	276
MS.gene002945.t1	MTR_8g099195	32.415	617	319	18	4	560	18	596	1.33e-82	271
MS.gene002945.t1	MTR_5g055470	33.390	584	324	18	26	561	43	609	3.24e-82	270
MS.gene002945.t1	MTR_3g090660	31.915	611	342	14	2	566	18	600	3.64e-82	269
MS.gene002945.t1	MTR_7g073710	33.552	611	313	20	10	560	30	607	1.57e-81	267

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002945.t1	AT2G26730	35.499	631	310	19	2	563	21	623	1.80e-93	300
MS.gene002945.t1	AT5G53320	32.105	570	352	12	8	563	25	573	2.13e-82	270
MS.gene002945.t1	AT1G64210	33.166	597	318	21	7	561	23	580	1.20e-80	265
MS.gene002945.t1	AT3G08680	31.731	624	332	24	2	560	21	615	3.89e-76	254
MS.gene002945.t1	AT3G08680	31.731	624	332	24	2	560	21	615	3.89e-76	254
MS.gene002945.t1	AT5G05160	31.240	605	326	19	30	570	49	627	1.60e-74	249
MS.gene002945.t1	AT4G23740	31.884	621	314	21	8	559	28	608	1.65e-73	247
MS.gene002945.t1	AT4G23740	31.884	621	314	21	8	559	28	608	1.65e-73	247
MS.gene002945.t1	AT5G58300	32.709	587	318	18	30	560	65	630	1.06e-72	245
MS.gene002945.t1	AT5G58300	32.709	587	318	18	30	560	65	630	1.06e-72	245

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Find 106 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATGGAAGTCTATATA+AGG	0.368252	2.4:-64092577	MS.gene002945:CDS
AAATTAGAGAAATAAAATGT+TGG	0.548949	2.4:+64093096	None:intergenic
AAGAAATAACCTTGCAAATC+TGG	0.240365	2.4:+64093030	None:intergenic
AAGAGTATGCAAGTGAAGAG+AGG	0.544291	2.4:-64091622	MS.gene002945:CDS
AAGGAAGATGTTTATGGATT+TGG	0.251168	2.4:-64091770	MS.gene002945:CDS
AAGGTGAGAGATTCAGCTAG+AGG	0.622866	2.4:+64093369	None:intergenic
AAGTCTGCTGCTCCAATCAA+AGG	0.536894	2.4:+64091994	None:intergenic
AAGTTGAATTATTATTCTGC+TGG	0.446252	2.4:+64093535	None:intergenic
AATCACTTATTGTTCTTTCA+AGG	0.349207	2.4:-64092665	MS.gene002945:CDS
AATCAGTTGTAAGGGAAGAA+TGG	0.497333	2.4:-64091676	MS.gene002945:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAATAACCTTGCAAATC+TGG	+	chr2.4:64092060-64092079	None:intergenic	30.0%
AAGGAAGATGTTTATGGATT+TGG	-	chr2.4:64093317-64093336	MS.gene002945:CDS	30.0%
ATCTTACTAACAGTGCTTAA+AGG	+	chr2.4:64092151-64092170	None:intergenic	30.0%
ATTCTTCTTGAACTACTAAC+TGG	-	chr2.4:64093344-64093363	MS.gene002945:CDS	30.0%
GAACAAATTCTTATGTACTC+AGG	-	chr2.4:64092202-64092221	MS.gene002945:intron	30.0%
GATATCAGAAGAAGAATCAA+AGG	-	chr2.4:64092168-64092187	MS.gene002945:intron	30.0%
TAAAGAAGTTGGATCTTTAC+AGG	-	chr2.4:64091647-64091666	MS.gene002945:CDS	30.0%
TAACACTATCAAAGATGAAG+AGG	-	chr2.4:64093574-64093593	MS.gene002945:CDS	30.0%
TACCATGAATAATACCATGT+TGG	+	chr2.4:64093172-64093191	None:intergenic	30.0%
TGAACTACTAACTGGAAAAT+TGG	-	chr2.4:64093352-64093371	MS.gene002945:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	64091487	64093622	64091487	ID=MS.gene002945
chr2.4	mRNA	64091487	64093622	64091487	ID=MS.gene002945.t1;Parent=MS.gene002945
chr2.4	exon	64093013	64093622	64093013	ID=MS.gene002945.t1.exon1;Parent=MS.gene002945.t1
chr2.4	CDS	64093013	64093622	64093013	ID=cds.MS.gene002945.t1;Parent=MS.gene002945.t1
chr2.4	exon	64092370	64092933	64092370	ID=MS.gene002945.t1.exon2;Parent=MS.gene002945.t1
chr2.4	CDS	64092370	64092933	64092370	ID=cds.MS.gene002945.t1;Parent=MS.gene002945.t1
chr2.4	exon	64091487	64092028	64091487	ID=MS.gene002945.t1.exon3;Parent=MS.gene002945.t1
chr2.4	CDS	64091487	64092028	64091487	ID=cds.MS.gene002945.t1;Parent=MS.gene002945.t1

Gene Sequence

>MS.gene002945

ATGATTAGTTGTGAGAATGATGAGATGAAGAGAACACTAATACAGTTCTTGACACAACTCAAAGGCCAGCAGAATAATAATTCAACTTTGGTCTGGAAACCAGACACTGATCCCTGCAAGGATCATTGGAATGGTGTATACTGTGATGCACAAATGTCAATAAAGAAGTTGGATCTTTACAGGTTCAATTTGTCTGGAACTCTCGACGTTGCCTTGCTTTGCAACCTACAGCCTCTAGCTGAATCTCTCACCTTTCTTAGTCTCGATGACAACAACATCAGTGGCGGAATAACATCTGAGATCGGAAACTGCAAACAACTCACTCGCCTTCACCTAAGCGGAAACCAACTTGCTGGAAACCTTCCTACTTCACTTGCCATGTTGAACAATTTGAAAAGACTAGACATTTCAAACAACAAGTTTTCGGGACCGTTGCCAAACCTGGCTAGAATCTCAGGCCTCAATATGTTCCTAGCACAAAACAATGAACTTAGTGGAAATATACCAACATTTTATTTCTCTAATTTTGACCGTTTCAATGTTTCCTTTAACAATTTTAGTGGTCCAATTCCAGATTTGCAAGGTTATTTCTTTGCAGACAGTTTTCTTGGTAATCCAAGACTATGTGGATATCCACTACAAAAAAAATTGTACTAGTCAACCTTTAAGCACTGTTAGTAAGATATCAGAAGAAGAATCAAAGGGTGCTTCTAAAGAACAAATTCTTATGTACTCAGGCTATGCTGCATTAGGTTTTATCATAATATTTTTTGTAGTCTGGAAGCTGTGTATAAGAAAGAAGAGTGGGAAAAAAGTTCAAACAGAATTGAATGATGATATCGAAAAACCGAACTATGTTTCAAGCGAATCCAAAGCAGAAGAACTAAGCAAATCTGGATTTTCAGTTACCTCTGAAAGTGGAATGGTATCACAACAATCACTTATTGTTCTTTCAAGGCCAGTAGTGAATGAATTGAAATTAGAGGAGTTGTTGAGAGCACCTGCTGAAATGATAGGAAGAGGAAAGAATGGAAGTCTATATAAGGTGATGCTAACCAATGGGATTCAAGTGGTTGTAAAAAGGATTAAAGATTGGAGTATTTCTAGTGTTGAATTCAAGCAAAGAATGCAACTATTGAATCAAGCAAAACACCCTCATGTTCTGCCACCTCTTGCTTTCTATTGTTCCAAACAAGAGAAGCTTTTGGTCTATGAATATCAGCAGAATAGAAGTTTGTTCAAGCTTCTACATGGTAAATTTTAAATACCAAATCTTCATTTTGTTTTTATATATCCTACACTTTATTTATTGGCTTAATTACTCTCTAGGTCCCTGAAATAAGTCCTTGAAATATATTTTTATACATTTGAGTCCCTAAATTTATTAACAAATTGCAATTAGGCCCTTGAGTTTAAATATTTTTAATCAGTTCCTTGAACTTTTAGATAATTTATAAATAGATCCTTGAATTAAGGGATTCAATTATAATTTATATAAAAATTTCAAGGACTTAATGACAAATTATTTACAAGTTTAGGAATCTGATTAACAGCATTTTAGTTCAGAGACCTAATTAACTAGATATGCTTTCAGGCACATCAAAAACCTTTGATTGGAGCAGCAGACTTGGACTTGCATCTACAGTTGCTGAAGCATTAGCTTTCATGCATCAAGAGCTTGGCCAACATGGTATTATTCATGGTAACATGAAATCCTCAAACATTTTGCTAAACATTAACATGGAGCCTTGTATTAGTGAATATGGCACTATGCCAAAGGATGATCAACAAAGTTCAACTTTTGCAACTCCTAATAATGCTAATGCATTCAAGGAAGATGTTTATGGATTTGGTGTTATTCTTCTTGAACTACTAACTGGAAAATTGGTGAAGAGTAATGGTATTGACTTGACTGAATGGGTTCAATCAGTTGTAAGGGAAGAATGGACAGGTGAAGTATTTGATAGGTCATTATTGAAAGAGTATGCAAGTGAAGAGAGGATGGTTAATATGCTTCAAGTGGCTATAAGATGTGTCAATAGTTCCTTTGAGGCTAGGCCAACTATGAATCATGTGGCTCTTATGATTAACACTATCAAAGATGAAGAGGAAAAATCCTTGATTTATCAAGTTTGA

Protein sequence

>MS.gene002945.t1

MISCENDEMKRTLIQFLTQLKGQQNNNSTLVWKPDTDPCKDHWNGVYCDAQMSIKKLDLYRFNLSGTLDVALLCNLQPLAESLTFLSLDDNNISGGITSEIGNCKQLTRLHLSGNQLAGNLPTSLAMLNNLKRLDISNNKFSGPLPNLARISGLNMFLAQNNELSGNIPTFYFSNFDRFNVSFNNFSGPIPDLQGYFFADSFLEEESKGASKEQILMYSGYAALGFIIIFFVVWKLCIRKKSGKKVQTELNDDIEKPNYVSSESKAEELSKSGFSVTSESGMVSQQSLIVLSRPVVNELKLEELLRAPAEMIGRGKNGSLYKVMLTNGIQVVVKRIKDWSISSVEFKQRMQLLNQAKHPHVLPPLAFYCSKQEKLLVYEYQQNRSLFKLLHGTSKTFDWSSRLGLASTVAEALAFMHQELGQHGIIHGNMKSSNILLNINMEPCISEYGTMPKDDQQSSTFATPNNANAFKEDVYGFGVILLELLTGKLVKSNGIDLTEWVQSVVREEWTGEVFDRSLLKEYASEERMVNMLQVAIRCVNSSFEARPTMNHVALMINTIKDEEEKSLIYQV