AlfalfaGEDB | MS.gene003219

M. sativa cultivar XinJiangDaYe / MS.gene003219

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF10551.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003219.t1	XP_024631614.1	87.4	669	40	3	24	664	35	687	0.00E+00	1176

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003219.t1	Q9SSQ4	60.7	651	220	6	44	664	59	703	5.1e-231	802.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003219.t1	A0A396J867	87.4	669	40	3	24	664	35	687	0.0e+00	1176.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene003219.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003219.t1	MTR_6g051425	31.203	266	169	5	71	323	19	283	7.77e-32	127
MS.gene003219.t1	MTR_1g070355	27.426	237	158	7	74	299	79	312	1.13e-15	80.9
MS.gene003219.t1	MTR_4g067290	40.196	102	56	2	69	166	56	156	2.34e-14	73.6
MS.gene003219.t1	MTR_4g067290	40.196	102	56	2	69	166	56	156	2.42e-14	73.6
MS.gene003219.t1	MTR_4g067290	40.196	102	56	2	69	166	76	176	2.65e-14	73.9
MS.gene003219.t1	MTR_4g067290	40.196	102	56	2	69	166	74	174	2.87e-14	73.6
MS.gene003219.t1	MTR_4g067290	40.196	102	56	2	69	166	76	176	2.92e-14	73.6
MS.gene003219.t1	MTR_4g067290	40.196	102	56	2	69	166	116	216	4.68e-14	73.9
MS.gene003219.t1	MTR_2g098880	33.962	106	64	1	67	166	59	164	2.94e-13	70.5
MS.gene003219.t1	MTR_2g098880	33.962	106	64	1	67	166	71	176	3.77e-13	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003219.t1	AT1G52520	59.098	687	239	10	12	664	25	703	0.0	818
MS.gene003219.t1	AT1G80010	43.683	657	315	13	52	662	76	723	4.43e-178	524
MS.gene003219.t1	AT3G22170	32.040	696	366	13	10	653	28	668	3.00e-108	347
MS.gene003219.t1	AT3G22170	32.040	696	366	13	10	653	28	668	3.00e-108	347
MS.gene003219.t1	AT4G15090	32.055	652	388	10	48	659	30	666	5.27e-107	343
MS.gene003219.t1	AT4G15090	32.055	652	388	10	48	659	30	666	5.27e-107	343
MS.gene003219.t1	AT4G15090	32.055	652	388	10	48	659	30	666	5.27e-107	343
MS.gene003219.t1	AT4G15090	32.055	652	388	10	48	659	30	666	5.27e-107	343
MS.gene003219.t1	AT4G15090	32.055	652	388	10	48	659	30	666	5.27e-107	343
MS.gene003219.t1	AT1G76320	34.127	630	335	15	73	655	1	597	2.53e-98	316

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Find 119 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCGATTAGACCATTGAAT+AGG	0.415320	2.1:+62297503	None:intergenic
AACTTAATCCTTATCATGGC+AGG	0.517948	2.1:+62299018	None:intergenic
AACTTGTCCTTCAGATATAC+CGG	0.514192	2.1:+62298115	None:intergenic
AAGTGCCTTACAAGTTGTGG+AGG	0.614403	2.1:-62297474	MS.gene003219:CDS
AATAAGTTGAACCTAAGAAA+AGG	0.515686	2.1:-62298757	MS.gene003219:CDS
AATTTCTCTGGATCATTACA+AGG	0.524035	2.1:-62297444	MS.gene003219:CDS
ACAATGCAATTACACGTGGA+TGG	0.565499	2.1:-62297812	MS.gene003219:CDS
ACATTTCTTCCACTTCAAGT+TGG	0.516480	2.1:+62297849	None:intergenic
ACCATGCAGCAAGCAATCGC+CGG	0.584825	2.1:-62299352	MS.gene003219:CDS
ACCCTATTCAATGGTCTAAT+CGG	0.415941	2.1:-62297505	MS.gene003219:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTTCTCTGGATCATTACA+AGG	-	chr2.1:62300549-62300568	MS.gene003219:intron	30.0%
ACTTGTGTGAAAGATATAGT+TGG	-	chr2.1:62298279-62298298	MS.gene003219:CDS	30.0%
ATAGTCATAACGAAAGAATC+TGG	+	chr2.1:62297649-62297668	None:intergenic	30.0%
ATGACAATGACTAATTCACA+TGG	-	chr2.1:62298122-62298141	MS.gene003219:CDS	30.0%
CACTAACTTAATCCTTATCA+TGG	+	chr2.1:62298982-62299001	None:intergenic	30.0%
CATGATAAGGATTAAGTTAG+TGG	-	chr2.1:62298980-62298999	MS.gene003219:CDS	30.0%
GCATTTAAGGAATGCATTAT+GGG	-	chr2.1:62299346-62299365	MS.gene003219:CDS	30.0%
TAGTCATAACGAAAGAATCT+GGG	+	chr2.1:62297648-62297667	None:intergenic	30.0%
TGCTGCGAATAATTAATACA+TGG	-	chr2.1:62298432-62298451	MS.gene003219:intron	30.0%
TGGATATTCATCATGATTTG+GGG	-	chr2.1:62298251-62298270	MS.gene003219:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	62297379	62300636	62297379	ID=MS.gene003219
chr2.1	mRNA	62297379	62300636	62297379	ID=MS.gene003219.t1;Parent=MS.gene003219
chr2.1	exon	62300568	62300636	62300568	ID=MS.gene003219.t1.exon1;Parent=MS.gene003219.t1
chr2.1	CDS	62300568	62300636	62300568	ID=cds.MS.gene003219.t1;Parent=MS.gene003219.t1
chr2.1	exon	62298491	62299388	62298491	ID=MS.gene003219.t1.exon2;Parent=MS.gene003219.t1
chr2.1	CDS	62298491	62299388	62298491	ID=cds.MS.gene003219.t1;Parent=MS.gene003219.t1
chr2.1	exon	62297379	62298406	62297379	ID=MS.gene003219.t1.exon3;Parent=MS.gene003219.t1
chr2.1	CDS	62297379	62298406	62297379	ID=cds.MS.gene003219.t1;Parent=MS.gene003219.t1

Gene Sequence

>MS.gene003219

ATGACGGGTGATACTGTGTGTGCTCCAAATTATAAAGACTTGTCACTGAGCTCTAATCTCGATGTCACGGTAAATGAATCTTCATCTCCACCTAACAATCATTGCGTATGTGTGTTGTTTTAATGTGTGTTAATGGCTATAGCGGGGTTATAGCACTATAGCGTAGCTGAATTTGAACAAATTGTTATTATCCACGATTAACAACATAGTTTTTGCAGTTTGATGTCGCATTGGACTGGAGTTTATTTGTCCTTTTGCCTTTTGCCCCCAGATTCTTTCGTTATGACTATCTGACTCTTTGGTTGGGAGGGAAGAGAATAGAGGAATAAGTTATAACATGGATTCCAAGTTTTGAATATTGTATTTTTGTAAGAAGTTAGTGTGCAGTTTAGTTTGCCTAAATTGGTGATGATTTGCGTTTCAAACTATTATGTCGTGGCAAGACTTGTAGAACCTGATGCTTGATTCTACTTGTATTGAGACTATTTTGTATTTTCGGTTATCTATGTCCAAAAGGGGTCTCCATGTTTTGAGAAAAACAATGGTGCAATGTCATTGGACTGACAAATTTTTTGTTTGTGCTGCAAATTTCAATGAGGTAAACGAGAGAAGTGCACCGATTGTCTTGTGGTCAATGTTAAAAATAAAAGGGAAGGATGCATGGATTTTAATTTTAATTATCCTGACTAACACTTCTAATTTCTGTCACTTTTACTAAGGTGTTAGGATGTCATAGGTGTGTAATGACAATGACTAATTCACATGGTTATTTTGGACTTTTTTTTTTTTTGAAGAATGGTTATTTTGGACTTTGTTTATTGAGCATTCGGTCTACAATAATTATTAGATTATAAGTCATTATTGAACTGTTTTGGATATTCATCATGATTTGGGGTGTTCACTTGTGTGAAAGATATAGTTGGTATATTGCTTCAAATATATAATGATAGTATATTGTGAGAGAGAGGAAAAGGTTGCACCAATCAGTAATATAAAATTTCAAATTGGAAACTTGTAGACCATCTTTGAGCTAGGTTGTCAAGATGTTCTCTATGCTGCGAATAATTAATACATGGAGAATGCATTGTTTTATTAGTTTCTATTGGTGACTTCCATATGTATAAAAATACTTTTTGCATGTGCAAATAAATAGAATTTTCTTTTTTTTGATTTCATATGTAAAAGAATCTAATGTTCAATATTGTTTTATTAGAGGTAGCTTATTGATTTTGTTTGACAATATGCTAGATGGAAGATACTTCACCATGCAGCAAGCAATCGCCGGATGGAGAATGCATTGAAATTCCAAGAGATGAAGATGGTGCTCTAATTGAATTTGATTGTCAAGACGATATTTCTGAGGGTAAAAAGGAATTTGTTGCACCTGCCGTCGGAATGGAGTTTGAATCATATGATGATGCTTACAATTATTATATTTGCTATGCCAAAGAGGTTGGATTTTGTGTGAGGATTAAGAATTCATGGTTCAAGCGAAATAGCAAAGAAAAATACGGTGCAGTGCTTTGTTGTAGCAGTCAAGGTTTCAAAAGAATAAAAGATGTTAACAATTTGAGAAAAGAAACCAGAACTGGTTGTCCTGCCATGATAAGGATTAAGTTAGTGGAGTCTCAGAGATGGAGGATATGCGAGGTTACTCTCGAACATAACCACATCTTAGGTGCTAAGATACATAAATCCATTAAAAAGATGGGAAGTGGAACTAAAAATAACTCGTTGCCTAGTTCTGATGCAGAGGGGAAAACAATTAAGGTATATCATGCACTTGTGATAGATACAGAAGGTAATGACAATTTAAACTCCAATGCAAGAGATGACAGAGCTTTCTCCAAATATTCTAATAAGTTGAACCTAAGAAAAGGTGACACACAAGCCATTTATAATTTCCTCTGCCGTATGCAATTGACTAATCCAAACTTCTTTTATTTGATGGATTTCAATGATGAAGGGCATTTAAGGAATGCATTATGGGTTGATGCTAAATCTAGGGCTGCATGCAGTTATTTTAGTGATGTCATTTATCTTGACAACACTTATTTGGTAAACAAATATGAAATCCCTCTTGTGGCTTTAGTTGGAATAAATCACCATGGTCAATCAGTGTTATTAGGTTGTGGCCTGCTTGCAGGTGAAATAATAGAATCATATAAATGGTTGTTTAGAACATGGAACACATGTATATCAGGTTGTTCTCCTCAAACTATTATTACAGATAGATGCAAAGCTTTGCAGAGTGTAATTGCTGAAGTTTTTCCCAGATCTCATCATTGCTTTAGCTTGTCATTAATTATGAAAAAAGTACCAGAAAAACTGGGAGGGTTGCACAATTATGATGCAATCAAGAAAGCGCTGATTAAAGCAGTTTATGAGACATCAAAAGTGATTGAATTCGATGCAGCATGGGGATTCATGATTCAATGTTTTGGAGTTAATGATAATGAGTGGCTTTGTTCACTTTACGAAGACCGAGTTCATTGGGCACCGGTATATCTGAAGGACAAGTTTTTTGCTGGTATGTCTGCAACACGGTCTGGGGAAAGCATTAGTCCTTTTTTCGATAAATATGTCCACAAACAGACTTCTTTGAAGGAGTTTCTTGACAAGTATGAATTAGCTCTTTACAAGAAGTACAAGGAAGAATCTCTTGCAGATATTGAATCGAGAAGCTCAAGCCCTTTGCTAAAAACCAAATGCTCTTTTGAACTGCAGCTCTCTAGTATGTACACAAGAGAATTATTCACCAAGTTCCAACTTGAAGTGGAAGAAATGTTCTCTTGTTTTGGGACAATGCAATTACACGTGGATGGCCCTATCACCGTCTTCTTGGTCAAGGAGCGCGTTTTGATCGAGGGAAACAAACGGGAAATTAAGGATTTTGAAGTTGTGTATAGTAAAACATCAGTTGAAGTTCGTTGTATCTGTTGTTGCTTTAATTTTTATGGATATCTTTGTCGGCATGCGTTGTGTGTACTCAATTTTATTGGGGTGGAGGAGATTCCTCCTAAGTACATTCTTTCGCGGTGGAATAAAGATTACAAGCGCTATTGTATTCCCGGTCACAACCGTTTTAGTCCTGATGATACTGATACTGACCCTATTCAATGGTCTAATCGGTTATTTAGAAGTGCCTTACAAGTTGTGGAGGAGGGAGTAATTTCTCTGGATCATTACAAGGTAGCGTTGCAGGCTTTTGAAGAATCACTTCATCAGGTTCGTGATGTAGAACACAAACAGGAGTAA

Protein sequence

>MS.gene003219.t1

MTGDTVCAPNYKDLSLSSNLDVTMEDTSPCSKQSPDGECIEIPRDEDGALIEFDCQDDISEGKKEFVAPAVGMEFESYDDAYNYYICYAKEVGFCVRIKNSWFKRNSKEKYGAVLCCSSQGFKRIKDVNNLRKETRTGCPAMIRIKLVESQRWRICEVTLEHNHILGAKIHKSIKKMGSGTKNNSLPSSDAEGKTIKVYHALVIDTEGNDNLNSNARDDRAFSKYSNKLNLRKGDTQAIYNFLCRMQLTNPNFFYLMDFNDEGHLRNALWVDAKSRAACSYFSDVIYLDNTYLVNKYEIPLVALVGINHHGQSVLLGCGLLADRCKALQSVIAEVFPRSHHCFSLSLIMKKVPEKLGGLHNYDAIKKALIKAVYETSKVIEFDAAWGFMIQCFGVNDNEWLCSLYEDRVHWAPVYLKDKFFAGMSATRSGESISPFFDKYVHKQTSLKEFLDKYELALYKKYKEESLADIESRSSSPLLKTKCSFELQLSSMYTRELFTKFQLEVEEMFSCFGTMQLHVDGPITVFLVKERVLIEGNKREIKDFEVVYSKTSVEVRCICCCFNFYGYLCRHALCVLNFIGVEEIPPKYILSRWNKDYKRYCIPGHNRFSPDDTDTDPIQWSNRLFRSALQVVEEGVISLDHYKVALQAFEESLHQVRDVEHKQE