Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003219.t1 | XP_024631614.1 | 87.4 | 669 | 40 | 3 | 24 | 664 | 35 | 687 | 0.00E+00 | 1176 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003219.t1 | Q9SSQ4 | 60.7 | 651 | 220 | 6 | 44 | 664 | 59 | 703 | 5.1e-231 | 802.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003219.t1 | A0A396J867 | 87.4 | 669 | 40 | 3 | 24 | 664 | 35 | 687 | 0.0e+00 | 1176.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene003219.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003219.t1 | MTR_6g051425 | 31.203 | 266 | 169 | 5 | 71 | 323 | 19 | 283 | 7.77e-32 | 127 |
MS.gene003219.t1 | MTR_1g070355 | 27.426 | 237 | 158 | 7 | 74 | 299 | 79 | 312 | 1.13e-15 | 80.9 |
MS.gene003219.t1 | MTR_4g067290 | 40.196 | 102 | 56 | 2 | 69 | 166 | 56 | 156 | 2.34e-14 | 73.6 |
MS.gene003219.t1 | MTR_4g067290 | 40.196 | 102 | 56 | 2 | 69 | 166 | 56 | 156 | 2.42e-14 | 73.6 |
MS.gene003219.t1 | MTR_4g067290 | 40.196 | 102 | 56 | 2 | 69 | 166 | 76 | 176 | 2.65e-14 | 73.9 |
MS.gene003219.t1 | MTR_4g067290 | 40.196 | 102 | 56 | 2 | 69 | 166 | 74 | 174 | 2.87e-14 | 73.6 |
MS.gene003219.t1 | MTR_4g067290 | 40.196 | 102 | 56 | 2 | 69 | 166 | 76 | 176 | 2.92e-14 | 73.6 |
MS.gene003219.t1 | MTR_4g067290 | 40.196 | 102 | 56 | 2 | 69 | 166 | 116 | 216 | 4.68e-14 | 73.9 |
MS.gene003219.t1 | MTR_2g098880 | 33.962 | 106 | 64 | 1 | 67 | 166 | 59 | 164 | 2.94e-13 | 70.5 |
MS.gene003219.t1 | MTR_2g098880 | 33.962 | 106 | 64 | 1 | 67 | 166 | 71 | 176 | 3.77e-13 | 70.5 |
MS.gene003219.t1 | MTR_2g098920 | 38.235 | 102 | 58 | 2 | 69 | 166 | 80 | 180 | 1.90e-12 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003219.t1 | AT1G52520 | 59.098 | 687 | 239 | 10 | 12 | 664 | 25 | 703 | 0.0 | 818 |
MS.gene003219.t1 | AT1G80010 | 43.683 | 657 | 315 | 13 | 52 | 662 | 76 | 723 | 4.43e-178 | 524 |
MS.gene003219.t1 | AT3G22170 | 32.040 | 696 | 366 | 13 | 10 | 653 | 28 | 668 | 3.00e-108 | 347 |
MS.gene003219.t1 | AT3G22170 | 32.040 | 696 | 366 | 13 | 10 | 653 | 28 | 668 | 3.00e-108 | 347 |
MS.gene003219.t1 | AT4G15090 | 32.055 | 652 | 388 | 10 | 48 | 659 | 30 | 666 | 5.27e-107 | 343 |
MS.gene003219.t1 | AT4G15090 | 32.055 | 652 | 388 | 10 | 48 | 659 | 30 | 666 | 5.27e-107 | 343 |
MS.gene003219.t1 | AT4G15090 | 32.055 | 652 | 388 | 10 | 48 | 659 | 30 | 666 | 5.27e-107 | 343 |
MS.gene003219.t1 | AT4G15090 | 32.055 | 652 | 388 | 10 | 48 | 659 | 30 | 666 | 5.27e-107 | 343 |
MS.gene003219.t1 | AT4G15090 | 32.055 | 652 | 388 | 10 | 48 | 659 | 30 | 666 | 5.27e-107 | 343 |
MS.gene003219.t1 | AT1G76320 | 34.127 | 630 | 335 | 15 | 73 | 655 | 1 | 597 | 2.53e-98 | 316 |
MS.gene003219.t1 | AT1G76320 | 33.968 | 630 | 336 | 14 | 73 | 655 | 1 | 597 | 8.43e-98 | 316 |
MS.gene003219.t1 | AT1G76320 | 33.968 | 630 | 336 | 14 | 73 | 655 | 1 | 597 | 1.12e-97 | 316 |
MS.gene003219.t1 | AT1G76320 | 33.968 | 630 | 336 | 14 | 73 | 655 | 1 | 597 | 1.12e-97 | 316 |
MS.gene003219.t1 | AT4G19990 | 32.007 | 578 | 300 | 11 | 72 | 598 | 24 | 559 | 5.44e-85 | 283 |
MS.gene003219.t1 | AT4G19990 | 32.007 | 578 | 300 | 11 | 72 | 598 | 24 | 559 | 5.44e-85 | 283 |
MS.gene003219.t1 | AT4G19990 | 31.834 | 578 | 301 | 10 | 72 | 598 | 24 | 559 | 6.16e-85 | 283 |
MS.gene003219.t1 | AT4G19990 | 32.007 | 578 | 300 | 11 | 72 | 598 | 24 | 559 | 8.94e-85 | 283 |
MS.gene003219.t1 | AT4G19990 | 32.007 | 578 | 300 | 11 | 72 | 598 | 24 | 559 | 8.94e-85 | 283 |
MS.gene003219.t1 | AT4G19990 | 32.007 | 578 | 300 | 11 | 72 | 598 | 38 | 573 | 9.40e-85 | 283 |
MS.gene003219.t1 | AT2G27110 | 28.683 | 638 | 387 | 15 | 56 | 662 | 41 | 641 | 3.47e-80 | 272 |
MS.gene003219.t1 | AT2G27110 | 28.683 | 638 | 387 | 15 | 56 | 662 | 41 | 641 | 3.47e-80 | 272 |
MS.gene003219.t1 | AT4G38180 | 30.156 | 577 | 353 | 12 | 67 | 602 | 71 | 638 | 3.96e-80 | 270 |
MS.gene003219.t1 | AT4G19990 | 32.600 | 500 | 263 | 8 | 132 | 598 | 44 | 502 | 2.59e-78 | 263 |
MS.gene003219.t1 | AT3G06250 | 28.822 | 628 | 370 | 14 | 55 | 652 | 176 | 756 | 1.08e-75 | 258 |
MS.gene003219.t1 | AT3G06250 | 32.710 | 107 | 63 | 1 | 67 | 173 | 26 | 123 | 1.97e-12 | 70.9 |
MS.gene003219.t1 | AT3G06250 | 28.822 | 628 | 370 | 14 | 55 | 652 | 176 | 756 | 1.08e-75 | 258 |
MS.gene003219.t1 | AT3G06250 | 32.710 | 107 | 63 | 1 | 67 | 173 | 26 | 123 | 1.97e-12 | 70.9 |
MS.gene003219.t1 | AT3G06250 | 28.822 | 628 | 370 | 14 | 55 | 652 | 176 | 756 | 1.08e-75 | 258 |
MS.gene003219.t1 | AT3G06250 | 32.710 | 107 | 63 | 1 | 67 | 173 | 26 | 123 | 1.97e-12 | 70.9 |
MS.gene003219.t1 | AT5G18960 | 29.153 | 614 | 361 | 16 | 69 | 652 | 211 | 780 | 1.89e-73 | 252 |
MS.gene003219.t1 | AT5G18960 | 29.153 | 614 | 361 | 16 | 69 | 652 | 211 | 780 | 1.89e-73 | 252 |
MS.gene003219.t1 | AT2G27110 | 29.938 | 481 | 297 | 8 | 211 | 662 | 27 | 496 | 2.10e-72 | 248 |
MS.gene003219.t1 | AT4G38170 | 29.688 | 448 | 273 | 8 | 239 | 656 | 21 | 456 | 7.91e-61 | 213 |
MS.gene003219.t1 | AT2G32250 | 30.926 | 443 | 253 | 8 | 246 | 653 | 180 | 604 | 6.84e-59 | 212 |
MS.gene003219.t1 | AT2G32250 | 30.926 | 443 | 253 | 8 | 246 | 653 | 139 | 563 | 9.52e-59 | 211 |
MS.gene003219.t1 | AT2G32250 | 30.926 | 443 | 253 | 8 | 246 | 653 | 180 | 604 | 1.01e-58 | 212 |
MS.gene003219.t1 | AT2G32250 | 30.926 | 443 | 253 | 8 | 246 | 653 | 180 | 604 | 1.01e-58 | 212 |
MS.gene003219.t1 | AT2G32250 | 30.926 | 443 | 253 | 8 | 246 | 653 | 180 | 604 | 1.15e-58 | 212 |
MS.gene003219.t1 | AT2G32250 | 30.926 | 443 | 253 | 8 | 246 | 653 | 180 | 604 | 1.15e-58 | 212 |
MS.gene003219.t1 | AT2G32250 | 30.926 | 443 | 253 | 8 | 246 | 653 | 180 | 604 | 1.15e-58 | 212 |
MS.gene003219.t1 | AT2G32250 | 30.926 | 443 | 253 | 8 | 246 | 653 | 139 | 563 | 1.24e-58 | 211 |
MS.gene003219.t1 | AT1G10240 | 24.870 | 575 | 366 | 16 | 69 | 595 | 48 | 604 | 6.54e-41 | 159 |
MS.gene003219.t1 | AT1G10240 | 24.870 | 575 | 366 | 16 | 69 | 595 | 48 | 604 | 6.54e-41 | 159 |
MS.gene003219.t1 | AT5G28530 | 23.375 | 646 | 418 | 18 | 68 | 659 | 54 | 676 | 1.55e-29 | 125 |
MS.gene003219.t1 | AT5G28530 | 23.493 | 647 | 412 | 19 | 68 | 659 | 54 | 672 | 3.25e-29 | 124 |
MS.gene003219.t1 | AT5G28530 | 23.493 | 647 | 412 | 19 | 68 | 659 | 54 | 672 | 3.25e-29 | 124 |
MS.gene003219.t1 | AT5G28530 | 23.896 | 385 | 237 | 11 | 308 | 659 | 252 | 613 | 2.17e-15 | 80.1 |
MS.gene003219.t1 | AT5G28530 | 24.416 | 385 | 231 | 12 | 308 | 659 | 252 | 609 | 2.95e-15 | 79.7 |
MS.gene003219.t1 | AT3G59470 | 36.607 | 112 | 66 | 2 | 58 | 166 | 61 | 170 | 4.41e-14 | 73.2 |
MS.gene003219.t1 | AT3G59470 | 36.607 | 112 | 66 | 2 | 58 | 166 | 61 | 170 | 4.41e-14 | 73.2 |
MS.gene003219.t1 | AT3G59470 | 36.607 | 112 | 66 | 2 | 58 | 166 | 73 | 182 | 4.43e-14 | 73.2 |
Find 119 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTCAACTTATTAGAATATT+TGG | 0.117558 | 2.1:+62298768 | None:intergenic |
AGTGACAAGTCTTTATAATT+TGG | 0.149627 | 2.1:+62300590 | None:intergenic |
TTATCTTGACAACACTTATT+TGG | 0.170954 | 2.1:-62298578 | MS.gene003219:CDS |
GAAGAAATGTTCTCTTGTTT+TGG | 0.204791 | 2.1:-62297836 | MS.gene003219:CDS |
TCAATGATGAAGGGCATTTA+AGG | 0.212565 | 2.1:-62298660 | MS.gene003219:CDS |
GGCATTTAAGGAATGCATTA+TGG | 0.227561 | 2.1:-62298648 | MS.gene003219:CDS |
CATGGTCAATCAGTGTTATT+AGG | 0.249432 | 2.1:-62298508 | MS.gene003219:CDS |
GGATTCATGATTCAATGTTT+TGG | 0.288413 | 2.1:-62298193 | MS.gene003219:CDS |
TTAGGTTGTGGCCTGCTTGC+AGG | 0.291307 | 2.1:-62298490 | MS.gene003219:intron |
TCCATCAAATAAAAGAAGTT+TGG | 0.301368 | 2.1:+62298685 | None:intergenic |
CGATATTTCTGAGGGTAAAA+AGG | 0.306656 | 2.1:-62299265 | MS.gene003219:CDS |
GGTATGTCTGCAACACGGTC+TGG | 0.311372 | 2.1:-62298085 | MS.gene003219:CDS |
CTGCAGTTCAAAAGAGCATT+TGG | 0.324605 | 2.1:+62297910 | None:intergenic |
GGGAAACAAACGGGAAATTA+AGG | 0.326033 | 2.1:-62297747 | MS.gene003219:CDS |
TGGCCCTATCACCGTCTTCT+TGG | 0.333592 | 2.1:-62297792 | MS.gene003219:CDS |
TTGACCAAGAAGACGGTGAT+AGG | 0.355516 | 2.1:+62297788 | None:intergenic |
TCATTACAAGGTAGCGTTGC+AGG | 0.357719 | 2.1:-62297432 | MS.gene003219:CDS |
GCTAAAGCAATGATGAGATC+TGG | 0.357977 | 2.1:+62298342 | None:intergenic |
TACAAGCGCTATTGTATTCC+CGG | 0.363537 | 2.1:-62297563 | MS.gene003219:CDS |
CTCGAACATAACCACATCTT+AGG | 0.364101 | 2.1:-62298958 | MS.gene003219:CDS |
CATGGCAGGACAACCAGTTC+TGG | 0.364832 | 2.1:+62299032 | None:intergenic |
ATCCCTCTTGTGGCTTTAGT+TGG | 0.368401 | 2.1:-62298541 | MS.gene003219:CDS |
GCATTTAAGGAATGCATTAT+GGG | 0.369143 | 2.1:-62298647 | MS.gene003219:CDS |
TGCAGAGGGGAAAACAATTA+AGG | 0.370228 | 2.1:-62298866 | MS.gene003219:CDS |
ACGGCAGAGGAAATTATAAA+TGG | 0.374105 | 2.1:+62298723 | None:intergenic |
CACACAAAATCCAACCTCTT+TGG | 0.375093 | 2.1:+62299170 | None:intergenic |
TATGGGTTGATGCTAAATCT+AGG | 0.378405 | 2.1:-62298630 | MS.gene003219:CDS |
GTGTGAGGATTAAGAATTCA+TGG | 0.378670 | 2.1:-62299152 | MS.gene003219:CDS |
GTATGTCTGCAACACGGTCT+GGG | 0.384016 | 2.1:-62298084 | MS.gene003219:CDS |
TTTACGAAGACCGAGTTCAT+TGG | 0.400562 | 2.1:-62298141 | MS.gene003219:CDS |
AACCGATTAGACCATTGAAT+AGG | 0.415320 | 2.1:+62297503 | None:intergenic |
ACCCTATTCAATGGTCTAAT+CGG | 0.415941 | 2.1:-62297505 | MS.gene003219:CDS |
CCACAAACAGACTTCTTTGA+AGG | 0.418328 | 2.1:-62298029 | MS.gene003219:CDS |
TTCCACTTCAAGTTGGAACT+TGG | 0.419493 | 2.1:+62297856 | None:intergenic |
AGAGCACCATCTTCATCTCT+TGG | 0.423726 | 2.1:+62299309 | None:intergenic |
ACCGATTAGACCATTGAATA+GGG | 0.424191 | 2.1:+62297504 | None:intergenic |
CCTTCAAAGAAGTCTGTTTG+TGG | 0.428381 | 2.1:+62298029 | None:intergenic |
TTGATGGATTTCAATGATGA+AGG | 0.428882 | 2.1:-62298670 | MS.gene003219:CDS |
ATTTCAATGCATTCTCCATC+CGG | 0.439531 | 2.1:+62299333 | None:intergenic |
TCCCTCCTCCACAACTTGTA+AGG | 0.455897 | 2.1:+62297469 | None:intergenic |
CAATCAGTGTTATTAGGTTG+TGG | 0.457165 | 2.1:-62298502 | MS.gene003219:CDS |
TTACGAAGACCGAGTTCATT+GGG | 0.459257 | 2.1:-62298140 | MS.gene003219:CDS |
CATGATAAGGATTAAGTTAG+TGG | 0.463158 | 2.1:-62299013 | MS.gene003219:CDS |
TTCCCCTCTGCATCAGAACT+AGG | 0.470411 | 2.1:+62298877 | None:intergenic |
TTTGATCGAGGGAAACAAAC+GGG | 0.479414 | 2.1:-62297756 | MS.gene003219:CDS |
CCCTCTGATCGGATCATGAC+GGG | 0.480660 | 2.1:-62300629 | None:intergenic |
ATTTGCTATGCCAAAGAGGT+TGG | 0.481359 | 2.1:-62299180 | MS.gene003219:CDS |
TCGTGATGTAGAACACAAAC+AGG | 0.481522 | 2.1:-62297384 | MS.gene003219:CDS |
TTGAGAAAAGAAACCAGAAC+TGG | 0.483081 | 2.1:-62299045 | MS.gene003219:CDS |
CTGGTTGTCCTGCCATGATA+AGG | 0.483669 | 2.1:-62299026 | MS.gene003219:CDS |
TAGAAGTGCCTTACAAGTTG+TGG | 0.488022 | 2.1:-62297477 | MS.gene003219:CDS |
GTGCTTTGTTGTAGCAGTCA+AGG | 0.493576 | 2.1:-62299096 | MS.gene003219:CDS |
AGCTCTGTCATCTCTTGCAT+TGG | 0.494419 | 2.1:+62298795 | None:intergenic |
CTAAAGCAATGATGAGATCT+GGG | 0.494575 | 2.1:+62298343 | None:intergenic |
CACCAAGTTCCAACTTGAAG+TGG | 0.497024 | 2.1:-62297858 | MS.gene003219:CDS |
CTCCTAAGTACATTCTTTCG+CGG | 0.499725 | 2.1:-62297598 | MS.gene003219:CDS |
GGAGGAGGGAGTAATTTCTC+TGG | 0.511124 | 2.1:-62297456 | MS.gene003219:CDS |
AGGACTAAAACGGTTGTGAC+CGG | 0.512191 | 2.1:+62297544 | None:intergenic |
CTATTATTTCACCTGCAAGC+AGG | 0.514073 | 2.1:+62298479 | None:intergenic |
AACTTGTCCTTCAGATATAC+CGG | 0.514192 | 2.1:+62298115 | None:intergenic |
TGCCTTACAAGTTGTGGAGG+AGG | 0.514813 | 2.1:-62297471 | MS.gene003219:CDS |
AATAAGTTGAACCTAAGAAA+AGG | 0.515686 | 2.1:-62298757 | MS.gene003219:CDS |
ACATTTCTTCCACTTCAAGT+TGG | 0.516480 | 2.1:+62297849 | None:intergenic |
AACTTAATCCTTATCATGGC+AGG | 0.517948 | 2.1:+62299018 | None:intergenic |
TGATGGATTTCAATGATGAA+GGG | 0.520805 | 2.1:-62298669 | MS.gene003219:CDS |
CAGTATCATCAGGACTAAAA+CGG | 0.522367 | 2.1:+62297534 | None:intergenic |
GGGTCAGTATCAGTATCATC+AGG | 0.522563 | 2.1:+62297524 | None:intergenic |
AATTTCTCTGGATCATTACA+AGG | 0.524035 | 2.1:-62297444 | MS.gene003219:CDS |
CTGATACTGACCCTATTCAA+TGG | 0.530519 | 2.1:-62297514 | MS.gene003219:CDS |
TCAAACTCCATTCCGACGGC+AGG | 0.533529 | 2.1:+62299231 | None:intergenic |
CACTAACTTAATCCTTATCA+TGG | 0.537066 | 2.1:+62299014 | None:intergenic |
TAGTCAATTGCATACGGCAG+AGG | 0.541377 | 2.1:+62298710 | None:intergenic |
TTGGATTAGTCAATTGCATA+CGG | 0.547484 | 2.1:+62298704 | None:intergenic |
GATTGAATTCGATGCAGCAT+GGG | 0.556013 | 2.1:-62298215 | MS.gene003219:CDS |
ATGGGTTGATGCTAAATCTA+GGG | 0.557484 | 2.1:-62298629 | MS.gene003219:CDS |
TGATTGAATTCGATGCAGCA+TGG | 0.558452 | 2.1:-62298216 | MS.gene003219:CDS |
TGTTGCACCTGCCGTCGGAA+TGG | 0.558619 | 2.1:-62299238 | MS.gene003219:CDS |
TGACCAAGAAGACGGTGATA+GGG | 0.563728 | 2.1:+62297789 | None:intergenic |
ACAATGCAATTACACGTGGA+TGG | 0.565499 | 2.1:-62297812 | MS.gene003219:CDS |
TGCAGCAAGCAATCGCCGGA+TGG | 0.569478 | 2.1:-62299348 | MS.gene003219:CDS |
GAATTTGTTGCACCTGCCGT+CGG | 0.571617 | 2.1:-62299243 | MS.gene003219:CDS |
GCCTTACAAGTTGTGGAGGA+GGG | 0.572299 | 2.1:-62297470 | MS.gene003219:CDS |
TTATATTTGCTATGCCAAAG+AGG | 0.572634 | 2.1:-62299184 | MS.gene003219:CDS |
AGTTAGTGGAGTCTCAGAGA+TGG | 0.573080 | 2.1:-62298999 | MS.gene003219:CDS |
AGCTCTTTACAAGAAGTACA+AGG | 0.577775 | 2.1:-62297984 | MS.gene003219:CDS |
CAAATATGAAATCCCTCTTG+TGG | 0.578562 | 2.1:-62298551 | MS.gene003219:CDS |
TATCACCGTCTTCTTGGTCA+AGG | 0.580733 | 2.1:-62297786 | MS.gene003219:CDS |
GGACTAAAACGGTTGTGACC+GGG | 0.581921 | 2.1:+62297545 | None:intergenic |
ACCATGCAGCAAGCAATCGC+CGG | 0.584825 | 2.1:-62299352 | MS.gene003219:CDS |
TTGTCAAGACGATATTTCTG+AGG | 0.585249 | 2.1:-62299274 | MS.gene003219:CDS |
TAGTGGAGTCTCAGAGATGG+AGG | 0.590281 | 2.1:-62298996 | MS.gene003219:CDS |
TTGCCTAGTTCTGATGCAGA+GGG | 0.592446 | 2.1:-62298880 | MS.gene003219:CDS |
ATACCGGTGCCCAATGAACT+CGG | 0.592551 | 2.1:+62298131 | None:intergenic |
GAAATTCCAAGAGATGAAGA+TGG | 0.592964 | 2.1:-62299315 | MS.gene003219:CDS |
CTAAGTACATTCTTTCGCGG+TGG | 0.595177 | 2.1:-62297595 | MS.gene003219:CDS |
GTATCTTAGCACCTAAGATG+TGG | 0.595734 | 2.1:+62298947 | None:intergenic |
CGCGAAAGAATGTACTTAGG+AGG | 0.597604 | 2.1:+62297599 | None:intergenic |
TCCGGCGATTGCTTGCTGCA+TGG | 0.603156 | 2.1:+62299351 | None:intergenic |
ATTCCAACTAAAGCCACAAG+AGG | 0.609409 | 2.1:+62298538 | None:intergenic |
AAGTGCCTTACAAGTTGTGG+AGG | 0.614403 | 2.1:-62297474 | MS.gene003219:CDS |
TTGGGCACCGGTATATCTGA+AGG | 0.614520 | 2.1:-62298122 | MS.gene003219:CDS |
TGTCAAGACGATATTTCTGA+GGG | 0.614817 | 2.1:-62299273 | MS.gene003219:CDS |
TTCCAACTAAAGCCACAAGA+GGG | 0.616806 | 2.1:+62298539 | None:intergenic |
TATGTCTGCAACACGGTCTG+GGG | 0.623170 | 2.1:-62298083 | MS.gene003219:CDS |
TTGCTGGTATGTCTGCAACA+CGG | 0.624394 | 2.1:-62298090 | MS.gene003219:CDS |
GAGCTCTAATCTCGATGTCA+CGG | 0.627743 | 2.1:-62300567 | MS.gene003219:intron |
GTTGCCTAGTTCTGATGCAG+AGG | 0.630104 | 2.1:-62298881 | MS.gene003219:CDS |
CTAATAACACTGATTGACCA+TGG | 0.632937 | 2.1:+62298509 | None:intergenic |
AGACCGAGTTCATTGGGCAC+CGG | 0.643751 | 2.1:-62298134 | MS.gene003219:CDS |
ATTGAATTCGATGCAGCATG+GGG | 0.645271 | 2.1:-62298214 | MS.gene003219:CDS |
CACCGCGAAAGAATGTACTT+AGG | 0.647338 | 2.1:+62297596 | None:intergenic |
TGGGACAATGCAATTACACG+TGG | 0.650233 | 2.1:-62297816 | MS.gene003219:CDS |
GCGCTCCTTGACCAAGAAGA+CGG | 0.655876 | 2.1:+62297781 | None:intergenic |
TGATTCAAACTCCATTCCGA+CGG | 0.656357 | 2.1:+62299227 | None:intergenic |
TTGGAGTTAATGATAATGAG+TGG | 0.659577 | 2.1:-62298174 | MS.gene003219:CDS |
GCACTTGTGATAGATACAGA+AGG | 0.672329 | 2.1:-62298835 | MS.gene003219:CDS |
TTAGTTGGAATAAATCACCA+TGG | 0.700334 | 2.1:-62298526 | MS.gene003219:CDS |
TCAGAGATGGAGGATATGCG+AGG | 0.712448 | 2.1:-62298986 | MS.gene003219:CDS |
TGCCTAGTTCTGATGCAGAG+GGG | 0.720033 | 2.1:-62298879 | MS.gene003219:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATAATAGAATCATATAAA+TGG | - | chr2.1:62299528-62299547 | MS.gene003219:intron | 10.0% |
!! | AGTAATATAAAATTTCAAAT+TGG | - | chr2.1:62298364-62298383 | MS.gene003219:CDS | 10.0% |
!!! | AAAAAGTATTTTTATACATA+TGG | + | chr2.1:62298494-62298513 | None:intergenic | 10.0% |
!! | AAAATACAATATTCAAAACT+TGG | + | chr2.1:62297726-62297745 | None:intergenic | 15.0% |
!!! | ATTGTTTTATTAGTTTCTAT+TGG | - | chr2.1:62298462-62298481 | MS.gene003219:intron | 15.0% |
!!! | CTTTTTTTTTTTTTGAAGAA+TGG | - | chr2.1:62298155-62298174 | MS.gene003219:CDS | 15.0% |
!!! | TGAAATTTTATATTACTGAT+TGG | + | chr2.1:62298361-62298380 | None:intergenic | 15.0% |
!! | AATGTTAAAAATAAAAGGGA+AGG | - | chr2.1:62298012-62298031 | MS.gene003219:CDS | 20.0% |
!! | ACATAAATCCATTAAAAAGA+TGG | - | chr2.1:62299067-62299086 | MS.gene003219:CDS | 20.0% |
!! | CATAAATCCATTAAAAAGAT+GGG | - | chr2.1:62299068-62299087 | MS.gene003219:CDS | 20.0% |
!! | GGTCAATGTTAAAAATAAAA+GGG | - | chr2.1:62298008-62298027 | MS.gene003219:CDS | 20.0% |
!! | GTTCAACTTATTAGAATATT+TGG | + | chr2.1:62299228-62299247 | None:intergenic | 20.0% |
!! | TGGTCAATGTTAAAAATAAA+AGG | - | chr2.1:62298007-62298026 | MS.gene003219:CDS | 20.0% |
!!! | ATTTTTATGGATATCTTTGT+CGG | - | chr2.1:62300329-62300348 | MS.gene003219:intron | 20.0% |
!!! | GTTCAATATTGTTTTATTAG+AGG | - | chr2.1:62298572-62298591 | MS.gene003219:CDS | 20.0% |
!!! | TGTTGTTGCTTTAATTTTTA+TGG | - | chr2.1:62300316-62300335 | MS.gene003219:intron | 20.0% |
!!! | TTGAGACTATTTTGTATTTT+CGG | - | chr2.1:62297855-62297874 | MS.gene003219:CDS | 20.0% |
!!! | TTTTTGAAGAATGGTTATTT+TGG | - | chr2.1:62298164-62298183 | MS.gene003219:CDS | 20.0% |
! | AAAAACTATGTTGTTAATCG+TGG | + | chr2.1:62297573-62297592 | None:intergenic | 25.0% |
! | AGTGACAAGTCTTTATAATT+TGG | + | chr2.1:62297406-62297425 | None:intergenic | 25.0% |
! | CGAAATAGCAAAGAAAAATA+CGG | - | chr2.1:62298870-62298889 | MS.gene003219:CDS | 25.0% |
! | CTATCTGTAATAATAGTTTG+AGG | + | chr2.1:62299593-62299612 | None:intergenic | 25.0% |
! | TAGAGGAATAAGTTATAACA+TGG | - | chr2.1:62297697-62297716 | MS.gene003219:CDS | 25.0% |
! | TCCATCAAATAAAAGAAGTT+TGG | + | chr2.1:62299311-62299330 | None:intergenic | 25.0% |
! | TGGACATATTTATCGAAAAA+AGG | + | chr2.1:62299947-62299966 | None:intergenic | 25.0% |
! | TTATCTTGACAACACTTATT+TGG | - | chr2.1:62299415-62299434 | MS.gene003219:intron | 25.0% |
! | TTGGATATTCATCATGATTT+GGG | - | chr2.1:62298250-62298269 | MS.gene003219:CDS | 25.0% |
! | TTTGGATATTCATCATGATT+TGG | - | chr2.1:62298249-62298268 | MS.gene003219:CDS | 25.0% |
!! | AAGTCATTATTGAACTGTTT+TGG | - | chr2.1:62298231-62298250 | MS.gene003219:CDS | 25.0% |
!! | AATAAGTTGAACCTAAGAAA+AGG | - | chr2.1:62299236-62299255 | MS.gene003219:CDS | 25.0% |
!! | ACTAATTCACATGGTTATTT+TGG | - | chr2.1:62298131-62298150 | MS.gene003219:CDS | 25.0% |
!! | ATAAATGGTTGTTTAGAACA+TGG | - | chr2.1:62299543-62299562 | MS.gene003219:intron | 25.0% |
!! | TGTGTGTACTCAATTTTATT+GGG | - | chr2.1:62300359-62300378 | MS.gene003219:intron | 25.0% |
!! | TTGTGTGTACTCAATTTTAT+TGG | - | chr2.1:62300358-62300377 | MS.gene003219:intron | 25.0% |
!!! | AAAAAAGTACCAGAAAAACT+GGG | - | chr2.1:62299689-62299708 | MS.gene003219:intron | 25.0% |
!!! | AAGAAATGTTCTCTTGTTTT+GGG | - | chr2.1:62300158-62300177 | MS.gene003219:intron | 25.0% |
!!! | AATTTCTGTCACTTTTACTA+AGG | - | chr2.1:62298076-62298095 | MS.gene003219:CDS | 25.0% |
!!! | GTTGTTTTAATGTGTGTTAA+TGG | - | chr2.1:62297492-62297511 | MS.gene003219:CDS | 25.0% |
!!! | TCCAAACTTCTTTTATTTGA+TGG | - | chr2.1:62299307-62299326 | MS.gene003219:CDS | 25.0% |
AATTTCTCTGGATCATTACA+AGG | - | chr2.1:62300549-62300568 | MS.gene003219:intron | 30.0% | |
ACTTGTGTGAAAGATATAGT+TGG | - | chr2.1:62298279-62298298 | MS.gene003219:CDS | 30.0% | |
ATAGTCATAACGAAAGAATC+TGG | + | chr2.1:62297649-62297668 | None:intergenic | 30.0% | |
ATGACAATGACTAATTCACA+TGG | - | chr2.1:62298122-62298141 | MS.gene003219:CDS | 30.0% | |
CACTAACTTAATCCTTATCA+TGG | + | chr2.1:62298982-62299001 | None:intergenic | 30.0% | |
CATGATAAGGATTAAGTTAG+TGG | - | chr2.1:62298980-62298999 | MS.gene003219:CDS | 30.0% | |
GCATTTAAGGAATGCATTAT+GGG | - | chr2.1:62299346-62299365 | MS.gene003219:CDS | 30.0% | |
TAGTCATAACGAAAGAATCT+GGG | + | chr2.1:62297648-62297667 | None:intergenic | 30.0% | |
TGCTGCGAATAATTAATACA+TGG | - | chr2.1:62298432-62298451 | MS.gene003219:intron | 30.0% | |
TGGATATTCATCATGATTTG+GGG | - | chr2.1:62298251-62298270 | MS.gene003219:CDS | 30.0% | |
TTAGTTGGAATAAATCACCA+TGG | - | chr2.1:62299467-62299486 | MS.gene003219:intron | 30.0% | |
TTGTTTGACAATATGCTAGA+TGG | - | chr2.1:62298608-62298627 | MS.gene003219:CDS | 30.0% | |
! | GACTTTGTTTATTGAGCATT+CGG | - | chr2.1:62298186-62298205 | MS.gene003219:CDS | 30.0% |
! | GGATTCATGATTCAATGTTT+TGG | - | chr2.1:62299800-62299819 | MS.gene003219:intron | 30.0% |
! | GTGTGTACTCAATTTTATTG+GGG | - | chr2.1:62300360-62300379 | MS.gene003219:intron | 30.0% |
! | TTGGAGTTAATGATAATGAG+TGG | - | chr2.1:62299819-62299838 | MS.gene003219:intron | 30.0% |
!! | AGAAATTAGAAGTGTTAGTC+AGG | + | chr2.1:62298063-62298082 | None:intergenic | 30.0% |
!! | CCATTGTTTTTCTCAAAACA+TGG | + | chr2.1:62297904-62297923 | None:intergenic | 30.0% |
!! | GAAAAAAGTACCAGAAAAAC+TGG | - | chr2.1:62299688-62299707 | MS.gene003219:intron | 30.0% |
!! | GAAGAAATGTTCTCTTGTTT+TGG | - | chr2.1:62300157-62300176 | MS.gene003219:intron | 30.0% |
!! | TGATGGATTTCAATGATGAA+GGG | - | chr2.1:62299324-62299343 | MS.gene003219:CDS | 30.0% |
!! | TTATATTTGCTATGCCAAAG+AGG | - | chr2.1:62298809-62298828 | MS.gene003219:CDS | 30.0% |
!! | TTGATGGATTTCAATGATGA+AGG | - | chr2.1:62299323-62299342 | MS.gene003219:CDS | 30.0% |
!! | TTGGATTAGTCAATTGCATA+CGG | + | chr2.1:62299292-62299311 | None:intergenic | 30.0% |
!! | TTTTGAAGAATCACTTCATC+AGG | - | chr2.1:62300585-62300604 | MS.gene003219:CDS | 30.0% |
!!! | AGCATTTGGTTTTTAGCAAA+GGG | + | chr2.1:62300072-62300091 | None:intergenic | 30.0% |
!!! | CCATGTTTTGAGAAAAACAA+TGG | - | chr2.1:62297901-62297920 | MS.gene003219:CDS | 30.0% |
AAACAATGGTGCAATGTCAT+TGG | - | chr2.1:62297915-62297934 | MS.gene003219:CDS | 35.0% | |
AAATAAAAGGGAAGGATGCA+TGG | - | chr2.1:62298020-62298039 | MS.gene003219:CDS | 35.0% | |
AACATTGACCACAAGACAAT+CGG | + | chr2.1:62297998-62298017 | None:intergenic | 35.0% | |
AACCGATTAGACCATTGAAT+AGG | + | chr2.1:62300493-62300512 | None:intergenic | 35.0% | |
AACTTAATCCTTATCATGGC+AGG | + | chr2.1:62298978-62298997 | None:intergenic | 35.0% | |
AACTTGTCCTTCAGATATAC+CGG | + | chr2.1:62299881-62299900 | None:intergenic | 35.0% | |
ACACATACGCAATGATTGTT+AGG | + | chr2.1:62297472-62297491 | None:intergenic | 35.0% | |
ACATGGAACACATGTATATC+AGG | - | chr2.1:62299560-62299579 | MS.gene003219:intron | 35.0% | |
ACATTTCTTCCACTTCAAGT+TGG | + | chr2.1:62300147-62300166 | None:intergenic | 35.0% | |
ACCCTATTCAATGGTCTAAT+CGG | - | chr2.1:62300488-62300507 | MS.gene003219:intron | 35.0% | |
ACCGATTAGACCATTGAATA+GGG | + | chr2.1:62300492-62300511 | None:intergenic | 35.0% | |
ACGCAAATCATCACCAATTT+AGG | + | chr2.1:62297778-62297797 | None:intergenic | 35.0% | |
ACGGCAGAGGAAATTATAAA+TGG | + | chr2.1:62299273-62299292 | None:intergenic | 35.0% | |
AGTCATAACGAAAGAATCTG+GGG | + | chr2.1:62297647-62297666 | None:intergenic | 35.0% | |
ATATTGTGAGAGAGAGGAAA+AGG | - | chr2.1:62298330-62298349 | MS.gene003219:CDS | 35.0% | |
ATGTGTGTTAATGGCTATAG+CGG | - | chr2.1:62297501-62297520 | MS.gene003219:CDS | 35.0% | |
ATTTCAATGCATTCTCCATC+CGG | + | chr2.1:62298663-62298682 | None:intergenic | 35.0% | |
CAAATATGAAATCCCTCTTG+TGG | - | chr2.1:62299442-62299461 | MS.gene003219:intron | 35.0% | |
CAGTATCATCAGGACTAAAA+CGG | + | chr2.1:62300462-62300481 | None:intergenic | 35.0% | |
CGTTTCAAACTATTATGTCG+TGG | - | chr2.1:62297795-62297814 | MS.gene003219:CDS | 35.0% | |
CTAAAGCAATGATGAGATCT+GGG | + | chr2.1:62299653-62299672 | None:intergenic | 35.0% | |
GAAATTCCAAGAGATGAAGA+TGG | - | chr2.1:62298678-62298697 | MS.gene003219:CDS | 35.0% | |
GATAGTATATTGTGAGAGAG+AGG | - | chr2.1:62298324-62298343 | MS.gene003219:CDS | 35.0% | |
GGCATTTAAGGAATGCATTA+TGG | - | chr2.1:62299345-62299364 | MS.gene003219:CDS | 35.0% | |
GTGTGAGGATTAAGAATTCA+TGG | - | chr2.1:62298841-62298860 | MS.gene003219:CDS | 35.0% | |
GTTATGACTATCTGACTCTT+TGG | - | chr2.1:62297658-62297677 | MS.gene003219:CDS | 35.0% | |
TACAAGTAGAATCAAGCATC+AGG | + | chr2.1:62297835-62297854 | None:intergenic | 35.0% | |
TCCATTAAAAAGATGGGAAG+TGG | - | chr2.1:62299074-62299093 | MS.gene003219:CDS | 35.0% | |
TCGGTTATCTATGTCCAAAA+GGG | - | chr2.1:62297874-62297893 | MS.gene003219:CDS | 35.0% | |
TTCGGTTATCTATGTCCAAA+AGG | - | chr2.1:62297873-62297892 | MS.gene003219:CDS | 35.0% | |
TTGAGAAAAGAAACCAGAAC+TGG | - | chr2.1:62298948-62298967 | MS.gene003219:CDS | 35.0% | |
TTGTGCTGCAAATTTCAATG+AGG | - | chr2.1:62297955-62297974 | MS.gene003219:CDS | 35.0% | |
! | AGCTCTTTACAAGAAGTACA+AGG | - | chr2.1:62300009-62300028 | MS.gene003219:intron | 35.0% |
! | CAATCAGTGTTATTAGGTTG+TGG | - | chr2.1:62299491-62299510 | MS.gene003219:intron | 35.0% |
! | CATGGTCAATCAGTGTTATT+AGG | - | chr2.1:62299485-62299504 | MS.gene003219:intron | 35.0% |
! | CGATATTTCTGAGGGTAAAA+AGG | - | chr2.1:62298728-62298747 | MS.gene003219:CDS | 35.0% |
! | CTAATAACACTGATTGACCA+TGG | + | chr2.1:62299487-62299506 | None:intergenic | 35.0% |
! | TCCACTTCCCATCTTTTTAA+TGG | + | chr2.1:62299078-62299097 | None:intergenic | 35.0% |
! | TGTACTCAATTTTATTGGGG+TGG | - | chr2.1:62300363-62300382 | MS.gene003219:intron | 35.0% |
! | TGTCAAGACGATATTTCTGA+GGG | - | chr2.1:62298720-62298739 | MS.gene003219:CDS | 35.0% |
! | TTGTCAAGACGATATTTCTG+AGG | - | chr2.1:62298719-62298738 | MS.gene003219:CDS | 35.0% |
! | TTTTGATCGAGGGAAACAAA+CGG | - | chr2.1:62300236-62300255 | MS.gene003219:intron | 35.0% |
!! | ATGGGTTGATGCTAAATCTA+GGG | - | chr2.1:62299364-62299383 | MS.gene003219:CDS | 35.0% |
!! | GCAGTTTAGTTTGCCTAAAT+TGG | - | chr2.1:62297762-62297781 | MS.gene003219:CDS | 35.0% |
!! | TATGGGTTGATGCTAAATCT+AGG | - | chr2.1:62299363-62299382 | MS.gene003219:CDS | 35.0% |
!! | TCAATGATGAAGGGCATTTA+AGG | - | chr2.1:62299333-62299352 | MS.gene003219:CDS | 35.0% |
!!! | GAGCATTTGGTTTTTAGCAA+AGG | + | chr2.1:62300073-62300092 | None:intergenic | 35.0% |
!!! | GTCACTTTTACTAAGGTGTT+AGG | - | chr2.1:62298083-62298102 | MS.gene003219:CDS | 35.0% |
AAGTACCAGAAAAACTGGGA+GGG | - | chr2.1:62299693-62299712 | MS.gene003219:intron | 40.0% | |
ACAATGCAATTACACGTGGA+TGG | - | chr2.1:62300181-62300200 | MS.gene003219:intron | 40.0% | |
ATTCCAACTAAAGCCACAAG+AGG | + | chr2.1:62299458-62299477 | None:intergenic | 40.0% | |
ATTGAATTCGATGCAGCATG+GGG | - | chr2.1:62299779-62299798 | MS.gene003219:intron | 40.0% | |
CACACAAAATCCAACCTCTT+TGG | + | chr2.1:62298826-62298845 | None:intergenic | 40.0% | |
CATACGCAATGATTGTTAGG+TGG | + | chr2.1:62297469-62297488 | None:intergenic | 40.0% | |
CCACAAACAGACTTCTTTGA+AGG | - | chr2.1:62299964-62299983 | MS.gene003219:intron | 40.0% | |
CCTTCAAAGAAGTCTGTTTG+TGG | + | chr2.1:62299967-62299986 | None:intergenic | 40.0% | |
CGGTTATCTATGTCCAAAAG+GGG | - | chr2.1:62297875-62297894 | MS.gene003219:CDS | 40.0% | |
CTATTATTTCACCTGCAAGC+AGG | + | chr2.1:62299517-62299536 | None:intergenic | 40.0% | |
CTCCTAAGTACATTCTTTCG+CGG | - | chr2.1:62300395-62300414 | MS.gene003219:intron | 40.0% | |
CTCGAACATAACCACATCTT+AGG | - | chr2.1:62299035-62299054 | MS.gene003219:CDS | 40.0% | |
CTGATACTGACCCTATTCAA+TGG | - | chr2.1:62300479-62300498 | MS.gene003219:intron | 40.0% | |
GACTATCTGACTCTTTGGTT+GGG | - | chr2.1:62297663-62297682 | MS.gene003219:CDS | 40.0% | |
GATTGAATTCGATGCAGCAT+GGG | - | chr2.1:62299778-62299797 | MS.gene003219:intron | 40.0% | |
GCACTTGTGATAGATACAGA+AGG | - | chr2.1:62299158-62299177 | MS.gene003219:CDS | 40.0% | |
GCTAAAGCAATGATGAGATC+TGG | + | chr2.1:62299654-62299673 | None:intergenic | 40.0% | |
GGGAAACAAACGGGAAATTA+AGG | - | chr2.1:62300246-62300265 | MS.gene003219:intron | 40.0% | |
GTATCTTAGCACCTAAGATG+TGG | + | chr2.1:62299049-62299068 | None:intergenic | 40.0% | |
GTCATAACGAAAGAATCTGG+GGG | + | chr2.1:62297646-62297665 | None:intergenic | 40.0% | |
TACAAGCGCTATTGTATTCC+CGG | - | chr2.1:62300430-62300449 | MS.gene003219:intron | 40.0% | |
TCGTGATGTAGAACACAAAC+AGG | - | chr2.1:62300609-62300628 | MS.gene003219:CDS | 40.0% | |
TGACTATCTGACTCTTTGGT+TGG | - | chr2.1:62297662-62297681 | MS.gene003219:CDS | 40.0% | |
TGATTCAAACTCCATTCCGA+CGG | + | chr2.1:62298769-62298788 | None:intergenic | 40.0% | |
TGATTGAATTCGATGCAGCA+TGG | - | chr2.1:62299777-62299796 | MS.gene003219:intron | 40.0% | |
TGCAGAGGGGAAAACAATTA+AGG | - | chr2.1:62299127-62299146 | MS.gene003219:CDS | 40.0% | |
TGTGTGTTAATGGCTATAGC+GGG | - | chr2.1:62297502-62297521 | MS.gene003219:CDS | 40.0% | |
TTACGAAGACCGAGTTCATT+GGG | - | chr2.1:62299853-62299872 | MS.gene003219:intron | 40.0% | |
TTCCAACTAAAGCCACAAGA+GGG | + | chr2.1:62299457-62299476 | None:intergenic | 40.0% | |
TTGACAACCTAGCTCAAAGA+TGG | + | chr2.1:62298401-62298420 | None:intergenic | 40.0% | |
TTGTAGACCATCTTTGAGCT+AGG | - | chr2.1:62298391-62298410 | MS.gene003219:intron | 40.0% | |
TTTACGAAGACCGAGTTCAT+TGG | - | chr2.1:62299852-62299871 | MS.gene003219:intron | 40.0% | |
TTTGATCGAGGGAAACAAAC+GGG | - | chr2.1:62300237-62300256 | MS.gene003219:intron | 40.0% | |
TTTGCAGTTTGATGTCGCAT+TGG | - | chr2.1:62297590-62297609 | MS.gene003219:CDS | 40.0% | |
! | AAAGTACCAGAAAAACTGGG+AGG | - | chr2.1:62299692-62299711 | MS.gene003219:intron | 40.0% |
! | AAGAGGTTGGATTTTGTGTG+AGG | - | chr2.1:62298826-62298845 | MS.gene003219:CDS | 40.0% |
! | ACTCAATTTTATTGGGGTGG+AGG | - | chr2.1:62300366-62300385 | MS.gene003219:intron | 40.0% |
! | CTAAGGTGTTAGGATGTCAT+AGG | - | chr2.1:62298093-62298112 | MS.gene003219:CDS | 40.0% |
! | CTTGTGTGTCACCTTTTCTT+AGG | + | chr2.1:62299250-62299269 | None:intergenic | 40.0% |
!! | ATTTGCTATGCCAAAGAGGT+TGG | - | chr2.1:62298813-62298832 | MS.gene003219:CDS | 40.0% |
!! | CTGCAGTTCAAAAGAGCATT+TGG | + | chr2.1:62300086-62300105 | None:intergenic | 40.0% |
!! | TAGAAGTGCCTTACAAGTTG+TGG | - | chr2.1:62300516-62300535 | MS.gene003219:intron | 40.0% |
!! | TTCCACTTCAAGTTGGAACT+TGG | + | chr2.1:62300140-62300159 | None:intergenic | 40.0% |
!!! | CTGAAGGACAAGTTTTTTGC+TGG | - | chr2.1:62299887-62299906 | MS.gene003219:intron | 40.0% |
AAGTGCCTTACAAGTTGTGG+AGG | - | chr2.1:62300519-62300538 | MS.gene003219:intron | 45.0% | |
AGCTCTGTCATCTCTTGCAT+TGG | + | chr2.1:62299201-62299220 | None:intergenic | 45.0% | |
AGGACTAAAACGGTTGTGAC+CGG | + | chr2.1:62300452-62300471 | None:intergenic | 45.0% | |
AGTTAGTGGAGTCTCAGAGA+TGG | - | chr2.1:62298994-62299013 | MS.gene003219:CDS | 45.0% | |
AGTTTGATGTCGCATTGGAC+TGG | - | chr2.1:62297595-62297614 | MS.gene003219:CDS | 45.0% | |
ATCTGACTCTTTGGTTGGGA+GGG | - | chr2.1:62297667-62297686 | MS.gene003219:CDS | 45.0% | |
CACCAAGTTCCAACTTGAAG+TGG | - | chr2.1:62300135-62300154 | MS.gene003219:intron | 45.0% | |
CACCGCGAAAGAATGTACTT+AGG | + | chr2.1:62300400-62300419 | None:intergenic | 45.0% | |
CGCGAAAGAATGTACTTAGG+AGG | + | chr2.1:62300397-62300416 | None:intergenic | 45.0% | |
CTAAGTACATTCTTTCGCGG+TGG | - | chr2.1:62300398-62300417 | MS.gene003219:intron | 45.0% | |
GGGTCAGTATCAGTATCATC+AGG | + | chr2.1:62300472-62300491 | None:intergenic | 45.0% | |
GTGTGTTAATGGCTATAGCG+GGG | - | chr2.1:62297503-62297522 | MS.gene003219:CDS | 45.0% | |
TAGTCAATTGCATACGGCAG+AGG | + | chr2.1:62299286-62299305 | None:intergenic | 45.0% | |
TATCACCGTCTTCTTGGTCA+AGG | - | chr2.1:62300207-62300226 | MS.gene003219:intron | 45.0% | |
TATCTGACTCTTTGGTTGGG+AGG | - | chr2.1:62297666-62297685 | MS.gene003219:CDS | 45.0% | |
TCATTACAAGGTAGCGTTGC+AGG | - | chr2.1:62300561-62300580 | MS.gene003219:intron | 45.0% | |
TGACCAAGAAGACGGTGATA+GGG | + | chr2.1:62300207-62300226 | None:intergenic | 45.0% | |
TGGGACAATGCAATTACACG+TGG | - | chr2.1:62300177-62300196 | MS.gene003219:intron | 45.0% | |
TTGACCAAGAAGACGGTGAT+AGG | + | chr2.1:62300208-62300227 | None:intergenic | 45.0% | |
TTGCTGGTATGTCTGCAACA+CGG | - | chr2.1:62299903-62299922 | MS.gene003219:intron | 45.0% | |
! | AGAGCACCATCTTCATCTCT+TGG | + | chr2.1:62298687-62298706 | None:intergenic | 45.0% |
! | CAAAACATGGAGACCCCTTT+TGG | + | chr2.1:62297891-62297910 | None:intergenic | 45.0% |
! | GAGCTCTAATCTCGATGTCA+CGG | - | chr2.1:62297426-62297445 | MS.gene003219:CDS | 45.0% |
! | GTGCTTTGTTGTAGCAGTCA+AGG | - | chr2.1:62298897-62298916 | MS.gene003219:CDS | 45.0% |
!! | ATCCCTCTTGTGGCTTTAGT+TGG | - | chr2.1:62299452-62299471 | MS.gene003219:intron | 45.0% |
!! | TTGCCTAGTTCTGATGCAGA+GGG | - | chr2.1:62299113-62299132 | MS.gene003219:CDS | 45.0% |
ATACCGGTGCCCAATGAACT+CGG | + | chr2.1:62299865-62299884 | None:intergenic | 50.0% | |
ATCTGGGGGCAAAAGGCAAA+AGG | + | chr2.1:62297632-62297651 | None:intergenic | 50.0% | |
CGAAAGAATCTGGGGGCAAA+AGG | + | chr2.1:62297639-62297658 | None:intergenic | 50.0% | |
CTGGTTGTCCTGCCATGATA+AGG | - | chr2.1:62298967-62298986 | MS.gene003219:CDS | 50.0% | |
GCCTTACAAGTTGTGGAGGA+GGG | - | chr2.1:62300523-62300542 | MS.gene003219:intron | 50.0% | |
GGACTAAAACGGTTGTGACC+GGG | + | chr2.1:62300451-62300470 | None:intergenic | 50.0% | |
GGAGGAGGGAGTAATTTCTC+TGG | - | chr2.1:62300537-62300556 | MS.gene003219:intron | 50.0% | |
GTATGTCTGCAACACGGTCT+GGG | - | chr2.1:62299909-62299928 | MS.gene003219:intron | 50.0% | |
GTTGGGAGGGAAGAGAATAG+AGG | - | chr2.1:62297680-62297699 | MS.gene003219:CDS | 50.0% | |
TAGTGGAGTCTCAGAGATGG+AGG | - | chr2.1:62298997-62299016 | MS.gene003219:CDS | 50.0% | |
TATGTCTGCAACACGGTCTG+GGG | - | chr2.1:62299910-62299929 | MS.gene003219:intron | 50.0% | |
TCAGAGATGGAGGATATGCG+AGG | - | chr2.1:62299007-62299026 | MS.gene003219:CDS | 50.0% | |
TCCCTCCTCCACAACTTGTA+AGG | + | chr2.1:62300527-62300546 | None:intergenic | 50.0% | |
TGCCTTACAAGTTGTGGAGG+AGG | - | chr2.1:62300522-62300541 | MS.gene003219:intron | 50.0% | |
TTCCCCTCTGCATCAGAACT+AGG | + | chr2.1:62299119-62299138 | None:intergenic | 50.0% | |
! | TGCAACCCTCCCAGTTTTTC+TGG | + | chr2.1:62299701-62299720 | None:intergenic | 50.0% |
!! | AAGGAGCGCGTTTTGATCGA+GGG | - | chr2.1:62300226-62300245 | MS.gene003219:intron | 50.0% |
!! | GAAGTGCACCGATTGTCTTG+TGG | - | chr2.1:62297987-62298006 | MS.gene003219:CDS | 50.0% |
!! | GAATTTGTTGCACCTGCCGT+CGG | - | chr2.1:62298750-62298769 | MS.gene003219:CDS | 50.0% |
!! | GTTGCCTAGTTCTGATGCAG+AGG | - | chr2.1:62299112-62299131 | MS.gene003219:CDS | 50.0% |
!! | TGCCTAGTTCTGATGCAGAG+GGG | - | chr2.1:62299114-62299133 | MS.gene003219:CDS | 50.0% |
!! | TTGGGCACCGGTATATCTGA+AGG | - | chr2.1:62299871-62299890 | MS.gene003219:intron | 50.0% |
ACCATGCAGCAAGCAATCGC+CGG | - | chr2.1:62298641-62298660 | MS.gene003219:CDS | 55.0% | |
AGACCGAGTTCATTGGGCAC+CGG | - | chr2.1:62299859-62299878 | MS.gene003219:intron | 55.0% | |
CATGGCAGGACAACCAGTTC+TGG | + | chr2.1:62298964-62298983 | None:intergenic | 55.0% | |
GCGCTCCTTGACCAAGAAGA+CGG | + | chr2.1:62300215-62300234 | None:intergenic | 55.0% | |
GGTATGTCTGCAACACGGTC+TGG | - | chr2.1:62299908-62299927 | MS.gene003219:intron | 55.0% | |
TCAAACTCCATTCCGACGGC+AGG | + | chr2.1:62298765-62298784 | None:intergenic | 55.0% | |
TGGCCCTATCACCGTCTTCT+TGG | - | chr2.1:62300201-62300220 | MS.gene003219:intron | 55.0% | |
! | TTAGGTTGTGGCCTGCTTGC+AGG | - | chr2.1:62299503-62299522 | MS.gene003219:intron | 55.0% |
!! | CAAGGAGCGCGTTTTGATCG+AGG | - | chr2.1:62300225-62300244 | MS.gene003219:intron | 55.0% |
TGCAGCAAGCAATCGCCGGA+TGG | - | chr2.1:62298645-62298664 | MS.gene003219:CDS | 60.0% | |
TGTTGCACCTGCCGTCGGAA+TGG | - | chr2.1:62298755-62298774 | MS.gene003219:CDS | 60.0% | |
! | TCCGGCGATTGCTTGCTGCA+TGG | + | chr2.1:62298645-62298664 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 62297379 | 62300636 | 62297379 | ID=MS.gene003219 |
chr2.1 | mRNA | 62297379 | 62300636 | 62297379 | ID=MS.gene003219.t1;Parent=MS.gene003219 |
chr2.1 | exon | 62300568 | 62300636 | 62300568 | ID=MS.gene003219.t1.exon1;Parent=MS.gene003219.t1 |
chr2.1 | CDS | 62300568 | 62300636 | 62300568 | ID=cds.MS.gene003219.t1;Parent=MS.gene003219.t1 |
chr2.1 | exon | 62298491 | 62299388 | 62298491 | ID=MS.gene003219.t1.exon2;Parent=MS.gene003219.t1 |
chr2.1 | CDS | 62298491 | 62299388 | 62298491 | ID=cds.MS.gene003219.t1;Parent=MS.gene003219.t1 |
chr2.1 | exon | 62297379 | 62298406 | 62297379 | ID=MS.gene003219.t1.exon3;Parent=MS.gene003219.t1 |
chr2.1 | CDS | 62297379 | 62298406 | 62297379 | ID=cds.MS.gene003219.t1;Parent=MS.gene003219.t1 |
Gene Sequence |
Protein sequence |