AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00313

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00313.t1 MTR_8g040560 55.556 207 90 1 216 420 735 941 4.25e-63 226
MS.gene00313.t1 MTR_8g040560 52.041 196 89 2 415 606 744 938 4.27e-48 182
MS.gene00313.t1 MTR_8g040560 44.712 208 85 7 27 213 448 646 1.77e-39 156
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00313.t1 AT3G12280 47.143 210 92 4 216 420 726 921 1.20e-48 184
MS.gene00313.t1 AT3G12280 44.749 219 87 7 11 207 426 632 7.79e-43 166
MS.gene00313.t1 AT3G12280 46.939 196 88 7 415 606 735 918 8.28e-37 147
MS.gene00313.t1 AT3G12280 47.143 210 92 4 216 420 726 921 1.21e-48 184
MS.gene00313.t1 AT3G12280 44.749 219 87 7 11 207 426 632 7.80e-43 166
MS.gene00313.t1 AT3G12280 46.939 196 88 7 415 606 735 918 8.29e-37 147

Find 150 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAACTGAACCTGAGTTTC+TGG 0.137982 2.1:+56408530 MS.gene00313:CDS
CTTGGGAAAGTTAATATTTC+AGG 0.148410 2.1:-56409905 None:intergenic
GGAGAGCATGGCATGGAAAA+AGG 0.224771 2.1:+56407692 MS.gene00313:CDS
TTCATTCAAAGAACAACTTT+TGG 0.245558 2.1:+56407671 MS.gene00313:CDS
AGTATTTCATGTAGTGTTTC+GGG 0.247285 2.1:-56407432 None:intergenic
AGACTATATTTCCTGATAAT+TGG 0.251144 2.1:+56407325 MS.gene00313:CDS
AATCAACAACTTCAGCTAAT+TGG 0.265538 2.1:-56408765 None:intergenic
TTCGGTTAATGAATCAGATT+TGG 0.268352 2.1:-56411007 None:intergenic
TGTTTCGGGCTCCTTCTTCT+TGG 0.285142 2.1:-56407418 None:intergenic
TTTCTATTCGGCCAATTATC+AGG 0.291015 2.1:-56407336 None:intergenic
TATGAAAATCGGAGAAGATA+TGG 0.312395 2.1:-56409350 None:intergenic
AGAGGTGTGTCCGCTGGTTT+AGG 0.315056 2.1:-56408366 None:intergenic
TTGGGAGCAGTCAGAATAAA+TGG 0.315321 2.1:+56409246 MS.gene00313:CDS
ATACGTCCTCCCTTGTCCTT+TGG 0.323788 2.1:-56408324 None:intergenic
TAGTATTTCATGTAGTGTTT+CGG 0.335939 2.1:-56407433 None:intergenic
TGCTGCTGGTGCGAGTTATT+TGG 0.349200 2.1:-56407512 None:intergenic
CACATGCAAGCAAACATCTA+TGG 0.358139 2.1:-56407470 None:intergenic
TACGTCCTCCCTTGTCCTTT+GGG 0.358218 2.1:-56408323 None:intergenic
AATCTTCGGATCTTTCTATT+CGG 0.373694 2.1:-56407348 None:intergenic
AGATATGGGGTCGTAGAGTT+AGG 0.375966 2.1:-56409335 None:intergenic
AGTACCTCAGATGATGAAAA+TGG 0.376291 2.1:-56409010 None:intergenic
GATTTGGGCTCGAAGAGTTC+AGG 0.378460 2.1:-56410991 None:intergenic
GAATGTATACCATCTCTTCC+AGG 0.390572 2.1:+56409308 MS.gene00313:CDS
TTCATAGTGAATTTGCTGAT+TGG 0.403484 2.1:+56409574 MS.gene00313:CDS
AAGATTTCCTGTTATGCATT+GGG 0.406154 2.1:+56408952 MS.gene00313:CDS
CTACATTTCGTTGTGAAGTT+GGG 0.407614 2.1:-56407224 None:intergenic
CTATAATCCCTGGAAAAGTT+AGG 0.408836 2.1:-56409512 None:intergenic
GCATGCCTAGACCCGTCATA+TGG 0.410401 2.1:+56409603 MS.gene00313:CDS
GGAAGCAACACAAAATGATT+TGG 0.411763 2.1:-56409377 None:intergenic
AAAACTGAACCTGAGTTTCT+GGG 0.413033 2.1:+56408531 MS.gene00313:CDS
CATCTTTGTCACAGTGCTGC+TGG 0.413867 2.1:-56407526 None:intergenic
CAATGCATAACAGGAAATCT+TGG 0.415525 2.1:-56408950 None:intergenic
TCTGTGGCTTATCATCATTA+TGG 0.417278 2.1:-56408642 None:intergenic
TACTTTATACTATACAGTAT+TGG 0.418535 2.1:+56407380 MS.gene00313:CDS
TGTTTCTCAGATCAGTATGT+TGG 0.421499 2.1:+56408258 MS.gene00313:intron
TCTACATTTCGTTGTGAAGT+TGG 0.424113 2.1:-56407225 None:intergenic
TCGGTTAATGAATCAGATTT+GGG 0.425567 2.1:-56411006 None:intergenic
GATTTGGTCAATATGAAAAT+CGG 0.430588 2.1:-56409361 None:intergenic
TATGGCCCGCGCCCGCCAAT+GGG 0.433969 2.1:-56408624 None:intergenic
CTGCACTATATTATGTGCTC+TGG 0.435506 2.1:-56407304 None:intergenic
AATTGTAGCGGTTTGACTAC+AGG 0.438497 2.1:-56411046 None:intergenic
TATGCATGTGTCTCTCCAAT+AGG 0.440195 2.1:+56409968 MS.gene00313:CDS
CAAGATTTCCTGTTATGCAT+TGG 0.442326 2.1:+56408951 MS.gene00313:CDS
AGAAGTCGACTGAAGTATCC+TGG 0.442610 2.1:-56407645 None:intergenic
GCTCAGGACATTGAGCTAGA+TGG 0.442938 2.1:-56409880 None:intergenic
GTTAATATTTCAGGAGGCTC+AGG 0.444282 2.1:-56409896 None:intergenic
TCTTGAAATCATACGCATCA+TGG 0.444821 2.1:+56407253 MS.gene00313:CDS
GATTGCCCATTGGCGGGCGC+GGG 0.447736 2.1:+56408619 MS.gene00313:CDS
GTTTCTCAGATCAGTATGTT+GGG 0.449448 2.1:+56408259 MS.gene00313:intron
ATGAAAATCGGAGAAGATAT+GGG 0.451100 2.1:-56409349 None:intergenic
CGGGCTCCTTCTTCTTGGCT+CGG 0.455002 2.1:-56407413 None:intergenic
TGATTGCCCATTGGCGGGCG+CGG 0.456069 2.1:+56408618 MS.gene00313:CDS
CGACAGCAGCGGCTTTACAT+AGG 0.459406 2.1:-56409688 None:intergenic
ATCTGTATGGCCACTGGTGA+TGG 0.459470 2.1:+56408708 MS.gene00313:CDS
AGCTGAAGTTGTTGATTCAA+AGG 0.461689 2.1:+56408771 MS.gene00313:CDS
CTCTCCAATACATCATCAGC+AGG 0.462992 2.1:-56407552 None:intergenic
ACACAAGACATTGAGCTAGA+TGG 0.464043 2.1:-56408907 None:intergenic
CTGTGGTTGCAGTTTATAGC+TGG 0.464811 2.1:-56409535 None:intergenic
AAGTAAGTGTATCAAATCTT+CGG 0.469338 2.1:-56407362 None:intergenic
AGTACCTCAGATGATCCTAT+TGG 0.469550 2.1:-56409983 None:intergenic
TGTTTCCTAGATCATTATGT+TGG 0.470021 2.1:+56409227 MS.gene00313:intron
GACGGTTGATTTCCTCTGAA+AGG 0.471928 2.1:-56407755 None:intergenic
GTTTCCTAGATCATTATGTT+GGG 0.473365 2.1:+56409228 MS.gene00313:intron
TTATGGCCCGCGCCCGCCAA+TGG 0.482127 2.1:-56408625 None:intergenic
CGCTCCATCTGTATGGCCAC+TGG 0.485239 2.1:+56408702 MS.gene00313:CDS
ACGGTTGATTTCCTCTGAAA+GGG 0.485458 2.1:-56407754 None:intergenic
TTTGTTGATTGCCCATTGGC+GGG 0.491247 2.1:+56408613 MS.gene00313:CDS
TCATAGTTTCTGCTGCCTCC+AGG 0.491389 2.1:-56407827 None:intergenic
AGAATAGTTTCATTGAATGA+TGG 0.491623 2.1:-56407801 None:intergenic
TTATAGCTGGCTATAATCCC+TGG 0.492789 2.1:-56409522 None:intergenic
ACATATTCGCTCCATCTGTA+TGG 0.497154 2.1:+56408695 MS.gene00313:CDS
CAATATGACGATTGAAGAAG+AGG 0.503895 2.1:-56408384 None:intergenic
GTCGTAGAGTTAGGATTCCC+TGG 0.506048 2.1:-56409326 None:intergenic
GACAGCAGCGGCTTTACATA+GGG 0.508885 2.1:-56409687 None:intergenic
GTTCCCTGCTGATGATGTAT+TGG 0.508997 2.1:+56407548 MS.gene00313:CDS
AGACATGAAGACTCTTTCCC+AGG 0.509550 2.1:+56407627 MS.gene00313:CDS
TCAGAGGAAATCAACCGTCT+TGG 0.513122 2.1:+56407759 MS.gene00313:CDS
AATGCATAACAGGAAATCTT+GGG 0.514779 2.1:-56408949 None:intergenic
GAAGTTGTTGATTCAAAGGA+TGG 0.517332 2.1:+56408775 MS.gene00313:CDS
TGAAGAAGAGGTGTGTCCGC+TGG 0.517765 2.1:-56408372 None:intergenic
ATTTGTTGATTGCCCATTGG+CGG 0.524796 2.1:+56408612 MS.gene00313:CDS
GACTACAGGGAGGGAAATAG+AGG 0.529169 2.1:-56411032 None:intergenic
CTTGAAATCATACGCATCAT+GGG 0.533418 2.1:+56407254 MS.gene00313:CDS
CATGCCTAGACCCGTCATAT+GGG 0.538915 2.1:+56409604 MS.gene00313:CDS
ATTGTAGCGGTTTGACTACA+GGG 0.539516 2.1:-56411045 None:intergenic
TACAATTATCCCAAAGGACA+AGG 0.539877 2.1:+56408314 MS.gene00313:CDS
TTGCTTCTATGTAGTCGCAC+AGG 0.540096 2.1:+56408423 MS.gene00313:CDS
CAGACATAACAGGAAGGCTT+GGG 0.541418 2.1:-56409922 None:intergenic
ATCACCAGTGGCCATACAGA+TGG 0.542017 2.1:-56408706 None:intergenic
GGGAGGGAAATAGAGGCATT+CGG 0.543422 2.1:-56411025 None:intergenic
CCGTCATATGGGAAAACAAA+GGG 0.546044 2.1:+56409615 MS.gene00313:CDS
ACAGACATAACAGGAAGGCT+TGG 0.546125 2.1:-56409923 None:intergenic
TGAATTTGCTGATTGGCCAT+TGG 0.549842 2.1:+56409581 MS.gene00313:CDS
AAGCCTTCCTGTTATGTCTG+TGG 0.553212 2.1:+56409925 MS.gene00313:CDS
TCCCACATCAATGTCTTACC+AGG 0.554424 2.1:-56407198 None:intergenic
TTAGGATTCCCTGGAAGAGA+TGG 0.561052 2.1:-56409317 None:intergenic
ATCATACGCATCATGGGGCG+AGG 0.568090 2.1:+56407260 MS.gene00313:CDS
AAAACGGGTGACCTGCACTC+TGG 0.568545 2.1:-56408580 None:intergenic
AATGTATACCATCTCTTCCA+GGG 0.569069 2.1:+56409309 MS.gene00313:CDS
TGTATTTGTTGATTGCCCAT+TGG 0.569139 2.1:+56408609 MS.gene00313:CDS
CTATGTAAAGCCGCTGCTGT+CGG 0.569655 2.1:+56409689 MS.gene00313:CDS
TGCTAGACCGTCCCTTTCAG+AGG 0.571805 2.1:+56407743 MS.gene00313:CDS
ACAAACAGCAACCAGAGTGC+AGG 0.572144 2.1:+56408569 MS.gene00313:CDS
GTTTCATTGAATGATGGCAT+TGG 0.572221 2.1:-56407795 None:intergenic
CAATGAAACTATTCTCGACC+TGG 0.573458 2.1:+56407809 MS.gene00313:CDS
AGTTATTTGGAGTACTTGAT+CGG 0.575426 2.1:-56407499 None:intergenic
TCAGATCAGTATGTTGGGAG+CGG 0.579103 2.1:+56408264 MS.gene00313:intron
TTGCTTCCGTGCAGTTGCAA+AGG 0.581575 2.1:+56409392 MS.gene00313:CDS
ATAATTCCAACACGCTTCTG+TGG 0.584901 2.1:-56408658 None:intergenic
GATAAGCCACAGAAGCGTGT+TGG 0.585393 2.1:+56408652 MS.gene00313:CDS
GGGAAAGTTAATATTTCAGG+AGG 0.586410 2.1:-56409902 None:intergenic
GAATACGCGGCATGGCTGAA+AGG 0.587007 2.1:+56408290 MS.gene00313:CDS
TCTAATGAAACTTGTGGTGA+TGG 0.591624 2.1:-56407607 None:intergenic
GTACAATCTCCCAGAAACTC+AGG 0.592499 2.1:-56408540 None:intergenic
CAAGAACCTTTGCAACTGCA+CGG 0.594438 2.1:-56409398 None:intergenic
TGTGTGCCGAGCCAAGAAGA+AGG 0.595093 2.1:+56407407 MS.gene00313:CDS
CTACAACTATCTCAGCAGAC+AGG 0.595751 2.1:+56409282 MS.gene00313:CDS
AGCGGTCAGAATACGCGGCA+TGG 0.598188 2.1:+56408282 MS.gene00313:CDS
TTGATTTCCTCTGAAAGGGA+CGG 0.607373 2.1:-56407750 None:intergenic
GAAGTCGACTGAAGTATCCT+GGG 0.612687 2.1:-56407644 None:intergenic
GACGGGTCTAGGCATGCCAA+TGG 0.617781 2.1:-56409597 None:intergenic
ATAACAGGAAATCTTGGGAA+AGG 0.622579 2.1:-56408944 None:intergenic
CTTCCACAGACATAACAGGA+AGG 0.636074 2.1:-56409928 None:intergenic
TAGCGGTTTGACTACAGGGA+GGG 0.640113 2.1:-56411041 None:intergenic
AGCAGTCAGAATAAATGGCA+TGG 0.640293 2.1:+56409251 MS.gene00313:CDS
ACTGTTATAGGTCTGCTAGT+AGG 0.644936 2.1:-56411070 None:intergenic
AAAGGCTACAATTATCCCAA+AGG 0.645341 2.1:+56408308 MS.gene00313:CDS
TGAAAATCGGAGAAGATATG+GGG 0.645893 2.1:-56409348 None:intergenic
GTTGAGCAAACAGTCCAAGA+CGG 0.655365 2.1:-56407773 None:intergenic
GAATTCATTAACAAAGCCGA+TGG 0.655551 2.1:+56409756 MS.gene00313:CDS
TGACAAAGAGTTATACAATG+AGG 0.657399 2.1:-56407718 None:intergenic
CTCTCCAATAGGATCATCTG+AGG 0.660685 2.1:+56409979 MS.gene00313:CDS
ACAATTATCCCAAAGGACAA+GGG 0.662029 2.1:+56408315 MS.gene00313:CDS
TTGGGAGCGGTCAGAATACG+CGG 0.673382 2.1:+56408277 MS.gene00313:CDS
ACCTGGTAAGACATTGATGT+GGG 0.674272 2.1:+56407197 MS.gene00313:CDS
GTGTAAAGTTCCGACAGCAG+CGG 0.675258 2.1:-56409699 None:intergenic
TTCAGCGAATCCTAAACCAG+CGG 0.676523 2.1:+56408356 MS.gene00313:CDS
TTGAAATCATACGCATCATG+GGG 0.681522 2.1:+56407255 MS.gene00313:CDS
CCCGTCATATGGGAAAACAA+AGG 0.682970 2.1:+56409614 MS.gene00313:CDS
GTGATAAGTTCCATCACCAG+TGG 0.684233 2.1:-56408718 None:intergenic
TGAAACTATTCTCGACCTGG+AGG 0.688326 2.1:+56407812 MS.gene00313:CDS
CACCTGGTAAGACATTGATG+TGG 0.697380 2.1:+56407196 MS.gene00313:CDS
ACACTGTTGTGACACCTGCG+AGG 0.699379 2.1:+56409718 MS.gene00313:CDS
AGAGACACATGCATAGTGTG+CGG 0.699537 2.1:-56409960 None:intergenic
CTGCTAGTAGGAAATTGTAG+CGG 0.709881 2.1:-56411058 None:intergenic
ATTATCCCAAAGGACAAGGG+AGG 0.714855 2.1:+56408318 MS.gene00313:CDS
TCTCCAATACATCATCAGCA+GGG 0.719122 2.1:-56407551 None:intergenic
TTCATGTCTAATGAAACTTG+TGG 0.724315 2.1:-56407613 None:intergenic
AAAACTGGTGGTGTGTACTG+TGG 0.738141 2.1:-56409552 None:intergenic
GTAGCGGTTTGACTACAGGG+AGG 0.751594 2.1:-56411042 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTAAATTTAAAAATA+TGG - chr2.1:56409149-56409168 None:intergenic 0.0%
!! AAAAAATTGTTTAAAAATGA+AGG - chr2.1:56410446-56410465 None:intergenic 10.0%
!! AAAGTAAAAAAAAATGCTTT+GGG + chr2.1:56410338-56410357 MS.gene00313:intron 15.0%
!! AATAAAAAAAAGGATGTAAA+TGG - chr2.1:56407989-56408008 None:intergenic 15.0%
!! TAAAGTAAAAAAAAATGCTT+TGG + chr2.1:56410337-56410356 MS.gene00313:intron 15.0%
!!! TTTTTTTTTGTTACCATTTT+TGG + chr2.1:56409095-56409114 MS.gene00313:intron 15.0%
!! AAAAAAAGTTAACATTGCAT+TGG + chr2.1:56410407-56410426 MS.gene00313:intron 20.0%
!! AAAAGAATAGAATGAGAAAA+TGG - chr2.1:56408496-56408515 None:intergenic 20.0%
!! AAACAAACCAATAGTTAAAA+AGG - chr2.1:56410312-56410331 None:intergenic 20.0%
!! ATATAAGAATCCAATTTGAA+AGG - chr2.1:56408107-56408126 None:intergenic 20.0%
!! TACTTTATACTATACAGTAT+TGG + chr2.1:56407380-56407399 MS.gene00313:CDS 20.0%
!!! AACTAATCCTTTTTAACTAT+TGG + chr2.1:56410302-56410321 MS.gene00313:intron 20.0%
!!! AATAGTTAAAAAGGATTAGT+TGG - chr2.1:56410303-56410322 None:intergenic 20.0%
!!! TTACATCCTTTTTTTTATTG+TGG + chr2.1:56407990-56408009 MS.gene00313:intron 20.0%
!!! TTCTCTTTTTTTTTTTTTGC+AGG + chr2.1:56409488-56409507 MS.gene00313:intron 20.0%
! AAAAAAAGAGAAAACAGCAA+TGG - chr2.1:56409480-56409499 None:intergenic 25.0%
! AAAAGGATGTAAATGGAATT+TGG - chr2.1:56407982-56408001 None:intergenic 25.0%
! AAGTAAGTGTATCAAATCTT+CGG - chr2.1:56407365-56407384 None:intergenic 25.0%
! ACCAACAAGAAATAGAATAT+GGG - chr2.1:56410048-56410067 None:intergenic 25.0%
! AGAATAGTTTCATTGAATGA+TGG - chr2.1:56407804-56407823 None:intergenic 25.0%
! AGACTATATTTCCTGATAAT+TGG + chr2.1:56407325-56407344 MS.gene00313:CDS 25.0%
! AGATTCTCAATCAAGAAAAA+TGG - chr2.1:56410643-56410662 None:intergenic 25.0%
! TAATCATGTTCAACAACTAT+TGG + chr2.1:56408047-56408066 MS.gene00313:intron 25.0%
! TAGTATTTCATGTAGTGTTT+CGG - chr2.1:56407436-56407455 None:intergenic 25.0%
! TTCAAAATGAATGTTGTTGA+AGG + chr2.1:56410217-56410236 MS.gene00313:intron 25.0%
!! ATTCAAGTTTCCTTTCAAAT+TGG + chr2.1:56408094-56408113 MS.gene00313:intron 25.0%
!! GATTTGGTCAATATGAAAAT+CGG - chr2.1:56409364-56409383 None:intergenic 25.0%
!! TTCATTCAAAGAACAACTTT+TGG + chr2.1:56407671-56407690 MS.gene00313:CDS 25.0%
!!! AAATGACACTCATTTTGAAA+TGG + chr2.1:56410481-56410500 MS.gene00313:intron 25.0%
!!! AACCGAAATTGATTTTTCTT+GGG + chr2.1:56410794-56410813 MS.gene00313:intron 25.0%
!!! AACTTATGGGACATTTTTTT+TGG + chr2.1:56408155-56408174 MS.gene00313:intron 25.0%
!!! ATGTACATAGGAGTATTAAT+TGG + chr2.1:56410365-56410384 MS.gene00313:intron 25.0%
!!! CAACAACATTCATTTTGAAA+CGG - chr2.1:56410216-56410235 None:intergenic 25.0%
!!! TTTTTTTTTTGTTGCACTTC+CGG + chr2.1:56409204-56409223 MS.gene00313:intron 25.0%
AACAAATACACTGCGAAAAA+CGG - chr2.1:56408599-56408618 None:intergenic 30.0%
AACGAAACAAATAGTTGGTT+TGG - chr2.1:56410582-56410601 None:intergenic 30.0%
AAGATTTCCTGTTATGCATT+GGG + chr2.1:56408952-56408971 MS.gene00313:CDS 30.0%
AAGCCTTCATTAATTTCTAC+AGG - chr2.1:56410838-56410857 None:intergenic 30.0%
AATCAACAACTTCAGCTAAT+TGG - chr2.1:56408768-56408787 None:intergenic 30.0%
AATCTTCGGATCTTTCTATT+CGG - chr2.1:56407351-56407370 None:intergenic 30.0%
AATGCATAACAGGAAATCTT+GGG - chr2.1:56408952-56408971 None:intergenic 30.0%
AATTCACTATGAAAAACTGG+TGG - chr2.1:56409567-56409586 None:intergenic 30.0%
AGAAAAATCAATTTCGGTTG+TGG - chr2.1:56410793-56410812 None:intergenic 30.0%
AGAAAATCACACAAGTCAAA+GGG - chr2.1:56408878-56408897 None:intergenic 30.0%
AGCCTTCATTAATTTCTACA+GGG - chr2.1:56410837-56410856 None:intergenic 30.0%
AGTATTTCATGTAGTGTTTC+GGG - chr2.1:56407435-56407454 None:intergenic 30.0%
ATGAAAATCGGAGAAGATAT+GGG - chr2.1:56409352-56409371 None:intergenic 30.0%
CAAACAGTATTATTACCTCA+CGG - chr2.1:56407866-56407885 None:intergenic 30.0%
CAATTGAAAGTAACTTAGCT+AGG - chr2.1:56409796-56409815 None:intergenic 30.0%
CTTGGGAAAGTTAATATTTC+AGG - chr2.1:56409908-56409927 None:intergenic 30.0%
GAAAAATCAATTTCGGTTGT+GGG - chr2.1:56410792-56410811 None:intergenic 30.0%
GAACGAAATCAAAAAGAAAC+AGG - chr2.1:56408185-56408204 None:intergenic 30.0%
GACCAACAAGAAATAGAATA+TGG - chr2.1:56410049-56410068 None:intergenic 30.0%
GCAAATTCACTATGAAAAAC+TGG - chr2.1:56409570-56409589 None:intergenic 30.0%
GGGAAAAATATAATAGTCCA+TGG - chr2.1:56410028-56410047 None:intergenic 30.0%
GTCAAATGTTGACATTTACA+AGG + chr2.1:56410144-56410163 MS.gene00313:intron 30.0%
GTCTTGCCACAATAAAAAAA+AGG - chr2.1:56407999-56408018 None:intergenic 30.0%
GTTGTTGAACATGATTAAGA+TGG - chr2.1:56408044-56408063 None:intergenic 30.0%
GTTTCCTAGATCATTATGTT+GGG + chr2.1:56409228-56409247 MS.gene00313:intron 30.0%
TACCCTGTAGAAATTAATGA+AGG + chr2.1:56410832-56410851 MS.gene00313:intron 30.0%
TAGAAAATCACACAAGTCAA+AGG - chr2.1:56408879-56408898 None:intergenic 30.0%
TATGAAAATCGGAGAAGATA+TGG - chr2.1:56409353-56409372 None:intergenic 30.0%
TCGGTTAATGAATCAGATTT+GGG - chr2.1:56411009-56411028 None:intergenic 30.0%
TGACAAAGAGTTATACAATG+AGG - chr2.1:56407721-56407740 None:intergenic 30.0%
TGTTTCCTAGATCATTATGT+TGG + chr2.1:56409227-56409246 MS.gene00313:intron 30.0%
TTATTACCTCACGGAAAAAT+AGG - chr2.1:56407857-56407876 None:intergenic 30.0%
TTCATGTCTAATGAAACTTG+TGG - chr2.1:56407616-56407635 None:intergenic 30.0%
TTCCTACTATGTTTCATGTT+TGG + chr2.1:56409070-56409089 MS.gene00313:intron 30.0%
TTCGGTTAATGAATCAGATT+TGG - chr2.1:56411010-56411029 None:intergenic 30.0%
TTCTCAATCAAGAAAAATGG+TGG - chr2.1:56410640-56410659 None:intergenic 30.0%
! AGTTATTTGGAGTACTTGAT+CGG - chr2.1:56407502-56407521 None:intergenic 30.0%
! CTTGTGCTGTAATATTTTCA+CGG + chr2.1:56409122-56409141 MS.gene00313:intron 30.0%
! TCCCATATTCTATTTCTTGT+TGG + chr2.1:56410044-56410063 MS.gene00313:intron 30.0%
! TTGTGTGATTTTCTATTCAC+AGG + chr2.1:56408884-56408903 MS.gene00313:intron 30.0%
!! ACATAGGAGTATTAATTGGA+GGG + chr2.1:56410369-56410388 MS.gene00313:intron 30.0%
!! AGTTAAAAAGGATTAGTTGG+TGG - chr2.1:56410300-56410319 None:intergenic 30.0%
!! CAACCGAAATTGATTTTTCT+TGG + chr2.1:56410793-56410812 MS.gene00313:intron 30.0%
!! GTTAAAAAGGATTAGTTGGT+GGG - chr2.1:56410299-56410318 None:intergenic 30.0%
!! TACATAGGAGTATTAATTGG+AGG + chr2.1:56410368-56410387 MS.gene00313:intron 30.0%
!! TGTTTCCTTCTGAAACTTAT+GGG + chr2.1:56408142-56408161 MS.gene00313:intron 30.0%
!! TTCATAGTGAATTTGCTGAT+TGG + chr2.1:56409574-56409593 MS.gene00313:CDS 30.0%
!! TTGTTTCCTTCTGAAACTTA+TGG + chr2.1:56408141-56408160 MS.gene00313:intron 30.0%
!!! AACATTCATTTTGAAACGGA+GGG - chr2.1:56410212-56410231 None:intergenic 30.0%
!!! AGTCTTATCCGTGTTTTAAT+CGG + chr2.1:56410862-56410881 MS.gene00313:intron 30.0%
AAAACTGAACCTGAGTTTCT+GGG + chr2.1:56408531-56408550 MS.gene00313:CDS 35.0%
AAAGGCTACAATTATCCCAA+AGG + chr2.1:56408308-56408327 MS.gene00313:CDS 35.0%
AAATGGAGCATACAAGTCAA+TGG - chr2.1:56409855-56409874 None:intergenic 35.0%
AATGTATACCATCTCTTCCA+GGG + chr2.1:56409309-56409328 MS.gene00313:CDS 35.0%
AATGTCCCATAAGTTTCAGA+AGG - chr2.1:56408150-56408169 None:intergenic 35.0%
AATTCAAATCAAGTTCCCAC+AGG - chr2.1:56410728-56410747 None:intergenic 35.0%
AATTGAAAGCAAACTTAGCC+AGG - chr2.1:56408819-56408838 None:intergenic 35.0%
ACAAATACACTGCGAAAAAC+GGG - chr2.1:56408598-56408617 None:intergenic 35.0%
ACAATTATCCCAAAGGACAA+GGG + chr2.1:56408315-56408334 MS.gene00313:CDS 35.0%
ACAGGGTAAAGAAAATGTAG+TGG - chr2.1:56410820-56410839 None:intergenic 35.0%
ACCAAGTAAATGATACACTC+AGG + chr2.1:56410960-56410979 MS.gene00313:intron 35.0%
ACCTGAGTGTATCATTTACT+TGG - chr2.1:56410964-56410983 None:intergenic 35.0%
AGCCAAACATGAAACATAGT+AGG - chr2.1:56409075-56409094 None:intergenic 35.0%
AGTACCTCAGATGATGAAAA+TGG - chr2.1:56409013-56409032 None:intergenic 35.0%
AGTTTCTATCCTATTCCCTT+TGG - chr2.1:56410901-56410920 None:intergenic 35.0%
ATAACAGGAAATCTTGGGAA+AGG - chr2.1:56408947-56408966 None:intergenic 35.0%
CAACAACTATTGGATGTGTT+TGG + chr2.1:56408057-56408076 MS.gene00313:intron 35.0%
CAAGATTTCCTGTTATGCAT+TGG + chr2.1:56408951-56408970 MS.gene00313:CDS 35.0%
CAATATGACGATTGAAGAAG+AGG - chr2.1:56408387-56408406 None:intergenic 35.0%
CAATGCATAACAGGAAATCT+TGG - chr2.1:56408953-56408972 None:intergenic 35.0%
CATAATGATCTAGGAAACAC+CGG - chr2.1:56409226-56409245 None:intergenic 35.0%
CGATCAACGAAACAAATAGT+TGG - chr2.1:56410587-56410606 None:intergenic 35.0%
CTACATTTCGTTGTGAAGTT+GGG - chr2.1:56407227-56407246 None:intergenic 35.0%
CTATAATCCCTGGAAAAGTT+AGG - chr2.1:56409515-56409534 None:intergenic 35.0%
CTTGAAATCATACGCATCAT+GGG + chr2.1:56407254-56407273 MS.gene00313:CDS 35.0%
GAATTCATTAACAAAGCCGA+TGG + chr2.1:56409756-56409775 MS.gene00313:CDS 35.0%
GGAACTGTAACATTTCTGTT+GGG + chr2.1:56410686-56410705 MS.gene00313:intron 35.0%
GGAAGCAACACAAAATGATT+TGG - chr2.1:56409380-56409399 None:intergenic 35.0%
GGAATGCTTAAAGTGACTTA+GGG - chr2.1:56408219-56408238 None:intergenic 35.0%
GGCCCAAGAAAAATCAATTT+CGG - chr2.1:56410799-56410818 None:intergenic 35.0%
GGGAAAGTTAATATTTCAGG+AGG - chr2.1:56409905-56409924 None:intergenic 35.0%
GTTTCATTGAATGATGGCAT+TGG - chr2.1:56407798-56407817 None:intergenic 35.0%
GTTTCTCAGATCAGTATGTT+GGG + chr2.1:56408259-56408278 MS.gene00313:intron 35.0%
TACAATTATCCCAAAGGACA+AGG + chr2.1:56408314-56408333 MS.gene00313:CDS 35.0%
TATTAATTGGAGGGTTCAGT+TGG + chr2.1:56410378-56410397 MS.gene00313:intron 35.0%
TCAGAAGGAAACAAGCAAAA+TGG - chr2.1:56408135-56408154 None:intergenic 35.0%
TCTAATGAAACTTGTGGTGA+TGG - chr2.1:56407610-56407629 None:intergenic 35.0%
TCTACATTTCGTTGTGAAGT+TGG - chr2.1:56407228-56407247 None:intergenic 35.0%
TCTGTGGCTTATCATCATTA+TGG - chr2.1:56408645-56408664 None:intergenic 35.0%
TCTTGAAATCATACGCATCA+TGG + chr2.1:56407253-56407272 MS.gene00313:CDS 35.0%
TGAAAATCGGAGAAGATATG+GGG - chr2.1:56409351-56409370 None:intergenic 35.0%
TGGAACTGTAACATTTCTGT+TGG + chr2.1:56410685-56410704 MS.gene00313:intron 35.0%
TGGAATGCTTAAAGTGACTT+AGG - chr2.1:56408220-56408239 None:intergenic 35.0%
TGTTGGTCAAAACATTCAAC+TGG + chr2.1:56410061-56410080 MS.gene00313:intron 35.0%
TGTTTCTCAGATCAGTATGT+TGG + chr2.1:56408258-56408277 MS.gene00313:intron 35.0%
TTGAAATCATACGCATCATG+GGG + chr2.1:56407255-56407274 MS.gene00313:CDS 35.0%
TTGCAATTCCTGTTCTACAA+GGG - chr2.1:56407900-56407919 None:intergenic 35.0%
TTTCTATTCGGCCAATTATC+AGG - chr2.1:56407339-56407358 None:intergenic 35.0%
! ACATTCAACTGGCATTTTCT+TGG + chr2.1:56410072-56410091 MS.gene00313:intron 35.0%
! CACAAGAAGTGCAAACAATA+TGG - chr2.1:56408240-56408259 None:intergenic 35.0%
! CATTCAACTGGCATTTTCTT+GGG + chr2.1:56410073-56410092 MS.gene00313:intron 35.0%
! TGTATTTGTTGATTGCCCAT+TGG + chr2.1:56408609-56408628 MS.gene00313:CDS 35.0%
! TTTTCTTCCACAGACATAAC+AGG - chr2.1:56409935-56409954 None:intergenic 35.0%
!! AGCTGAAGTTGTTGATTCAA+AGG + chr2.1:56408771-56408790 MS.gene00313:CDS 35.0%
!! GAAGTTGTTGATTCAAAGGA+TGG + chr2.1:56408775-56408794 MS.gene00313:CDS 35.0%
!! GAGGTACTAAGTTTCTAGTA+TGG + chr2.1:56409998-56410017 MS.gene00313:intron 35.0%
!!! CAACATTCATTTTGAAACGG+AGG - chr2.1:56410213-56410232 None:intergenic 35.0%
!!! CTTGGGAAAGGTACTATTTT+TGG - chr2.1:56408935-56408954 None:intergenic 35.0%
!!! TGACACTCATTTTGAAATGG+AGG + chr2.1:56410484-56410503 MS.gene00313:intron 35.0%
AATTGTAGCGGTTTGACTAC+AGG - chr2.1:56411049-56411068 None:intergenic 40.0%
ACACAAGACATTGAGCTAGA+TGG - chr2.1:56408910-56408929 None:intergenic 40.0%
ACATATTCGCTCCATCTGTA+TGG + chr2.1:56408695-56408714 MS.gene00313:CDS 40.0%
ACCTGGTAAGACATTGATGT+GGG + chr2.1:56407197-56407216 MS.gene00313:CDS 40.0%
AGCAGTCAGAATAAATGGCA+TGG + chr2.1:56409251-56409270 MS.gene00313:CDS 40.0%
AGGTTCATCAAGTGGGAATA+GGG - chr2.1:56410766-56410785 None:intergenic 40.0%
AGTACCTCAGATGATCCTAT+TGG - chr2.1:56409986-56410005 None:intergenic 40.0%
ATAATTCCAACACGCTTCTG+TGG - chr2.1:56408661-56408680 None:intergenic 40.0%
ATTGTAGCGGTTTGACTACA+GGG - chr2.1:56411048-56411067 None:intergenic 40.0%
CAAAACTGAACCTGAGTTTC+TGG + chr2.1:56408530-56408549 MS.gene00313:CDS 40.0%
CAATGAAACTATTCTCGACC+TGG + chr2.1:56407809-56407828 MS.gene00313:CDS 40.0%
CACATGCAAGCAAACATCTA+TGG - chr2.1:56407473-56407492 None:intergenic 40.0%
CACTGTTATATGATGCTAGC+TGG + chr2.1:56410665-56410684 MS.gene00313:intron 40.0%
CAGCACAAGAAAGCCAAAAA+TGG - chr2.1:56409111-56409130 None:intergenic 40.0%
CCGTCATATGGGAAAACAAA+GGG + chr2.1:56409615-56409634 MS.gene00313:CDS 40.0%
CTGCACTATATTATGTGCTC+TGG - chr2.1:56407307-56407326 None:intergenic 40.0%
CTTGCAATTCCTGTTCTACA+AGG - chr2.1:56407901-56407920 None:intergenic 40.0%
GAATGTATACCATCTCTTCC+AGG + chr2.1:56409308-56409327 MS.gene00313:CDS 40.0%
GACTTGTATGCTCCATTTAC+AGG + chr2.1:56409857-56409876 MS.gene00313:intron 40.0%
GCATTCGACCGATTAAAACA+CGG - chr2.1:56410873-56410892 None:intergenic 40.0%
GGAATAGGATAGAAACTAGC+TGG + chr2.1:56410904-56410923 MS.gene00313:intron 40.0%
GGCAGATAAACTAGTACCAT+CGG - chr2.1:56409775-56409794 None:intergenic 40.0%
GTTAATATTTCAGGAGGCTC+AGG - chr2.1:56409899-56409918 None:intergenic 40.0%
TATGCATGTGTCTCTCCAAT+AGG + chr2.1:56409968-56409987 MS.gene00313:CDS 40.0%
TCTCCAATACATCATCAGCA+GGG - chr2.1:56407554-56407573 None:intergenic 40.0%
TGCAATTCCTGTTCTACAAG+GGG - chr2.1:56407899-56407918 None:intergenic 40.0%
TGCTCCCAACATAATGATCT+AGG - chr2.1:56409235-56409254 None:intergenic 40.0%
TGGTACTAGAGAAGAAGTGA+AGG + chr2.1:56410924-56410943 MS.gene00313:intron 40.0%
TTATAGCTGGCTATAATCCC+TGG - chr2.1:56409525-56409544 None:intergenic 40.0%
TTGGGAGCAGTCAGAATAAA+TGG + chr2.1:56409246-56409265 MS.gene00313:CDS 40.0%
! ACGGTTGATTTCCTCTGAAA+GGG - chr2.1:56407757-56407776 None:intergenic 40.0%
! ATTTGTTGATTGCCCATTGG+CGG + chr2.1:56408612-56408631 MS.gene00313:CDS 40.0%
! CGTTTTTCCCAATGCATAAC+AGG - chr2.1:56408962-56408981 None:intergenic 40.0%
! CTCTCCATTTTCATCATCTG+AGG + chr2.1:56409006-56409025 MS.gene00313:CDS 40.0%
! GAGGTACTAAGTTTCATGTC+TGG + chr2.1:56409025-56409044 MS.gene00313:intron 40.0%
! TACTTACCTCTTTGTTTGCC+TGG + chr2.1:56408798-56408817 MS.gene00313:intron 40.0%
! TTGATTTCCTCTGAAAGGGA+CGG - chr2.1:56407753-56407772 None:intergenic 40.0%
!! AGAACAACTTTTGGAGAGCA+TGG + chr2.1:56407680-56407699 MS.gene00313:CDS 40.0%
!! CATACAAGTCAATGGATTGC+AGG - chr2.1:56409847-56409866 None:intergenic 40.0%
!! GATTGACCTATTTTTCCGTG+AGG + chr2.1:56407848-56407867 MS.gene00313:CDS 40.0%
!! GCTTTGGGAGTAATGTACAT+AGG + chr2.1:56410353-56410372 MS.gene00313:intron 40.0%
!! GTTTCTAGTATGGCTTTCCA+TGG + chr2.1:56410008-56410027 MS.gene00313:intron 40.0%
!! TGAATTTGCTGATTGGCCAT+TGG + chr2.1:56409581-56409600 MS.gene00313:CDS 40.0%
!!! AGACGCGTAAGTTTTTTGTG+GGG - chr2.1:56408988-56409007 None:intergenic 40.0%
!!! AGAGACGCGTAAGTTTTTTG+TGG - chr2.1:56408990-56409009 None:intergenic 40.0%
!!! CCCTTTGTTTTCCCATATGA+CGG - chr2.1:56409618-56409637 None:intergenic 40.0%
!!! CCTTTGTTTTCCCATATGAC+GGG - chr2.1:56409617-56409636 None:intergenic 40.0%
!!! GAGACGCGTAAGTTTTTTGT+GGG - chr2.1:56408989-56409008 None:intergenic 40.0%
AAGCCTTCCTGTTATGTCTG+TGG + chr2.1:56409925-56409944 MS.gene00313:CDS 45.0%
AAGTCAAAGGGTTGCAGAAC+TGG - chr2.1:56408866-56408885 None:intergenic 45.0%
ACAGACATAACAGGAAGGCT+TGG - chr2.1:56409926-56409945 None:intergenic 45.0%
ACTGGCATAGCAATGGAAGT+CGG - chr2.1:56408848-56408867 None:intergenic 45.0%
ACTTAGCCAGGCAAACAAAG+AGG - chr2.1:56408807-56408826 None:intergenic 45.0%
AGACATGAAGACTCTTTCCC+AGG + chr2.1:56407627-56407646 MS.gene00313:CDS 45.0%
AGAGACACATGCATAGTGTG+CGG - chr2.1:56409963-56409982 None:intergenic 45.0%
AGATATGGGGTCGTAGAGTT+AGG - chr2.1:56409338-56409357 None:intergenic 45.0%
ATGCAGAGTCCAAAGGGAAT+AGG + chr2.1:56410889-56410908 MS.gene00313:intron 45.0%
ATTATCCCAAAGGACAAGGG+AGG + chr2.1:56408318-56408337 MS.gene00313:CDS 45.0%
CAAGAACCTTTGCAACTGCA+CGG - chr2.1:56409401-56409420 None:intergenic 45.0%
CACCTGGTAAGACATTGATG+TGG + chr2.1:56407196-56407215 MS.gene00313:CDS 45.0%
CAGACATAACAGGAAGGCTT+GGG - chr2.1:56409925-56409944 None:intergenic 45.0%
CCCGTCATATGGGAAAACAA+AGG + chr2.1:56409614-56409633 MS.gene00313:CDS 45.0%
CTACAACTATCTCAGCAGAC+AGG + chr2.1:56409282-56409301 MS.gene00313:CDS 45.0%
CTCTCCAATACATCATCAGC+AGG - chr2.1:56407555-56407574 None:intergenic 45.0%
CTCTCCAATAGGATCATCTG+AGG + chr2.1:56409979-56409998 MS.gene00313:CDS 45.0%
CTGTGGTTGCAGTTTATAGC+TGG - chr2.1:56409538-56409557 None:intergenic 45.0%
CTTCCACAGACATAACAGGA+AGG - chr2.1:56409931-56409950 None:intergenic 45.0%
CTTGCATAGCAATGGAAGTC+AGG - chr2.1:56409823-56409842 None:intergenic 45.0%
GAGGTTCATCAAGTGGGAAT+AGG - chr2.1:56410767-56410786 None:intergenic 45.0%
GCAATTCCTGTTCTACAAGG+GGG - chr2.1:56407898-56407917 None:intergenic 45.0%
GTACAATCTCCCAGAAACTC+AGG - chr2.1:56408543-56408562 None:intergenic 45.0%
GTGATAAGTTCCATCACCAG+TGG - chr2.1:56408721-56408740 None:intergenic 45.0%
GTTGAGCAAACAGTCCAAGA+CGG - chr2.1:56407776-56407795 None:intergenic 45.0%
TAATTGGAGGGTTCAGTTGG+AGG + chr2.1:56410381-56410400 MS.gene00313:intron 45.0%
TCAGAGGAAATCAACCGTCT+TGG + chr2.1:56407759-56407778 MS.gene00313:CDS 45.0%
TCAGATCAGTATGTTGGGAG+CGG + chr2.1:56408264-56408283 MS.gene00313:intron 45.0%
TCCCACATCAATGTCTTACC+AGG - chr2.1:56407201-56407220 None:intergenic 45.0%
TGAAACTATTCTCGACCTGG+AGG + chr2.1:56407812-56407831 MS.gene00313:CDS 45.0%
TGAGCTAGATGGCCTGTAAA+TGG - chr2.1:56409872-56409891 None:intergenic 45.0%
TTAGGATTCCCTGGAAGAGA+TGG - chr2.1:56409320-56409339 None:intergenic 45.0%
TTCAGCGAATCCTAAACCAG+CGG + chr2.1:56408356-56408375 MS.gene00313:CDS 45.0%
TTGCAGAACTGGCATAGCAA+TGG - chr2.1:56408855-56408874 None:intergenic 45.0%
TTGCAGGACTTGCATAGCAA+TGG - chr2.1:56409831-56409850 None:intergenic 45.0%
TTGCTTCTATGTAGTCGCAC+AGG + chr2.1:56408423-56408442 MS.gene00313:CDS 45.0%
! AAAACTGGTGGTGTGTACTG+TGG - chr2.1:56409555-56409574 None:intergenic 45.0%
! ACTGATTCTGCAACTCCTGT+GGG + chr2.1:56410710-56410729 MS.gene00313:intron 45.0%
! AGAAGTCGACTGAAGTATCC+TGG - chr2.1:56407648-56407667 None:intergenic 45.0%
! GAAGTCGACTGAAGTATCCT+GGG - chr2.1:56407647-56407666 None:intergenic 45.0%
! GACGGTTGATTTCCTCTGAA+AGG - chr2.1:56407758-56407777 None:intergenic 45.0%
! GAGAGCATGGCATGGAAAAA+GGG + chr2.1:56407693-56407712 MS.gene00313:CDS 45.0%
! GTTCCCTGCTGATGATGTAT+TGG + chr2.1:56407548-56407567 MS.gene00313:CDS 45.0%
! TGCAGGACCTAACTTTTCCA+GGG + chr2.1:56409505-56409524 MS.gene00313:intron 45.0%
! TTGCAGGACCTAACTTTTCC+AGG + chr2.1:56409504-56409523 MS.gene00313:intron 45.0%
! TTTGTTGATTGCCCATTGGC+GGG + chr2.1:56408613-56408632 MS.gene00313:CDS 45.0%
!! AACTTTTGGAGAGCATGGCA+TGG + chr2.1:56407685-56407704 MS.gene00313:CDS 45.0%
!! GCTATTTTGTAACTCCTCGC+AGG - chr2.1:56409735-56409754 None:intergenic 45.0%
!!! TTTTCCCATATGACGGGTCT+AGG - chr2.1:56409611-56409630 None:intergenic 45.0%
ACAAACAGCAACCAGAGTGC+AGG + chr2.1:56408569-56408588 MS.gene00313:CDS 50.0%
ATACGTCCTCCCTTGTCCTT+TGG - chr2.1:56408327-56408346 None:intergenic 50.0%
ATCACCAGTGGCCATACAGA+TGG - chr2.1:56408709-56408728 None:intergenic 50.0%
ATCTGTATGGCCACTGGTGA+TGG + chr2.1:56408708-56408727 MS.gene00313:CDS 50.0%
CATCTTTGTCACAGTGCTGC+TGG - chr2.1:56407529-56407548 None:intergenic 50.0%
CATGCCTAGACCCGTCATAT+GGG + chr2.1:56409604-56409623 MS.gene00313:CDS 50.0%
CTATGTAAAGCCGCTGCTGT+CGG + chr2.1:56409689-56409708 MS.gene00313:CDS 50.0%
CTGGCATAGCAATGGAAGTC+GGG - chr2.1:56408847-56408866 None:intergenic 50.0%
GACAGCAGCGGCTTTACATA+GGG - chr2.1:56409690-56409709 None:intergenic 50.0%
GACTACAGGGAGGGAAATAG+AGG - chr2.1:56411035-56411054 None:intergenic 50.0%
GATTTGGGCTCGAAGAGTTC+AGG - chr2.1:56410994-56411013 None:intergenic 50.0%
GCTCAGGACATTGAGCTAGA+TGG - chr2.1:56409883-56409902 None:intergenic 50.0%
GGTCGAATGCAGAGTCCAAA+GGG + chr2.1:56410883-56410902 MS.gene00313:intron 50.0%
GTCGTAGAGTTAGGATTCCC+TGG - chr2.1:56409329-56409348 None:intergenic 50.0%
GTGTAAAGTTCCGACAGCAG+CGG - chr2.1:56409702-56409721 None:intergenic 50.0%
TACCAACCCCCTTGTAGAAC+AGG + chr2.1:56407889-56407908 MS.gene00313:intron 50.0%
TACGTCCTCCCTTGTCCTTT+GGG - chr2.1:56408326-56408345 None:intergenic 50.0%
TAGCGGTTTGACTACAGGGA+GGG - chr2.1:56411044-56411063 None:intergenic 50.0%
TCATAGTTTCTGCTGCCTCC+AGG - chr2.1:56407830-56407849 None:intergenic 50.0%
TGCTGCTGGTGCGAGTTATT+TGG - chr2.1:56407515-56407534 None:intergenic 50.0%
TGGGCTGAGGTTCATCAAGT+GGG - chr2.1:56410773-56410792 None:intergenic 50.0%
TGTTTCGGGCTCCTTCTTCT+TGG - chr2.1:56407421-56407440 None:intergenic 50.0%
TTCCTGTTCTACAAGGGGGT+TGG - chr2.1:56407894-56407913 None:intergenic 50.0%
TTGCTTCCGTGCAGTTGCAA+AGG + chr2.1:56409392-56409411 MS.gene00313:CDS 50.0%
! GATAAGCCACAGAAGCGTGT+TGG + chr2.1:56408652-56408671 MS.gene00313:CDS 50.0%
! GGAGAGCATGGCATGGAAAA+AGG + chr2.1:56407692-56407711 MS.gene00313:CDS 50.0%
! TCAATTTCGGTTGTGGGCTG+AGG - chr2.1:56410786-56410805 None:intergenic 50.0%
!! CACTGATTCTGCAACTCCTG+TGG + chr2.1:56410709-56410728 MS.gene00313:intron 50.0%
!! GGGAGGGAAATAGAGGCATT+CGG - chr2.1:56411028-56411047 None:intergenic 50.0%
AAAACGGGTGACCTGCACTC+TGG - chr2.1:56408583-56408602 None:intergenic 55.0%
ACACTGTTGTGACACCTGCG+AGG + chr2.1:56409718-56409737 MS.gene00313:CDS 55.0%
ATCATACGCATCATGGGGCG+AGG + chr2.1:56407260-56407279 MS.gene00313:CDS 55.0%
CGACAGCAGCGGCTTTACAT+AGG - chr2.1:56409691-56409710 None:intergenic 55.0%
CGGTCGAATGCAGAGTCCAA+AGG + chr2.1:56410882-56410901 MS.gene00313:intron 55.0%
GAATACGCGGCATGGCTGAA+AGG + chr2.1:56408290-56408309 MS.gene00313:CDS 55.0%
GCATGCCTAGACCCGTCATA+TGG + chr2.1:56409603-56409622 MS.gene00313:CDS 55.0%
GTAGCGGTTTGACTACAGGG+AGG - chr2.1:56411045-56411064 None:intergenic 55.0%
TGCTAGACCGTCCCTTTCAG+AGG + chr2.1:56407743-56407762 MS.gene00313:CDS 55.0%
TGTGTGCCGAGCCAAGAAGA+AGG + chr2.1:56407407-56407426 MS.gene00313:CDS 55.0%
TTGGGAGCGGTCAGAATACG+CGG + chr2.1:56408277-56408296 MS.gene00313:CDS 55.0%
! GTGGGCTGAGGTTCATCAAG+TGG - chr2.1:56410774-56410793 None:intergenic 55.0%
! TGAAGAAGAGGTGTGTCCGC+TGG - chr2.1:56408375-56408394 None:intergenic 55.0%
!! AGAGGTGTGTCCGCTGGTTT+AGG - chr2.1:56408369-56408388 None:intergenic 55.0%
AGCGGTCAGAATACGCGGCA+TGG + chr2.1:56408282-56408301 MS.gene00313:CDS 60.0%
CGCTCCATCTGTATGGCCAC+TGG + chr2.1:56408702-56408721 MS.gene00313:CDS 60.0%
CGGGCTCCTTCTTCTTGGCT+CGG - chr2.1:56407416-56407435 None:intergenic 60.0%
GACGGGTCTAGGCATGCCAA+TGG - chr2.1:56409600-56409619 None:intergenic 60.0%
! TGATTGCCCATTGGCGGGCG+CGG + chr2.1:56408618-56408637 MS.gene00313:CDS 65.0%
TATGGCCCGCGCCCGCCAAT+GGG - chr2.1:56408627-56408646 None:intergenic 70.0%
TTATGGCCCGCGCCCGCCAA+TGG - chr2.1:56408628-56408647 None:intergenic 70.0%
! GATTGCCCATTGGCGGGCGC+GGG + chr2.1:56408619-56408638 MS.gene00313:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 56407192 56411077 56407192 ID=MS.gene00313
chr2.1 mRNA 56407192 56411077 56407192 ID=MS.gene00313.t1;Parent=MS.gene00313
chr2.1 exon 56407192 56407869 56407192 ID=MS.gene00313.t1.exon1;Parent=MS.gene00313.t1
chr2.1 CDS 56407192 56407869 56407192 ID=cds.MS.gene00313.t1;Parent=MS.gene00313.t1
chr2.1 exon 56408268 56408444 56408268 ID=MS.gene00313.t1.exon2;Parent=MS.gene00313.t1
chr2.1 CDS 56408268 56408444 56408268 ID=cds.MS.gene00313.t1;Parent=MS.gene00313.t1
chr2.1 exon 56408526 56408796 56408526 ID=MS.gene00313.t1.exon3;Parent=MS.gene00313.t1
chr2.1 CDS 56408526 56408796 56408526 ID=cds.MS.gene00313.t1;Parent=MS.gene00313.t1
chr2.1 exon 56408906 56409027 56408906 ID=MS.gene00313.t1.exon4;Parent=MS.gene00313.t1
chr2.1 CDS 56408906 56409027 56408906 ID=cds.MS.gene00313.t1;Parent=MS.gene00313.t1
chr2.1 exon 56409237 56409413 56409237 ID=MS.gene00313.t1.exon5;Parent=MS.gene00313.t1
chr2.1 CDS 56409237 56409413 56409237 ID=cds.MS.gene00313.t1;Parent=MS.gene00313.t1
chr2.1 exon 56409510 56409777 56409510 ID=MS.gene00313.t1.exon6;Parent=MS.gene00313.t1
chr2.1 CDS 56409510 56409777 56409510 ID=cds.MS.gene00313.t1;Parent=MS.gene00313.t1
chr2.1 exon 56409879 56410000 56409879 ID=MS.gene00313.t1.exon7;Parent=MS.gene00313.t1
chr2.1 CDS 56409879 56410000 56409879 ID=cds.MS.gene00313.t1;Parent=MS.gene00313.t1
chr2.1 exon 56410982 56411077 56410982 ID=MS.gene00313.t1.exon8;Parent=MS.gene00313.t1
chr2.1 CDS 56410982 56411077 56410982 ID=cds.MS.gene00313.t1;Parent=MS.gene00313.t1
Gene Sequence

>MS.gene00313

ATGGCACCTGGTAAGACATTGATGTGGGAAATCCCAACTTCACAACGAAATGTAGATTACTTCTTGAAATCATACGCATCATGGGGCGAGGATGTTACAGATGTTTTGAGTTCCAGAGCACATAATATAGTGCAGACTATATTTCCTGATAATTGGCCGAATAGAAAGATCCGAAGATTTGATACACTTACTTTATACTATACAGTATTGGAACGTGTGTGCCGAGCCAAGAAGAAGGAGCCCGAAACACTACATGAAATACTAACTTCTGATATCTTCCATAGATGTTTGCTTGCATGTGCTGCTGCCGATCAAGTACTCCAAATAACTCGCACCAGCAGCACTGTGACAAAGATGTTCCCTGCTGATGATGTATTGGAGAGCTCTAGAATTACAGCTTTTGATCTTAGTCATACCATCACCACAAGTTTCATTAGACATGAAGACTCTTTCCCAGGATACTTCAGTCGACTTCTCAATTCATTCAAAGAACAACTTTTGGAGAGCATGGCATGGAAAAAGGGTTCCTCATTGTATAACTCTTTGTCACTTGCTAGACCGTCCCTTTCAGAGGAAATCAACCGTCTTGGACTGTTTGCTCAACCAATGCCATCATTCAATGAAACTATTCTCGACCTGGAGGCAGCAGAAACTATGATTGACCTATTTTTCCGTGAGGTAATAATACTGTTTGTTATACCAACCCCCTTGTAGAACAGGAATTGCAAGCTGTATATGAATGAAATAGCTGTTGATAATACTTCTTTTCATAACTGATATTTACTCTCCAAATTCCATTTACATCCTTTTTTTTATTGTGGCAAGACATCAATCTGTTAGTCTGAAGCTCCATCTTAATCATGTTCAACAACTATTGGATGTGTTTGGATTTTATGTTAAGAATTCAAGTTTCCTTTCAAATTGGATTCTTATATCACTTCCATTTTGCTTGTTTCCTTCTGAAACTTATGGGACATTTTTTTTGGTTCGCCTGTTTCTTTTTGATTTCGTTCTTTTGCTGCTTCCCTAAGTCACTTTAAGCATTCCATATTGTTTGCACTTCTTGTGTTTCTCAGATCAGTATGTTGGGAGCGGTCAGAATACGCGGCATGGCTGAAAGGCTACAATTATCCCAAAGGACAAGGGAGGACGTATACAGTCTTTTTCAGCGAATCCTAAACCAGCGGACACACCTCTTCTTCAATCGTCATATTGATCAAATCATGTTGTGTTGCTTCTATGTAGTCGCACAGGTTTCTCTTTTAACTTTGAAAACATGAGAGTGCATTGTGCTTCATTTACCATTTTCTCATTCTATTCTTTTTTATTTGCAGTTTTCAAAACTGAACCTGAGTTTCTGGGAGATTGTACACAGCTACAAACAGCAACCAGAGTGCAGGTCACCCGTTTTTCGCAGTGTATTTGTTGATTGCCCATTGGCGGGCGCGGGCCATAATGATGATAAGCCACAGAAGCGTGTTGGAATTATTACATTTTACAATGACATATTCGCTCCATCTGTATGGCCACTGGTGATGGAACTTATCACTGATGAAGAAACTGTGAAAAGTGACCAATTAGCTGAAGTTGTTGATTCAAAGGATGGTACTTACCTCTTTGTTTGCCTGGCTAAGTTTGCTTTCAATTGTTTGCCCGACTTCCATTGCTATGCCAGTTCTGCAACCCTTTGACTTGTGTGATTTTCTATTCACAGGCCATCTAGCTCAATGTCTTGTGTCTCCAAAAATAGTACCTTTCCCAAGATTTCCTGTTATGCATTGGGAAAAACGATACCCCACAAAAAACTTACGCGTCTCTCCATTTTCATCATCTGAGGTACTAAGTTTCATGTCTGGCTTTCTTTTGACTATTTCTCTTTTCCTACTATGTTTCATGTTTGGCTTTTTTTTTTGTTACCATTTTTGGCTTTCTTGTGCTGTAATATTTTCACGGTCCATATTTTTAAATTTAATTATTTTTTTGCTTCACTAAGTCATTTTGAGCATTACATTTTTTTTTTTTGTTGCACTTCCGGTGTTTCCTAGATCATTATGTTGGGAGCAGTCAGAATAAATGGCATGGTTGAAAAGCTACAACTATCTCAGCAGACAGGAGAGAATGTATACCATCTCTTCCAGGGAATCCTAACTCTACGACCCCATATCTTCTCCGATTTTCATATTGACCAAATCATTTTGTGTTGCTTCCGTGCAGTTGCAAAGGTTCTTGTAAATCTGAGAGTTGTTTCTCTTTAAGTTTTAGTAATCTGAGAGTGTAATGTGATTCCATTGCTGTTTTCTCTTTTTTTTTTTTTGCAGGACCTAACTTTTCCAGGGATTATAGCCAGCTATAAACTGCAACCACAGTACACACCACCAGTTTTTCATAGTGAATTTGCTGATTGGCCATTGGCATGCCTAGACCCGTCATATGGGAAAACAAAGGGACTGACACATATCACTAACATTGTAAAATATTACAATGATATATTCTTTCCCTATGTAAAGCCGCTGCTGTCGGAACTTTACACTGTTGTGACACCTGCGAGGAGTTACAAAATAGCTGAATTCATTAACAAAGCCGATGGTACTAGTTTATCTGCCTAGCTAAGTTACTTTCAATTGTTTTCCTGACTTCCATTGCTATGCAAGTCCTGCAATCCATTGACTTGTATGCTCCATTTACAGGCCATCTAGCTCAATGTCCTGAGCCTCCTGAAATATTAACTTTCCCAAGCCTTCCTGTTATGTCTGTGGAAGAAAAGTCTGCCGCACACTATGCATGTGTCTCTCCAATAGGATCATCTGAGGTACTAAGTTTCTAGTATGGCTTTCCATGGACTATTATATTTTTCCCATATTCTATTTCTTGTTGGTCAAAACATTCAACTGGCATTTTCTTGGGAAAAGAAGCACATGACGCTGTGACTCGTGCAGTTATAGATAAGTTTATGTCAAATGTTGACATTTACAAGGTCAATGTTTTCAATTTTGTACAAAGACTTTAAATTTTGTTCTCCCTCCGTTTCAAAATGAATGTTGTTGAAGGTTTTTACACATATATGAAGAAATGCAATGATTAGAAGAATGAGAATTGTTATTTTACCCACCAACTAATCCTTTTTAACTATTGGTTTGTTTTCTGCTAAAGTAAAAAAAAATGCTTTGGGAGTAATGTACATAGGAGTATTAATTGGAGGGTTCAGTTGGAGGAAAAAAAAAAGTTAACATTGCATTGGAAGCTGAAAATGACCTTCATTTTTAAACAATTTTTTATTTATTTTTTGCTAAAATGACACTCATTTTGAAATGGAGGCAGCGATTTTTAAACTTTTGATTTCTAGTAGAGACAAATTTGTATCTGCAATAAAATTGTTGACTTAGAGAACCAAACCAACTATTTGTTTCGTTGATCGAGAAATTTCTGCAATGCGTCATTGATGTAACCACCATTTTTCTTGATTGAGAATCTCTCACTGTTATATGATGCTAGCTGGAACTGTAACATTTCTGTTGGGCACTGATTCTGCAACTCCTGTGGGAACTTGATTTGAATTGTGTGATAATTTAAGCCCTATTCCCACTTGATGAACCTCAGCCCACAACCGAAATTGATTTTTCTTGGGCCACTACATTTTCTTTACCCTGTAGAAATTAATGAAGGCTTTGCAAGTCTTATCCGTGTTTTAATCGGTCGAATGCAGAGTCCAAAGGGAATAGGATAGAAACTAGCTGGTACTAGAGAAGAAGTGAAGGAATTCACTATTGAACCAAGTAAATGATACACTCAGGTTGTTCGACCTGAACTCTTCGAGCCCAAATCTGATTCATTAACCGAATGCCTCTATTTCCCTCCCTGTAGTCAAACCGCTACAATTTCCTACTAG
Protein sequence

>MS.gene00313.t1

MAPGKTLMWEIPTSQRNVDYFLKSYASWGEDVTDVLSSRAHNIVQTIFPDNWPNRKIRRFDTLTLYYTVLERVCRAKKKEPETLHEILTSDIFHRCLLACAAADQVLQITRTSSTVTKMFPADDVLESSRITAFDLSHTITTSFIRHEDSFPGYFSRLLNSFKEQLLESMAWKKGSSLYNSLSLARPSLSEEINRLGLFAQPMPSFNETILDLEAAETMIDLFFREISMLGAVRIRGMAERLQLSQRTREDVYSLFQRILNQRTHLFFNRHIDQIMLCCFYVVAQFSKLNLSFWEIVHSYKQQPECRSPVFRSVFVDCPLAGAGHNDDKPQKRVGIITFYNDIFAPSVWPLVMELITDEETVKSDQLAEVVDSKDGHLAQCLVSPKIVPFPRFPVMHWEKRYPTKNLRVSPFSSSEIIMLGAVRINGMVEKLQLSQQTGENVYHLFQGILTLRPHIFSDFHIDQIILCCFRAVAKDLTFPGIIASYKLQPQYTPPVFHSEFADWPLACLDPSYGKTKGLTHITNIVKYYNDIFFPYVKPLLSELYTVVTPARSYKIAEFINKADGHLAQCPEPPEILTFPSLPVMSVEEKSAAHYACVSPIGSSEVVRPELFEPKSDSLTECLYFPPCSQTATISY