AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003246

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003246.t1 MTR_1g031930 50.708 353 134 6 1 335 5 335 8.67e-103 306
MS.gene003246.t1 MTR_1g031930 50.362 276 110 7 78 335 8 274 6.02e-71 223
MS.gene003246.t1 MTR_2g029260 86.325 117 16 0 173 289 2 118 5.35e-54 173
MS.gene003246.t1 MTR_6g069870 32.249 369 180 12 30 337 2 361 2.34e-39 143
MS.gene003246.t1 MTR_6g069870 31.818 352 170 12 30 320 2 344 2.45e-34 129
MS.gene003246.t1 MTR_6g069870 35.521 259 143 10 30 277 2 247 1.01e-28 114
MS.gene003246.t1 MTR_2g042900 32.227 211 95 8 129 334 73 240 1.65e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003246.t1 AT3G17860 35.503 338 161 17 28 339 33 339 9.47e-30 117
MS.gene003246.t1 AT3G17860 35.503 338 161 17 28 339 20 326 1.09e-29 116
MS.gene003246.t1 AT3G17860 35.522 335 159 17 31 339 3 306 4.26e-29 114
MS.gene003246.t1 AT3G17860 35.522 335 159 17 31 339 3 306 4.26e-29 114
MS.gene003246.t1 AT1G70700 38.428 229 92 7 106 327 58 244 8.96e-24 99.0
MS.gene003246.t1 AT1G70700 34.978 223 84 7 106 327 58 220 7.98e-22 93.2
MS.gene003246.t1 AT1G48500 30.938 320 147 12 31 336 34 293 6.24e-21 92.0
MS.gene003246.t1 AT1G70700 37.838 222 89 7 106 320 58 237 1.98e-20 90.1
MS.gene003246.t1 AT1G48500 30.033 303 139 11 31 320 4 246 2.72e-16 77.8
MS.gene003246.t1 AT1G48500 30.033 303 139 11 31 320 34 276 3.47e-16 78.2
MS.gene003246.t1 AT5G20900 30.435 161 68 4 170 327 44 163 4.76e-11 61.6

Find 94 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAAAACCAGCAGATATTA+TGG 0.223690 2.4:-60589120 None:intergenic
CGAAACTGAATTCGTTTGAT+TGG 0.273105 2.4:-60589757 None:intergenic
GAGGAGGGTGGTGCATTTGC+AGG 0.320510 2.4:-60590572 None:intergenic
GTAATGGCATCGATTACTTT+AGG 0.330657 2.4:-60590728 None:intergenic
CCCACCATTGGTGCCGTTGC+TGG 0.348704 2.4:+60589897 MS.gene003246:CDS
GATTTCTTGTTATGGTTGTA+TGG 0.351654 2.4:-60591235 None:intergenic
ACTCTTCAGATTTCTTGTTA+TGG 0.360877 2.4:-60591243 None:intergenic
ATATGAAGCCGCCACTGCTT+GGG 0.362357 2.4:+60589841 MS.gene003246:CDS
ACCACTCCTGTTAGCAATGC+CGG 0.371402 2.4:+60590701 MS.gene003246:CDS
GGAGGCCCGGCATTGCTAAC+AGG 0.379698 2.4:-60590707 None:intergenic
AATATGAAGCCGCCACTGCT+TGG 0.394707 2.4:+60589840 MS.gene003246:CDS
GGTGATTGAGGTGCTGTAAC+AGG 0.402330 2.4:-60589870 None:intergenic
TTTCTCGCAGTTAAAACAAC+TGG 0.425409 2.4:+60590671 MS.gene003246:CDS
AAGATGGTAAGTTGGGAAGA+AGG 0.425596 2.4:-60590055 None:intergenic
TTACTAGAGTCAAATGCGTC+TGG 0.431875 2.4:-60589146 None:intergenic
CATAGCACAGACAGAACTTC+AGG 0.434059 2.4:+60590520 MS.gene003246:CDS
CGCATAGAAGATGGTAAGTT+GGG 0.437429 2.4:-60590062 None:intergenic
CGCCATTCCTAGCCAACAAC+AGG 0.438442 2.4:-60590481 None:intergenic
GGCACAAGCTATCCTGTTGT+TGG 0.441454 2.4:+60590469 MS.gene003246:intron
TGTAGGCTTCACAAAAGGTT+CGG 0.441605 2.4:+60589001 MS.gene003246:intron
GCCATTACCATGCTGGCGTC+AGG 0.443156 2.4:+60590743 MS.gene003246:CDS
ACGGCACCAATGGTGGGAAC+AGG 0.446208 2.4:-60589891 None:intergenic
ATATCTATTTCATCGCATAC+TGG 0.447688 2.4:+60590611 MS.gene003246:CDS
ACTCTCTGCTGCTGAACCTC+AGG 0.447860 2.4:+60589172 MS.gene003246:CDS
AGCAGATACTTTGTTGGAGA+AGG 0.457694 2.4:-60589036 None:intergenic
ATCGATTACTTTAGGAGGCC+CGG 0.464340 2.4:-60590720 None:intergenic
TAGAAATCTTTCAATCATGA+TGG 0.465598 2.4:+60589666 MS.gene003246:intron
ACCTGACGCCAGCATGGTAA+TGG 0.472716 2.4:-60590744 None:intergenic
GTAGGCTTCACAAAAGGTTC+GGG 0.473793 2.4:+60589002 MS.gene003246:intron
TCGCATACTGGTGCACAGTC+AGG 0.473936 2.4:+60590623 MS.gene003246:CDS
ATAAAACCAGCAGATATTAT+GGG 0.477557 2.4:-60589119 None:intergenic
TGCATTTGCAGGTTGACTCA+CGG 0.485260 2.4:-60590561 None:intergenic
AAGAGAGATACCTTGTCGGC+AGG 0.487405 2.4:-60590112 None:intergenic
GCAAATGCACCACCCTCCTC+TGG 0.488995 2.4:+60590575 MS.gene003246:CDS
GAAATCAACCATGATGATGA+TGG 0.493023 2.4:+60588208 MS.gene003246:CDS
AGTTGGGAAGAAGGCAGAGA+TGG 0.495544 2.4:-60590046 None:intergenic
TCTGATCCCATAATATCTGC+TGG 0.495658 2.4:+60589113 MS.gene003246:CDS
CAATCACCTGTTCCCACCAT+TGG 0.496425 2.4:+60589885 MS.gene003246:CDS
GTATGCGATGAAATAGATAT+AGG 0.500381 2.4:-60590608 None:intergenic
AAGCTATCCTGTTGTTGGCT+AGG 0.504599 2.4:+60590474 MS.gene003246:CDS
CCACTCCTGTTAGCAATGCC+GGG 0.505459 2.4:+60590702 MS.gene003246:CDS
CAACTTACCATCTTCTATGC+GGG 0.506683 2.4:+60590064 MS.gene003246:CDS
ATCTTCACATCATGTTGTAC+AGG 0.507813 2.4:-60589723 None:intergenic
TATGAAGCCGCCACTGCTTG+GGG 0.511758 2.4:+60589842 MS.gene003246:CDS
TCCAGCAACGGCACCAATGG+TGG 0.513212 2.4:-60589898 None:intergenic
GGGATCAGATAAGATCTTTG+TGG 0.514242 2.4:-60589099 None:intergenic
CCGCATAGAAGATGGTAAGT+TGG 0.523235 2.4:-60590063 None:intergenic
GCATTTGCAGGTTGACTCAC+GGG 0.524091 2.4:-60590560 None:intergenic
GCAGTTACAAAATGATTCCT+CGG 0.526505 2.4:-60589795 None:intergenic
GACAGTACCCGCATAGAAGA+TGG 0.534138 2.4:-60590071 None:intergenic
ATCCTGTTGTTGGCTAGGAA+TGG 0.535261 2.4:+60590479 MS.gene003246:CDS
GGCATTGCTAACAGGAGTGG+TGG 0.535707 2.4:-60590699 None:intergenic
CTCACGGGCACACCGTCACC+AGG 0.540218 2.4:-60590545 None:intergenic
GCAGATACTTTGTTGGAGAA+GGG 0.540845 2.4:-60589035 None:intergenic
CAGTTACAAAATGATTCCTC+GGG 0.542977 2.4:-60589794 None:intergenic
TGGTTGAGCAGATACTTTGT+TGG 0.544831 2.4:-60589042 None:intergenic
AGAGAGATACCTTGTCGGCA+GGG 0.549368 2.4:-60590111 None:intergenic
ACCAAAGAGAGATACCTTGT+CGG 0.549557 2.4:-60590116 None:intergenic
TGCATGATCCATCATCATCA+TGG 0.557307 2.4:-60588216 None:intergenic
AATCGATGCCATTACCATGC+TGG 0.562603 2.4:+60590736 MS.gene003246:CDS
AGAAATCTTTCAATCATGAT+GGG 0.564188 2.4:+60589667 MS.gene003246:intron
CTATGTTACTGCTAAGGAGG+AGG 0.565981 2.4:+60588186 None:intergenic
CAGACAGAACTTCAGGCACC+TGG 0.577240 2.4:+60590527 MS.gene003246:CDS
ACTGGTGCACAGTCAGGCAG+TGG 0.578273 2.4:+60590629 MS.gene003246:CDS
ATGGCATCGATTACTTTAGG+AGG 0.580157 2.4:-60590725 None:intergenic
CATTCCAGCAACGGCACCAA+TGG 0.580478 2.4:-60589901 None:intergenic
ACTACTCTATGTTACTGCTA+AGG 0.583808 2.4:+60588180 None:intergenic
GGCTAGGAATGGCGTATCAG+TGG 0.588783 2.4:+60590490 MS.gene003246:CDS
GAACTTCAGGCACCTGGTGA+CGG 0.589320 2.4:+60590533 MS.gene003246:CDS
ATGCAGCTATACCTCAGGCT+CGG 0.589752 2.4:+60590950 MS.gene003246:intron
CAATGACATCCCTGCCGACA+AGG 0.590191 2.4:+60590102 MS.gene003246:CDS
GTATGTGTAGGCTTCACAAA+AGG 0.590418 2.4:+60588996 MS.gene003246:intron
CCCGGCATTGCTAACAGGAG+TGG 0.596875 2.4:-60590702 None:intergenic
GATGAAATAGATATAGGACT+TGG 0.598998 2.4:-60590602 None:intergenic
ACTGCTGGTCAGAATATGAA+TGG 0.602374 2.4:+60589813 MS.gene003246:CDS
CGTTGATGAACTCATTCCCG+AGG 0.604339 2.4:+60589778 MS.gene003246:CDS
ACTCTATGTTACTGCTAAGG+AGG 0.607768 2.4:+60588183 None:intergenic
TCTTTCAATCATGATGGGCA+AGG 0.608612 2.4:+60589672 MS.gene003246:CDS
CAAAATACCTGACGCCAGCA+TGG 0.618733 2.4:-60590750 None:intergenic
CGATTCAGTCATTCCAGCAA+CGG 0.622512 2.4:-60589910 None:intergenic
AGGACTTGGATGACCAGAGG+AGG 0.630995 2.4:-60590588 None:intergenic
ACCTCAAAAGACATCAAATG+TGG 0.632234 2.4:-60589062 None:intergenic
ATGAAGCCGCCACTGCTTGG+GGG 0.632707 2.4:+60589843 MS.gene003246:CDS
CCAGCAACGGCACCAATGGT+GGG 0.634359 2.4:-60589897 None:intergenic
GGACTTGGATGACCAGAGGA+GGG 0.638831 2.4:-60590587 None:intergenic
AAGGATGCTTTCCGAGCCTG+AGG 0.641286 2.4:-60590961 None:intergenic
GCATTGCTAACAGGAGTGGT+GGG 0.641442 2.4:-60590698 None:intergenic
TTCAATCATGATGGGCAAGG+CGG 0.653055 2.4:+60589675 MS.gene003246:CDS
GATGGATCATGCAAACACTC+TGG 0.653555 2.4:+60588226 MS.gene003246:CDS
CCAACTTACCATCTTCTATG+CGG 0.674088 2.4:+60590063 MS.gene003246:CDS
ATGGTGGGAACAGGTGATTG+AGG 0.679435 2.4:-60589882 None:intergenic
CTTGGATGACCAGAGGAGGG+TGG 0.682495 2.4:-60590584 None:intergenic
TATAGGACTTGGATGACCAG+AGG 0.688185 2.4:-60590591 None:intergenic
CAAAAGGTTCGGGTGCACAG+TGG 0.734863 2.4:+60589012 MS.gene003246:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATTCATTTATTTATTTAT+AGG - chr2.4:60590155-60590174 None:intergenic 10.0%
!! TAAATAAATAAATGAATACA+AGG + chr2.4:60590156-60590175 MS.gene003246:intron 10.0%
!!! ACTTATTTTATTTTAATTTG+AGG - chr2.4:60589533-60589552 None:intergenic 10.0%
!! AAGAAATAAAATATGAATTG+TGG - chr2.4:60590190-60590209 None:intergenic 15.0%
!! CTTCATAAAATAAACAAAAT+TGG - chr2.4:60588500-60588519 None:intergenic 15.0%
!!! ATTTTGTTTAGTGAAATATT+TGG + chr2.4:60590805-60590824 MS.gene003246:intron 15.0%
!!! TAATTTTATGATTGACTTTT+AGG + chr2.4:60589951-60589970 MS.gene003246:intron 15.0%
!! AATAACAAACAATCAATAGA+GGG - chr2.4:60589642-60589661 None:intergenic 20.0%
!! AGAAAGATAGAAACAAAAAA+CGG - chr2.4:60588280-60588299 None:intergenic 20.0%
!! CGTTAACTTAAAGTAAAATA+AGG + chr2.4:60589408-60589427 MS.gene003246:intron 20.0%
!! TAAAGGTTAAAATCAATTGT+AGG + chr2.4:60588749-60588768 MS.gene003246:intron 20.0%
!! TAAATGAATACAAGGTATAA+AGG + chr2.4:60590164-60590183 MS.gene003246:intron 20.0%
!! TAATAACAAACAATCAATAG+AGG - chr2.4:60589643-60589662 None:intergenic 20.0%
!! TTTATTTATTTATAGGCAGA+AGG - chr2.4:60590148-60590167 None:intergenic 20.0%
!!! AAAAAGTAATTTGTGTAGAA+AGG - chr2.4:60591082-60591101 None:intergenic 20.0%
!!! AAAAGTAATTTGTGTAGAAA+GGG - chr2.4:60591081-60591100 None:intergenic 20.0%
!!! AGAATTGATTTTGAAATGTT+CGG - chr2.4:60588846-60588865 None:intergenic 20.0%
!!! ATTCAAATTCAACTTTTGTA+AGG - chr2.4:60588641-60588660 None:intergenic 20.0%
!!! GTTTTACTTTTATCAAGAAA+AGG - chr2.4:60591030-60591049 None:intergenic 20.0%
!!! TTCAAATTCAACTTTTGTAA+GGG - chr2.4:60588640-60588659 None:intergenic 20.0%
! ACACAATACTAAATGATAAG+AGG - chr2.4:60591193-60591212 None:intergenic 25.0%
! ACATATGTCTCATATAAAAG+TGG + chr2.4:60588713-60588732 MS.gene003246:intron 25.0%
! AGAAATCTTTCAATCATGAT+GGG + chr2.4:60589667-60589686 MS.gene003246:intron 25.0%
! ATAAAACCAGCAGATATTAT+GGG - chr2.4:60589122-60589141 None:intergenic 25.0%
! TAATAACTCAATACTGCAAA+TGG - chr2.4:60590871-60590890 None:intergenic 25.0%
! TAGAAATCTTTCAATCATGA+TGG + chr2.4:60589666-60589685 MS.gene003246:intron 25.0%
! TTTATCCCTTAAAGTTTAGT+GGG + chr2.4:60588932-60588951 MS.gene003246:intron 25.0%
!! TTTTATCCCTTAAAGTTTAG+TGG + chr2.4:60588931-60588950 MS.gene003246:intron 25.0%
!!! GATATGATTAGTTTCACTTT+TGG - chr2.4:60588894-60588913 None:intergenic 25.0%
!!! TCATGAGTGTTTAATTTGAT+TGG + chr2.4:60588380-60588399 MS.gene003246:intron 25.0%
!!! TCTTTGATTTGTTTGGTTAA+CGG + chr2.4:60588325-60588344 MS.gene003246:intron 25.0%
!!! TGTGACTTTTTTTACATTGA+CGG + chr2.4:60589369-60589388 MS.gene003246:intron 25.0%
AAGTACTTTCCAATCATGTT+TGG + chr2.4:60588250-60588269 MS.gene003246:intron 30.0%
AATTCCCCACTAAACTTTAA+GGG - chr2.4:60588940-60588959 None:intergenic 30.0%
ACTCTTCAGATTTCTTGTTA+TGG - chr2.4:60591246-60591265 None:intergenic 30.0%
ATATCTATTTCATCGCATAC+TGG + chr2.4:60590611-60590630 MS.gene003246:CDS 30.0%
ATCAGTTTGACAAAATTAGG+TGG - chr2.4:60588576-60588595 None:intergenic 30.0%
ATTAAGCTTGACTATGGTAA+AGG - chr2.4:60590431-60590450 None:intergenic 30.0%
CATAAAACCAGCAGATATTA+TGG - chr2.4:60589123-60589142 None:intergenic 30.0%
CATTTAGTATTGTGTTTGCA+GGG + chr2.4:60591198-60591217 MS.gene003246:intron 30.0%
CTAACTGCAATAATGAGAAA+TGG - chr2.4:60590782-60590801 None:intergenic 30.0%
GATGAAATAGATATAGGACT+TGG - chr2.4:60590605-60590624 None:intergenic 30.0%
GCTTATGAACAAGTAACATT+TGG + chr2.4:60589438-60589457 MS.gene003246:intron 30.0%
GTATGCGATGAAATAGATAT+AGG - chr2.4:60590611-60590630 None:intergenic 30.0%
GTGTGTTAAATTTGTGATTC+CGG + chr2.4:60588450-60588469 MS.gene003246:intron 30.0%
TAATTCCCCACTAAACTTTA+AGG - chr2.4:60588941-60588960 None:intergenic 30.0%
TCATTTAGTATTGTGTTTGC+AGG + chr2.4:60591197-60591216 MS.gene003246:intron 30.0%
TGTGTTAAATTTGTGATTCC+GGG + chr2.4:60588451-60588470 MS.gene003246:intron 30.0%
TTAATGATCGACGATTATGA+CGG + chr2.4:60589338-60589357 MS.gene003246:intron 30.0%
TTATCCCTTAAAGTTTAGTG+GGG + chr2.4:60588933-60588952 MS.gene003246:intron 30.0%
! AGTTGACAACAAATTTTTCC+CGG - chr2.4:60588472-60588491 None:intergenic 30.0%
! CCTAATTTTGTCAAACTGAT+CGG + chr2.4:60588576-60588595 MS.gene003246:intron 30.0%
! CTAATTTTGTCAAACTGATC+GGG + chr2.4:60588577-60588596 MS.gene003246:intron 30.0%
! GATTTCTTGTTATGGTTGTA+TGG - chr2.4:60591238-60591257 None:intergenic 30.0%
! GTGGATTGAACGATAAATAA+AGG + chr2.4:60588732-60588751 MS.gene003246:intron 30.0%
! TTTTGCGTTAACCAAGTTAT+TGG - chr2.4:60590401-60590420 None:intergenic 30.0%
!! CTTTTCTAAAAATCGAGTCA+AGG - chr2.4:60590983-60591002 None:intergenic 30.0%
!! TGAGTGTTTAATTTGATTGG+TGG + chr2.4:60588383-60588402 MS.gene003246:intron 30.0%
!! TGCAACTTCTTTGATTTGTT+TGG + chr2.4:60588318-60588337 MS.gene003246:intron 30.0%
AACGGTTATCCAAACATGAT+TGG - chr2.4:60588262-60588281 None:intergenic 35.0%
ACAAACAATCAATAGAGGGA+AGG - chr2.4:60589638-60589657 None:intergenic 35.0%
ACCATAGTCAAGCTTAATTG+TGG + chr2.4:60590433-60590452 MS.gene003246:intron 35.0%
ACCTCAAAAGACATCAAATG+TGG - chr2.4:60589065-60589084 None:intergenic 35.0%
AGTTACCATCCTAGACTTAA+GGG + chr2.4:60591052-60591071 MS.gene003246:intron 35.0%
ATCTTCACATCATGTTGTAC+AGG - chr2.4:60589726-60589745 None:intergenic 35.0%
CAAACAATCAATAGAGGGAA+GGG - chr2.4:60589637-60589656 None:intergenic 35.0%
CAGTTACAAAATGATTCCTC+GGG - chr2.4:60589797-60589816 None:intergenic 35.0%
CCGATCAGTTTGACAAAATT+AGG - chr2.4:60588579-60588598 None:intergenic 35.0%
CGAAACTGAATTCGTTTGAT+TGG - chr2.4:60589760-60589779 None:intergenic 35.0%
CTAATCAGATTAGAACACAC+TGG - chr2.4:60589469-60589488 None:intergenic 35.0%
CTTGATCACCAACATTACAT+TGG + chr2.4:60590221-60590240 MS.gene003246:intron 35.0%
CTTGGTTAACGCAAAAAACT+TGG + chr2.4:60590405-60590424 MS.gene003246:intron 35.0%
GCAGTTACAAAATGATTCCT+CGG - chr2.4:60589798-60589817 None:intergenic 35.0%
GGTATAGCTGCATAAAAGAT+TGG - chr2.4:60590943-60590962 None:intergenic 35.0%
TAGTTACCATCCTAGACTTA+AGG + chr2.4:60591051-60591070 MS.gene003246:intron 35.0%
TCATTACCCCTCAATTTGAA+GGG - chr2.4:60591111-60591130 None:intergenic 35.0%
TTTCTCGCAGTTAAAACAAC+TGG + chr2.4:60590671-60590690 MS.gene003246:CDS 35.0%
! AATTTAAAGCCTAAACAGCG+CGG - chr2.4:60589214-60589233 None:intergenic 35.0%
! ACCACATTTGATGTCTTTTG+AGG + chr2.4:60589061-60589080 MS.gene003246:CDS 35.0%
! AGGAATCATTTTGTAACTGC+TGG + chr2.4:60589798-60589817 MS.gene003246:CDS 35.0%
! GAAATCAACCATGATGATGA+TGG + chr2.4:60588208-60588227 MS.gene003246:CDS 35.0%
! TTTTACATTGACGGTGTCTA+TGG + chr2.4:60589378-60589397 MS.gene003246:intron 35.0%
!! CAATGTAATGTTGGTGATCA+AGG - chr2.4:60590223-60590242 None:intergenic 35.0%
!! GTAATGGCATCGATTACTTT+AGG - chr2.4:60590731-60590750 None:intergenic 35.0%
!! TCGATTTTTAGAAAAGCGCA+AGG + chr2.4:60590987-60591006 MS.gene003246:CDS 35.0%
AATCAATAGAGGGAAGGGAA+GGG - chr2.4:60589632-60589651 None:intergenic 40.0%
ACCAAAGAGAGATACCTTGT+CGG - chr2.4:60590119-60590138 None:intergenic 40.0%
ACTGCTGGTCAGAATATGAA+TGG + chr2.4:60589813-60589832 MS.gene003246:CDS 40.0%
AGCAGATACTTTGTTGGAGA+AGG - chr2.4:60589039-60589058 None:intergenic 40.0%
CAACTTACCATCTTCTATGC+GGG + chr2.4:60590064-60590083 MS.gene003246:CDS 40.0%
CATTACCCCTCAATTTGAAG+GGG - chr2.4:60591110-60591129 None:intergenic 40.0%
CCAACTTACCATCTTCTATG+CGG + chr2.4:60590063-60590082 MS.gene003246:CDS 40.0%
CGCATAGAAGATGGTAAGTT+GGG - chr2.4:60590065-60590084 None:intergenic 40.0%
CTCATGAATGTTTGCATGCA+TGG - chr2.4:60588367-60588386 None:intergenic 40.0%
CTCATTACCCCTCAATTTGA+AGG - chr2.4:60591112-60591131 None:intergenic 40.0%
CTTCAAATTGAGGGGTAATG+AGG + chr2.4:60591110-60591129 MS.gene003246:intron 40.0%
GCAGATACTTTGTTGGAGAA+GGG - chr2.4:60589038-60589057 None:intergenic 40.0%
GCCACAATTAAGCTTGACTA+TGG - chr2.4:60590437-60590456 None:intergenic 40.0%
GGGATCAGATAAGATCTTTG+TGG - chr2.4:60589102-60589121 None:intergenic 40.0%
GTATGTGTAGGCTTCACAAA+AGG + chr2.4:60588996-60589015 MS.gene003246:intron 40.0%
TCTGATCCCATAATATCTGC+TGG + chr2.4:60589113-60589132 MS.gene003246:CDS 40.0%
TGCATGATCCATCATCATCA+TGG - chr2.4:60588219-60588238 None:intergenic 40.0%
TGGTTGAGCAGATACTTTGT+TGG - chr2.4:60589045-60589064 None:intergenic 40.0%
TGTAGGCTTCACAAAAGGTT+CGG + chr2.4:60589001-60589020 MS.gene003246:intron 40.0%
TTACTAGAGTCAAATGCGTC+TGG - chr2.4:60589149-60589168 None:intergenic 40.0%
TTTGTGCCCCTTCAAATTGA+GGG + chr2.4:60591101-60591120 MS.gene003246:intron 40.0%
! AAGATGGTAAGTTGGGAAGA+AGG - chr2.4:60590058-60590077 None:intergenic 40.0%
! AATTGTGGCACTGTTTCTTC+AGG + chr2.4:60590448-60590467 MS.gene003246:intron 40.0%
! CTTTTATGCAGCTATACCTC+AGG + chr2.4:60590945-60590964 MS.gene003246:intron 40.0%
! TGTGTTGATGGATGCTTTGT+GGG + chr2.4:60588974-60588993 MS.gene003246:intron 40.0%
! TTGTGTTGATGGATGCTTTG+TGG + chr2.4:60588973-60588992 MS.gene003246:intron 40.0%
! TTTTGTGCCCCTTCAAATTG+AGG + chr2.4:60591100-60591119 MS.gene003246:intron 40.0%
!! AGTGGGGAATTAACTTGTTC+TGG + chr2.4:60588949-60588968 MS.gene003246:intron 40.0%
!! ATGGCATCGATTACTTTAGG+AGG - chr2.4:60590728-60590747 None:intergenic 40.0%
!! TCTTTCAATCATGATGGGCA+AGG + chr2.4:60589672-60589691 MS.gene003246:CDS 40.0%
!! TTTTAGAAAAGCGCAAGGAG+AGG + chr2.4:60590992-60591011 MS.gene003246:CDS 40.0%
AAAGGGTAGCATCAAACCTG+AGG - chr2.4:60589191-60589210 None:intergenic 45.0%
AAAGGGTTGCCCTTAAGTCT+AGG - chr2.4:60591064-60591083 None:intergenic 45.0%
AATCGATGCCATTACCATGC+TGG + chr2.4:60590736-60590755 MS.gene003246:CDS 45.0%
ATGGGGAAAAAACGGTTGAG+AGG + chr2.4:60590303-60590322 MS.gene003246:intron 45.0%
CAATCAATAGAGGGAAGGGA+AGG - chr2.4:60589633-60589652 None:intergenic 45.0%
CACTCGGACCAATGTAATGT+TGG - chr2.4:60590232-60590251 None:intergenic 45.0%
CATAGCACAGACAGAACTTC+AGG + chr2.4:60590520-60590539 MS.gene003246:CDS 45.0%
CATTGGTCCGAGTGAAAAAC+TGG + chr2.4:60590238-60590257 MS.gene003246:intron 45.0%
CCGCATAGAAGATGGTAAGT+TGG - chr2.4:60590066-60590085 None:intergenic 45.0%
CGATTCAGTCATTCCAGCAA+CGG - chr2.4:60589913-60589932 None:intergenic 45.0%
GAATCCGAGACCTAGCTTAA+GGG - chr2.4:60590272-60590291 None:intergenic 45.0%
GATGCTTTGTGGGTATGTGT+AGG + chr2.4:60588984-60589003 MS.gene003246:intron 45.0%
GATGGATCATGCAAACACTC+TGG + chr2.4:60588226-60588245 MS.gene003246:CDS 45.0%
GTAGGCTTCACAAAAGGTTC+GGG + chr2.4:60589002-60589021 MS.gene003246:intron 45.0%
TATAGGACTTGGATGACCAG+AGG - chr2.4:60590594-60590613 None:intergenic 45.0%
TCCGAGTGAAAAACTGGACT+CGG + chr2.4:60590244-60590263 MS.gene003246:intron 45.0%
TGAATCCGAGACCTAGCTTA+AGG - chr2.4:60590273-60590292 None:intergenic 45.0%
TTGTGCCCCTTCAAATTGAG+GGG + chr2.4:60591102-60591121 MS.gene003246:intron 45.0%
! AAGCTATCCTGTTGTTGGCT+AGG + chr2.4:60590474-60590493 MS.gene003246:CDS 45.0%
! AGACTAGTCATCGGCAAAGT+CGG + chr2.4:60590366-60590385 MS.gene003246:intron 45.0%
! ATCCTGTTGTTGGCTAGGAA+TGG + chr2.4:60590479-60590498 MS.gene003246:CDS 45.0%
! ATCGATTACTTTAGGAGGCC+CGG - chr2.4:60590723-60590742 None:intergenic 45.0%
! TCCGAGTCCAGTTTTTCACT+CGG - chr2.4:60590248-60590267 None:intergenic 45.0%
! TGCATTTGCAGGTTGACTCA+CGG - chr2.4:60590564-60590583 None:intergenic 45.0%
!! CTTGTTCTGGCTTGTGTTGA+TGG + chr2.4:60588962-60588981 MS.gene003246:intron 45.0%
!! GTTGGTGATCAAGGTCAAGT+TGG - chr2.4:60590214-60590233 None:intergenic 45.0%
!! TTCAATCATGATGGGCAAGG+CGG + chr2.4:60589675-60589694 MS.gene003246:CDS 45.0%
AAAGCCTAAACAGCGCGGAA+AGG - chr2.4:60589209-60589228 None:intergenic 50.0%
AAGAGAGATACCTTGTCGGC+AGG - chr2.4:60590115-60590134 None:intergenic 50.0%
AAGCCTAAACAGCGCGGAAA+GGG - chr2.4:60589208-60589227 None:intergenic 50.0%
AATATGAAGCCGCCACTGCT+TGG + chr2.4:60589840-60589859 MS.gene003246:CDS 50.0%
ACCACTCCTGTTAGCAATGC+CGG + chr2.4:60590701-60590720 MS.gene003246:CDS 50.0%
AGAGAGATACCTTGTCGGCA+GGG - chr2.4:60590114-60590133 None:intergenic 50.0%
AGTTGGGAAGAAGGCAGAGA+TGG - chr2.4:60590049-60590068 None:intergenic 50.0%
ATATGAAGCCGCCACTGCTT+GGG + chr2.4:60589841-60589860 MS.gene003246:CDS 50.0%
ATGCAGCTATACCTCAGGCT+CGG + chr2.4:60590950-60590969 MS.gene003246:intron 50.0%
CAAAATACCTGACGCCAGCA+TGG - chr2.4:60590753-60590772 None:intergenic 50.0%
CAATCACCTGTTCCCACCAT+TGG + chr2.4:60589885-60589904 MS.gene003246:CDS 50.0%
CCTCGTGGATGGGGAAAAAA+CGG + chr2.4:60590295-60590314 MS.gene003246:intron 50.0%
GACAGTACCCGCATAGAAGA+TGG - chr2.4:60590074-60590093 None:intergenic 50.0%
GCATTGCTAACAGGAGTGGT+GGG - chr2.4:60590701-60590720 None:intergenic 50.0%
GGATCCCTTAAGCTAGGTCT+CGG + chr2.4:60590265-60590284 MS.gene003246:intron 50.0%
GGCACAAGCTATCCTGTTGT+TGG + chr2.4:60590469-60590488 MS.gene003246:intron 50.0%
GGTGGATCGCACCAATAACT+TGG + chr2.4:60590387-60590406 MS.gene003246:intron 50.0%
GGTTGCCCTTAAGTCTAGGA+TGG - chr2.4:60591060-60591079 None:intergenic 50.0%
! ATGGTGGGAACAGGTGATTG+AGG - chr2.4:60589885-60589904 None:intergenic 50.0%
! CATGCTGGCGTCAGGTATTT+TGG + chr2.4:60590751-60590770 MS.gene003246:intron 50.0%
! CCCGAACAGAGACTAGTCAT+CGG + chr2.4:60590357-60590376 MS.gene003246:intron 50.0%
! CGTTGATGAACTCATTCCCG+AGG + chr2.4:60589778-60589797 MS.gene003246:CDS 50.0%
! GCATTTGCAGGTTGACTCAC+GGG - chr2.4:60590563-60590582 None:intergenic 50.0%
! GCCGACAAGGTATCTCTCTT+TGG + chr2.4:60590115-60590134 MS.gene003246:intron 50.0%
!! CCGATGACTAGTCTCTGTTC+GGG - chr2.4:60590360-60590379 None:intergenic 50.0%
!! GCCGATGACTAGTCTCTGTT+CGG - chr2.4:60590361-60590380 None:intergenic 50.0%
!! GGTGATTGAGGTGCTGTAAC+AGG - chr2.4:60589873-60589892 None:intergenic 50.0%
AAGGATGCTTTCCGAGCCTG+AGG - chr2.4:60590964-60590983 None:intergenic 55.0%
ACACTCGCTACGCGCATGTT+TGG - chr2.4:60588608-60588627 None:intergenic 55.0%
ACAGGTATTCCCCCAAGCAG+TGG - chr2.4:60589855-60589874 None:intergenic 55.0%
ACATGCGCGTAGCGAGTGTT+TGG + chr2.4:60588609-60588628 MS.gene003246:intron 55.0%
ACCTGACGCCAGCATGGTAA+TGG - chr2.4:60590747-60590766 None:intergenic 55.0%
ACTCTCTGCTGCTGAACCTC+AGG + chr2.4:60589172-60589191 MS.gene003246:CDS 55.0%
AGGACTTGGATGACCAGAGG+AGG - chr2.4:60590591-60590610 None:intergenic 55.0%
CAAAAGGTTCGGGTGCACAG+TGG + chr2.4:60589012-60589031 MS.gene003246:CDS 55.0%
CAATGACATCCCTGCCGACA+AGG + chr2.4:60590102-60590121 MS.gene003246:CDS 55.0%
CAGACAGAACTTCAGGCACC+TGG + chr2.4:60590527-60590546 MS.gene003246:CDS 55.0%
CATTCCAGCAACGGCACCAA+TGG - chr2.4:60589904-60589923 None:intergenic 55.0%
CCACTCCTGTTAGCAATGCC+GGG + chr2.4:60590702-60590721 MS.gene003246:CDS 55.0%
CGCCATTCCTAGCCAACAAC+AGG - chr2.4:60590484-60590503 None:intergenic 55.0%
CGGATTCAAGCCTCGTGGAT+GGG + chr2.4:60590285-60590304 MS.gene003246:intron 55.0%
CTACCCTTTCCGCGCTGTTT+AGG + chr2.4:60589202-60589221 MS.gene003246:intron 55.0%
CTAGTCATCGGCAAAGTCGG+TGG + chr2.4:60590369-60590388 MS.gene003246:intron 55.0%
CTAGTCTCTGTTCGGGAGCA+TGG - chr2.4:60590353-60590372 None:intergenic 55.0%
GAACTTCAGGCACCTGGTGA+CGG + chr2.4:60590533-60590552 MS.gene003246:CDS 55.0%
GGACTCGGATCCCTTAAGCT+AGG + chr2.4:60590259-60590278 MS.gene003246:intron 55.0%
GGACTTGGATGACCAGAGGA+GGG - chr2.4:60590590-60590609 None:intergenic 55.0%
GGATTCAAGCCTCGTGGATG+GGG + chr2.4:60590286-60590305 MS.gene003246:intron 55.0%
GGCATTGCTAACAGGAGTGG+TGG - chr2.4:60590702-60590721 None:intergenic 55.0%
GGCTAGGAATGGCGTATCAG+TGG + chr2.4:60590490-60590509 MS.gene003246:CDS 55.0%
TATGAAGCCGCCACTGCTTG+GGG + chr2.4:60589842-60589861 MS.gene003246:CDS 55.0%
TCGCATACTGGTGCACAGTC+AGG + chr2.4:60590623-60590642 MS.gene003246:CDS 55.0%
TCGGATTCAAGCCTCGTGGA+TGG + chr2.4:60590284-60590303 MS.gene003246:intron 55.0%
!!! CCGTTTTTTCCCCATCCACG+AGG - chr2.4:60590298-60590317 None:intergenic 55.0%
ACTGGTGCACAGTCAGGCAG+TGG + chr2.4:60590629-60590648 MS.gene003246:CDS 60.0%
AGGATACACCCCGCTGAAGG+TGG + chr2.4:60590323-60590342 MS.gene003246:intron 60.0%
ATGAAGCCGCCACTGCTTGG+GGG + chr2.4:60589843-60589862 MS.gene003246:CDS 60.0%
ATGGCTGACCACCTTCAGCG+GGG - chr2.4:60590334-60590353 None:intergenic 60.0%
CATGGCTGACCACCTTCAGC+GGG - chr2.4:60590335-60590354 None:intergenic 60.0%
CCAGCAACGGCACCAATGGT+GGG - chr2.4:60589900-60589919 None:intergenic 60.0%
CCCGGCATTGCTAACAGGAG+TGG - chr2.4:60590705-60590724 None:intergenic 60.0%
CTTGGATGACCAGAGGAGGG+TGG - chr2.4:60590587-60590606 None:intergenic 60.0%
GAGAGGATACACCCCGCTGA+AGG + chr2.4:60590320-60590339 MS.gene003246:intron 60.0%
GAGGAGGGTGGTGCATTTGC+AGG - chr2.4:60590575-60590594 None:intergenic 60.0%
GCAAATGCACCACCCTCCTC+TGG + chr2.4:60590575-60590594 MS.gene003246:CDS 60.0%
GCATGGCTGACCACCTTCAG+CGG - chr2.4:60590336-60590355 None:intergenic 60.0%
GCCATTACCATGCTGGCGTC+AGG + chr2.4:60590743-60590762 MS.gene003246:CDS 60.0%
GGTATTCCCCCAAGCAGTGG+CGG - chr2.4:60589852-60589871 None:intergenic 60.0%
GGTCTCGGATTCAAGCCTCG+TGG + chr2.4:60590280-60590299 MS.gene003246:intron 60.0%
TCCAGCAACGGCACCAATGG+TGG - chr2.4:60589901-60589920 None:intergenic 60.0%
! ACGGCACCAATGGTGGGAAC+AGG - chr2.4:60589894-60589913 None:intergenic 60.0%
GGAGGCCCGGCATTGCTAAC+AGG - chr2.4:60590710-60590729 None:intergenic 65.0%
!! CCCACCATTGGTGCCGTTGC+TGG + chr2.4:60589897-60589916 MS.gene003246:CDS 65.0%
CTCACGGGCACACCGTCACC+AGG - chr2.4:60590548-60590567 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 60588188 60591279 60588188 ID=MS.gene003246
chr2.4 mRNA 60588188 60591279 60588188 ID=MS.gene003246.t1;Parent=MS.gene003246
chr2.4 exon 60588188 60588251 60588188 ID=MS.gene003246.t1.exon1;Parent=MS.gene003246.t1
chr2.4 CDS 60588188 60588251 60588188 ID=cds.MS.gene003246.t1;Parent=MS.gene003246.t1
chr2.4 exon 60589006 60589193 60589006 ID=MS.gene003246.t1.exon2;Parent=MS.gene003246.t1
chr2.4 CDS 60589006 60589193 60589006 ID=cds.MS.gene003246.t1;Parent=MS.gene003246.t1
chr2.4 exon 60589669 60589934 60589669 ID=MS.gene003246.t1.exon3;Parent=MS.gene003246.t1
chr2.4 CDS 60589669 60589934 60589669 ID=cds.MS.gene003246.t1;Parent=MS.gene003246.t1
chr2.4 exon 60590036 60590123 60590036 ID=MS.gene003246.t1.exon4;Parent=MS.gene003246.t1
chr2.4 CDS 60590036 60590123 60590036 ID=cds.MS.gene003246.t1;Parent=MS.gene003246.t1
chr2.4 exon 60590470 60590764 60590470 ID=MS.gene003246.t1.exon5;Parent=MS.gene003246.t1
chr2.4 CDS 60590470 60590764 60590470 ID=cds.MS.gene003246.t1;Parent=MS.gene003246.t1
chr2.4 exon 60590956 60591013 60590956 ID=MS.gene003246.t1.exon6;Parent=MS.gene003246.t1
chr2.4 CDS 60590956 60591013 60590956 ID=cds.MS.gene003246.t1;Parent=MS.gene003246.t1
chr2.4 exon 60591219 60591279 60591219 ID=MS.gene003246.t1.exon7;Parent=MS.gene003246.t1
chr2.4 CDS 60591219 60591279 60591219 ID=cds.MS.gene003246.t1;Parent=MS.gene003246.t1
Gene Sequence

>MS.gene003246

ATGTTACTGCTAAGGAGGAGGAAATCAACCATGATGATGATGGATCATGCAAACACTCTGGCAAGTACTTTCCAATCATGTTTGGATAACCGTTTTTTGTTTCTATCTTTCTATGTAGTACGTAGCAGCATGCAACTTCTTTGATTTGTTTGGTTAACGGTTTCTTGTTTAAAGTACCATGCATGCAAACATTCATGAGTGTTTAATTTGATTGGTGGAACTAAGTAAGTTTTGTGTCTTGTATATTTAAAGTAGTATGTATGTGTGTTAAATTTGTGATTCCGGGAAAAATTTGTTGTCAACTTTTTACCAATTTTGTTTATTTTATGAAGAGATTCTTGTATAAGATATTCATTAAGTTACACTTTAAAACTTGAATAACGTGCCACCTAATTTTGTCAAACTGATCGGGTGATTCCAAACATGCGCGTAGCGAGTGTTTGGTTATACCCTTACAAAAGTTGAATTTGAATAAGTTGACTTTGTAAAATTGATTTTGATTAGAAGTGACTTGAATGTAAAGTGACATATGTCTCATATAAAAGTGGATTGAACGATAAATAAAGGTTAAAATCAATTGTAGGAGTCAAAAGTTACAAATTCTAGCTTGAAGTTGAATCAATTCTAGAAACAAAATCAATCATATCGTAAAGATCCGAACATTTCAAAATCAATTCTATATCTAGAATCAAATTTGACTTCTCCAAAAGTGAAACTAATCATATCAAATTTTTTAAATCTATTTTTATCCCTTAAAGTTTAGTGGGGAATTAACTTGTTCTGGCTTGTGTTGATGGATGCTTTGTGGGTATGTGTAGGCTTCACAAAAGGTTCGGGTGCACAGTGGCCCTTCTCCAACAAAGTATCTGCTCAACCACATTTGATGTCTTTTGAGGTTTCTCAAGATGATACCACAAAGATCTTATCTGATCCCATAATATCTGCTGGTTTTATGACTCCAGACGCATTTGACTCTAGTAAAAAACTCTCTGCTGCTGAACCTCAGGTTTGATGCTACCCTTTCCGCGCTGTTTAGGCTTTAAATTTTGATACAACATCACTGTAATTCTTTTTACATAGTTACACTGTCAACATATCACAATCAATCATACGTAATTTTTGAAGAAATTATGATTAAAGTCAAAAGTTTTTAATGATCGACGATTATGACGGATTGACAGTGTGACTTTTTTTACATTGACGGTGTCTATGGATTAAATCGTTAACTTAAAGTAAAATAAGGAATATTAGCTTATGAACAAGTAACATTTGGATGATCCAGTGTGTTCTAATCTGATTAGTATTCTAATTTTAAGTCAACTTCGTAGTATATCAATCAAATCCTCAAATTAAAATAAAATAAGTACTAGTTGTTTTGCAATATCTCATATCTTAACATACAAGATCTTACATTCAATACGTATCAGCTGACGTGTTTTTGCCCTTCCCTTCCCTCTATTGATTGTTTGTTATTACTATAGAAATCTTTCAATCATGATGGGCAAGGCGGCTTTAATTTTTCACGTACTCAGTATCCTGTACAACATGATGTGAAGATGTTTTCACTTTCCAATCAAACGAATTCAGTTTCGTTGATGAACTCATTCCCGAGGAATCATTTTGTAACTGCTGGTCAGAATATGAATGGTAAAAATATGAAGCCGCCACTGCTTGGGGGAATACCTGTTACAGCACCTCAATCACCTGTTCCCACCATTGGTGCCGTTGCTGGAATGACTGAATCGTAGTAATTTTACTTATTCTAATTTTATGATTGACTTTTAGGTGTACAGTGAACAAACTTGTTTGTATTTTGTTTCTCTAATAATTGATTTTATTTTGAAATAGCAATGTGAAACCATCTCTGCCTTCTTCCCAACTTACCATCTTCTATGCGGGTACTGTCAATGTCTTCAATGACATCCCTGCCGACAAGGTATCTCTCTTTGGTTATATTCCTTCTGCCTATAAATAAATAAATGAATACAAGGTATAAAGGCCACAATTCATATTTTATTTCTTGCCAACTTGACCTTGATCACCAACATTACATTGGTCCGAGTGAAAAACTGGACTCGGATCCCTTAAGCTAGGTCTCGGATTCAAGCCTCGTGGATGGGGAAAAAACGGTTGAGAGGATACACCCCGCTGAAGGTGGTCAGCCATGCTCCCGAACAGAGACTAGTCATCGGCAAAGTCGGTGGATCGCACCAATAACTTGGTTAACGCAAAAAACTTGGCCTTTACCATAGTCAAGCTTAATTGTGGCACTGTTTCTTCAGGCACAAGCTATCCTGTTGTTGGCTAGGAATGGCGTATCAGTGGCTTCTAACATAGCACAGACAGAACTTCAGGCACCTGGTGACGGTGTGCCCGTGAGTCAACCTGCAAATGCACCACCCTCCTCTGGTCATCCAAGTCCTATATCTATTTCATCGCATACTGGTGCACAGTCAGGCAGTGGCTCAACTAGCACTGATGAATTTCTCGCAGTTAAAACAACTGGTGTTCCCACCACTCCTGTTAGCAATGCCGGGCCTCCTAAAGTAATCGATGCCATTACCATGCTGGCGTCAGGTATTTTGGCAGTACCATTTCTCATTATTGCAGTTAGATTATTTTGTTTAGTGAAATATTTGGTGATATTTGTCTACATTTTACACATTGAAGAGAAACAAATCCATTTGCAGTATTGAGTTATTAATGTATTCAATTCAATCATTACAAACGTTTCTATTTAATAATTTCACTACCAATCTTTTATGCAGCTATACCTCAGGCTCGGAAAGCATCCTTGACTCGATTTTTAGAAAAGCGCAAGGAGAGGTTAGTATTGATGCCTTTTCTTGATAAAAGTAAAACATAGTTACCATCCTAGACTTAAGGGCAACCCTTTCTACACAAATTACTTTTTTTGTGCCCCTTCAAATTGAGGGGTAATGAGGATAATATGACTACGCTAATTTGACTGAAACTTAGCATTTAGTATTTTACATTACTTACCTCTTATCATTTAGTATTGTGTTTGCAGGGTGATGAATGCAGCACCATACAACCATAACAAGAAATCTGAAGAGTGTACTGCTTCATAA
Protein sequence

>MS.gene003246.t1

MLLLRRRKSTMMMMDHANTLASFTKGSGAQWPFSNKVSAQPHLMSFEVSQDDTTKILSDPIISAGFMTPDAFDSSKKLSAAEPQKSFNHDGQGGFNFSRTQYPVQHDVKMFSLSNQTNSVSLMNSFPRNHFVTAGQNMNGKNMKPPLLGGIPVTAPQSPVPTIGAVAGMTESYNVKPSLPSSQLTIFYAGTVNVFNDIPADKAQAILLLARNGVSVASNIAQTELQAPGDGVPVSQPANAPPSSGHPSPISISSHTGAQSGSGSTSTDEFLAVKTTGVPTTPVSNAGPPKVIDAITMLASAIPQARKASLTRFLEKRKERVMNAAPYNHNKKSEECTAS