AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003171

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003171.t1 MTR_0558s0020 88.745 231 26 0 1 231 66 296 6.88e-157 446
MS.gene003171.t1 MTR_6g090505 83.544 237 39 0 1 237 1 237 1.05e-146 423
MS.gene003171.t1 MTR_6g090505 67.647 102 6 2 332 431 230 306 5.06e-35 134
MS.gene003171.t1 MTR_1g083640 90.196 204 20 0 1 204 81 284 6.25e-140 403
MS.gene003171.t1 MTR_8g446020 79.825 228 46 0 4 231 29 256 7.94e-135 389
MS.gene003171.t1 MTR_2g014100 87.209 172 22 0 1 172 74 245 1.54e-109 324
MS.gene003171.t1 MTR_0337s0040 78.125 192 42 0 4 195 30 221 2.24e-109 323
MS.gene003171.t1 MTR_1g055240 88.028 142 17 0 27 168 3 144 8.05e-90 270
MS.gene003171.t1 MTR_0019s0290 82.353 153 24 1 20 169 8 160 6.16e-89 268
MS.gene003171.t1 MTR_3g008240 86.232 138 19 0 1 138 66 203 1.60e-83 256
MS.gene003171.t1 MTR_4g040430 85.507 138 16 1 1 138 65 198 6.00e-82 251
MS.gene003171.t1 MTR_5g071590 81.731 104 19 0 1 104 78 181 8.41e-60 194
MS.gene003171.t1 MTR_6g051425 33.333 273 154 5 21 277 64 324 2.97e-37 139
MS.gene003171.t1 MTR_0337s0060 93.939 66 4 0 383 448 21 86 9.04e-36 132
MS.gene003171.t1 MTR_1281s0010 84.127 63 10 0 1 63 47 109 7.63e-31 115
MS.gene003171.t1 MTR_1g070355 26.102 295 200 5 8 298 104 384 6.93e-17 83.6
MS.gene003171.t1 MTR_0337s0050 75.000 36 9 0 195 230 14 49 7.24e-14 67.0
MS.gene003171.t1 MTR_0402s0040 26.000 150 96 3 20 169 71 205 4.78e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003171.t1 AT4G38180 29.314 423 270 6 20 435 118 518 4.24e-60 210
MS.gene003171.t1 AT4G15090 26.031 388 278 5 59 443 121 502 2.96e-41 157
MS.gene003171.t1 AT4G15090 26.031 388 278 5 59 443 121 502 2.96e-41 157
MS.gene003171.t1 AT4G15090 26.031 388 278 5 59 443 121 502 2.96e-41 157
MS.gene003171.t1 AT4G15090 26.031 388 278 5 59 443 121 502 2.96e-41 157
MS.gene003171.t1 AT4G15090 26.031 388 278 5 59 443 121 502 2.96e-41 157
MS.gene003171.t1 AT3G06250 26.196 439 255 9 20 457 235 605 2.93e-39 151
MS.gene003171.t1 AT3G06250 26.196 439 255 9 20 457 235 605 2.93e-39 151
MS.gene003171.t1 AT3G06250 26.196 439 255 9 20 457 235 605 2.93e-39 151
MS.gene003171.t1 AT1G76320 26.969 419 268 10 20 432 42 428 3.17e-39 150
MS.gene003171.t1 AT2G27110 27.586 377 248 7 63 435 108 463 4.39e-39 151
MS.gene003171.t1 AT2G27110 27.586 377 248 7 63 435 108 463 4.39e-39 151
MS.gene003171.t1 AT1G76320 26.969 419 268 10 20 432 42 428 5.30e-39 150
MS.gene003171.t1 AT1G76320 26.969 419 268 10 20 432 42 428 5.34e-39 150
MS.gene003171.t1 AT1G76320 26.969 419 268 10 20 432 42 428 5.34e-39 150
MS.gene003171.t1 AT4G38170 28.623 276 186 4 171 443 24 291 9.89e-39 147
MS.gene003171.t1 AT2G27110 29.758 289 195 3 149 435 36 318 2.28e-38 148
MS.gene003171.t1 AT1G10240 26.895 409 264 12 21 418 95 479 1.58e-34 137
MS.gene003171.t1 AT1G10240 26.895 409 264 12 21 418 95 479 1.58e-34 137
MS.gene003171.t1 AT5G18960 25.170 441 260 11 20 457 256 629 8.70e-34 135
MS.gene003171.t1 AT5G18960 25.170 441 260 11 20 457 256 629 8.70e-34 135
MS.gene003171.t1 AT5G28530 26.214 412 265 11 5 398 84 474 3.05e-33 133
MS.gene003171.t1 AT5G28530 26.214 412 265 11 5 398 84 474 3.05e-33 133
MS.gene003171.t1 AT5G28530 26.214 412 265 11 5 398 84 474 3.47e-33 133
MS.gene003171.t1 AT3G22170 22.072 444 309 8 5 443 100 511 5.82e-33 132
MS.gene003171.t1 AT3G22170 22.072 444 309 8 5 443 100 511 5.82e-33 132
MS.gene003171.t1 AT2G32250 23.843 432 259 9 5 431 68 434 2.14e-29 122
MS.gene003171.t1 AT2G32250 23.843 432 259 9 5 431 27 393 2.48e-29 122
MS.gene003171.t1 AT2G32250 23.843 432 259 9 5 431 27 393 2.63e-29 122
MS.gene003171.t1 AT2G32250 23.843 432 259 9 5 431 68 434 3.08e-29 121
MS.gene003171.t1 AT2G32250 23.843 432 259 9 5 431 68 434 3.08e-29 121
MS.gene003171.t1 AT2G32250 23.843 432 259 9 5 431 68 434 3.29e-29 121
MS.gene003171.t1 AT2G32250 23.843 432 259 9 5 431 68 434 3.29e-29 121
MS.gene003171.t1 AT2G32250 23.843 432 259 9 5 431 68 434 3.29e-29 121
MS.gene003171.t1 AT1G80010 25.459 436 285 14 4 429 129 534 1.00e-28 120
MS.gene003171.t1 AT4G19990 28.731 268 184 4 155 419 106 369 1.85e-28 119
MS.gene003171.t1 AT4G19990 28.731 268 184 4 155 419 163 426 2.33e-28 119
MS.gene003171.t1 AT4G19990 28.731 268 184 4 155 419 177 440 2.44e-28 119
MS.gene003171.t1 AT4G19990 28.731 268 184 4 155 419 163 426 2.46e-28 119
MS.gene003171.t1 AT4G19990 28.731 268 184 4 155 419 163 426 2.46e-28 119
MS.gene003171.t1 AT4G19990 28.731 268 184 4 155 419 163 426 3.10e-28 118
MS.gene003171.t1 AT4G19990 28.731 268 184 4 155 419 163 426 3.10e-28 118
MS.gene003171.t1 AT1G52520 22.517 453 312 10 2 448 112 531 5.94e-26 111
MS.gene003171.t1 AT5G28530 22.637 402 229 14 5 398 84 411 1.52e-13 73.2
MS.gene003171.t1 AT5G28530 22.637 402 229 14 5 398 84 411 1.67e-13 73.2

Find 64 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGCTGAGTTGGACTTTA+AGG 0.133287 2.1:+62786712 MS.gene003171:CDS
TTTCGATGAGTTAACTAATT+TGG 0.156761 2.1:+62786403 MS.gene003171:CDS
CTTTAGTCATTTCAACATTA+TGG 0.194287 2.1:+62786670 MS.gene003171:CDS
CAACAAGATTATGCTCTATT+TGG 0.198611 2.1:+62785619 MS.gene003171:CDS
TTCATTTCAGCTGCCTTTCT+TGG 0.201003 2.1:+62786122 MS.gene003171:intron
CATCGTAAGAGTGTGTTATT+TGG 0.276792 2.1:+62786155 MS.gene003171:CDS
TATGGTTTGAGGTTTCTTAT+TGG 0.280533 2.1:-62786249 None:intergenic
AATCAGATTTCGACTACAAT+TGG 0.318540 2.1:+62786444 MS.gene003171:CDS
ACCAGCCTGGTCTGTGTATA+TGG 0.341000 2.1:-62786267 None:intergenic
GCCGATATTTATTGTTTGTT+CGG 0.341758 2.1:-62785669 None:intergenic
TATGCATTGGTCTTCAGTTT+GGG 0.370760 2.1:+62786544 MS.gene003171:CDS
AACAATAAATATCGGCCATT+AGG 0.388497 2.1:+62785676 MS.gene003171:CDS
ACCGAACAAACAATAAATAT+CGG 0.389395 2.1:+62785668 MS.gene003171:CDS
GTATGCATTGGTCTTCAGTT+TGG 0.392120 2.1:+62786543 MS.gene003171:CDS
TTCTCATACTCAACAAGAAC+TGG 0.395633 2.1:-62785139 None:intergenic
CGTTATGTTTGTAACAAAGA+AGG 0.427485 2.1:+62785064 MS.gene003171:CDS
CGAGAAGTAAATGAAGTTCA+AGG 0.430014 2.1:+62785316 MS.gene003171:CDS
AGCTGGAATATATTTGAAGT+TGG 0.433136 2.1:+62785198 MS.gene003171:CDS
TGGTCTGTGTATATGGTTTG+AGG 0.447350 2.1:-62786260 None:intergenic
GAAAGGGTTGGTTGTAAAGC+TGG 0.447509 2.1:+62785181 MS.gene003171:CDS
GCTTTAATAAATTCTAAAGC+TGG 0.450264 2.1:+62785346 MS.gene003171:CDS
TGGTCTTTGCTCATGGCACA+TGG 0.452802 2.1:+62786334 MS.gene003171:CDS
GGCCTACTTCGGACTTTAAG+TGG 0.458978 2.1:+62786498 MS.gene003171:CDS
ACAAAATAAGAAATCGGATA+AGG 0.469178 2.1:+62785030 MS.gene003171:CDS
GAAGTGATGGGTCAAGGAGT+TGG 0.484292 2.1:+62785391 MS.gene003171:CDS
TTACAACCAACCCTTTCCTC+TGG 0.485330 2.1:-62785175 None:intergenic
TCTAATGACAACTCGTCAAA+AGG 0.488137 2.1:+62785459 MS.gene003171:CDS
CTCAAGTAGCACAAATGCTC+TGG 0.489977 2.1:-62785286 None:intergenic
CAATTCACAAAATAAGAAAT+CGG 0.490263 2.1:+62785024 MS.gene003171:CDS
ATGATTGTCAAAACCAAGAA+AGG 0.491378 2.1:-62786135 None:intergenic
ATCAGATTTCGACTACAATT+GGG 0.491708 2.1:+62786445 MS.gene003171:CDS
CGTCAAAAGGAGATGGTGGC+TGG 0.492100 2.1:+62785472 MS.gene003171:CDS
ACATTATGGTTCAGAGAATG+AGG 0.494022 2.1:+62786684 MS.gene003171:CDS
GACCGCATAAGCTGACTGTT+GGG 0.496307 2.1:-62786764 None:intergenic
GAGAACATCTTATGAAGTGA+TGG 0.499875 2.1:+62785378 MS.gene003171:CDS
TGTCTTCTGCAGCATCAACT+TGG 0.502977 2.1:-62785564 None:intergenic
AAATGCTCTGGTTTATGTAA+TGG 0.504865 2.1:-62785274 None:intergenic
CTCATTCAAATCGTATGCAT+TGG 0.507227 2.1:+62786531 MS.gene003171:CDS
TTTAAGTCCGAAAATCGAAA+AGG 0.508080 2.1:-62785430 None:intergenic
GAGGGATAATCATGCTGAGT+TGG 0.508852 2.1:+62786703 MS.gene003171:CDS
ATTGGTCTTCAGTTTGGGTG+AGG 0.509410 2.1:+62786549 MS.gene003171:CDS
TGTCTATAAGATATATAAGT+GGG 0.514682 2.1:+62785234 MS.gene003171:CDS
TAAAGAATCGAACAAGTGAA+TGG 0.519618 2.1:-62786652 None:intergenic
TAACAAAGAAGGTTTCAAGA+AGG 0.525236 2.1:+62785075 MS.gene003171:CDS
AATCGAACAAGTGAATGGTC+TGG 0.540971 2.1:-62786647 None:intergenic
AACAAAGAAGGTTTCAAGAA+GGG 0.545537 2.1:+62785076 MS.gene003171:CDS
ACTTCAACAACGCACCAGCC+TGG 0.557139 2.1:-62786280 None:intergenic
AATGAAGCTCTCTCGAAACC+AGG 0.565261 2.1:+62785526 MS.gene003171:CDS
GTGATGGGTCAAGGAGTTGG+AGG 0.568802 2.1:+62785394 MS.gene003171:CDS
ATGTCTATAAGATATATAAG+TGG 0.572287 2.1:+62785233 MS.gene003171:CDS
GGACCGCATAAGCTGACTGT+TGG 0.579264 2.1:-62786765 None:intergenic
TCTTATGAAGTGATGGGTCA+AGG 0.589029 2.1:+62785385 MS.gene003171:CDS
ACCATATACACAGACCAGGC+TGG 0.590176 2.1:+62786266 MS.gene003171:CDS
GACAACTCGTCAAAAGGAGA+TGG 0.599038 2.1:+62785465 MS.gene003171:CDS
AGAACATCTTATGAAGTGAT+GGG 0.601988 2.1:+62785379 MS.gene003171:CDS
AACTCGTCAAAAGGAGATGG+TGG 0.603142 2.1:+62785468 MS.gene003171:CDS
ATCCCAACAGTCAGCTTATG+CGG 0.606153 2.1:+62786762 MS.gene003171:CDS
AGAACTGGACTGTCACATGT+TGG 0.620791 2.1:-62785124 None:intergenic
AGCCACTTAAAGTCCGAAGT+AGG 0.621799 2.1:-62786500 None:intergenic
GGGTCAAGGAGTTGGAGGCA+CGG 0.621882 2.1:+62785399 MS.gene003171:CDS
GGTCTTTGCTCATGGCACAT+GGG 0.639768 2.1:+62786335 MS.gene003171:CDS
CATTATGGTTCAGAGAATGA+GGG 0.643278 2.1:+62786685 MS.gene003171:CDS
GATTTCAGCTTATCGACAGA+CGG 0.644926 2.1:-62787235 None:intergenic
TCAAACCATATACACAGACC+AGG 0.671057 2.1:+62786262 MS.gene003171:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTCTATAAGATATATAAG+TGG + chr2.1:62785233-62785252 MS.gene003171:CDS 20.0%
!! CAATTCACAAAATAAGAAAT+CGG + chr2.1:62785024-62785043 MS.gene003171:CDS 20.0%
!! TGTCTATAAGATATATAAGT+GGG + chr2.1:62785234-62785253 MS.gene003171:CDS 20.0%
!!! AATTTAATGTTCTGGTTTAT+GGG + chr2.1:62785851-62785870 MS.gene003171:intron 20.0%
!!! ATGATGAAAAACTGTTTTAA+TGG + chr2.1:62786473-62786492 MS.gene003171:CDS 20.0%
!!! TGAATGTTTATATTGATTGA+AGG + chr2.1:62785823-62785842 MS.gene003171:intron 20.0%
! AAAACACCTTGAAAAACATT+CGG - chr2.1:62786311-62786330 None:intergenic 25.0%
! ACAAAATAAGAAATCGGATA+AGG + chr2.1:62785030-62785049 MS.gene003171:CDS 25.0%
! ACCGAACAAACAATAAATAT+CGG + chr2.1:62785668-62785687 MS.gene003171:CDS 25.0%
! AGTACAAAATACTAACCTAA+TGG - chr2.1:62785694-62785713 None:intergenic 25.0%
! CATAATAGTATTTGAAGGAA+AGG - chr2.1:62786844-62786863 None:intergenic 25.0%
! CTTTAGTCATTTCAACATTA+TGG + chr2.1:62786670-62786689 MS.gene003171:CDS 25.0%
! TGAAATTTGAATGAATGTTC+TGG + chr2.1:62785741-62785760 MS.gene003171:intron 25.0%
! TGAATAAATGAAAAGCAAGA+TGG - chr2.1:62786809-62786828 None:intergenic 25.0%
! TTCCTTCAAATACTATTATG+AGG + chr2.1:62786844-62786863 MS.gene003171:intron 25.0%
! TTTCGATGAGTTAACTAATT+TGG + chr2.1:62786403-62786422 MS.gene003171:CDS 25.0%
!! AGGTTTAGAATTTAATGTTC+TGG + chr2.1:62785843-62785862 MS.gene003171:intron 25.0%
!! TGTTGTATTTTGTTCTGATT+TGG + chr2.1:62786099-62786118 MS.gene003171:intron 25.0%
!!! ATGTTGATAATGATAATGAG+AGG + chr2.1:62786945-62786964 MS.gene003171:intron 25.0%
!!! CTTATTTTGTGAATTGTTCT+TGG - chr2.1:62785020-62785039 None:intergenic 25.0%
!!! GAATTTAATGTTCTGGTTTA+TGG + chr2.1:62785850-62785869 MS.gene003171:intron 25.0%
!!! GCTTTAATAAATTCTAAAGC+TGG + chr2.1:62785346-62785365 MS.gene003171:CDS 25.0%
!!! TGAAAAACTGTTTTAATGGA+AGG + chr2.1:62786477-62786496 MS.gene003171:CDS 25.0%
!!! TGTTGATAATGATAATGAGA+GGG + chr2.1:62786946-62786965 MS.gene003171:intron 25.0%
AAACACATATGATCTTTCCA+TGG - chr2.1:62785914-62785933 None:intergenic 30.0%
AACAAAGAAGGTTTCAAGAA+GGG + chr2.1:62785076-62785095 MS.gene003171:CDS 30.0%
AACAATAAATATCGGCCATT+AGG + chr2.1:62785676-62785695 MS.gene003171:CDS 30.0%
AATCAGATTTCGACTACAAT+TGG + chr2.1:62786444-62786463 MS.gene003171:CDS 30.0%
AGAACATCTTATGAAGTGAT+GGG + chr2.1:62785379-62785398 MS.gene003171:CDS 30.0%
ATCAGATTTCGACTACAATT+GGG + chr2.1:62786445-62786464 MS.gene003171:CDS 30.0%
ATGATTGTCAAAACCAAGAA+AGG - chr2.1:62786138-62786157 None:intergenic 30.0%
ATTATGATCTTCAAACCTTG+GGG - chr2.1:62787017-62787036 None:intergenic 30.0%
CAACAAGATTATGCTCTATT+TGG + chr2.1:62785619-62785638 MS.gene003171:CDS 30.0%
CGTTATGTTTGTAACAAAGA+AGG + chr2.1:62785064-62785083 MS.gene003171:CDS 30.0%
CTCCTCATAATAGTATTTGA+AGG - chr2.1:62786849-62786868 None:intergenic 30.0%
CTGGTATATGTGTGTTAATT+TGG + chr2.1:62785780-62785799 MS.gene003171:intron 30.0%
CTTCAAATACTATTATGAGG+AGG + chr2.1:62786847-62786866 MS.gene003171:intron 30.0%
GAGAATGCAAAGAAAAATCT+CGG + chr2.1:62786359-62786378 MS.gene003171:CDS 30.0%
GATTATGATCTTCAAACCTT+GGG - chr2.1:62787018-62787037 None:intergenic 30.0%
GCCGATATTTATTGTTTGTT+CGG - chr2.1:62785672-62785691 None:intergenic 30.0%
TAAAGAAAAACCAGAGGAAA+GGG + chr2.1:62785165-62785184 MS.gene003171:CDS 30.0%
TAAAGAATCGAACAAGTGAA+TGG - chr2.1:62786655-62786674 None:intergenic 30.0%
TAACAAAGAAGGTTTCAAGA+AGG + chr2.1:62785075-62785094 MS.gene003171:CDS 30.0%
TGGATATCATAGTAAAAACC+TGG - chr2.1:62785547-62785566 None:intergenic 30.0%
TGGTGTATACTTGTTTACTA+CGG - chr2.1:62786789-62786808 None:intergenic 30.0%
TTTAAGTCCGAAAATCGAAA+AGG - chr2.1:62785433-62785452 None:intergenic 30.0%
TTTCTATTTACACAGCACAA+TGG + chr2.1:62786058-62786077 MS.gene003171:intron 30.0%
! AAATGCTCTGGTTTATGTAA+TGG - chr2.1:62785277-62785296 None:intergenic 30.0%
! AGCTGGAATATATTTGAAGT+TGG + chr2.1:62785198-62785217 MS.gene003171:CDS 30.0%
! CAAAGTTTTCACAATTGAGA+AGG + chr2.1:62786904-62786923 MS.gene003171:intron 30.0%
! GAATCTTCCTTTTCGATTTT+CGG + chr2.1:62785423-62785442 MS.gene003171:CDS 30.0%
! TATGGTTTGAGGTTTCTTAT+TGG - chr2.1:62786252-62786271 None:intergenic 30.0%
! TCAATTCCGAATGTTTTTCA+AGG + chr2.1:62786302-62786321 MS.gene003171:CDS 30.0%
!! ACATGTTTTCAAGATTTTGG+AGG + chr2.1:62787129-62787148 MS.gene003171:intron 30.0%
!! ATCATAATCGACTTGATGAA+AGG + chr2.1:62787029-62787048 MS.gene003171:intron 30.0%
!! ATGTTCTGGTTTAGAATTGA+AGG + chr2.1:62785755-62785774 MS.gene003171:intron 30.0%
!! TCATAATCGACTTGATGAAA+GGG + chr2.1:62787030-62787049 MS.gene003171:intron 30.0%
!! TCGACATGTTTTCAAGATTT+TGG + chr2.1:62787126-62787145 MS.gene003171:intron 30.0%
!!! AAGACATAGCCAGTATTTTT+TGG + chr2.1:62785581-62785600 MS.gene003171:CDS 30.0%
!!! AGACATAGCCAGTATTTTTT+GGG + chr2.1:62785582-62785601 MS.gene003171:CDS 30.0%
!!! CTGCACAATATGTTTTAAAG+CGG + chr2.1:62787194-62787213 MS.gene003171:intron 30.0%
!!! GTTTTTCAAGGTGTTTTTCA+TGG + chr2.1:62786314-62786333 MS.gene003171:CDS 30.0%
ACATTATGGTTCAGAGAATG+AGG + chr2.1:62786684-62786703 MS.gene003171:CDS 35.0%
CATAAATTCCAAGGCAAGAT+AGG - chr2.1:62785881-62785900 None:intergenic 35.0%
CATTATGGTTCAGAGAATGA+GGG + chr2.1:62786685-62786704 MS.gene003171:CDS 35.0%
CGAGAAGTAAATGAAGTTCA+AGG + chr2.1:62785316-62785335 MS.gene003171:CDS 35.0%
CGATTATGATCTTCAAACCT+TGG - chr2.1:62787019-62787038 None:intergenic 35.0%
CTAAAGAAAAACCAGAGGAA+AGG + chr2.1:62785164-62785183 MS.gene003171:CDS 35.0%
CTCATTCAAATCGTATGCAT+TGG + chr2.1:62786531-62786550 MS.gene003171:CDS 35.0%
GAAAGCTAAAGAAAAACCAG+AGG + chr2.1:62785159-62785178 MS.gene003171:CDS 35.0%
GAGAACATCTTATGAAGTGA+TGG + chr2.1:62785378-62785397 MS.gene003171:CDS 35.0%
GTCTGCTTAATCCTAAAAAC+AGG + chr2.1:62785101-62785120 MS.gene003171:CDS 35.0%
TCTAATGACAACTCGTCAAA+AGG + chr2.1:62785459-62785478 MS.gene003171:CDS 35.0%
TGTACAGAGCATAAATTCCA+AGG - chr2.1:62785890-62785909 None:intergenic 35.0%
TTCTCATACTCAACAAGAAC+TGG - chr2.1:62785142-62785161 None:intergenic 35.0%
! CATCGTAAGAGTGTGTTATT+TGG + chr2.1:62786155-62786174 MS.gene003171:CDS 35.0%
! GGTTTCGAATGTTGATGTTT+TGG + chr2.1:62786967-62786986 MS.gene003171:intron 35.0%
! TCTTTCAATGCTTTTCTTCG+TGG + chr2.1:62786614-62786633 MS.gene003171:CDS 35.0%
! TGGTTTAGAATTGAAGGTTC+TGG + chr2.1:62785761-62785780 MS.gene003171:intron 35.0%
! TTTTAATGGAAGGCCTACTT+CGG + chr2.1:62786487-62786506 MS.gene003171:CDS 35.0%
! TTTTTCATGGTCTTTGCTCA+TGG + chr2.1:62786327-62786346 MS.gene003171:CDS 35.0%
!! CGCTTTAAAACATATTGTGC+AGG - chr2.1:62787196-62787215 None:intergenic 35.0%
!! TATGCATTGGTCTTCAGTTT+GGG + chr2.1:62786544-62786563 MS.gene003171:CDS 35.0%
!! TTCAAGATTTTGGAGGTCTT+AGG + chr2.1:62787136-62787155 MS.gene003171:intron 35.0%
!!! AGACATCAGCTACTTTTGAT+TGG + chr2.1:62786198-62786217 MS.gene003171:CDS 35.0%
!!! CACAATATGTTTTAAAGCGG+TGG + chr2.1:62787197-62787216 MS.gene003171:intron 35.0%
AATCGAACAAGTGAATGGTC+TGG - chr2.1:62786650-62786669 None:intergenic 40.0%
ACCTATGATCTTTGCATAGC+TGG - chr2.1:62786008-62786027 None:intergenic 40.0%
ATGAGGAGGACACAACAAAA+GGG + chr2.1:62786861-62786880 MS.gene003171:intron 40.0%
ATGTCGTATGTTTGAGAACC+GGG + chr2.1:62787093-62787112 MS.gene003171:intron 40.0%
ATTTATGCTCTGTACAGCCA+TGG + chr2.1:62785894-62785913 MS.gene003171:intron 40.0%
CATGTCGTATGTTTGAGAAC+CGG + chr2.1:62787092-62787111 MS.gene003171:intron 40.0%
TATGAGGAGGACACAACAAA+AGG + chr2.1:62786860-62786879 MS.gene003171:intron 40.0%
TCAAACCATATACACAGACC+AGG + chr2.1:62786262-62786281 MS.gene003171:CDS 40.0%
TCCAGCTATGCAAAGATCAT+AGG + chr2.1:62786004-62786023 MS.gene003171:intron 40.0%
TCCATCTGCCCAAAAAATAC+TGG - chr2.1:62785593-62785612 None:intergenic 40.0%
TGGTCTGTGTATATGGTTTG+AGG - chr2.1:62786263-62786282 None:intergenic 40.0%
TTCATTTCAGCTGCCTTTCT+TGG + chr2.1:62786122-62786141 MS.gene003171:intron 40.0%
TTGAAGAAAACCTTTCCCCA+AGG + chr2.1:62786999-62787018 MS.gene003171:intron 40.0%
! TCATGCTGAGTTGGACTTTA+AGG + chr2.1:62786712-62786731 MS.gene003171:CDS 40.0%
!! AAGATTTTGGAGGTCTTAGG+TGG + chr2.1:62787139-62787158 MS.gene003171:intron 40.0%
!! GTATGCATTGGTCTTCAGTT+TGG + chr2.1:62786543-62786562 MS.gene003171:CDS 40.0%
!! TCACATGTTGGCCTGTTTTT+AGG - chr2.1:62785115-62785134 None:intergenic 40.0%
!! TCTTATGAAGTGATGGGTCA+AGG + chr2.1:62785385-62785404 MS.gene003171:CDS 40.0%
AACTCGTCAAAAGGAGATGG+TGG + chr2.1:62785468-62785487 MS.gene003171:CDS 45.0%
AATGAAGCTCTCTCGAAACC+AGG + chr2.1:62785526-62785545 MS.gene003171:CDS 45.0%
AGAACTGGACTGTCACATGT+TGG - chr2.1:62785127-62785146 None:intergenic 45.0%
AGCCACTTAAAGTCCGAAGT+AGG - chr2.1:62786503-62786522 None:intergenic 45.0%
ATCCCAACAGTCAGCTTATG+CGG + chr2.1:62786762-62786781 MS.gene003171:CDS 45.0%
CATGTCGACATAAGAAACCC+CGG - chr2.1:62787114-62787133 None:intergenic 45.0%
CTCAAGTAGCACAAATGCTC+TGG - chr2.1:62785289-62785308 None:intergenic 45.0%
GAAAAACCAGAGGAAAGGGT+TGG + chr2.1:62785169-62785188 MS.gene003171:CDS 45.0%
GACAACTCGTCAAAAGGAGA+TGG + chr2.1:62785465-62785484 MS.gene003171:CDS 45.0%
GAGGGATAATCATGCTGAGT+TGG + chr2.1:62786703-62786722 MS.gene003171:CDS 45.0%
GATCTTCAAACCTTGGGGAA+AGG - chr2.1:62787012-62787031 None:intergenic 45.0%
TGTCGTATGTTTGAGAACCG+GGG + chr2.1:62787094-62787113 MS.gene003171:intron 45.0%
TGTCTTCTGCAGCATCAACT+TGG - chr2.1:62785567-62785586 None:intergenic 45.0%
TTACAACCAACCCTTTCCTC+TGG - chr2.1:62785178-62785197 None:intergenic 45.0%
! GTGAGGTCACATTTTACAGC+TGG + chr2.1:62786566-62786585 MS.gene003171:CDS 45.0%
!! ATTGGTCTTCAGTTTGGGTG+AGG + chr2.1:62786549-62786568 MS.gene003171:CDS 45.0%
!! GAAAGGGTTGGTTGTAAAGC+TGG + chr2.1:62785181-62785200 MS.gene003171:CDS 45.0%
!!! GCCAGTATTTTTTGGGCAGA+TGG + chr2.1:62785589-62785608 MS.gene003171:CDS 45.0%
ACCAGCCTGGTCTGTGTATA+TGG - chr2.1:62786270-62786289 None:intergenic 50.0%
ACCATATACACAGACCAGGC+TGG + chr2.1:62786266-62786285 MS.gene003171:CDS 50.0%
AGGGTTGTCACAGTCGACAT+TGG + chr2.1:62787049-62787068 MS.gene003171:intron 50.0%
GACCGCATAAGCTGACTGTT+GGG - chr2.1:62786767-62786786 None:intergenic 50.0%
GGCCTACTTCGGACTTTAAG+TGG + chr2.1:62786498-62786517 MS.gene003171:CDS 50.0%
GGGTTGTCACAGTCGACATT+GGG + chr2.1:62787050-62787069 MS.gene003171:intron 50.0%
GGTCTTTGCTCATGGCACAT+GGG + chr2.1:62786335-62786354 MS.gene003171:CDS 50.0%
TGGGTGATCCTATCTTGCCT+TGG + chr2.1:62785870-62785889 MS.gene003171:intron 50.0%
TGGTCTTTGCTCATGGCACA+TGG + chr2.1:62786334-62786353 MS.gene003171:CDS 50.0%
!! GAAGTGATGGGTCAAGGAGT+TGG + chr2.1:62785391-62785410 MS.gene003171:CDS 50.0%
ACTTCAACAACGCACCAGCC+TGG - chr2.1:62786283-62786302 None:intergenic 55.0%
GGACCGCATAAGCTGACTGT+TGG - chr2.1:62786768-62786787 None:intergenic 55.0%
! CGTCAAAAGGAGATGGTGGC+TGG + chr2.1:62785472-62785491 MS.gene003171:CDS 55.0%
!! GTGATGGGTCAAGGAGTTGG+AGG + chr2.1:62785394-62785413 MS.gene003171:CDS 55.0%
GGGTCAAGGAGTTGGAGGCA+CGG + chr2.1:62785399-62785418 MS.gene003171:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 62785007 62787253 62785007 ID=MS.gene003171
chr2.1 mRNA 62785007 62787253 62785007 ID=MS.gene003171.t1;Parent=MS.gene003171
chr2.1 exon 62785007 62785697 62785007 ID=MS.gene003171.t1.exon1;Parent=MS.gene003171.t1
chr2.1 CDS 62785007 62785697 62785007 ID=cds.MS.gene003171.t1;Parent=MS.gene003171.t1
chr2.1 exon 62786132 62786783 62786132 ID=MS.gene003171.t1.exon2;Parent=MS.gene003171.t1
chr2.1 CDS 62786132 62786783 62786132 ID=cds.MS.gene003171.t1;Parent=MS.gene003171.t1
chr2.1 exon 62787214 62787253 62787214 ID=MS.gene003171.t1.exon3;Parent=MS.gene003171.t1
chr2.1 CDS 62787214 62787253 62787214 ID=cds.MS.gene003171.t1;Parent=MS.gene003171.t1
Gene Sequence

>MS.gene003171

ATGTTGAAGTCCAAGAACAATTCACAAAATAAGAAATCGGATAAGGTACATTATTTGCGTTATGTTTGTAACAAAGAAGGTTTCAAGAAGGGAAGTCTGCTTAATCCTAAAAACAGGCCAACATGTGACAGTCCAGTTCTTGTTGAGTATGAGAAAGCTAAAGAAAAACCAGAGGAAAGGGTTGGTTGTAAAGCTGGAATATATTTGAAGTTGGATGAAGCGTTGAATGTCTATAAGATATATAAGTGGGAAGTTGATCACTGTCATCCATTACATAAACCAGAGCATTTGTGCTACTTGAGATCATTTCGAGAAGTAAATGAAGTTCAAGGACAACTTGCTTTAATAAATTCTAAAGCTGGAATGTCGATGAGAACATCTTATGAAGTGATGGGTCAAGGAGTTGGAGGCACGGAGAATCTTCCTTTTCGATTTTCGGACTTAAAGAACTATCTAATGACAACTCGTCAAAAGGAGATGGTGGCTGGTGAAGCAACTGTTATTCAAGAATTCTTTAGAAATGAAGCTCTCTCGAAACCAGGTTTTTACTATGATATCCAAGTTGATGCTGCAGAAGACATAGCCAGTATTTTTTGGGCAGATGGAATTATGCAACAAGATTATGCTCTATTTGGTGATGTTGTCAGTTTTGATACAACTTACCGAACAAACAATAAATATCGGCCATTAGGTTAGTATTTTGTACTTCTCACAGTTTTTAATTCTTATATTCTTGAAATTTGAATGAATGTTCTGGTTTAGAATTGAAGGTTCTGGTATATGTGTGTTAATTTGGCTCTTGTGTGTGTTTAGAATTGAATGTTTATATTGATTGAAGGTTTAGAATTTAATGTTCTGGTTTATGGGTGATCCTATCTTGCCTTGGAATTTATGCTCTGTACAGCCATGGAAAGATCATATGTGTTTTTTTATCGATGATAAATAGCTCTGTCTGTGTTTGCGAGTTTAGACATCTCGCTTGAGAAGTTGTGCTATGTCCAGCTATGCAAAGATCATAGGTGTTTTTTTACAGTTGTTAAATAAATAGCTTTTTCTATTTACACAGCACAATGGTTTTATATTTTTTAAATATGTTGTATTTTGTTCTGATTTGGTTCATTTCAGCTGCCTTTCTTGGTTTTGACAATCATCGTAAGAGTGTGTTATTTGGTGCTGCGCTACTGTATGATGAGACATCAGCTACTTTTGATTGGTTGTTTACAACTTTTTTGAAGTGTATGTCCAATAAGAAACCTCAAACCATATACACAGACCAGGCTGGTGCGTTGTTGAAGTCAATTCCGAATGTTTTTCAAGGTGTTTTTCATGGTCTTTGCTCATGGCACATGGGAGAGAATGCAAAGAAAAATCTCGGCTCTCGTGCAAACAGTGCATTTTTCGATGAGTTAACTAATTTGGTTTCAAATGTCGAAGATGAATCAGATTTCGACTACAATTGGGATCAGATGATGAAAAACTGTTTTAATGGAAGGCCTACTTCGGACTTTAAGTGGCTTGTTCAAACTCATTCAAATCGTATGCATTGGTCTTCAGTTTGGGTGAGGTCACATTTTACAGCTGGTTTGAAAACGACACAGTTAAGTGAGTCTTTCAATGCTTTTCTTCGTGGATTTTTGCAGCCAGACCATTCACTTGTTCGATTCTTTAGTCATTTCAACATTATGGTTCAGAGAATGAGGGATAATCATGCTGAGTTGGACTTTAAGGCTGCAAACACTAGAACAAAAAATAATTATCCCAACAGTCAGCTTATGCGGTCCGTAGTAAACAAGTATACACCATCTTGCTTTTCATTTATTCACAGTCAGTATGACCTTTCCTTCAAATACTATTATGAGGAGGACACAACAAAAGGGTCAGAATTGAACAAGTTCTTCAAAGTTTTCACAATTGAGAAGGTTGATTATAATTACGATGATGTTGATAATGATAATGAGAGGGTTTCGAATGTTGATGTTTTGGATGCAGAATTTGAAGAAAACCTTTCCCCAAGGTTTGAAGATCATAATCGACTTGATGAAAGGGTTGTCACAGTCGACATTGGGAGCAAAAGTTTTACTTGTTCATGTCGTATGTTTGAGAACCGGGGTTTCTTATGTCGACATGTTTTCAAGATTTTGGAGGTCTTAGGTGGTCATGTGCAATATCATTTTTTGAAGACTATACCTGCACAATATGTTTTAAAGCGGTGGACTAGAGATGTGCGTCCGTCTGTCGATAAGCTGA
Protein sequence

>MS.gene003171.t1

MLKSKNNSQNKKSDKVHYLRYVCNKEGFKKGSLLNPKNRPTCDSPVLVEYEKAKEKPEERVGCKAGIYLKLDEALNVYKIYKWEVDHCHPLHKPEHLCYLRSFREVNEVQGQLALINSKAGMSMRTSYEVMGQGVGGTENLPFRFSDLKNYLMTTRQKEMVAGEATVIQEFFRNEALSKPGFYYDIQVDAAEDIASIFWADGIMQQDYALFGDVVSFDTTYRTNNKYRPLAAFLGFDNHRKSVLFGAALLYDETSATFDWLFTTFLKCMSNKKPQTIYTDQAGALLKSIPNVFQGVFHGLCSWHMGENAKKNLGSRANSAFFDELTNLVSNVEDESDFDYNWDQMMKNCFNGRPTSDFKWLVQTHSNRMHWSSVWVRSHFTAGLKTTQLSESFNAFLRGFLQPDHSLVRFFSHFNIMVQRMRDNHAELDFKAANTRTKNNYPNSQLMRGGLEMCVRLSIS