AlfalfaGEDB | MS.gene00325

M. sativa cultivar XinJiangDaYe / MS.gene00325

KEGG: K15032
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00325.t1	XP_013463275.2	92.5	228	17	0	12	239	392	619	1.80E-116	428.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00325.t1	A0A072V641	93.6	171	11	0	69	239	1	171	1.4e-86	328.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene00325.t1	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00325.t1	MTR_2g437090	93.567	171	11	0	69	239	1	171	1.67e-115	327
MS.gene00325.t1	MTR_2g437020	63.025	238	87	1	1	238	146	382	1.09e-103	305
MS.gene00325.t1	MTR_2g437030	61.181	237	90	1	1	237	233	467	5.35e-99	296
MS.gene00325.t1	MTR_2g436440	61.277	235	89	1	1	235	153	385	7.95e-99	293
MS.gene00325.t1	MTR_2g437060	61.441	236	89	1	1	236	162	395	5.00e-98	291
MS.gene00325.t1	MTR_2g437080	58.824	238	96	1	1	238	147	382	6.94e-98	290
MS.gene00325.t1	MTR_2g436400	60.435	230	89	1	1	230	154	381	4.39e-93	278
MS.gene00325.t1	MTR_2g437040	55.932	236	102	1	1	236	147	380	2.73e-88	266
MS.gene00325.t1	MTR_4g119550	49.362	235	117	1	1	235	157	389	2.81e-78	241
MS.gene00325.t1	MTR_2g437120	52.743	237	106	3	1	234	158	391	4.89e-77	238

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00325.t1	AT5G07900	31.718	227	151	2	1	223	173	399	1.36e-32	122
MS.gene00325.t1	AT1G21150	24.779	226	164	3	1	221	124	348	4.27e-19	85.1
MS.gene00325.t1	AT1G21150	24.779	226	164	3	1	221	160	384	4.87e-19	85.5
MS.gene00325.t1	AT1G21150	24.779	226	164	3	1	221	224	448	8.06e-19	85.1
MS.gene00325.t1	AT5G64950	28.125	224	152	2	1	215	143	366	2.19e-15	75.1
MS.gene00325.t1	AT1G61980	25.248	202	111	5	60	223	216	415	1.95e-12	66.6
MS.gene00325.t1	AT1G61980	25.248	202	111	5	60	223	216	415	1.95e-12	66.6
MS.gene00325.t1	AT1G61980	25.248	202	111	5	60	223	216	415	1.95e-12	66.6

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Find 49 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGATGGATCTATAGCA+AGG	0.611721	2.1:+56251603	None:intergenic
AACTTCTCAGGCACTATAAA+TGG	0.258902	2.1:+56251482	None:intergenic
AAGTGATGGATCTATAGCAA+GGG	0.614469	2.1:+56251604	None:intergenic
AAGTTGACACCTTTAAGAAA+TGG	0.378023	2.1:-56251751	MS.gene00325:CDS
AATGGTACCAACCTATGAAT+TGG	0.430323	2.1:-56252068	MS.gene00325:CDS
AATTGCAGAACTGGGGCCCC+TGG	0.455387	2.1:+56251551	None:intergenic
ACACCTTTAAGAAATGGGGT+TGG	0.612652	2.1:-56251745	MS.gene00325:CDS
AGACATGCTGAAATTGCTGG+AGG	0.684530	2.1:-56251867	MS.gene00325:CDS
AGACCAACCCCATTTCTTAA+AGG	0.312139	2.1:+56251742	None:intergenic
AGCAATTTCAGCATGTCTCC+TGG	0.410103	2.1:+56251872	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAGTATAAACAAAACCCTA+TGG	-	chr2.1:56251656-56251675	MS.gene00325:CDS	30.0%
CAATCTTCTAATGTTTGAGT+CGG	+	chr2.1:56251512-56251531	None:intergenic	30.0%
GTCAACTTTATCTTTCCATA+GGG	+	chr2.1:56251674-56251693	None:intergenic	30.0%
GTTCACAATCGAAATTTCTT+TGG	-	chr2.1:56251436-56251455	MS.gene00325:CDS	30.0%
TGTCAACTTTATCTTTCCAT+AGG	+	chr2.1:56251675-56251694	None:intergenic	30.0%
TTATCAAGAAACAACTTCTC+AGG	+	chr2.1:56251970-56251989	None:intergenic	30.0%
AACTTCTCAGGCACTATAAA+TGG	+	chr2.1:56251958-56251977	None:intergenic	35.0%
ATGGATACTAACATACACTC+AGG	+	chr2.1:56251754-56251773	None:intergenic	35.0%
GAAATTGCTGGAGGAATTAA+AGG	-	chr2.1:56251579-56251598	MS.gene00325:CDS	35.0%
AGACCAACCCCATTTCTTAA+AGG	+	chr2.1:56251698-56251717	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	56251370	56252089	56251370	ID=MS.gene00325
chr2.1	mRNA	56251370	56252089	56251370	ID=MS.gene00325.t1;Parent=MS.gene00325
chr2.1	exon	56251370	56252089	56251370	ID=MS.gene00325.t1.exon1;Parent=MS.gene00325.t1
chr2.1	CDS	56251370	56252089	56251370	ID=cds.MS.gene00325.t1;Parent=MS.gene00325.t1

Gene Sequence

>MS.gene00325

ATGGTACCAACCTATGAATTGGCGTCTACATTCTTGAAATCTCCCCGGGACACCCTTGCTTGTGCAGTTCACAATCGAAATTTCTTTGGAGCCACGCGTGTGCCAAATAACATCAAGTTGTTGATCAAGAATGGAGTGTCCGACTCAAACATTAGAAGATTGCTTCGTAGCAGGAGTCCGATATTCTATTCAGGTCCAGGAGACATGCTGAAATTGCTGGAGGAATTAAAGGTTTTGGGTTTTAATCCTTCAAAAACATCTTTCCATCTAGCACTAATTGCCAAAGCAAGTATAAACAAAACCCTATGGAAAGATAAAGTTGACACCTTTAAGAAATGGGGTTGGTCTGAACAAGTTATTTTCGAAGCATTTAGAAGGCGGCCTGAGTGTATGTTAGTATCCATTAATAAATTAAATTTAGTGATGAATTTTTGGGTTAATGAGTTGGGTTGGGATGCTCTTGCCCTTGCTATAGATCCATCACTTTTTGCTATAAGTTTGGAAAAAAGGACCATTCCAGGGGCCCCAGTTCTGCAATTCCTGCTAAAGAAAGGTCTGCGAAAGAGGACTGCAAGCTTAACTTCTCCATTTATAGTGCCTGAGAAGTTGTTTCTTGATAAGTTTATAAAACGTTTTGAGAACGAGTCTTCTTATCTGTTAAAACTCTATGAAGAAAAACTCAACCTTGCATACACCATAGACAAAACTTGCACGCCATGA

Protein sequence

>MS.gene00325.t1

MVPTYELASTFLKSPRDTLACAVHNRNFFGATRVPNNIKLLIKNGVSDSNIRRLLRSRSPIFYSGPGDMLKLLEELKVLGFNPSKTSFHLALIAKASINKTLWKDKVDTFKKWGWSEQVIFEAFRRRPECMLVSINKLNLVMNFWVNELGWDALALAIDPSLFAISLEKRTIPGAPVLQFLLKKGLRKRTASLTSPFIVPEKLFLDKFIKRFENESSYLLKLYEEKLNLAYTIDKTCTP