Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003272.t1 | XP_013463003.1 | 94.3 | 683 | 39 | 0 | 1 | 683 | 1 | 683 | 0.00E+00 | 1143.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003272.t1 | A9LNK9 | 61.2 | 690 | 199 | 17 | 1 | 680 | 1 | 631 | 4.8e-184 | 646.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003272.t1 | A0A072V6R5 | 94.3 | 683 | 39 | 0 | 1 | 683 | 1 | 683 | 0.0e+00 | 1143.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene003272.t1 | TF | C3H |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003272.t1 | MTR_2g029540 | 97.365 | 683 | 18 | 0 | 1 | 683 | 1 | 683 | 0.0 | 1376 |
MS.gene003272.t1 | MTR_8g088390 | 25.294 | 170 | 117 | 2 | 231 | 394 | 393 | 558 | 1.66e-12 | 71.2 |
MS.gene003272.t1 | MTR_8g088390 | 25.294 | 170 | 117 | 2 | 231 | 394 | 328 | 493 | 1.81e-12 | 70.9 |
MS.gene003272.t1 | MTR_7g085500 | 29.710 | 138 | 91 | 2 | 259 | 394 | 432 | 565 | 3.06e-12 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003272.t1 | AT1G30460 | 61.426 | 687 | 202 | 16 | 1 | 680 | 1 | 631 | 0.0 | 667 |
MS.gene003272.t1 | AT1G30460 | 67.225 | 418 | 105 | 8 | 1 | 413 | 1 | 391 | 1.48e-179 | 516 |
MS.gene003272.t1 | AT1G30460 | 56.767 | 266 | 83 | 8 | 1 | 261 | 1 | 239 | 2.28e-75 | 243 |
MS.gene003272.t1 | AT4G11970 | 50.667 | 150 | 70 | 3 | 246 | 394 | 61 | 207 | 5.70e-35 | 136 |
MS.gene003272.t1 | AT4G11970 | 50.667 | 150 | 70 | 3 | 246 | 394 | 61 | 207 | 6.45e-35 | 137 |
MS.gene003272.t1 | AT4G11970 | 50.667 | 150 | 70 | 3 | 246 | 394 | 61 | 207 | 2.06e-34 | 135 |
MS.gene003272.t1 | AT4G11970 | 50.667 | 150 | 70 | 3 | 246 | 394 | 61 | 207 | 3.65e-33 | 133 |
MS.gene003272.t1 | AT4G11970 | 50.667 | 150 | 70 | 3 | 246 | 394 | 61 | 207 | 3.65e-33 | 133 |
MS.gene003272.t1 | AT4G11970 | 52.294 | 109 | 50 | 2 | 287 | 394 | 2 | 109 | 1.02e-22 | 99.4 |
MS.gene003272.t1 | AT4G11970 | 52.294 | 109 | 50 | 2 | 287 | 394 | 2 | 109 | 1.33e-22 | 98.2 |
MS.gene003272.t1 | AT1G55500 | 27.742 | 155 | 102 | 2 | 246 | 394 | 345 | 495 | 9.78e-13 | 71.6 |
MS.gene003272.t1 | AT1G55500 | 27.742 | 155 | 102 | 2 | 246 | 394 | 358 | 508 | 1.02e-12 | 71.6 |
MS.gene003272.t1 | AT1G55500 | 27.742 | 155 | 102 | 2 | 246 | 394 | 401 | 551 | 1.03e-12 | 71.6 |
MS.gene003272.t1 | AT1G55500 | 27.742 | 155 | 102 | 2 | 246 | 394 | 401 | 551 | 1.04e-12 | 71.6 |
MS.gene003272.t1 | AT1G55500 | 27.742 | 155 | 102 | 2 | 246 | 394 | 401 | 551 | 1.06e-12 | 71.6 |
MS.gene003272.t1 | AT1G55500 | 27.742 | 155 | 102 | 2 | 246 | 394 | 388 | 538 | 1.14e-12 | 71.6 |
MS.gene003272.t1 | AT1G27960 | 29.412 | 153 | 95 | 4 | 259 | 403 | 330 | 477 | 4.67e-12 | 69.7 |
MS.gene003272.t1 | AT1G27960 | 29.412 | 153 | 95 | 4 | 259 | 403 | 256 | 403 | 8.20e-12 | 68.6 |
MS.gene003272.t1 | AT5G61020 | 23.301 | 206 | 144 | 4 | 197 | 394 | 197 | 396 | 1.17e-11 | 68.2 |
MS.gene003272.t1 | AT5G61020 | 23.301 | 206 | 144 | 4 | 197 | 394 | 199 | 398 | 1.27e-11 | 68.2 |
MS.gene003272.t1 | AT3G13460 | 26.452 | 155 | 104 | 2 | 246 | 394 | 428 | 578 | 1.32e-11 | 68.2 |
MS.gene003272.t1 | AT3G13460 | 26.452 | 155 | 104 | 2 | 246 | 394 | 429 | 579 | 1.42e-11 | 68.2 |
MS.gene003272.t1 | AT3G13460 | 26.452 | 155 | 104 | 2 | 246 | 394 | 426 | 576 | 1.49e-11 | 68.2 |
Find 221 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTAGGTTCGGTGGTGATTT+TGG | 0.093023 | 2.4:-60185475 | MS.gene003272:CDS |
AGAATTGGTGGTTCTGTTGC+TGG | 0.242654 | 2.4:-60189257 | MS.gene003272:CDS |
ATGTTTCCCGGTGGTGGATT+TGG | 0.262536 | 2.4:-60185403 | MS.gene003272:CDS |
TGTTTCCCGGTGGTGGATTT+GGG | 0.276865 | 2.4:-60185402 | MS.gene003272:CDS |
GGCATGGGTCCCCGAGGTTT+TGG | 0.279783 | 2.4:-60185508 | MS.gene003272:CDS |
TCTTCTTCATTGTCTTCAAA+TGG | 0.286902 | 2.4:+60185757 | None:intergenic |
CGGGGTGGAGACGGCGGCGG+TGG | 0.296415 | 2.4:+60195354 | None:intergenic |
CCGTCGACCGGGAGCATTAC+CGG | 0.300595 | 2.4:+60195255 | None:intergenic |
CCTGGTGGACCCGATGGTTT+TGG | 0.305420 | 2.4:-60185547 | MS.gene003272:CDS |
TGTCTGTACAACAAGGAGTA+TGG | 0.310359 | 2.4:-60190650 | MS.gene003272:CDS |
TGATGTTCGATTGGCTTGAT+TGG | 0.314186 | 2.4:+60191739 | None:intergenic |
ACCGGTAAGTTCTCATTGTA+TGG | 0.319343 | 2.4:+60187738 | None:intergenic |
TGCTTCTGCAGGTACAAGTT+AGG | 0.323400 | 2.4:-60192088 | MS.gene003272:intron |
GCTCATGGAACGGCACATTA+TGG | 0.324684 | 2.4:-60189218 | MS.gene003272:CDS |
AAGCGAGAATGCCGATTTGC+CGG | 0.329584 | 2.4:-60195147 | MS.gene003272:CDS |
TCTTCAAATGGGACAATGTC+TGG | 0.338178 | 2.4:+60185769 | None:intergenic |
GGTGGAGACGGCGGCGGTGG+AGG | 0.346062 | 2.4:+60195357 | None:intergenic |
CTCCCGGTCGACGGAGCTTC+CGG | 0.349933 | 2.4:-60195246 | MS.gene003272:CDS |
AGCAACAGAACCACCAATTC+TGG | 0.361324 | 2.4:+60189259 | None:intergenic |
TTTCCTGACTCTGCAACTAA+TGG | 0.365592 | 2.4:+60191842 | None:intergenic |
CATTGTATGGATTTCTCAAA+TGG | 0.375064 | 2.4:+60187751 | None:intergenic |
TCAAACCCTGGGATGTTTCC+CGG | 0.378883 | 2.4:-60185415 | MS.gene003272:CDS |
GTTGAACTTGTTGCTGCTGC+TGG | 0.379641 | 2.4:+60191816 | None:intergenic |
GAATTGGTGGTTCTGTTGCT+GGG | 0.384527 | 2.4:-60189256 | MS.gene003272:CDS |
TGAGCCAGATAGTGAACTTA+TGG | 0.387028 | 2.4:-60186214 | MS.gene003272:intron |
TAGATATTCCTTGAGGTAAA+GGG | 0.389373 | 2.4:+60191714 | None:intergenic |
CAACCGTACTCGACATTTCC+AGG | 0.391792 | 2.4:-60190550 | MS.gene003272:intron |
TGTGGTGGAGGTGGAGGTGG+TGG | 0.398389 | 2.4:+60185277 | None:intergenic |
GCAAAATTTCAATCCTATGA+TGG | 0.399029 | 2.4:-60185590 | MS.gene003272:CDS |
CTACCACCTCTTGGTGCGTT+CGG | 0.404919 | 2.4:+60185325 | None:intergenic |
CTTCTTCATTGTCTTCAAAT+GGG | 0.407303 | 2.4:+60185758 | None:intergenic |
TATCGACAATCAGGCCCATT+AGG | 0.408920 | 2.4:+60192058 | None:intergenic |
ATGGGCCTGATTGTCGATAT+AGG | 0.411252 | 2.4:-60192054 | MS.gene003272:CDS |
CCTCTTGGTGCGTTCGGACC+TGG | 0.418017 | 2.4:+60185331 | None:intergenic |
CAAGGAAGAGGTAGGGGCAG+AGG | 0.419654 | 2.4:-60185673 | MS.gene003272:CDS |
CTAGATATTCCTTGAGGTAA+AGG | 0.426065 | 2.4:+60191713 | None:intergenic |
AAGGGAGTGAATCCAGATAA+TGG | 0.426746 | 2.4:-60185802 | MS.gene003272:CDS |
TGCCAACTGCTCACCGATAG+AGG | 0.426963 | 2.4:+60186251 | None:intergenic |
TTGCCGGAAGCTCCGTCGAC+CGG | 0.427292 | 2.4:+60195243 | None:intergenic |
GCATGCCTATATCGACAATC+AGG | 0.427943 | 2.4:+60192049 | None:intergenic |
TCTTGACTCTTACCCTGATC+TGG | 0.427989 | 2.4:+60185187 | None:intergenic |
GGTCCATATGGTCCTAGGTT+CGG | 0.430942 | 2.4:-60185487 | MS.gene003272:CDS |
GAGATCAAAGACCAAGTGAT+TGG | 0.433286 | 2.4:-60185231 | MS.gene003272:CDS |
CCTGGGATGTTTCCCGGTGG+TGG | 0.433343 | 2.4:-60185409 | MS.gene003272:CDS |
GGTGGAGGTGATTGCGGTGG+CGG | 0.434457 | 2.4:+60195372 | None:intergenic |
GATGAAGAGGAGGAGAGCTT+TGG | 0.434723 | 2.4:-60185718 | MS.gene003272:CDS |
GCAGATAAGTAGAGACTGTC+AGG | 0.436189 | 2.4:-60186283 | MS.gene003272:intron |
CTCGGAACATCATGCCAGCT+GGG | 0.436761 | 2.4:+60185446 | None:intergenic |
CATACCATAAGTTCACTATC+TGG | 0.440113 | 2.4:+60186210 | None:intergenic |
TATAGTTAGAACCCCTTTGT+TGG | 0.441127 | 2.4:+60191933 | None:intergenic |
CTACCTCTTCCTTGAACAGC+TGG | 0.443773 | 2.4:+60185682 | None:intergenic |
GTGATTGCGGTGGCGGCGGA+AGG | 0.444074 | 2.4:+60195379 | None:intergenic |
GACCAAGTGATTGGAATGAT+AGG | 0.445808 | 2.4:-60185222 | MS.gene003272:CDS |
GATGTTCGATTGGCTTGATT+GGG | 0.446033 | 2.4:+60191740 | None:intergenic |
CCTCGGAACATCATGCCAGC+TGG | 0.447772 | 2.4:+60185445 | None:intergenic |
TGGAATGATAGGTATAGTTC+AGG | 0.448457 | 2.4:-60185211 | MS.gene003272:CDS |
GATAATCCATCGCCCATCAT+AGG | 0.448656 | 2.4:+60185577 | None:intergenic |
TTTCTCTGTTAAGTGGTTGA+AGG | 0.452217 | 2.4:-60189189 | MS.gene003272:intron |
CAAGCGCAAAATCTTGCTAA+TGG | 0.455076 | 2.4:-60191767 | MS.gene003272:CDS |
TGAAGAACCTCTTCAATTGG+AGG | 0.457703 | 2.4:+60192007 | None:intergenic |
GGAGGTGATTGCGGTGGCGG+CGG | 0.459474 | 2.4:+60195375 | None:intergenic |
GTATAGTTCAGGACCAGATC+AGG | 0.461811 | 2.4:-60185200 | MS.gene003272:CDS |
GACGTAATTTCTCTGTTAAG+TGG | 0.464059 | 2.4:-60189196 | MS.gene003272:CDS |
GCTGTAGGGCCAGCTGTTCA+AGG | 0.464279 | 2.4:-60185691 | MS.gene003272:CDS |
GTATGGAGAATGTCGTGAAC+AGG | 0.464320 | 2.4:-60195113 | MS.gene003272:CDS |
TCACAAGTTTAACCAACAAA+GGG | 0.465473 | 2.4:-60191945 | MS.gene003272:CDS |
GATCGGGGTGGAGACGGCGG+CGG | 0.465703 | 2.4:+60195351 | None:intergenic |
CGAGGTCGACCCTCAAACCC+TGG | 0.466597 | 2.4:-60185427 | MS.gene003272:CDS |
CTTTACCTCAAGGAATATCT+AGG | 0.467981 | 2.4:-60191712 | MS.gene003272:intron |
CCACCACCGGGAAACATCCC+AGG | 0.469211 | 2.4:+60185409 | None:intergenic |
CCTCACATGCATCTTGGGCG+TGG | 0.469309 | 2.4:-60185634 | MS.gene003272:CDS |
AGACAATGAAGAAGAGGAAG+AGG | 0.471242 | 2.4:-60185749 | MS.gene003272:CDS |
TTGACTGGCCTACCACCTCT+TGG | 0.471572 | 2.4:+60185316 | None:intergenic |
CGGTGTGTCGTCACTGGCTA+AGG | 0.473431 | 2.4:-60195219 | MS.gene003272:CDS |
CGAGAAGAAGAGAAAGCAAA+GGG | 0.473546 | 2.4:-60185820 | MS.gene003272:CDS |
AAACCATTAGTTGCAGAGTC+AGG | 0.474307 | 2.4:-60191845 | MS.gene003272:CDS |
AGGAATCGGATTGGACGATC+GGG | 0.476823 | 2.4:+60195335 | None:intergenic |
AATTGTAAGAATATAAATGT+TGG | 0.477942 | 2.4:+60191978 | None:intergenic |
TCAATTGGAGGAGGAGGTCC+AGG | 0.478308 | 2.4:+60192019 | None:intergenic |
AGTGACGACACACCGTTTGC+CGG | 0.482207 | 2.4:+60195227 | None:intergenic |
TCCATACAATGAGAACTTAC+CGG | 0.482376 | 2.4:-60187739 | MS.gene003272:CDS |
AAGTAGAGACTGTCAGGAGC+TGG | 0.483040 | 2.4:-60186277 | MS.gene003272:CDS |
ACCTCTTCAATTGGAGGAGG+AGG | 0.484094 | 2.4:+60192013 | None:intergenic |
CCCATAAAAGGACCGCGTCC+AGG | 0.488496 | 2.4:+60185367 | None:intergenic |
GGGAAACATCCCAGGGTTTG+AGG | 0.491155 | 2.4:+60185417 | None:intergenic |
AGTCGCGGTTGCTGCTCCAT+TGG | 0.498337 | 2.4:+60195300 | None:intergenic |
TGATACTGCATGTCATCATC+AGG | 0.498554 | 2.4:+60185142 | None:intergenic |
TTAGTTGCAGAGTCAGGAAA+TGG | 0.499921 | 2.4:-60191839 | MS.gene003272:CDS |
GGAAACATCCCAGGGTTTGA+GGG | 0.500927 | 2.4:+60185418 | None:intergenic |
TCGACGGAGCTTCCGGCAAA+CGG | 0.501734 | 2.4:-60195239 | MS.gene003272:CDS |
TTCAATCCTATGATGGGCGA+TGG | 0.502201 | 2.4:-60185583 | MS.gene003272:CDS |
GAGTTGCAATCGTGAAAACT+TGG | 0.502415 | 2.4:-60190676 | MS.gene003272:CDS |
GGCAAACGGTGTGTCGTCAC+TGG | 0.503851 | 2.4:-60195225 | MS.gene003272:CDS |
CAAAATTTCAATCCTATGAT+GGG | 0.506097 | 2.4:-60185589 | MS.gene003272:CDS |
GGGCCAGCTGTTCAAGGAAG+AGG | 0.506255 | 2.4:-60185685 | MS.gene003272:CDS |
CCACCGAACCTAGGACCATA+TGG | 0.506705 | 2.4:+60185484 | None:intergenic |
TTGGACGATCGGGGTGGAGA+CGG | 0.508352 | 2.4:+60195345 | None:intergenic |
AGTCCTCAACTTCGATTTCG+AGG | 0.508501 | 2.4:-60195419 | MS.gene003272:CDS |
GCATACTAATGATGATATCA+AGG | 0.514229 | 2.4:-60195077 | MS.gene003272:CDS |
GAGAGCTTTGGTCAAGCTGT+AGG | 0.516424 | 2.4:-60185706 | MS.gene003272:CDS |
AGAGGAAGAAAGTGATGAAG+AGG | 0.516977 | 2.4:-60185731 | MS.gene003272:CDS |
GGAAGGTGGTAAGTAGGAAT+CGG | 0.518366 | 2.4:+60195321 | None:intergenic |
GGAAGAGGTAGGGGCAGAGG+AGG | 0.518803 | 2.4:-60185670 | MS.gene003272:CDS |
CCGGTAATGCTCCCGGTCGA+CGG | 0.519022 | 2.4:-60195255 | MS.gene003272:CDS |
TAAAGGGGTTGATGTTCGAT+TGG | 0.521566 | 2.4:+60191730 | None:intergenic |
ACCATATGGACCAAAACCTC+GGG | 0.523745 | 2.4:+60185498 | None:intergenic |
TATAGGCATGCAAAATCTCC+TGG | 0.524122 | 2.4:-60192037 | MS.gene003272:CDS |
CTCAACTTCGATTTCGAGGG+CGG | 0.524533 | 2.4:-60195415 | MS.gene003272:CDS |
TAGGAATCGGATTGGACGAT+CGG | 0.525623 | 2.4:+60195334 | None:intergenic |
TGCCGGAAGCTCCGTCGACC+GGG | 0.526302 | 2.4:+60195244 | None:intergenic |
GCGGTTGCTGCTCCATTGGA+AGG | 0.529814 | 2.4:+60195304 | None:intergenic |
GGAAAAGATAATACCTTCAC+CGG | 0.531864 | 2.4:+60187720 | None:intergenic |
ATCTGGCATACCAAAACCAT+CGG | 0.531939 | 2.4:+60185537 | None:intergenic |
GCAAAGATGACATCCAGAAT+TGG | 0.534997 | 2.4:-60189272 | MS.gene003272:CDS |
CGTCGACCGGGAGCATTACC+GGG | 0.535042 | 2.4:+60195256 | None:intergenic |
ACGAGAAGAAGAGAAAGCAA+AGG | 0.536291 | 2.4:-60185821 | MS.gene003272:CDS |
CTCACAAGTTTAACCAACAA+AGG | 0.536291 | 2.4:-60191946 | MS.gene003272:CDS |
TCTGTTGCTGAACATACTCC+CGG | 0.537402 | 2.4:-60195274 | MS.gene003272:CDS |
TCTGCAAACCAAGGTGCGGT+TGG | 0.537410 | 2.4:-60191869 | MS.gene003272:CDS |
AATTGGTGGTTCTGTTGCTG+GGG | 0.537847 | 2.4:-60189255 | MS.gene003272:CDS |
TTCGATTGGCTTGATTGGGA+TGG | 0.537953 | 2.4:+60191744 | None:intergenic |
GCTGTTCAAGGAAGAGGTAG+GGG | 0.539653 | 2.4:-60185679 | MS.gene003272:CDS |
GTCTGTACAACAAGGAGTAT+GGG | 0.539886 | 2.4:-60190649 | MS.gene003272:CDS |
CCAAAACCATCGGGTCCACC+AGG | 0.541684 | 2.4:+60185547 | None:intergenic |
CAGCTGTTCAAGGAAGAGGT+AGG | 0.542218 | 2.4:-60185681 | MS.gene003272:CDS |
GGAAGAAAGTGATGAAGAGG+AGG | 0.544461 | 2.4:-60185728 | MS.gene003272:CDS |
ATCGAAGTTGAGGACTCCTT+CGG | 0.545071 | 2.4:+60195426 | None:intergenic |
CCAAAATCACCACCGAACCT+AGG | 0.547709 | 2.4:+60185475 | None:intergenic |
ATTTGAAGACAATGAAGAAG+AGG | 0.549441 | 2.4:-60185755 | MS.gene003272:CDS |
TACGGACCTGGTGGACCCGA+TGG | 0.551614 | 2.4:-60185553 | MS.gene003272:CDS |
TCCTACTTACCACCTTCCAA+TGG | 0.551728 | 2.4:-60195316 | MS.gene003272:CDS |
TTTGGGATGATGATGAATCC+TGG | 0.551843 | 2.4:-60185385 | MS.gene003272:CDS |
TCCATTGGAAGGTGGTAAGT+AGG | 0.552621 | 2.4:+60195315 | None:intergenic |
ACCCTCTATCGGTGAGCAGT+TGG | 0.555558 | 2.4:-60186253 | MS.gene003272:CDS |
TCTCCGTGTCTTGACCGCCT+AGG | 0.556999 | 2.4:+60185055 | None:intergenic |
CATCATCCCAAATCCACCAC+CGG | 0.557200 | 2.4:+60185396 | None:intergenic |
TACCTATCATTCCAATCACT+TGG | 0.558574 | 2.4:+60185220 | None:intergenic |
GAAAAGTCTCAGTTTCCTCA+AGG | 0.558709 | 2.4:-60191899 | MS.gene003272:CDS |
AGCTGTTCAAGGAAGAGGTA+GGG | 0.558892 | 2.4:-60185680 | MS.gene003272:CDS |
CACGCCCAAGATGCATGTGA+GGG | 0.559255 | 2.4:+60185635 | None:intergenic |
CAATGAGAACTTACCGGTGA+AGG | 0.559575 | 2.4:-60187733 | MS.gene003272:intron |
GGCGGCGGTGGAGGTGATTG+CGG | 0.560014 | 2.4:+60195366 | None:intergenic |
AAGACATGCTCAGTCAAAGT+GGG | 0.562941 | 2.4:-60185168 | MS.gene003272:CDS |
GGAAACTGGAAATATGCTCA+TGG | 0.564153 | 2.4:-60189233 | MS.gene003272:CDS |
CAGGAGCTGGAACCCTCTAT+CGG | 0.564912 | 2.4:-60186264 | MS.gene003272:CDS |
GTGGTAAGTAGGAATCGGAT+TGG | 0.569036 | 2.4:+60195326 | None:intergenic |
GGTGGAGGTGGTGGAAACAT+CGG | 0.569998 | 2.4:+60185286 | None:intergenic |
CCACAAAATATGAACCGCAC+TGG | 0.571385 | 2.4:-60185259 | MS.gene003272:CDS |
AACATCGGAGGCATATTGAC+TGG | 0.571438 | 2.4:+60185301 | None:intergenic |
GACCATATGGACCAAAACCT+CGG | 0.572478 | 2.4:+60185497 | None:intergenic |
AGAGCTTTGGTCAAGCTGTA+GGG | 0.574219 | 2.4:-60185705 | MS.gene003272:CDS |
AAGGAGTATGGGCAACTCAA+AGG | 0.574768 | 2.4:-60190638 | MS.gene003272:CDS |
CCACGCCCAAGATGCATGTG+AGG | 0.577024 | 2.4:+60185634 | None:intergenic |
GTCCTCAACTTCGATTTCGA+GGG | 0.578584 | 2.4:-60195418 | MS.gene003272:CDS |
ATACCTGGAAATGTCGAGTA+CGG | 0.579334 | 2.4:+60190547 | None:intergenic |
AGAACCTCTTCAATTGGAGG+AGG | 0.582530 | 2.4:+60192010 | None:intergenic |
CATACTCCCGGTAATGCTCC+CGG | 0.583758 | 2.4:-60195262 | MS.gene003272:CDS |
TCGGAACATCATGCCAGCTG+GGG | 0.587325 | 2.4:+60185447 | None:intergenic |
TTTGCAGAATTAATTCCTTG+AGG | 0.587634 | 2.4:+60191884 | None:intergenic |
CAAGACATGCTCAGTCAAAG+TGG | 0.589412 | 2.4:-60185169 | MS.gene003272:CDS |
GCACCTAGGCGGTCAAGACA+CGG | 0.591297 | 2.4:-60185058 | MS.gene003272:CDS |
CGTGGAGCAAGACCGATCCA+TGG | 0.593454 | 2.4:-60185616 | MS.gene003272:CDS |
GACGATCGGGGTGGAGACGG+CGG | 0.596912 | 2.4:+60195348 | None:intergenic |
TCTGGCATACCAAAACCATC+GGG | 0.598006 | 2.4:+60185538 | None:intergenic |
CTAAGGAGTTTGTGTATGAA+AGG | 0.598009 | 2.4:-60195202 | MS.gene003272:CDS |
TATAGTTCAGGACCAGATCA+GGG | 0.598515 | 2.4:-60185199 | MS.gene003272:CDS |
CGATAGTGAAAGTGAAGATG+AGG | 0.599130 | 2.4:-60185080 | MS.gene003272:CDS |
GAGGTCGACCCTCAAACCCT+GGG | 0.599761 | 2.4:-60185426 | MS.gene003272:CDS |
AGATATTCCTTGAGGTAAAG+GGG | 0.599791 | 2.4:+60191715 | None:intergenic |
CGCCCAAGATGCATGTGAGG+GGG | 0.601403 | 2.4:+60185637 | None:intergenic |
CGCCCTCGAAATCGAAGTTG+AGG | 0.602456 | 2.4:+60195416 | None:intergenic |
GGAGTATGTTCAGCAACAGA+TGG | 0.603973 | 2.4:+60195277 | None:intergenic |
ATCTGGCTCAGTATATAGCA+AGG | 0.604895 | 2.4:+60186227 | None:intergenic |
AAATGAAGCATTTGACTCTG+TGG | 0.607230 | 2.4:-60190598 | MS.gene003272:CDS |
ATGGGCGATGGATTATCCTA+CGG | 0.607549 | 2.4:-60185571 | MS.gene003272:CDS |
TTCCAAATGGAGGATTCCGA+AGG | 0.608048 | 2.4:-60195442 | None:intergenic |
ACCTCCTCCTCCAATTGAAG+AGG | 0.608458 | 2.4:-60192014 | MS.gene003272:CDS |
GGATTATCCTACGGACCTGG+TGG | 0.610357 | 2.4:-60185562 | MS.gene003272:CDS |
CCATATGGTCCTAGGTTCGG+TGG | 0.617418 | 2.4:-60185484 | MS.gene003272:CDS |
ACAAGTCACAGCAAGATGAT+CGG | 0.617719 | 2.4:-60185108 | MS.gene003272:CDS |
CCAGCTGGCATGATGTTCCG+AGG | 0.617820 | 2.4:-60185445 | MS.gene003272:CDS |
ACGCCCAAGATGCATGTGAG+GGG | 0.617863 | 2.4:+60185636 | None:intergenic |
GCCAACTGCTCACCGATAGA+GGG | 0.624592 | 2.4:+60186252 | None:intergenic |
ACATCAACCCCTTTACCTCA+AGG | 0.625692 | 2.4:-60191722 | MS.gene003272:CDS |
GTATGAAAGGTGAAGCGTGT+GGG | 0.626726 | 2.4:-60195189 | MS.gene003272:CDS |
CAGGGTTTGAGGGTCGACCT+CGG | 0.627119 | 2.4:+60185428 | None:intergenic |
CGAACGCACCAAGAGGTGGT+AGG | 0.627845 | 2.4:-60185324 | MS.gene003272:CDS |
ATCATCCCAAATCCACCACC+GGG | 0.628611 | 2.4:+60185397 | None:intergenic |
GGAGGTGGTGGAAACATCGG+AGG | 0.628646 | 2.4:+60185289 | None:intergenic |
AAGATGACATCCAGAATTGG+TGG | 0.629196 | 2.4:-60189269 | MS.gene003272:CDS |
GATGGATTATCCTACGGACC+TGG | 0.631297 | 2.4:-60185565 | MS.gene003272:CDS |
CGGAACATCATGCCAGCTGG+GGG | 0.631408 | 2.4:+60185448 | None:intergenic |
CTGGAAATATGCTCATGGAA+CGG | 0.636269 | 2.4:-60189228 | MS.gene003272:CDS |
GGCGGTGGAGGTGATTGCGG+TGG | 0.638755 | 2.4:+60195369 | None:intergenic |
AGACATGCTCAGTCAAAGTG+GGG | 0.641645 | 2.4:-60185167 | MS.gene003272:CDS |
ATTGGTGGTTCTGTTGCTGG+GGG | 0.642974 | 2.4:-60189254 | MS.gene003272:CDS |
GGTCCGAACGCACCAAGAGG+TGG | 0.645123 | 2.4:-60185328 | MS.gene003272:CDS |
ATCGGATTGGACGATCGGGG+TGG | 0.646967 | 2.4:+60195339 | None:intergenic |
GGAATTAATTCTGCAAACCA+AGG | 0.649467 | 2.4:-60191878 | MS.gene003272:CDS |
GGAATCGGATTGGACGATCG+GGG | 0.649563 | 2.4:+60195336 | None:intergenic |
TAATTCTGCAAACCAAGGTG+CGG | 0.649941 | 2.4:-60191873 | MS.gene003272:CDS |
TAGGCGGTCAAGACACGGAG+AGG | 0.652708 | 2.4:-60185053 | MS.gene003272:CDS |
ATCGGGTCCACCAGGTCCGT+AGG | 0.656280 | 2.4:+60185555 | None:intergenic |
CACAAGTTTAACCAACAAAG+GGG | 0.657204 | 2.4:-60191944 | MS.gene003272:CDS |
CCAGGTCCGAACGCACCAAG+AGG | 0.659891 | 2.4:-60185331 | MS.gene003272:CDS |
TTCAGCAACAGATGGAGTCG+CGG | 0.661796 | 2.4:+60195285 | None:intergenic |
AAAGTGAAGATGAGGCACCT+AGG | 0.663202 | 2.4:-60185072 | MS.gene003272:CDS |
GTTGCTGCTCCATTGGAAGG+TGG | 0.663759 | 2.4:+60195307 | None:intergenic |
TGTATGAAAGGTGAAGCGTG+TGG | 0.667628 | 2.4:-60195190 | MS.gene003272:CDS |
GATGACATGCAGTATCAGCA+AGG | 0.670720 | 2.4:-60185136 | MS.gene003272:CDS |
GGGGCAGAGGAGGTATGATG+TGG | 0.674845 | 2.4:-60185660 | MS.gene003272:CDS |
CACCACCGGGAAACATCCCA+GGG | 0.675625 | 2.4:+60185410 | None:intergenic |
AGGCGGTCAAGACACGGAGA+GGG | 0.684082 | 2.4:-60185052 | MS.gene003272:CDS |
TTGGAGTTGTCTGTACAACA+AGG | 0.692074 | 2.4:-60190657 | MS.gene003272:CDS |
AACCCTGGGATGTTTCCCGG+TGG | 0.692839 | 2.4:-60185412 | MS.gene003272:CDS |
GACATGCTCAGTCAAAGTGG+GGG | 0.694693 | 2.4:-60185166 | MS.gene003272:CDS |
ATGATGATGAATCCTGGACG+CGG | 0.713076 | 2.4:-60185379 | MS.gene003272:CDS |
ACACACCTAGATATTCCTTG+AGG | 0.718712 | 2.4:+60191707 | None:intergenic |
GGAGTGAATCCAGATAATGG+AGG | 0.727786 | 2.4:-60185799 | MS.gene003272:CDS |
GTGAAGATGAGGCACCTAGG+CGG | 0.740940 | 2.4:-60185069 | MS.gene003272:CDS |
CCATATGGACCAAAACCTCG+GGG | 0.759985 | 2.4:+60185499 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 60185027 | 60195458 | 60185027 | ID=MS.gene003272 |
chr2.4 | mRNA | 60185027 | 60195458 | 60185027 | ID=MS.gene003272.t1;Parent=MS.gene003272 |
chr2.4 | exon | 60195067 | 60195458 | 60195067 | ID=MS.gene003272.t1.exon1;Parent=MS.gene003272.t1 |
chr2.4 | CDS | 60195067 | 60195458 | 60195067 | ID=cds.MS.gene003272.t1;Parent=MS.gene003272.t1 |
chr2.4 | exon | 60191713 | 60192099 | 60191713 | ID=MS.gene003272.t1.exon2;Parent=MS.gene003272.t1 |
chr2.4 | CDS | 60191713 | 60192099 | 60191713 | ID=cds.MS.gene003272.t1;Parent=MS.gene003272.t1 |
chr2.4 | exon | 60190551 | 60190713 | 60190551 | ID=MS.gene003272.t1.exon3;Parent=MS.gene003272.t1 |
chr2.4 | CDS | 60190551 | 60190713 | 60190551 | ID=cds.MS.gene003272.t1;Parent=MS.gene003272.t1 |
chr2.4 | exon | 60189190 | 60189300 | 60189190 | ID=MS.gene003272.t1.exon4;Parent=MS.gene003272.t1 |
chr2.4 | CDS | 60189190 | 60189300 | 60189190 | ID=cds.MS.gene003272.t1;Parent=MS.gene003272.t1 |
chr2.4 | exon | 60187734 | 60187802 | 60187734 | ID=MS.gene003272.t1.exon5;Parent=MS.gene003272.t1 |
chr2.4 | CDS | 60187734 | 60187802 | 60187734 | ID=cds.MS.gene003272.t1;Parent=MS.gene003272.t1 |
chr2.4 | exon | 60186215 | 60186301 | 60186215 | ID=MS.gene003272.t1.exon6;Parent=MS.gene003272.t1 |
chr2.4 | CDS | 60186215 | 60186301 | 60186215 | ID=cds.MS.gene003272.t1;Parent=MS.gene003272.t1 |
chr2.4 | exon | 60185027 | 60185869 | 60185027 | ID=MS.gene003272.t1.exon7;Parent=MS.gene003272.t1 |
chr2.4 | CDS | 60185027 | 60185869 | 60185027 | ID=cds.MS.gene003272.t1;Parent=MS.gene003272.t1 |
Gene Sequence |
Protein sequence |