AlfalfaGEDB | MS.gene003123

M. sativa cultivar XinJiangDaYe / MS.gene003123

KEGG: K08065
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0046982 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00808.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003123.t1	XP_004486346.1	89.3	84	4	2	1	80	1	83	2.00E-30	141.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003123.t1	O23310	79.5	88	9	2	1	80	1	87	5.0e-30	131.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003123.t1	I3TAX1	89.3	84	4	2	1	80	1	83	1.4e-30	141.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene003123.t1	TF	NF-YB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003123.t1	MTR_2g026710	86.207	87	7	2	1	83	1	86	1.20e-46	146
MS.gene003123.t1	MTR_5g095740	76.344	93	11	2	1	83	1	92	1.20e-43	139
MS.gene003123.t1	MTR_3g058980	72.165	97	12	2	1	83	1	96	2.93e-42	136
MS.gene003123.t1	MTR_8g091720	81.818	77	13	1	7	83	22	97	7.46e-40	130
MS.gene003123.t1	MTR_7g100650	81.944	72	12	1	12	83	25	95	3.94e-38	125
MS.gene003123.t1	MTR_7g061270	81.944	72	12	1	12	83	25	95	3.96e-38	125
MS.gene003123.t1	MTR_4g133938	73.034	89	17	3	1	83	1	88	2.42e-37	122
MS.gene003123.t1	MTR_1g072790	75.000	76	18	1	8	83	24	98	1.57e-36	121
MS.gene003123.t1	MTR_8g093920	77.778	72	15	1	12	83	39	109	5.54e-36	120
MS.gene003123.t1	MTR_0392s0020	71.233	73	21	0	2	74	7	79	2.81e-34	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003123.t1	AT4G14540	76.923	91	12	2	1	83	1	90	9.46e-44	139
MS.gene003123.t1	AT5G47640	89.855	69	6	1	12	80	26	93	3.47e-39	128
MS.gene003123.t1	AT2G38880	72.289	83	21	2	2	83	9	90	1.76e-37	122
MS.gene003123.t1	AT2G38880	72.289	83	21	2	2	83	9	90	2.71e-37	122
MS.gene003123.t1	AT2G38880	72.289	83	21	2	2	83	9	90	3.28e-37	122
MS.gene003123.t1	AT2G38880	72.289	83	21	2	2	83	9	90	3.28e-37	122
MS.gene003123.t1	AT2G38880	72.289	83	21	2	2	83	9	90	3.28e-37	122
MS.gene003123.t1	AT2G38880	75.000	80	18	2	2	80	9	87	4.45e-37	120
MS.gene003123.t1	AT2G38880	72.289	83	21	2	2	83	9	90	1.05e-36	121
MS.gene003123.t1	AT2G38880	72.289	83	21	2	2	83	9	90	1.05e-36	121

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Find 13 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTATGGATGGTGGTT+TGG	0.443613	2.2:-60261117	MS.gene003123:CDS
ATAAGTGTCAGAAAGAGAAG+AGG	0.567471	2.2:-60261670	MS.gene003123:CDS
ATCCTACTCACGTTTGCTAT+TGG	0.294063	2.2:+60261800	None:intergenic
CAGGTTGCAGAGAGCAAGAT+AGG	0.404952	2.2:-60261829	MS.gene003123:CDS
CAGTGAAACATTATGGATGG+TGG	0.597619	2.2:-60261122	MS.gene003123:CDS
CGTGAGTAGGATCATGAAAA+AGG	0.331544	2.2:-60261789	MS.gene003123:CDS
GAATCAGACAATGAGTCAGC+AGG	0.557061	2.2:-60261848	MS.gene003123:CDS
GAGAAGAGGAAAACAATCAA+CGG	0.615125	2.2:-60261656	MS.gene003123:intron
GAGGGTACAGTGAAACATTA+TGG	0.444819	2.2:-60261129	MS.gene003123:CDS
GAGTTCATCAGTTTCATAAC+AGG	0.366706	2.2:-60261704	MS.gene003123:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCATCATCATCATAGAAGA+TGG	+	chr2.2:60261519-60261538	None:intergenic	30.0%
GACATAATATGTATGGATCT+GGG	-	chr2.2:60261541-60261560	MS.gene003123:intron	30.0%
TTGCTCATTATGATCTTATC+TGG	+	chr2.2:60261622-60261641	None:intergenic	30.0%
TTTGAGTAAGTATAGAGAGA+TGG	-	chr2.2:60261398-60261417	MS.gene003123:intron	30.0%
AGTAAGTATAGAGAGATGGA+AGG	-	chr2.2:60261402-60261421	MS.gene003123:intron	35.0%
ATAAGTGTCAGAAAGAGAAG+AGG	-	chr2.2:60261295-60261314	MS.gene003123:intron	35.0%
GAGAAGAGGAAAACAATCAA+CGG	-	chr2.2:60261309-60261328	MS.gene003123:intron	35.0%
GAGTTCATCAGTTTCATAAC+AGG	-	chr2.2:60261261-60261280	MS.gene003123:intron	35.0%
GGACATAATATGTATGGATC+TGG	-	chr2.2:60261540-60261559	MS.gene003123:intron	35.0%
GTACAGTGAAACATTATGGA+TGG	-	chr2.2:60261840-60261859	MS.gene003123:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	60261111	60261876	60261111	ID=MS.gene003123
chr2.2	mRNA	60261111	60261876	60261111	ID=MS.gene003123.t1;Parent=MS.gene003123
chr2.2	exon	60261657	60261876	60261657	ID=MS.gene003123.t1.exon1;Parent=MS.gene003123.t1
chr2.2	CDS	60261657	60261876	60261657	ID=cds.MS.gene003123.t1;Parent=MS.gene003123.t1
chr2.2	exon	60261111	60261148	60261111	ID=MS.gene003123.t1.exon2;Parent=MS.gene003123.t1
chr2.2	CDS	60261111	60261148	60261111	ID=cds.MS.gene003123.t1;Parent=MS.gene003123.t1

Gene Sequence

>MS.gene003123

ATGGCTGAATCAGACAATGAGTCAGCAGGTTGCAGAGAGCAAGATAGGTTTCTTCCAATAGCAAACGTGAGTAGGATCATGAAAAAGGCTTTACCAGCAAACGCAAAGATCTCAAAAGAAGCAAAAGAAACAGTGCAAGAGTGTGTATCAGAGTTCATCAGTTTCATAACAGGAGAAGCTTCTGATAAGTGTCAGAAAGAGAAGAGGAAAACAATCAACGGTGATGATCTTCTTTGGGCTATGACAACTCTTGGATTTGAAGATTATGTTGAGCCACTCAAGATTTATTTGAGTAAGTATAGAGAGATGGAAGGAGAGAAGAGTGCGATGATTGGTAGGAGTGATCAGAGAGATGGAAATGTTGGTGAGGGTAGTGGTGGAGTTTATGGTCATGGAGTTGGAGTTCCATCTTCTATGATGATGATGATGGGACATAATATGTATGGATCTGGGAGTGGATCGCCATCTTCTGGAAGGAGTACTCGATAGCAGAGACCAATCTCTTGAGCCAGATAAGATCATAATGAGCAAGAAACTTCTGTCTTAAGAATTTTAACCTTGTTGCAATCTTAAAGAATACAAACTTAAGACCTATGATTAAACTGAAAGAAATTCGAGTCATCTCATCTAGACAACAAGTTTATGTATGCATATGTTTGATATAAATTCATGTATTTTTTAATTTAGAGTACCCTAGATATATTGTTGCAATTTAATTTGTTGTTGAGGGTACAGTGAAACATTATGGATGGTGGTTTGGAATTAA

Protein sequence

>MS.gene003123.t1

MAESDNESAGCREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGYSETLWMVVWN