AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003000.t1 MTR_2g024270 71.705 516 132 5 1 513 322 826 0.0 758
MS.gene003000.t1 MTR_2g024140 71.176 510 121 4 1 507 202 688 0.0 712
MS.gene003000.t1 MTR_4g132540 65.693 548 138 9 1 510 335 870 0.0 693
MS.gene003000.t1 MTR_1g069565 47.887 568 228 12 1 504 316 879 2.24e-160 478
MS.gene003000.t1 MTR_1g114150 49.444 540 231 11 1 504 515 1048 1.38e-158 478
MS.gene003000.t1 MTR_1g114130 48.339 542 238 12 1 504 499 1036 1.50e-154 469
MS.gene003000.t1 MTR_5g065200 50.281 533 219 16 3 504 315 832 1.45e-153 459
MS.gene003000.t1 MTR_1g114070 47.388 536 240 11 1 504 397 922 1.39e-146 445
MS.gene003000.t1 MTR_5g047620 46.223 556 239 15 1 504 248 795 3.26e-143 432
MS.gene003000.t1 MTR_2g024240 71.724 290 67 3 182 469 112 388 1.68e-140 410
MS.gene003000.t1 MTR_2g024240 69.000 100 29 2 1 99 1 99 3.10e-38 144
MS.gene003000.t1 MTR_1g069565 41.920 625 238 14 1 504 316 936 1.18e-139 426
MS.gene003000.t1 MTR_0020s0100 44.129 528 229 17 1 489 191 691 9.50e-120 368
MS.gene003000.t1 MTR_1g083120 35.622 539 258 10 35 507 379 894 1.41e-103 331
MS.gene003000.t1 MTR_1g083120 35.622 539 258 10 35 507 396 911 2.31e-103 331
MS.gene003000.t1 MTR_1g114150 43.619 431 203 10 1 397 515 939 2.08e-99 320
MS.gene003000.t1 MTR_1g083120 35.491 479 220 10 35 447 379 834 7.13e-88 288
MS.gene003000.t1 MTR_1g083120 35.270 482 223 10 32 447 376 834 1.29e-87 287
MS.gene003000.t1 MTR_8g465700 69.399 183 50 2 114 296 1 177 1.14e-86 268
MS.gene003000.t1 MTR_7g117445 43.871 310 155 3 35 326 358 666 9.25e-85 280
MS.gene003000.t1 MTR_7g117445 66.304 92 29 1 356 445 774 865 1.98e-31 129
MS.gene003000.t1 MTR_7g117445 44.194 310 154 4 35 326 358 666 2.02e-84 280
MS.gene003000.t1 MTR_7g117445 63.399 153 54 1 356 506 774 926 3.25e-56 202
MS.gene003000.t1 MTR_7g117445 44.194 310 154 4 35 326 358 666 2.08e-84 280
MS.gene003000.t1 MTR_7g117445 63.399 153 54 1 356 506 774 926 3.39e-56 202
MS.gene003000.t1 MTR_7g117445 44.194 310 154 4 35 326 358 666 3.72e-84 280
MS.gene003000.t1 MTR_7g117445 63.399 153 54 1 356 506 774 926 4.61e-56 202
MS.gene003000.t1 MTR_1g008060 46.602 309 144 5 38 329 1059 1363 2.16e-76 262
MS.gene003000.t1 MTR_1g008060 60.843 166 60 2 344 507 1536 1698 6.49e-55 199
MS.gene003000.t1 MTR_1g008060 46.602 309 144 5 38 329 1050 1354 2.49e-76 262
MS.gene003000.t1 MTR_1g008060 60.843 166 60 2 344 507 1527 1689 6.92e-55 199
MS.gene003000.t1 MTR_2g011630 32.299 548 285 15 36 506 174 712 2.47e-72 244
MS.gene003000.t1 MTR_2g011630 32.299 548 285 15 36 506 206 744 4.47e-72 244
MS.gene003000.t1 MTR_2g011630 32.299 548 285 15 36 506 418 956 3.24e-70 242
MS.gene003000.t1 MTR_8g465720 57.447 188 36 4 328 512 18 164 2.44e-61 199
MS.gene003000.t1 MTR_4g091520 35.831 307 172 4 37 324 648 948 6.38e-50 184
MS.gene003000.t1 MTR_4g091520 35.831 307 172 4 37 324 683 983 8.48e-50 184
MS.gene003000.t1 MTR_4g091520 35.831 307 172 4 37 324 718 1018 9.48e-50 184
MS.gene003000.t1 MTR_4g091520 35.831 307 172 4 37 324 718 1018 1.29e-49 184
MS.gene003000.t1 MTR_4g091520 47.403 154 78 2 355 506 1126 1278 4.92e-37 146
MS.gene003000.t1 MTR_0295s0020 47.929 169 81 1 175 336 12 180 3.27e-44 154
MS.gene003000.t1 MTR_8g013920 43.396 159 73 5 209 365 40 183 3.49e-28 111
MS.gene003000.t1 MTR_8g062940 30.864 162 94 5 9 159 201 355 2.55e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003000.t1 AT1G11950 57.996 519 195 10 2 507 363 871 0.0 598
MS.gene003000.t1 AT1G11950 57.996 519 195 10 2 507 363 871 0.0 598
MS.gene003000.t1 AT1G62310 58.964 502 189 7 1 487 378 877 0.0 579
MS.gene003000.t1 AT1G11950 55.679 449 176 10 2 437 363 801 2.87e-165 488
MS.gene003000.t1 AT3G07610 48.081 495 221 9 31 503 410 890 8.93e-141 431
MS.gene003000.t1 AT4G00990 41.682 559 241 9 35 510 279 835 5.69e-134 409
MS.gene003000.t1 AT3G07610 45.525 514 228 10 31 503 410 912 2.70e-132 410
MS.gene003000.t1 AT4G00990 40.040 502 216 9 35 453 279 778 2.30e-109 343
MS.gene003000.t1 AT4G00990 40.486 494 209 9 35 445 279 770 1.62e-108 340
MS.gene003000.t1 AT1G09060 33.527 516 285 12 35 507 393 893 8.54e-79 265
MS.gene003000.t1 AT1G09060 33.527 516 285 12 35 507 393 893 8.54e-79 265
MS.gene003000.t1 AT1G09060 33.527 516 285 12 35 507 407 907 9.92e-79 265
MS.gene003000.t1 AT1G09060 33.527 516 285 12 35 507 407 907 9.92e-79 265
MS.gene003000.t1 AT4G21430 33.790 438 248 10 108 511 490 919 2.49e-67 233
MS.gene003000.t1 AT3G07610 42.509 287 136 6 31 297 410 687 3.45e-63 220

Find 93 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACAACCTCCAAGTTCTTT+TGG 0.207866 2.2:-61913041 None:intergenic
AGAACATCACGAACTATAAT+TGG 0.208434 2.2:-61913296 None:intergenic
CTGTTATTAGAAAATTAAAA+AGG 0.230359 2.2:+61914318 MS.gene003000:CDS
AAAAGTATGCCTAAATTCTT+TGG 0.242870 2.2:-61914528 None:intergenic
GAGAGCATTGTGCGCAAATT+TGG 0.252466 2.2:+61913361 MS.gene003000:CDS
CAGAAACTGGTGGTGCTCTT+TGG 0.271763 2.2:+61914450 MS.gene003000:CDS
ACATGTCATAAAGCCTGATT+TGG 0.301815 2.2:+61914049 MS.gene003000:CDS
ATAGACCCCTTGGAGATTAA+TGG 0.305271 2.2:+61914386 MS.gene003000:CDS
TTGTGGCTGTGGTTGTGTTA+TGG 0.319953 2.2:+61913058 MS.gene003000:CDS
TTGTGCGCAAATTTGGCTTC+AGG 0.324597 2.2:+61913368 MS.gene003000:CDS
AGAAACTGGTGGTGCTCTTT+GGG 0.329119 2.2:+61914451 MS.gene003000:CDS
GGAAACACTCCAAAGAATTT+AGG 0.337467 2.2:+61914519 MS.gene003000:CDS
CACAAAACTTCACTGTGATA+TGG 0.367632 2.2:+61914130 MS.gene003000:CDS
CTTCATGATATACTGAGCTT+TGG 0.368964 2.2:-61913126 None:intergenic
TGAGCTTTGGTTATCAAATC+AGG 0.370740 2.2:-61913113 None:intergenic
AAATCAGGTATTCTCCCATT+TGG 0.376107 2.2:-61913098 None:intergenic
ATCACTATTAGCATTCCATT+TGG 0.401903 2.2:-61913000 None:intergenic
TAATACAGTACCTGTTCAAC+TGG 0.426256 2.2:-61914557 None:intergenic
AGGTTTGAGTTGGGAGCCTA+TGG 0.429318 2.2:+61913331 MS.gene003000:CDS
CTGAAACGCATGCTTCCAAA+TGG 0.431339 2.2:+61913083 MS.gene003000:CDS
CTTCTAATTCTTGTACAGCT+TGG 0.439855 2.2:-61915291 None:intergenic
GTTGGGAGCCTATGGTTACT+TGG 0.443800 2.2:+61913339 MS.gene003000:CDS
GTTTCGCTACACTCTTGAAA+TGG 0.449831 2.2:-61913987 None:intergenic
TGACCTTGAGATTTCTGACT+TGG 0.453559 2.2:-61914880 None:intergenic
TTGAAGGTGTCGAAACTCTT+CGG 0.459153 2.2:-61915085 None:intergenic
CAAATTCTTCAAAGGTTACA+AGG 0.462776 2.2:+61913848 MS.gene003000:CDS
TGCTCAAAAGAAACAGAAAC+TGG 0.463190 2.2:+61914437 MS.gene003000:CDS
TGGACATTTGAGCAGAAACT+TGG 0.466489 2.2:+61914824 MS.gene003000:CDS
AACAAGGGACAGGTTTGAGT+TGG 0.470587 2.2:+61913321 MS.gene003000:CDS
GCAACTTTGCAGCAAGGTTG+AGG 0.472874 2.2:-61914022 None:intergenic
ACAAGGGACAGGTTTGAGTT+GGG 0.475477 2.2:+61913322 MS.gene003000:CDS
CCAAAAGAACTTGGAGGTTG+TGG 0.477429 2.2:+61913041 MS.gene003000:CDS
GTATCAAAATTTGTTGGTAG+AGG 0.479805 2.2:-61912945 None:intergenic
TTGAATTTCGAAAGCATTGG+AGG 0.493283 2.2:+61913264 MS.gene003000:CDS
TTTCGAAAGCATTGGAGGAA+TGG 0.494705 2.2:+61913269 MS.gene003000:CDS
AGTAAAAGCCATCGATTGCT+TGG 0.495169 2.2:+61913415 MS.gene003000:CDS
CAAATTTCCATTAATCTCCA+AGG 0.503218 2.2:-61914393 None:intergenic
GAACTTGGAGGTTGTGGCTG+TGG 0.508394 2.2:+61913047 MS.gene003000:CDS
GATGTTCTTAAACAAGGGAC+AGG 0.511480 2.2:+61913311 MS.gene003000:CDS
AACACTCGCAAATTCTTCAA+AGG 0.513485 2.2:+61913840 MS.gene003000:CDS
ATGTTGAGACATTCACCAAA+TGG 0.520138 2.2:+61912985 MS.gene003000:CDS
TTTCATTAGATGCTCATCAC+TGG 0.524868 2.2:+61915315 MS.gene003000:CDS
AAGTTTCTGCTCAAATGTCC+AGG 0.526250 2.2:-61914822 None:intergenic
AGATGCTCAAGCTAAAAGAT+TGG 0.532972 2.2:+61913901 MS.gene003000:CDS
CATGTCATAAAGCCTGATTT+GGG 0.535555 2.2:+61914050 MS.gene003000:CDS
ATCAAAGAAGAACTTGGAAG+AGG 0.537226 2.2:+61914098 MS.gene003000:CDS
AAATTTCCATTAATCTCCAA+GGG 0.542541 2.2:-61914392 None:intergenic
TTTGATACAAACAATTCAGA+GGG 0.542912 2.2:+61912960 MS.gene003000:CDS
TATGGAATCAAAGAAGAACT+TGG 0.544627 2.2:+61914092 MS.gene003000:CDS
TTGAGATTTCTGACTTGGTG+TGG 0.545685 2.2:-61914875 None:intergenic
GAAGCAGTATTTATTCCTGC+TGG 0.549657 2.2:+61914848 MS.gene003000:CDS
AAATCAGGCTTTATGACATG+TGG 0.556215 2.2:-61914047 None:intergenic
TTCGTGATGTTCTTAAACAA+GGG 0.556466 2.2:+61913306 MS.gene003000:CDS
CGATTGCTTGGCTAGTTGTG+AGG 0.557110 2.2:+61913427 MS.gene003000:CDS
AAATGGAATGCTAATAGTGA+TGG 0.557384 2.2:+61913002 MS.gene003000:CDS
TCAAGATAATATAGACCCCT+TGG 0.558942 2.2:+61914376 MS.gene003000:CDS
TTCTTCAAAGGTTACAAGGA+GGG 0.559654 2.2:+61913852 MS.gene003000:CDS
GTTCGTGATGTTCTTAAACA+AGG 0.566626 2.2:+61913305 MS.gene003000:CDS
TGAGCATAAGAAGAAGCTAA+AGG 0.568843 2.2:+61914697 MS.gene003000:CDS
TTTATAAGGTCACTTGACAA+TGG 0.570123 2.2:-61913230 None:intergenic
ACTTGGTGTGGACATCCAGC+AGG 0.572126 2.2:-61914863 None:intergenic
GAATGTGCTCCAAAAGAACT+TGG 0.573014 2.2:+61913032 MS.gene003000:CDS
TAAGGTCACTTGACAATGGA+CGG 0.574775 2.2:-61913226 None:intergenic
GAGTGTAGCGAAACTCGAGC+TGG 0.576688 2.2:+61913996 MS.gene003000:CDS
TGAAACGCATGCTTCCAAAT+GGG 0.579984 2.2:+61913084 MS.gene003000:CDS
AGAGGTTATGATTACATGCA+TGG 0.580101 2.2:+61912915 MS.gene003000:CDS
TCAATTACAGGTGTAGAACC+TGG 0.581857 2.2:+61914804 MS.gene003000:intron
AATCAGGCTTTATGACATGT+GGG 0.582306 2.2:-61914046 None:intergenic
AACATTGGTCATGAATAGGA+TGG 0.583998 2.2:-61914661 None:intergenic
TTGTTTGTATCAAAATTTGT+TGG 0.593330 2.2:-61912951 None:intergenic
TATTTGAATTTCGAAAGCAT+TGG 0.595321 2.2:+61913261 MS.gene003000:CDS
GGGCACATAAGGCTCAAGAT+CGG 0.601082 2.2:+61914339 MS.gene003000:CDS
AGATCTTCAAACTTGTCAGA+AGG 0.605347 2.2:-61913927 None:intergenic
TAAGGCTCAAGATCGGAAAG+AGG 0.605735 2.2:+61914346 MS.gene003000:CDS
AATGCTCTCCAAGTAACCAT+AGG 0.613712 2.2:-61913347 None:intergenic
AAGGCTCAAGATCGGAAAGA+GGG 0.615328 2.2:+61914347 MS.gene003000:CDS
ACAACTAGCCAAGCAATCGA+TGG 0.616859 2.2:-61913423 None:intergenic
TCAGGCTTTATGACATGTGG+GGG 0.630295 2.2:-61914044 None:intergenic
TCTTCAAACTTGTCAGAAGG+TGG 0.634708 2.2:-61913924 None:intergenic
ATCAGGCTTTATGACATGTG+GGG 0.635513 2.2:-61914045 None:intergenic
TGTGCTCCAAAAGAACTTGG+AGG 0.649295 2.2:+61913035 MS.gene003000:CDS
ACACCAAGTCAGAAATCTCA+AGG 0.651808 2.2:+61914877 MS.gene003000:CDS
ACTCTTGAAATGGCAAGCAA+CGG 0.652429 2.2:-61913977 None:intergenic
TCACTGTGATATGGCAGATG+CGG 0.655612 2.2:+61914139 MS.gene003000:CDS
ATTTGGTGAATGTCTCAACA+TGG 0.656800 2.2:-61912983 None:intergenic
ATTCTTCAAAGGTTACAAGG+AGG 0.679618 2.2:+61913851 MS.gene003000:CDS
AACGGATAAACTCATCACAA+TGG 0.689117 2.2:-61913959 None:intergenic
AATTTCCATTAATCTCCAAG+GGG 0.708604 2.2:-61914391 None:intergenic
TCAAAAGAAACAGAAACTGG+TGG 0.714549 2.2:+61914440 MS.gene003000:CDS
ACACCTTCAAAAGAATCACA+AGG 0.716617 2.2:+61915098 MS.gene003000:CDS
ATAAACTCATCACAATGGCG+CGG 0.720209 2.2:-61913954 None:intergenic
GGCAAGAGAAGACAAACTTG+AGG 0.724823 2.2:+61915119 MS.gene003000:CDS
GGTTATGATTACATGCATGG+TGG 0.788197 2.2:+61912918 MS.gene003000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTATTAGAAAATTAAAAA+GGG + chr2.2:61914319-61914338 MS.gene003000:CDS 10.0%
!!! AATTGATTGATATTTTTTAA+TGG + chr2.2:61915234-61915253 MS.gene003000:intron 10.0%
!! AAAAATTAGATGCATATTTA+AGG + chr2.2:61914498-61914517 MS.gene003000:CDS 15.0%
!! AACTTTATATGCATATATTT+GGG + chr2.2:61913779-61913798 MS.gene003000:intron 15.0%
!! CTGTTATTAGAAAATTAAAA+AGG + chr2.2:61914318-61914337 MS.gene003000:CDS 15.0%
!! TAACTTTATATGCATATATT+TGG + chr2.2:61913778-61913797 MS.gene003000:intron 15.0%
!!! AGTAAACTTCTTTTTATATA+TGG + chr2.2:61913486-61913505 MS.gene003000:intron 15.0%
!! AAGTTTCAATACAAAAATAG+AGG + chr2.2:61912897-61912916 MS.gene003000:CDS 20.0%
!! CAATAGTCAAATAAAAACAT+TGG - chr2.2:61914679-61914698 None:intergenic 20.0%
!! GAAGAACATATAAAAATCTT+TGG + chr2.2:61913874-61913893 MS.gene003000:CDS 20.0%
!! GTAGAAAAAATACATGTATT+TGG + chr2.2:61914942-61914961 MS.gene003000:intron 20.0%
!! TAGAAACAATAAAGTAAATG+TGG - chr2.2:61914218-61914237 None:intergenic 20.0%
!! TTGTTTGTATCAAAATTTGT+TGG - chr2.2:61912954-61912973 None:intergenic 20.0%
!!! AAAAACACTTTTAAAGCATA+GGG - chr2.2:61913695-61913714 None:intergenic 20.0%
!!! AATTAGATTTTGAAGCTAAA+TGG - chr2.2:61913736-61913755 None:intergenic 20.0%
!!! CAAATAGCATTTCTTTTATA+AGG - chr2.2:61913247-61913266 None:intergenic 20.0%
!!! TACATTTAAAGTCATGTTTT+GGG + chr2.2:61913658-61913677 MS.gene003000:intron 20.0%
!!! TTTTGTTCAATAAATTTGAC+AGG + chr2.2:61914244-61914263 MS.gene003000:intron 20.0%
! AAATTTCCATTAATCTCCAA+GGG - chr2.2:61914395-61914414 None:intergenic 25.0%
! AACATATAAAAATCTTTGGC+CGG + chr2.2:61913878-61913897 MS.gene003000:CDS 25.0%
! CAAAAGAAAGAAAGACAAAA+AGG - chr2.2:61915172-61915191 None:intergenic 25.0%
! CCAAAAACTTATATTGCTTA+TGG + chr2.2:61914074-61914093 MS.gene003000:CDS 25.0%
! TAAAAACATTGGTCATGAAT+AGG - chr2.2:61914668-61914687 None:intergenic 25.0%
! TTTGATACAAACAATTCAGA+GGG + chr2.2:61912960-61912979 MS.gene003000:CDS 25.0%
!! AAAAGTATGCCTAAATTCTT+TGG - chr2.2:61914531-61914550 None:intergenic 25.0%
!! AAAATTAAAAAGGGCACATA+AGG + chr2.2:61914328-61914347 MS.gene003000:CDS 25.0%
!! AACTTCTTTGTTGGTTAATT+AGG + chr2.2:61914634-61914653 MS.gene003000:intron 25.0%
!! CCATAAGCAATATAAGTTTT+TGG - chr2.2:61914077-61914096 None:intergenic 25.0%
!! TATTTGAATTTCGAAAGCAT+TGG + chr2.2:61913261-61913280 MS.gene003000:CDS 25.0%
!! TTTTGAATTGTGTAAGTCTA+TGG + chr2.2:61913513-61913532 MS.gene003000:intron 25.0%
!! TTTTGATACAAACAATTCAG+AGG + chr2.2:61912959-61912978 MS.gene003000:CDS 25.0%
!!! GAAAAACACTTTTAAAGCAT+AGG - chr2.2:61913696-61913715 None:intergenic 25.0%
!!! GTACATTTAAAGTCATGTTT+TGG + chr2.2:61913657-61913676 MS.gene003000:intron 25.0%
!!! TATTTACGTTTTATTCCTTC+AGG + chr2.2:61913631-61913650 MS.gene003000:intron 25.0%
AAATGGAATGCTAATAGTGA+TGG + chr2.2:61913002-61913021 MS.gene003000:CDS 30.0%
AAGTCTATGGCATATTAATG+AGG + chr2.2:61913526-61913545 MS.gene003000:intron 30.0%
AATTTCCATTAATCTCCAAG+GGG - chr2.2:61914394-61914413 None:intergenic 30.0%
AGAACATCACGAACTATAAT+TGG - chr2.2:61913299-61913318 None:intergenic 30.0%
ATCACTATTAGCATTCCATT+TGG - chr2.2:61913003-61913022 None:intergenic 30.0%
CAAATTCTTCAAAGGTTACA+AGG + chr2.2:61913848-61913867 MS.gene003000:CDS 30.0%
CAAATTTCCATTAATCTCCA+AGG - chr2.2:61914396-61914415 None:intergenic 30.0%
CATGACTCTTAATCAATTAC+AGG + chr2.2:61914792-61914811 MS.gene003000:intron 30.0%
TAACCAACAAAGAAGTTAGT+GGG - chr2.2:61914631-61914650 None:intergenic 30.0%
TATGGAATCAAAGAAGAACT+TGG + chr2.2:61914092-61914111 MS.gene003000:CDS 30.0%
TGGTTGAAAAGGATGAATAT+TGG - chr2.2:61913805-61913824 None:intergenic 30.0%
TTAACCAACAAAGAAGTTAG+TGG - chr2.2:61914632-61914651 None:intergenic 30.0%
TTCGTGATGTTCTTAAACAA+GGG + chr2.2:61913306-61913325 MS.gene003000:CDS 30.0%
TTTATAAGGTCACTTGACAA+TGG - chr2.2:61913233-61913252 None:intergenic 30.0%
!! ATTTAAAGTCATGTTTTGGG+TGG + chr2.2:61913661-61913680 MS.gene003000:intron 30.0%
!! ATTTTCTGGTGAAACAAAGT+CGG - chr2.2:61915043-61915062 None:intergenic 30.0%
!! GTATCAAAATTTGTTGGTAG+AGG - chr2.2:61912948-61912967 None:intergenic 30.0%
!! TTGAATTCTTTGGCTCATTT+TGG + chr2.2:61913451-61913470 MS.gene003000:intron 30.0%
!!! ATTTTGACTCATACAACTGA+GGG + chr2.2:61914272-61914291 MS.gene003000:CDS 30.0%
!!! GTTTTTTTTAGCAAGTGAGT+CGG - chr2.2:61913578-61913597 None:intergenic 30.0%
!!! TATTTTGACTCATACAACTG+AGG + chr2.2:61914271-61914290 MS.gene003000:CDS 30.0%
AAATCAGGTATTCTCCCATT+TGG - chr2.2:61913101-61913120 None:intergenic 35.0%
AACACTCGCAAATTCTTCAA+AGG + chr2.2:61913840-61913859 MS.gene003000:CDS 35.0%
AACATTGGTCATGAATAGGA+TGG - chr2.2:61914664-61914683 None:intergenic 35.0%
AACGGATAAACTCATCACAA+TGG - chr2.2:61913962-61913981 None:intergenic 35.0%
AAGAAGCTAAAGGAAGAGTT+TGG + chr2.2:61914707-61914726 MS.gene003000:intron 35.0%
ACACCTTCAAAAGAATCACA+AGG + chr2.2:61915098-61915117 MS.gene003000:CDS 35.0%
ACATGTCATAAAGCCTGATT+TGG + chr2.2:61914049-61914068 MS.gene003000:CDS 35.0%
ACTAATTGCATGATGCATTG+AGG - chr2.2:61914760-61914779 None:intergenic 35.0%
AGAGGTTATGATTACATGCA+TGG + chr2.2:61912915-61912934 MS.gene003000:CDS 35.0%
AGATCTTCAAACTTGTCAGA+AGG - chr2.2:61913930-61913949 None:intergenic 35.0%
AGATGCTCAAGCTAAAAGAT+TGG + chr2.2:61913901-61913920 MS.gene003000:CDS 35.0%
ATCAAAGAAGAACTTGGAAG+AGG + chr2.2:61914098-61914117 MS.gene003000:CDS 35.0%
ATGTTGAGACATTCACCAAA+TGG + chr2.2:61912985-61913004 MS.gene003000:CDS 35.0%
ATTCTTCAAAGGTTACAAGG+AGG + chr2.2:61913851-61913870 MS.gene003000:CDS 35.0%
CACAAAACTTCACTGTGATA+TGG + chr2.2:61914130-61914149 MS.gene003000:CDS 35.0%
CATGTCATAAAGCCTGATTT+GGG + chr2.2:61914050-61914069 MS.gene003000:CDS 35.0%
CTTCATGATATACTGAGCTT+TGG - chr2.2:61913129-61913148 None:intergenic 35.0%
CTTCTAATTCTTGTACAGCT+TGG - chr2.2:61915294-61915313 None:intergenic 35.0%
GGAAACACTCCAAAGAATTT+AGG + chr2.2:61914519-61914538 MS.gene003000:CDS 35.0%
GTGTTAATTTCTACCTGCAA+TGG - chr2.2:61913825-61913844 None:intergenic 35.0%
GTTCGTGATGTTCTTAAACA+AGG + chr2.2:61913305-61913324 MS.gene003000:CDS 35.0%
GTTGTGAGGTTTGAATTCTT+TGG + chr2.2:61913441-61913460 MS.gene003000:intron 35.0%
TAATACAGTACCTGTTCAAC+TGG - chr2.2:61914560-61914579 None:intergenic 35.0%
TAATGAGGCCTACAACAAAT+TGG + chr2.2:61913541-61913560 MS.gene003000:intron 35.0%
TCAAAAGAAACAGAAACTGG+TGG + chr2.2:61914440-61914459 MS.gene003000:CDS 35.0%
TCAAGATAATATAGACCCCT+TGG + chr2.2:61914376-61914395 MS.gene003000:CDS 35.0%
TGAGCATAAGAAGAAGCTAA+AGG + chr2.2:61914697-61914716 MS.gene003000:CDS 35.0%
TGCTCAAAAGAAACAGAAAC+TGG + chr2.2:61914437-61914456 MS.gene003000:CDS 35.0%
TTCTTCAAAGGTTACAAGGA+GGG + chr2.2:61913852-61913871 MS.gene003000:CDS 35.0%
TTTCATTAGATGCTCATCAC+TGG + chr2.2:61915315-61915334 MS.gene003000:CDS 35.0%
! AAATCAGGCTTTATGACATG+TGG - chr2.2:61914050-61914069 None:intergenic 35.0%
! AATCAGGCTTTATGACATGT+GGG - chr2.2:61914049-61914068 None:intergenic 35.0%
! ATGCAGATATGCACATTTTC+TGG - chr2.2:61915057-61915076 None:intergenic 35.0%
! ATTTGGTGAATGTCTCAACA+TGG - chr2.2:61912986-61913005 None:intergenic 35.0%
! TGAGCTTTGGTTATCAAATC+AGG - chr2.2:61913116-61913135 None:intergenic 35.0%
! TTGCCTTGTGATTCTTTTGA+AGG - chr2.2:61915104-61915123 None:intergenic 35.0%
! TTTTTGTTCTCCAGTTGAAC+AGG + chr2.2:61914547-61914566 MS.gene003000:CDS 35.0%
!! AAGTTCCTCCAATTTGTTGT+AGG - chr2.2:61913552-61913571 None:intergenic 35.0%
!! TAAGTTTTTGGACCCAAATC+AGG - chr2.2:61914065-61914084 None:intergenic 35.0%
!! TTGAATTTCGAAAGCATTGG+AGG + chr2.2:61913264-61913283 MS.gene003000:CDS 35.0%
!! TTTTGACTCATACAACTGAG+GGG + chr2.2:61914273-61914292 MS.gene003000:CDS 35.0%
AAGTTTCTGCTCAAATGTCC+AGG - chr2.2:61914825-61914844 None:intergenic 40.0%
AATGCTCTCCAAGTAACCAT+AGG - chr2.2:61913350-61913369 None:intergenic 40.0%
ACACCAAGTCAGAAATCTCA+AGG + chr2.2:61914877-61914896 MS.gene003000:CDS 40.0%
ACTCTTGAAATGGCAAGCAA+CGG - chr2.2:61913980-61913999 None:intergenic 40.0%
AGTCCCACTAACTTCTTTGT+TGG + chr2.2:61914625-61914644 MS.gene003000:intron 40.0%
ATAAACTCATCACAATGGCG+CGG - chr2.2:61913957-61913976 None:intergenic 40.0%
ATAGACCCCTTGGAGATTAA+TGG + chr2.2:61914386-61914405 MS.gene003000:CDS 40.0%
CTTTAAATGTACACGCCTGA+AGG - chr2.2:61913649-61913668 None:intergenic 40.0%
GAAGCAGTATTTATTCCTGC+TGG + chr2.2:61914848-61914867 MS.gene003000:CDS 40.0%
GAATGTGCTCCAAAAGAACT+TGG + chr2.2:61913032-61913051 MS.gene003000:CDS 40.0%
GATGTTCTTAAACAAGGGAC+AGG + chr2.2:61913311-61913330 MS.gene003000:CDS 40.0%
GGTTATGATTACATGCATGG+TGG + chr2.2:61912918-61912937 MS.gene003000:CDS 40.0%
GTTTCGCTACACTCTTGAAA+TGG - chr2.2:61913990-61914009 None:intergenic 40.0%
TAAGGTCACTTGACAATGGA+CGG - chr2.2:61913229-61913248 None:intergenic 40.0%
TCAATTACAGGTGTAGAACC+TGG + chr2.2:61914804-61914823 MS.gene003000:intron 40.0%
TCTACCTGCAATGGTTGAAA+AGG - chr2.2:61913816-61913835 None:intergenic 40.0%
TCTTCAAACTTGTCAGAAGG+TGG - chr2.2:61913927-61913946 None:intergenic 40.0%
TGAAACGCATGCTTCCAAAT+GGG + chr2.2:61913084-61913103 MS.gene003000:CDS 40.0%
TGACCTTGAGATTTCTGACT+TGG - chr2.2:61914883-61914902 None:intergenic 40.0%
TGGACATTTGAGCAGAAACT+TGG + chr2.2:61914824-61914843 MS.gene003000:CDS 40.0%
! AGTAAAAGCCATCGATTGCT+TGG + chr2.2:61913415-61913434 MS.gene003000:CDS 40.0%
! ATCAGGCTTTATGACATGTG+GGG - chr2.2:61914048-61914067 None:intergenic 40.0%
! TCATCCTTTTCAACCATTGC+AGG + chr2.2:61913809-61913828 MS.gene003000:intron 40.0%
!! CTGTTTCTTTTGAGCACACT+TGG - chr2.2:61914433-61914452 None:intergenic 40.0%
!! TTGAAGGTGTCGAAACTCTT+CGG - chr2.2:61915088-61915107 None:intergenic 40.0%
!! TTGAGATTTCTGACTTGGTG+TGG - chr2.2:61914878-61914897 None:intergenic 40.0%
!! TTTCGAAAGCATTGGAGGAA+TGG + chr2.2:61913269-61913288 MS.gene003000:CDS 40.0%
!!! TCTTTTAGCTTGAGCATCTC+CGG - chr2.2:61913900-61913919 None:intergenic 40.0%
AACAAGGGACAGGTTTGAGT+TGG + chr2.2:61913321-61913340 MS.gene003000:CDS 45.0%
AAGGCTCAAGATCGGAAAGA+GGG + chr2.2:61914347-61914366 MS.gene003000:CDS 45.0%
ACAACTAGCCAAGCAATCGA+TGG - chr2.2:61913426-61913445 None:intergenic 45.0%
CCAAAAGAACTTGGAGGTTG+TGG + chr2.2:61913041-61913060 MS.gene003000:CDS 45.0%
CTGAAACGCATGCTTCCAAA+TGG + chr2.2:61913083-61913102 MS.gene003000:CDS 45.0%
GGCAAGAGAAGACAAACTTG+AGG + chr2.2:61915119-61915138 MS.gene003000:CDS 45.0%
TAAGGCTCAAGATCGGAAAG+AGG + chr2.2:61914346-61914365 MS.gene003000:CDS 45.0%
TCACTGTGATATGGCAGATG+CGG + chr2.2:61914139-61914158 MS.gene003000:CDS 45.0%
TGAGGCCTACAACAAATTGG+AGG + chr2.2:61913544-61913563 MS.gene003000:intron 45.0%
TGTGCTCCAAAAGAACTTGG+AGG + chr2.2:61913035-61913054 MS.gene003000:CDS 45.0%
TTGTGGCTGTGGTTGTGTTA+TGG + chr2.2:61913058-61913077 MS.gene003000:CDS 45.0%
! ACAAGGGACAGGTTTGAGTT+GGG + chr2.2:61913322-61913341 MS.gene003000:CDS 45.0%
! AGAAACTGGTGGTGCTCTTT+GGG + chr2.2:61914451-61914470 MS.gene003000:CDS 45.0%
! CCACAACCTCCAAGTTCTTT+TGG - chr2.2:61913044-61913063 None:intergenic 45.0%
! TCAGGCTTTATGACATGTGG+GGG - chr2.2:61914047-61914066 None:intergenic 45.0%
! TTGTGCGCAAATTTGGCTTC+AGG + chr2.2:61913368-61913387 MS.gene003000:CDS 45.0%
!! GAGAGCATTGTGCGCAAATT+TGG + chr2.2:61913361-61913380 MS.gene003000:CDS 45.0%
GCAACTTTGCAGCAAGGTTG+AGG - chr2.2:61914025-61914044 None:intergenic 50.0%
GGGCACATAAGGCTCAAGAT+CGG + chr2.2:61914339-61914358 MS.gene003000:CDS 50.0%
GTTGGGAGCCTATGGTTACT+TGG + chr2.2:61913339-61913358 MS.gene003000:CDS 50.0%
! CAGAAACTGGTGGTGCTCTT+TGG + chr2.2:61914450-61914469 MS.gene003000:CDS 50.0%
! CGATTGCTTGGCTAGTTGTG+AGG + chr2.2:61913427-61913446 MS.gene003000:CDS 50.0%
!! AGGTTTGAGTTGGGAGCCTA+TGG + chr2.2:61913331-61913350 MS.gene003000:CDS 50.0%
GAACTTGGAGGTTGTGGCTG+TGG + chr2.2:61913047-61913066 MS.gene003000:CDS 55.0%
GAGTGTAGCGAAACTCGAGC+TGG + chr2.2:61913996-61914015 MS.gene003000:CDS 55.0%
!! ACTTGGTGTGGACATCCAGC+AGG - chr2.2:61914866-61914885 None:intergenic 55.0%
GTGGGGGCAACTTTGCAGCA+AGG - chr2.2:61914031-61914050 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 61912894 61915342 61912894 ID=MS.gene003000
chr2.2 mRNA 61912894 61915342 61912894 ID=MS.gene003000.t1;Parent=MS.gene003000
chr2.2 exon 61912894 61913448 61912894 ID=MS.gene003000.t1.exon1;Parent=MS.gene003000.t1
chr2.2 CDS 61912894 61913448 61912894 ID=cds.MS.gene003000.t1;Parent=MS.gene003000.t1
chr2.2 exon 61913831 61914160 61913831 ID=MS.gene003000.t1.exon2;Parent=MS.gene003000.t1
chr2.2 CDS 61913831 61914160 61913831 ID=cds.MS.gene003000.t1;Parent=MS.gene003000.t1
chr2.2 exon 61914266 61914568 61914266 ID=MS.gene003000.t1.exon3;Parent=MS.gene003000.t1
chr2.2 CDS 61914266 61914568 61914266 ID=cds.MS.gene003000.t1;Parent=MS.gene003000.t1
chr2.2 exon 61914656 61914723 61914656 ID=MS.gene003000.t1.exon4;Parent=MS.gene003000.t1
chr2.2 CDS 61914656 61914723 61914656 ID=cds.MS.gene003000.t1;Parent=MS.gene003000.t1
chr2.2 exon 61914814 61914898 61914814 ID=MS.gene003000.t1.exon5;Parent=MS.gene003000.t1
chr2.2 CDS 61914814 61914898 61914814 ID=cds.MS.gene003000.t1;Parent=MS.gene003000.t1
chr2.2 exon 61915021 61915140 61915021 ID=MS.gene003000.t1.exon6;Parent=MS.gene003000.t1
chr2.2 CDS 61915021 61915140 61915021 ID=cds.MS.gene003000.t1;Parent=MS.gene003000.t1
chr2.2 exon 61915262 61915342 61915262 ID=MS.gene003000.t1.exon7;Parent=MS.gene003000.t1
chr2.2 CDS 61915262 61915342 61915262 ID=cds.MS.gene003000.t1;Parent=MS.gene003000.t1
Gene Sequence

>MS.gene003000

ATGAAGTTTCAATACAAAAATAGAGGTTATGATTACATGCATGGTGGTGATCCTCTACCAACAAATTTTGATACAAACAATTCAGAGGGCCATGTTGAGACATTCACCAAATGGAATGCTAATAGTGATGGAAGTGTTGAATGTGCTCCAAAAGAACTTGGAGGTTGTGGCTGTGGTTGTGTTATGGAGCTGAAACGCATGCTTCCAAATGGGAGAATACCTGATTTGATAACCAAAGCTCAGTATATCATGAAGTATTTTTGCAATATTGAAGAGAAAATGAATGTTCAGAAAGAAGTAGTGTCAAGTTGCAAGAATGAGAATAATGTCTACCGTCCATTGTCAAGTGACCTTATAAAAGAAATGCTATTTGAATTTCGAAAGCATTGGAGGAATGGTGAACCAATTATAGTTCGTGATGTTCTTAAACAAGGGACAGGTTTGAGTTGGGAGCCTATGGTTACTTGGAGAGCATTGTGCGCAAATTTGGCTTCAGGTGTCAGCGCAAATTCTAAGTCAGAAGTAAAAGCCATCGATTGCTTGGCTAGTTGTGAGGTTTGAATTCTTTGGCTCATTTTGGTGATTTGATACTAGTAAACTTCTTTTTATATATGGTTGATTTTGAATTGTGTAAGTCTATGGCATATTAATGAGGCCTACAACAAATTGGAGGAACTTTTTCCGACTCACTTGCTAAAAAAAACGTATTTTTAAAAGTGTACTTTCAGACGACACAATATTTACGTTTTATTCCTTCAGGCGTGTACATTTAAAGTCATGTTTTGGGTGGAAAAAGTTCCCTATGCTTTAAAAGTGTTTTTCTCTCATGCTTTAGAATACCATTTAGCTTCAAAATCTAATTCATTCTTAATATTATAGTATTTTAACTTTATATGCATATATTTGGGCCAATATTCATCCTTTTCAACCATTGCAGGTAGAAATTAACACTCGCAAATTCTTCAAAGGTTACAAGGAGGGAAGAACATATAAAAATCTTTGGCCGGAGATGCTCAAGCTAAAAGATTGGCCACCTTCTGACAAGTTTGAAGATCTTTTGCCGCGCCATTGTGATGAGTTTATCCGTTGCTTGCCATTTCAAGAGTGTAGCGAAACTCGAGCTGGAATCCTCAACCTTGCTGCAAAGTTGCCCCCACATGTCATAAAGCCTGATTTGGGTCCAAAAACTTATATTGCTTATGGAATCAAAGAAGAACTTGGAAGAGGAGATTCTGTCACAAAACTTCACTGTGATATGGCAGATGCGGTATGCTACATTATATTATAAGTTGTTATGTAATTTTCAAAGTATAAAATTGCACCACATTTACTTTATTGTTTCTAAACTTTTTTTGTTCAATAAATTTGACAGGTGAATATTTTGACTCATACAACTGAGGGGAAATTAACTGATGAACAACATTCTGTTATTAGAAAATTAAAAAGGGCACATAAGGCTCAAGATCGGAAAGAGGGTCGTGCTCAAGATAATATAGACCCCTTGGAGATTAATGGAAATTTGTTTGAAAATGAAGTCCAAGTGTGCTCAAAAGAAACAGAAACTGGTGGTGCTCTTTGGGACATATTCAGAAGAGAAGATACTGAAAAATTAGATGCATATTTAAGGAAACACTCCAAAGAATTTAGGCATACTTTTTGTTCTCCAGTTGAACAGGTACTGTATTATCACATTTAATATACATTGTACTTATCTTAATTTTTGCTTGTTTTAGTCCCACTAACTTCTTTGTTGGTTAATTAGGTTGTCCATCCTATTCATGACCAATGTTTTTATTTGACTATTGAGCATAAGAAGAAGCTAAAGGAAGAGTTTGGTTAGTATATAGAATTTTAAACTTTCTACCTCAATGCATCATGCAATTAGTTATTGTTATTTACATGACTCTTAATCAATTACAGGTGTAGAACCTGGACATTTGAGCAGAAACTTGGTGAAGCAGTATTTATTCCTGCTGGATGTCCACACCAAGTCAGAAATCTCAAGGTCAAACATCTCTTATCATATACTCGCTTTGAACTTAAAATGAGTAGAAAAAATACATGTATTTGGTTGTTAATTGATTGTATCTATAATTAATAACACTAATCATTTGTATAATGTTGCAGTCATGCACAAAAGTTGCTGCCGACTTTGTTTCACCAGAAAATGTGCATATCTGCATGCTTTTAACCGAAGAGTTTCGACACCTTCAAAAGAATCACAAGGCAAGAGAAGACAAACTTGAGGTGATTTGAATATATATTATAACATATTCCTTTTTGTCTTTCTTTCTTTTGATGTGAATTTCAAACTAATTAATTAAGTTGAAAAAGAGAAATAATTGATTGATATTTTTTAATGGAACAGATAAAGAAGATAATAGTCTATGCTGTTGACCAAGCTGTACAAGAATTAGAAGATTTCATTAGATGCTCATCACTGGCTTGA
Protein sequence

>MS.gene003000.t1

MKFQYKNRGYDYMHGGDPLPTNFDTNNSEGHVETFTKWNANSDGSVECAPKELGGCGCGCVMELKRMLPNGRIPDLITKAQYIMKYFCNIEEKMNVQKEVVSSCKNENNVYRPLSSDLIKEMLFEFRKHWRNGEPIIVRDVLKQGTGLSWEPMVTWRALCANLASGVSANSKSEVKAIDCLASCEVEINTRKFFKGYKEGRTYKNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRCLPFQECSETRAGILNLAAKLPPHVIKPDLGPKTYIAYGIKEELGRGDSVTKLHCDMADAVNILTHTTEGKLTDEQHSVIRKLKRAHKAQDRKEGRAQDNIDPLEINGNLFENEVQVCSKETETGGALWDIFRREDTEKLDAYLRKHSKEFRHTFCSPVEQVVHPIHDQCFYLTIEHKKKLKEECRTWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAADFVSPENVHICMLLTEEFRHLQKNHKAREDKLEIKKIIVYAVDQAVQELEDFIRCSSLA