AlfalfaGEDB | MS.gene002989

M. sativa cultivar XinJiangDaYe / MS.gene002989

KEGG: K20716
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002989.t1	XP_024631685.1	93.4	362	23	1	1	361	1	362	3.40E-196	694.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002989.t1	Q9ZVP5	47.7	344	156	12	4	329	2	339	2.0e-80	300.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002989.t1	A0A396J874	93.4	362	23	1	1	361	1	362	2.5e-196	694.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002989.t1	MTR_2g023890	94.328	335	18	1	1	334	1	335	0.0	631
MS.gene002989.t1	MTR_2g088020	48.459	357	162	8	1	342	1	350	3.38e-107	320
MS.gene002989.t1	MTR_4g049730	45.665	346	164	11	5	336	3	338	6.31e-98	296
MS.gene002989.t1	MTR_0189s0010	40.294	340	185	10	2	327	20	355	3.20e-71	226
MS.gene002989.t1	MTR_0154s0040	39.823	339	184	11	4	327	2	335	4.07e-69	220
MS.gene002989.t1	MTR_0154s0020	39.233	339	186	10	4	327	2	335	4.39e-69	220
MS.gene002989.t1	MTR_5g017110	38.068	352	193	10	3	329	2	353	1.56e-66	214
MS.gene002989.t1	MTR_5g017140	41.762	261	142	5	4	254	2	262	6.81e-61	198
MS.gene002989.t1	MTR_7g113490	36.578	339	183	10	5	322	68	395	4.90e-54	188
MS.gene002989.t1	MTR_2g005290	34.983	303	161	8	4	272	9	309	4.12e-53	180

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002989.t1	AT1G05100	47.674	344	156	12	4	329	2	339	1.40e-98	296
MS.gene002989.t1	AT2G32510	51.568	287	124	7	4	276	2	287	8.29e-98	295
MS.gene002989.t1	AT5G55090	45.429	350	171	6	3	334	4	351	3.61e-95	291
MS.gene002989.t1	AT5G55090	45.429	350	171	6	3	334	66	413	2.91e-94	290
MS.gene002989.t1	AT4G26890	46.739	368	168	11	1	350	1	358	4.23e-93	285
MS.gene002989.t1	AT3G50310	38.527	353	176	10	4	327	2	342	5.02e-65	210
MS.gene002989.t1	AT5G67080	38.483	356	174	11	4	327	2	344	5.11e-63	205
MS.gene002989.t1	AT1G07150	38.905	347	188	11	5	339	9	343	3.75e-57	194
MS.gene002989.t1	AT1G07150	38.905	347	188	11	5	339	23	357	4.48e-57	194
MS.gene002989.t1	AT2G30040	42.908	282	138	9	5	272	17	289	8.55e-57	192

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Find 100 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTTGAATTCTGTTCCG+TGG	0.557726	2.2:-62033859	None:intergenic
AAATGGAATTGAAGAAGCTA+TGG	0.545578	2.2:+62033243	MS.gene002989:CDS
AACGTGTTGGTGACAGAACA+AGG	0.582048	2.2:+62033349	MS.gene002989:CDS
AATTTGTGGACACTTTAACT+TGG	0.509208	2.2:-62033113	None:intergenic
ACATACTTTCTAATATGTCA+AGG	0.582867	2.2:+62032942	None:intergenic
ACCAATCCGATACAAAACCG+CGG	0.738063	2.2:-62033566	None:intergenic
ACCACCGACCACCTCTCATT+TGG	0.399250	2.2:-62033670	None:intergenic
ACCGGAGGTGGCACGTGGGG+AGG	0.475076	2.2:+62033450	MS.gene002989:CDS
ACCGGCTTTCATGGCACCGG+AGG	0.600270	2.2:+62033435	MS.gene002989:CDS
ACCTCCGGTGCCATGAAAGC+CGG	0.515758	2.2:-62033436	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGGAATTGAAGAAGCTA+TGG	+	chr2.2:62033243-62033262	MS.gene002989:CDS	30.0%
AATTTGTGGACACTTTAACT+TGG	-	chr2.2:62033116-62033135	None:intergenic	30.0%
ATAGTGCATTGTGATTTGAA+GGG	+	chr2.2:62033322-62033341	MS.gene002989:CDS	30.0%
CTTGACTATCTTCATTTGAA+TGG	+	chr2.2:62033298-62033317	MS.gene002989:CDS	30.0%
TTGTAGTTGAATTGAGTAGA+TGG	+	chr2.2:62034055-62034074	MS.gene002989:intron	30.0%
AAACTTTGAATTCTGTTCCG+TGG	-	chr2.2:62033862-62033881	None:intergenic	35.0%
ACTTGAATGTAGTTGTTCCT+CGG	+	chr2.2:62033825-62033844	MS.gene002989:CDS	35.0%
AGAACAAGGTGTGAAAATTG+CGG	+	chr2.2:62033363-62033382	MS.gene002989:CDS	35.0%
CCTTGTTCAGAAACATAATC+AGG	-	chr2.2:62033616-62033635	None:intergenic	35.0%
GAAACATAATCAGGAATCTC+TGG	-	chr2.2:62033607-62033626	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	62032956	62034132	62032956	ID=MS.gene002989
chr2.2	mRNA	62032956	62034132	62032956	ID=MS.gene002989.t1;Parent=MS.gene002989
chr2.2	exon	62032956	62034027	62032956	ID=MS.gene002989.t1.exon1;Parent=MS.gene002989.t1
chr2.2	CDS	62032956	62034027	62032956	ID=cds.MS.gene002989.t1;Parent=MS.gene002989.t1
chr2.2	exon	62034107	62034132	62034107	ID=MS.gene002989.t1.exon2;Parent=MS.gene002989.t1
chr2.2	CDS	62034107	62034132	62034107	ID=cds.MS.gene002989.t1;Parent=MS.gene002989.t1

Gene Sequence

>MS.gene002989

ATGTCAAGGGATTGGTCTAGAGGCAGAATCATCGGCAGTGGCTCGACTGCCACCGTTTATGTAGCTGATCGTTGCCATTCTGGTGGTGAAGTGTTTGCGGTGAAGTCTACGGAGCTTCACCGCTCGGAGTTATTGAAGAAAGAACAACAGATTCTCTCCAAGTTAAAGTGTCCACAAATTGTGAGCTACCAAGGTTGTGAAGTCACCTTTGAAAATGGTGTTCAATTGTTCAACTTGTTCATGGAGTATGCACCTAAGGGAACTGTTTCTGATGCAGTTCGCAAAGGAAATGGAATTGAAGAAGCTATGGTGGCATTCTATGCACGTCAAATTCTGCTAGGGCTTGACTATCTTCATTTGAATGGGATAGTGCATTGTGATTTGAAGGGACAGAACGTGTTGGTGACAGAACAAGGTGTGAAAATTGCGGATTTTGGTTGTGCTAGGAGGGTGGGAGAGGAGTTGGTGATTTCTGGTACACCGGCTTTCATGGCACCGGAGGTGGCACGTGGGGAGGAGCAGGGGTTTGCTGCTGATGTATGGGCTTTGGGATGTACTTTGTTGGAGATGATCACTGGAAAACTACTGTGGCAGGGTTTTTCTGACCCTGCCGCGGTTTTGTATCGGATTGGTTTCTCTGGCGATGTGCCAGAGATTCCTGATTATGTTTCTGAACAAGGGAAGGATTTTTTGAGAAAATGTTTGAAGAGAGATCCAAATGAGAGGTGGTCGGTGGTTGATCTTCTTGGACATGAGTTTGTTGGGAAGTTTAAGGACTCAGTGTTTGATTCAGAAACTCCAACGACTGTGTTGGAAGGAGGATTTTGGGATTGGGATTCTTTGGAAACAACTCAAGAAGTAGGTCCCACACTTGAATGTAGTTGTTCCTCGGATTCTTCGAGTCCACGGAACAGAATTCAAAGTTTGTGTTCTGATGAGGCTTTTTGGGAATCTGATGATGATGAATGGGTTACAGTAAGAAGCAATGGTGAGGAGTTGAATGCATTGTCATTTGAAGAAATTGAAGATTATGAATTAGACATTGTTTGTGAACTTGATGATCATGAGATTAGTTTGGTGATTTTTTATGAACCAAAAATTGTAGTTGAATTGAGTAGATGGAATGACATTTTTGATTATTTGTGTTTTAGAAGCTGCAATTGTGGCTTTTGTGTAA

Protein sequence

>MS.gene002989.t1

MSRDWSRGRIIGSGSTATVYVADRCHSGGEVFAVKSTELHRSELLKKEQQILSKLKCPQIVSYQGCEVTFENGVQLFNLFMEYAPKGTVSDAVRKGNGIEEAMVAFYARQILLGLDYLHLNGIVHCDLKGQNVLVTEQGVKIADFGCARRVGEELVISGTPAFMAPEVARGEEQGFAADVWALGCTLLEMITGKLLWQGFSDPAAVLYRIGFSGDVPEIPDYVSEQGKDFLRKCLKRDPNERWSVVDLLGHEFVGKFKDSVFDSETPTTVLEGGFWDWDSLETTQEVGPTLECSCSSDSSSPRNRIQSLCSDEAFWESDDDEWVTVRSNGEELNALSFEEIEDYELDIVCELDDHEIKAAIVAFV