AlfalfaGEDB | MS.gene003171

M. sativa cultivar XinJiangDaYe / MS.gene003171

KEGG: -
GO: -
PFAM: PF03101.18 PF10551.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003171.t1	XP_024632961.1	90.4	456	36	1	1	448	81	536	5.90E-246	859.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003171.t1	Q9SZL8	28.0	432	292	5	6	435	104	518	3.9e-52	207.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003171.t1	D3YBB9	84.3	447	70	0	2	448	114	560	1.3e-226	795.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene003171.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003171.t1	MTR_0558s0020	88.745	231	26	0	1	231	66	296	6.88e-157	446
MS.gene003171.t1	MTR_6g090505	83.544	237	39	0	1	237	1	237	1.05e-146	423
MS.gene003171.t1	MTR_6g090505	67.647	102	6	2	332	431	230	306	5.06e-35	134
MS.gene003171.t1	MTR_1g083640	90.196	204	20	0	1	204	81	284	6.25e-140	403
MS.gene003171.t1	MTR_8g446020	79.825	228	46	0	4	231	29	256	7.94e-135	389
MS.gene003171.t1	MTR_2g014100	87.209	172	22	0	1	172	74	245	1.54e-109	324
MS.gene003171.t1	MTR_0337s0040	78.125	192	42	0	4	195	30	221	2.24e-109	323
MS.gene003171.t1	MTR_1g055240	88.028	142	17	0	27	168	3	144	8.05e-90	270
MS.gene003171.t1	MTR_0019s0290	82.353	153	24	1	20	169	8	160	6.16e-89	268
MS.gene003171.t1	MTR_3g008240	86.232	138	19	0	1	138	66	203	1.60e-83	256

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003171.t1	AT4G38180	29.314	423	270	6	20	435	118	518	4.24e-60	210
MS.gene003171.t1	AT4G15090	26.031	388	278	5	59	443	121	502	2.96e-41	157
MS.gene003171.t1	AT4G15090	26.031	388	278	5	59	443	121	502	2.96e-41	157
MS.gene003171.t1	AT4G15090	26.031	388	278	5	59	443	121	502	2.96e-41	157
MS.gene003171.t1	AT4G15090	26.031	388	278	5	59	443	121	502	2.96e-41	157
MS.gene003171.t1	AT4G15090	26.031	388	278	5	59	443	121	502	2.96e-41	157
MS.gene003171.t1	AT3G06250	26.196	439	255	9	20	457	235	605	2.93e-39	151
MS.gene003171.t1	AT3G06250	26.196	439	255	9	20	457	235	605	2.93e-39	151
MS.gene003171.t1	AT3G06250	26.196	439	255	9	20	457	235	605	2.93e-39	151
MS.gene003171.t1	AT1G76320	26.969	419	268	10	20	432	42	428	3.17e-39	150

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Find 64 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCTCTGGTTTATGTAA+TGG	0.504865	2.1:-62785274	None:intergenic
AACAAAGAAGGTTTCAAGAA+GGG	0.545537	2.1:+62785076	MS.gene003171:CDS
AACAATAAATATCGGCCATT+AGG	0.388497	2.1:+62785676	MS.gene003171:CDS
AACTCGTCAAAAGGAGATGG+TGG	0.603142	2.1:+62785468	MS.gene003171:CDS
AATCAGATTTCGACTACAAT+TGG	0.318540	2.1:+62786444	MS.gene003171:CDS
AATCGAACAAGTGAATGGTC+TGG	0.540971	2.1:-62786647	None:intergenic
AATGAAGCTCTCTCGAAACC+AGG	0.565261	2.1:+62785526	MS.gene003171:CDS
ACAAAATAAGAAATCGGATA+AGG	0.469178	2.1:+62785030	MS.gene003171:CDS
ACATTATGGTTCAGAGAATG+AGG	0.494022	2.1:+62786684	MS.gene003171:CDS
ACCAGCCTGGTCTGTGTATA+TGG	0.341000	2.1:-62786267	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACACATATGATCTTTCCA+TGG	-	chr2.1:62785914-62785933	None:intergenic	30.0%
AACAAAGAAGGTTTCAAGAA+GGG	+	chr2.1:62785076-62785095	MS.gene003171:CDS	30.0%
AACAATAAATATCGGCCATT+AGG	+	chr2.1:62785676-62785695	MS.gene003171:CDS	30.0%
AATCAGATTTCGACTACAAT+TGG	+	chr2.1:62786444-62786463	MS.gene003171:CDS	30.0%
AGAACATCTTATGAAGTGAT+GGG	+	chr2.1:62785379-62785398	MS.gene003171:CDS	30.0%
ATCAGATTTCGACTACAATT+GGG	+	chr2.1:62786445-62786464	MS.gene003171:CDS	30.0%
ATGATTGTCAAAACCAAGAA+AGG	-	chr2.1:62786138-62786157	None:intergenic	30.0%
ATTATGATCTTCAAACCTTG+GGG	-	chr2.1:62787017-62787036	None:intergenic	30.0%
CAACAAGATTATGCTCTATT+TGG	+	chr2.1:62785619-62785638	MS.gene003171:CDS	30.0%
CGTTATGTTTGTAACAAAGA+AGG	+	chr2.1:62785064-62785083	MS.gene003171:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	62785007	62787253	62785007	ID=MS.gene003171
chr2.1	mRNA	62785007	62787253	62785007	ID=MS.gene003171.t1;Parent=MS.gene003171
chr2.1	exon	62785007	62785697	62785007	ID=MS.gene003171.t1.exon1;Parent=MS.gene003171.t1
chr2.1	CDS	62785007	62785697	62785007	ID=cds.MS.gene003171.t1;Parent=MS.gene003171.t1
chr2.1	exon	62786132	62786783	62786132	ID=MS.gene003171.t1.exon2;Parent=MS.gene003171.t1
chr2.1	CDS	62786132	62786783	62786132	ID=cds.MS.gene003171.t1;Parent=MS.gene003171.t1
chr2.1	exon	62787214	62787253	62787214	ID=MS.gene003171.t1.exon3;Parent=MS.gene003171.t1
chr2.1	CDS	62787214	62787253	62787214	ID=cds.MS.gene003171.t1;Parent=MS.gene003171.t1

Gene Sequence

>MS.gene003171

ATGTTGAAGTCCAAGAACAATTCACAAAATAAGAAATCGGATAAGGTACATTATTTGCGTTATGTTTGTAACAAAGAAGGTTTCAAGAAGGGAAGTCTGCTTAATCCTAAAAACAGGCCAACATGTGACAGTCCAGTTCTTGTTGAGTATGAGAAAGCTAAAGAAAAACCAGAGGAAAGGGTTGGTTGTAAAGCTGGAATATATTTGAAGTTGGATGAAGCGTTGAATGTCTATAAGATATATAAGTGGGAAGTTGATCACTGTCATCCATTACATAAACCAGAGCATTTGTGCTACTTGAGATCATTTCGAGAAGTAAATGAAGTTCAAGGACAACTTGCTTTAATAAATTCTAAAGCTGGAATGTCGATGAGAACATCTTATGAAGTGATGGGTCAAGGAGTTGGAGGCACGGAGAATCTTCCTTTTCGATTTTCGGACTTAAAGAACTATCTAATGACAACTCGTCAAAAGGAGATGGTGGCTGGTGAAGCAACTGTTATTCAAGAATTCTTTAGAAATGAAGCTCTCTCGAAACCAGGTTTTTACTATGATATCCAAGTTGATGCTGCAGAAGACATAGCCAGTATTTTTTGGGCAGATGGAATTATGCAACAAGATTATGCTCTATTTGGTGATGTTGTCAGTTTTGATACAACTTACCGAACAAACAATAAATATCGGCCATTAGGTTAGTATTTTGTACTTCTCACAGTTTTTAATTCTTATATTCTTGAAATTTGAATGAATGTTCTGGTTTAGAATTGAAGGTTCTGGTATATGTGTGTTAATTTGGCTCTTGTGTGTGTTTAGAATTGAATGTTTATATTGATTGAAGGTTTAGAATTTAATGTTCTGGTTTATGGGTGATCCTATCTTGCCTTGGAATTTATGCTCTGTACAGCCATGGAAAGATCATATGTGTTTTTTTATCGATGATAAATAGCTCTGTCTGTGTTTGCGAGTTTAGACATCTCGCTTGAGAAGTTGTGCTATGTCCAGCTATGCAAAGATCATAGGTGTTTTTTTACAGTTGTTAAATAAATAGCTTTTTCTATTTACACAGCACAATGGTTTTATATTTTTTAAATATGTTGTATTTTGTTCTGATTTGGTTCATTTCAGCTGCCTTTCTTGGTTTTGACAATCATCGTAAGAGTGTGTTATTTGGTGCTGCGCTACTGTATGATGAGACATCAGCTACTTTTGATTGGTTGTTTACAACTTTTTTGAAGTGTATGTCCAATAAGAAACCTCAAACCATATACACAGACCAGGCTGGTGCGTTGTTGAAGTCAATTCCGAATGTTTTTCAAGGTGTTTTTCATGGTCTTTGCTCATGGCACATGGGAGAGAATGCAAAGAAAAATCTCGGCTCTCGTGCAAACAGTGCATTTTTCGATGAGTTAACTAATTTGGTTTCAAATGTCGAAGATGAATCAGATTTCGACTACAATTGGGATCAGATGATGAAAAACTGTTTTAATGGAAGGCCTACTTCGGACTTTAAGTGGCTTGTTCAAACTCATTCAAATCGTATGCATTGGTCTTCAGTTTGGGTGAGGTCACATTTTACAGCTGGTTTGAAAACGACACAGTTAAGTGAGTCTTTCAATGCTTTTCTTCGTGGATTTTTGCAGCCAGACCATTCACTTGTTCGATTCTTTAGTCATTTCAACATTATGGTTCAGAGAATGAGGGATAATCATGCTGAGTTGGACTTTAAGGCTGCAAACACTAGAACAAAAAATAATTATCCCAACAGTCAGCTTATGCGGTCCGTAGTAAACAAGTATACACCATCTTGCTTTTCATTTATTCACAGTCAGTATGACCTTTCCTTCAAATACTATTATGAGGAGGACACAACAAAAGGGTCAGAATTGAACAAGTTCTTCAAAGTTTTCACAATTGAGAAGGTTGATTATAATTACGATGATGTTGATAATGATAATGAGAGGGTTTCGAATGTTGATGTTTTGGATGCAGAATTTGAAGAAAACCTTTCCCCAAGGTTTGAAGATCATAATCGACTTGATGAAAGGGTTGTCACAGTCGACATTGGGAGCAAAAGTTTTACTTGTTCATGTCGTATGTTTGAGAACCGGGGTTTCTTATGTCGACATGTTTTCAAGATTTTGGAGGTCTTAGGTGGTCATGTGCAATATCATTTTTTGAAGACTATACCTGCACAATATGTTTTAAAGCGGTGGACTAGAGATGTGCGTCCGTCTGTCGATAAGCTGA

Protein sequence

>MS.gene003171.t1

MLKSKNNSQNKKSDKVHYLRYVCNKEGFKKGSLLNPKNRPTCDSPVLVEYEKAKEKPEERVGCKAGIYLKLDEALNVYKIYKWEVDHCHPLHKPEHLCYLRSFREVNEVQGQLALINSKAGMSMRTSYEVMGQGVGGTENLPFRFSDLKNYLMTTRQKEMVAGEATVIQEFFRNEALSKPGFYYDIQVDAAEDIASIFWADGIMQQDYALFGDVVSFDTTYRTNNKYRPLAAFLGFDNHRKSVLFGAALLYDETSATFDWLFTTFLKCMSNKKPQTIYTDQAGALLKSIPNVFQGVFHGLCSWHMGENAKKNLGSRANSAFFDELTNLVSNVEDESDFDYNWDQMMKNCFNGRPTSDFKWLVQTHSNRMHWSSVWVRSHFTAGLKTTQLSESFNAFLRGFLQPDHSLVRFFSHFNIMVQRMRDNHAELDFKAANTRTKNNYPNSQLMRGGLEMCVRLSIS