AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00331

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00331.t1 MTR_2g437240 85.372 417 60 1 1 416 1 417 0.0 709
MS.gene00331.t1 MTR_2g437200 74.813 401 95 2 1 398 1 398 0.0 591
MS.gene00331.t1 MTR_2g438020 71.875 384 108 0 31 414 70 453 0.0 552
MS.gene00331.t1 MTR_2g437170 65.366 410 94 6 19 415 36 410 1.50e-176 499
MS.gene00331.t1 MTR_2g437150 64.428 402 97 5 19 409 36 402 8.76e-172 486
MS.gene00331.t1 MTR_2g437960 64.508 386 99 3 34 416 55 405 1.91e-169 481
MS.gene00331.t1 MTR_2g437960 64.323 384 99 3 34 414 55 403 4.57e-168 478
MS.gene00331.t1 MTR_2g437100 61.939 423 101 6 3 400 10 397 2.36e-166 473
MS.gene00331.t1 MTR_2g437120 63.476 397 104 5 18 409 35 395 1.39e-165 471
MS.gene00331.t1 MTR_2g437160 60.839 429 110 9 3 409 15 407 3.68e-162 462
MS.gene00331.t1 MTR_2g437180 59.207 429 118 7 1 409 1 392 8.75e-161 458
MS.gene00331.t1 MTR_2g437990 62.308 390 108 4 31 417 49 402 1.70e-158 454
MS.gene00331.t1 MTR_2g438010 59.744 390 119 3 31 417 69 423 4.68e-157 450
MS.gene00331.t1 MTR_2g076320 61.282 390 113 3 31 417 49 403 2.23e-155 445
MS.gene00331.t1 MTR_2g437940 54.147 434 117 7 3 417 4 374 6.91e-139 402
MS.gene00331.t1 MTR_2g437130 51.741 402 152 5 15 413 25 387 1.35e-129 379
MS.gene00331.t1 MTR_2g437260 50.122 411 161 6 1 405 1 373 3.60e-129 378
MS.gene00331.t1 MTR_2g437080 46.985 398 169 5 16 410 24 382 1.78e-117 348
MS.gene00331.t1 MTR_2g436440 47.837 393 163 5 21 409 34 388 1.86e-116 345
MS.gene00331.t1 MTR_2g437020 47.229 415 165 9 1 402 1 374 7.47e-115 341
MS.gene00331.t1 MTR_2g437060 47.487 398 162 6 17 405 34 393 1.88e-114 340
MS.gene00331.t1 MTR_2g437040 46.512 387 166 4 27 410 35 383 1.16e-110 330
MS.gene00331.t1 MTR_2g437030 43.499 423 188 5 2 411 85 469 1.49e-110 333
MS.gene00331.t1 MTR_4g119550 46.917 373 159 3 31 402 50 384 3.91e-110 329
MS.gene00331.t1 MTR_2g436400 43.915 378 172 3 27 402 42 381 1.34e-103 312
MS.gene00331.t1 MTR_2g436460 47.581 372 156 5 28 398 43 376 5.58e-102 308
MS.gene00331.t1 MTR_4g119580 42.933 375 172 3 25 395 33 369 1.77e-89 276
MS.gene00331.t1 MTR_4g120380 42.308 364 172 2 32 395 44 369 2.40e-88 273
MS.gene00331.t1 MTR_2g437160 72.678 183 49 1 228 409 134 316 1.50e-87 269
MS.gene00331.t1 MTR_2g437160 34.167 240 87 8 3 174 15 251 7.59e-21 92.8
MS.gene00331.t1 MTR_4g120380 42.609 345 160 2 32 376 44 350 1.01e-82 260
MS.gene00331.t1 MTR_2g019810 40.988 405 186 8 7 403 5 364 1.78e-82 258
MS.gene00331.t1 MTR_2g019840 40.000 375 183 6 32 404 43 377 6.63e-79 249
MS.gene00331.t1 MTR_3g085240 62.105 190 25 3 1 185 21 168 5.24e-62 201
MS.gene00331.t1 MTR_3g085240 60.870 92 19 1 298 389 174 248 4.48e-27 108
MS.gene00331.t1 MTR_2g437090 57.407 162 69 0 241 402 1 162 1.79e-61 196
MS.gene00331.t1 MTR_4g119570 37.652 247 118 2 148 394 17 227 5.25e-44 153
MS.gene00331.t1 MTR_3g450500 27.692 390 232 5 20 395 16 369 7.09e-44 157
MS.gene00331.t1 MTR_4g007490 28.338 367 224 3 32 395 37 367 3.69e-43 155
MS.gene00331.t1 MTR_2g436370 35.945 217 81 6 12 224 28 190 2.20e-30 116
MS.gene00331.t1 MTR_8g081000 26.409 337 209 3 61 395 85 384 1.63e-29 118
MS.gene00331.t1 MTR_8g081000 26.409 337 209 3 61 395 85 384 1.98e-29 118
MS.gene00331.t1 MTR_8g081000 26.409 337 209 3 61 395 85 384 2.92e-29 118
MS.gene00331.t1 MTR_8g080990 28.012 332 200 3 63 392 74 368 4.15e-29 117
MS.gene00331.t1 MTR_4g049400 42.236 161 69 5 1 137 2 162 5.03e-24 100
MS.gene00331.t1 MTR_2g436380 58.333 60 25 0 241 300 1 60 7.05e-16 78.2
MS.gene00331.t1 MTR_2g019830 57.377 61 25 1 338 398 140 199 2.81e-11 63.2
MS.gene00331.t1 MTR_8g012210 23.171 328 201 12 76 395 63 347 2.86e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00331.t1 AT5G07900 31.165 369 210 4 33 395 69 399 1.63e-54 186
MS.gene00331.t1 AT1G21150 29.589 365 219 3 32 393 55 384 7.59e-42 152
MS.gene00331.t1 AT1G21150 29.589 365 219 3 32 393 119 448 3.10e-41 152
MS.gene00331.t1 AT1G21150 28.962 366 222 3 31 393 18 348 3.53e-40 147
MS.gene00331.t1 AT1G61980 27.835 388 205 6 31 381 50 399 1.21e-37 141
MS.gene00331.t1 AT1G61980 27.835 388 205 6 31 381 50 399 1.21e-37 141
MS.gene00331.t1 AT1G61980 27.835 388 205 6 31 381 50 399 1.21e-37 141
MS.gene00331.t1 AT1G61990 27.970 404 205 8 32 395 51 408 1.87e-37 140
MS.gene00331.t1 AT1G61990 27.970 404 205 8 32 395 51 408 1.87e-37 140
MS.gene00331.t1 AT1G61970 26.992 389 203 9 33 381 52 399 9.35e-35 133
MS.gene00331.t1 AT1G61970 26.992 389 203 9 33 381 52 399 9.35e-35 133
MS.gene00331.t1 AT1G61970 26.992 389 203 9 33 381 52 399 9.35e-35 133
MS.gene00331.t1 AT1G61970 26.992 389 203 9 33 381 52 399 9.35e-35 133
MS.gene00331.t1 AT1G61970 26.992 389 203 9 33 381 52 399 9.35e-35 133
MS.gene00331.t1 AT1G61970 26.992 389 203 9 33 381 52 399 9.35e-35 133
MS.gene00331.t1 AT1G61970 26.992 389 203 9 33 381 52 399 9.35e-35 133
MS.gene00331.t1 AT1G62120 26.202 416 231 7 6 381 26 405 8.80e-31 123
MS.gene00331.t1 AT3G46950 27.667 300 174 3 15 313 34 291 7.22e-28 115
MS.gene00331.t1 AT1G61960 25.843 445 214 14 33 400 52 457 3.87e-27 113
MS.gene00331.t1 AT5G64950 25.203 369 217 8 44 395 49 375 2.97e-24 103
MS.gene00331.t1 AT1G62110 27.414 321 179 7 32 341 51 328 8.13e-24 103
MS.gene00331.t1 AT1G62150 24.074 432 218 11 23 381 48 442 3.05e-23 101
MS.gene00331.t1 AT5G23930 24.228 421 205 8 32 381 54 431 2.33e-21 96.3
MS.gene00331.t1 AT1G62085 28.315 279 163 3 33 310 55 297 3.92e-21 95.5
MS.gene00331.t1 AT1G62085 28.315 279 163 3 33 310 55 297 3.92e-21 95.5
MS.gene00331.t1 AT1G62010 23.729 354 191 7 66 381 71 383 3.21e-18 86.7
MS.gene00331.t1 AT1G56380 24.731 372 236 11 34 381 17 368 2.74e-16 80.5
MS.gene00331.t1 AT1G56380 24.731 372 236 11 34 381 28 379 3.27e-16 80.5

Find 71 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCTTGATTTCACGAATTT+AGG 0.108304 2.1:+56137681 None:intergenic
TCCTACCTCATCCACAAATT+TGG 0.167245 2.1:-56137948 MS.gene00331:CDS
GTTAATTTGATGTCTGATTT+TGG 0.175734 2.1:-56137423 MS.gene00331:CDS
CATCCTTCAACGACTTCTTT+TGG 0.239296 2.1:-56137297 MS.gene00331:CDS
TTGGAGGAAGTTAAGTGTTT+AGG 0.257551 2.1:-56137324 MS.gene00331:CDS
TTGATTTGTTGATGAGCTTT+TGG 0.261432 2.1:-56137128 MS.gene00331:CDS
AAGTCAAGGCCATCTATATT+TGG 0.261665 2.1:-56137369 MS.gene00331:CDS
TGGAGGAAGTTAAGTGTTTA+GGG 0.262883 2.1:-56137323 MS.gene00331:CDS
AAACTACCAATGACATTATT+AGG 0.279319 2.1:+56137396 None:intergenic
ACAGATGTTTGGTTATAGTT+TGG 0.313395 2.1:-56137061 MS.gene00331:CDS
TTAAAGCTATATGACGAAAA+AGG 0.320094 2.1:-56136883 MS.gene00331:CDS
AAAGGATTTGATTAAGTCAT+TGG 0.323129 2.1:-56137343 MS.gene00331:CDS
AGCTTGATTTCACGAATTTA+GGG 0.334381 2.1:+56137682 None:intergenic
AAGAAGTTGATAACTGAATC+TGG 0.340602 2.1:+56137864 None:intergenic
ATATCAGTATTTGCTTAATT+CGG 0.356635 2.1:-56137494 MS.gene00331:CDS
AAGCTGTTATTCGAACATTT+AGG 0.358207 2.1:-56137188 MS.gene00331:CDS
ACCAAACATCTGTGGTTGTT+TGG 0.360650 2.1:+56137071 None:intergenic
AATTAACATTATCCACAATA+AGG 0.365879 2.1:+56137439 None:intergenic
GGTAGAGTGGTGTTGTTGAT+AGG 0.366564 2.1:+56138021 None:intergenic
AATTTCTCAGAATAAGTAAA+TGG 0.383750 2.1:+56136955 None:intergenic
ATCAACTTCTTCAAAATTCA+CGG 0.390183 2.1:-56137852 MS.gene00331:CDS
AGATTAGTAAATTACACATT+TGG 0.397073 2.1:+56136822 None:intergenic
TCCTTTGAACCAAATATAGA+TGG 0.398078 2.1:+56137360 None:intergenic
TGAAGAATCTGATAGAAAAT+TGG 0.398100 2.1:+56138000 None:intergenic
ACCAAACAACCACAGATGTT+TGG 0.404766 2.1:-56137072 MS.gene00331:CDS
TTGGTTATAGTTTGGAGAAA+AGG 0.405368 2.1:-56137053 MS.gene00331:CDS
GGAGTTCCTAATAATGTCAT+TGG 0.406851 2.1:-56137402 MS.gene00331:CDS
GTCAGAGGAAGAAGCACCTT+TGG 0.409246 2.1:+56137728 None:intergenic
AAGCTACTTTGCAAAATTTG+AGG 0.420493 2.1:+56137576 None:intergenic
GCCATCTATATTTGGTTCAA+AGG 0.427799 2.1:-56137361 MS.gene00331:CDS
TTCCTCTGACATTGTTCGTA+TGG 0.429860 2.1:-56137715 MS.gene00331:CDS
AGCTACTTTGCAAAATTTGA+GGG 0.433355 2.1:+56137577 None:intergenic
ACATACACCGCATCATCAAA+AGG 0.466920 2.1:-56137815 MS.gene00331:CDS
TTAGTAAATTACACATTTGG+TGG 0.479925 2.1:+56136825 None:intergenic
TGGTTGTTTGGTAAGTATCA+AGG 0.489605 2.1:+56137083 None:intergenic
AAGAGAAACGGTTTGAACAT+TGG 0.491996 2.1:+56138059 None:intergenic
ATTGCTTTGGCAGCCAAGAA+AGG 0.500968 2.1:-56137273 MS.gene00331:CDS
TTTGGGTCAATCAATTGGGT+TGG 0.504756 2.1:-56137110 MS.gene00331:CDS
ATCAGAGGAAGAAGCACCAT+TGG 0.505631 2.1:+56137623 None:intergenic
GAATTCTTATCACCTTATTG+TGG 0.506274 2.1:-56137451 MS.gene00331:CDS
GCAAATACTGATATCCATGT+TGG 0.507799 2.1:+56137503 None:intergenic
CGAACATTTAGGTTGCATCC+TGG 0.509848 2.1:-56137177 MS.gene00331:CDS
ATTCCAAAAGAAGTCGTTGA+AGG 0.513854 2.1:+56137294 None:intergenic
TTTCCTGCGATACCCACAAA+AGG 0.521045 2.1:-56137779 MS.gene00331:CDS
GTTGCATCCTGGTTTGATGT+TGG 0.522713 2.1:-56137166 MS.gene00331:CDS
ACAGCATTGCGGAAGAGAAA+CGG 0.528960 2.1:+56138047 None:intergenic
CTGATAGAAAATTGGTAGAG+TGG 0.530821 2.1:+56138008 None:intergenic
GGTATCGCAGGAAAGAAGCC+AGG 0.539957 2.1:+56137788 None:intergenic
GTAGAGTGGTGTTGTTGATA+GGG 0.540082 2.1:+56138022 None:intergenic
AATTGCATAACTGAGGCCCT+TGG 0.542717 2.1:+56137024 None:intergenic
CATACACCGCATCATCAAAA+GGG 0.551684 2.1:-56137814 MS.gene00331:CDS
AAAAGGCAAACTTGCAACAA+AGG 0.560473 2.1:-56136866 MS.gene00331:CDS
TTGGTAGTTTGCTTAAGTCA+AGG 0.561949 2.1:-56137383 MS.gene00331:CDS
AAACAGTGAATGATTGAGAA+GGG 0.564998 2.1:+56137970 None:intergenic
AGAATCCAAATTTGTGGATG+AGG 0.569749 2.1:+56137943 None:intergenic
TGGAGAAAAGGATCATTCCA+AGG 0.570897 2.1:-56137041 MS.gene00331:CDS
GGATTTGATTAAGTCATTGG+AGG 0.571043 2.1:-56137340 MS.gene00331:CDS
CATGTGAGAATCCAAATTTG+TGG 0.580478 2.1:+56137937 None:intergenic
TCCAAATTTGTGGATGAGGT+AGG 0.597396 2.1:+56137947 None:intergenic
GAAACAGTGAATGATTGAGA+AGG 0.600981 2.1:+56137969 None:intergenic
TAACAATGAAACAATATCAG+AGG 0.619380 2.1:+56137608 None:intergenic
AAACTATAACCAAACATCTG+TGG 0.626842 2.1:+56137063 None:intergenic
AACAGTGAATGATTGAGAAG+GGG 0.629756 2.1:+56137971 None:intergenic
GCATCATCAAAAGGGAACCC+TGG 0.632776 2.1:-56137806 MS.gene00331:CDS
CAAAAGAAATTGCATAACTG+AGG 0.634260 2.1:+56137017 None:intergenic
GGAGAAAAGGATCATTCCAA+GGG 0.639024 2.1:-56137040 MS.gene00331:CDS
ATTGAAGCCAACATCAAACC+AGG 0.644090 2.1:+56137159 None:intergenic
AACCATACGAACAATGTCAG+AGG 0.658039 2.1:+56137713 None:intergenic
TTGATAGGGCAACAGCATTG+CGG 0.672663 2.1:+56138036 None:intergenic
GTATCGCAGGAAAGAAGCCA+GGG 0.691083 2.1:+56137789 None:intergenic
CTTGCAACAAAGGAGAACAA+TGG 0.696510 2.1:-56136856 MS.gene00331:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAACATTATCCACAATA+AGG + chr2.1:56137445-56137464 None:intergenic 20.0%
!! AATTTCTCAGAATAAGTAAA+TGG + chr2.1:56137929-56137948 None:intergenic 20.0%
!! ATATCAGTATTTGCTTAATT+CGG - chr2.1:56137387-56137406 MS.gene00331:CDS 20.0%
!! TACTTAACAATTGAAAAAGA+GGG + chr2.1:56137346-56137365 None:intergenic 20.0%
! AAACTACCAATGACATTATT+AGG + chr2.1:56137488-56137507 None:intergenic 25.0%
! AAAGGATTTGATTAAGTCAT+TGG - chr2.1:56137538-56137557 MS.gene00331:CDS 25.0%
! AAGGTTTGAGTAAAAAACTT+TGG - chr2.1:56137627-56137646 MS.gene00331:CDS 25.0%
! AGGTTTGAGTAAAAAACTTT+GGG - chr2.1:56137628-56137647 MS.gene00331:CDS 25.0%
! ATCAACTTCTTCAAAATTCA+CGG - chr2.1:56137029-56137048 MS.gene00331:CDS 25.0%
! CTACTTAACAATTGAAAAAG+AGG + chr2.1:56137347-56137366 None:intergenic 25.0%
! GAGAGTAAAAATTGAAACTT+TGG + chr2.1:56137134-56137153 None:intergenic 25.0%
! TAACAATGAAACAATATCAG+AGG + chr2.1:56137276-56137295 None:intergenic 25.0%
! TGAAGAATCTGATAGAAAAT+TGG + chr2.1:56136884-56136903 None:intergenic 25.0%
! TTAAAGCTATATGACGAAAA+AGG - chr2.1:56137998-56138017 MS.gene00331:CDS 25.0%
! TTAGTAAATTACACATTTGG+TGG + chr2.1:56138059-56138078 None:intergenic 25.0%
!! AGTTGATGCCTTTAAAAAAT+GGG - chr2.1:56137658-56137677 MS.gene00331:CDS 25.0%
!! ATGCAATTTCTTTTGATGAA+AGG - chr2.1:56137872-56137891 MS.gene00331:CDS 25.0%
!! TTTCAATTTTTACTCTCCAA+AGG - chr2.1:56137137-56137156 MS.gene00331:CDS 25.0%
!!! AAGTTGATGCCTTTAAAAAA+TGG - chr2.1:56137657-56137676 MS.gene00331:CDS 25.0%
!!! CTCTTTTTCAATTGTTAAGT+AGG - chr2.1:56137345-56137364 MS.gene00331:CDS 25.0%
!!! GTTAATTTGATGTCTGATTT+TGG - chr2.1:56137458-56137477 MS.gene00331:CDS 25.0%
!!! TTTCACTTTTTTCTATCCAA+TGG - chr2.1:56137242-56137261 MS.gene00331:CDS 25.0%
!!! TTTTTTACTCAAACCTTTCT+TGG + chr2.1:56137624-56137643 None:intergenic 25.0%
AAACAGTGAATGATTGAGAA+GGG + chr2.1:56136914-56136933 None:intergenic 30.0%
AAACTATAACCAAACATCTG+TGG + chr2.1:56137821-56137840 None:intergenic 30.0%
AAGCTGTTATTCGAACATTT+AGG - chr2.1:56137693-56137712 MS.gene00331:CDS 30.0%
AAGCTTGATTTCACGAATTT+AGG + chr2.1:56137203-56137222 None:intergenic 30.0%
ACAGATGTTTGGTTATAGTT+TGG - chr2.1:56137820-56137839 MS.gene00331:CDS 30.0%
AGCTTGATTTCACGAATTTA+GGG + chr2.1:56137202-56137221 None:intergenic 30.0%
CAAAAGAAATTGCATAACTG+AGG + chr2.1:56137867-56137886 None:intergenic 30.0%
GAATTCTTATCACCTTATTG+TGG - chr2.1:56137430-56137449 MS.gene00331:CDS 30.0%
TCCTTTGAACCAAATATAGA+TGG + chr2.1:56137524-56137543 None:intergenic 30.0%
TTGGTTATAGTTTGGAGAAA+AGG - chr2.1:56137828-56137847 MS.gene00331:CDS 30.0%
! AAGCTACTTTGCAAAATTTG+AGG + chr2.1:56137308-56137327 None:intergenic 30.0%
! AGCTACTTTGCAAAATTTGA+GGG + chr2.1:56137307-56137326 None:intergenic 30.0%
! GTTGATGCCTTTAAAAAATG+GGG - chr2.1:56137659-56137678 MS.gene00331:CDS 30.0%
! TCAAATTTTGCAAAGTAGCT+TGG - chr2.1:56137307-56137326 MS.gene00331:CDS 30.0%
!! AAGAAGTTGATAACTGAATC+TGG + chr2.1:56137020-56137039 None:intergenic 30.0%
!! CAAGTTTGTTTTCTGCTTTA+AGG - chr2.1:56137958-56137977 MS.gene00331:CDS 30.0%
!! TAGGTTTTTGAAAACCAACA+TGG - chr2.1:56137364-56137383 MS.gene00331:CDS 30.0%
!!! GGTTTTGAAATAAAGCTGTT+TGG + chr2.1:56136988-56137007 None:intergenic 30.0%
!!! TGATTTGTTGATGAGCTTTT+GGG - chr2.1:56137754-56137773 MS.gene00331:CDS 30.0%
!!! TTGATTTGTTGATGAGCTTT+TGG - chr2.1:56137753-56137772 MS.gene00331:CDS 30.0%
AAAAGGCAAACTTGCAACAA+AGG - chr2.1:56138015-56138034 MS.gene00331:CDS 35.0%
AACAGTGAATGATTGAGAAG+GGG + chr2.1:56136913-56136932 None:intergenic 35.0%
AAGTCAAGGCCATCTATATT+TGG - chr2.1:56137512-56137531 MS.gene00331:CDS 35.0%
AGAATCCAAATTTGTGGATG+AGG + chr2.1:56136941-56136960 None:intergenic 35.0%
ATTCCAAAAGAAGTCGTTGA+AGG + chr2.1:56137590-56137609 None:intergenic 35.0%
CATGTGAGAATCCAAATTTG+TGG + chr2.1:56136947-56136966 None:intergenic 35.0%
CTGATAGAAAATTGGTAGAG+TGG + chr2.1:56136876-56136895 None:intergenic 35.0%
GAAACAGTGAATGATTGAGA+AGG + chr2.1:56136915-56136934 None:intergenic 35.0%
GCAAATACTGATATCCATGT+TGG + chr2.1:56137381-56137400 None:intergenic 35.0%
GGAGTTCCTAATAATGTCAT+TGG - chr2.1:56137479-56137498 MS.gene00331:CDS 35.0%
GGATTTGATTAAGTCATTGG+AGG - chr2.1:56137541-56137560 MS.gene00331:CDS 35.0%
TGGAGGAAGTTAAGTGTTTA+GGG - chr2.1:56137558-56137577 MS.gene00331:CDS 35.0%
TGGTTGTTTGGTAAGTATCA+AGG + chr2.1:56137801-56137820 None:intergenic 35.0%
TTGGAGGAAGTTAAGTGTTT+AGG - chr2.1:56137557-56137576 MS.gene00331:CDS 35.0%
! ACTTTGGTAGAATCCTTTTG+TGG + chr2.1:56137118-56137137 None:intergenic 35.0%
! ATGCCTTTAAAAAATGGGGT+TGG - chr2.1:56137663-56137682 MS.gene00331:CDS 35.0%
! CTTTGGTAGAATCCTTTTGT+GGG + chr2.1:56137117-56137136 None:intergenic 35.0%
! GCCATCTATATTTGGTTCAA+AGG - chr2.1:56137520-56137539 MS.gene00331:CDS 35.0%
!! AGCTTTTGGGTCAATCAATT+GGG - chr2.1:56137767-56137786 MS.gene00331:CDS 35.0%
!! TTGGTAGTTTGCTTAAGTCA+AGG - chr2.1:56137498-56137517 MS.gene00331:CDS 35.0%
!!! AACTGAATCTGGTTTTTGAG+AGG + chr2.1:56137009-56137028 None:intergenic 35.0%
!!! AGACCAACCCCATTTTTTAA+AGG + chr2.1:56137669-56137688 None:intergenic 35.0%
!!! GACTTCTTTTGGAATTGCTT+TGG - chr2.1:56137595-56137614 MS.gene00331:CDS 35.0%
!!! GTTTGTTTTCTGCTTTAAGG+AGG - chr2.1:56137961-56137980 MS.gene00331:CDS 35.0%
AACCATACGAACAATGTCAG+AGG + chr2.1:56137171-56137190 None:intergenic 40.0%
ACATACACCGCATCATCAAA+AGG - chr2.1:56137066-56137085 MS.gene00331:CDS 40.0%
ACCAAACAACCACAGATGTT+TGG - chr2.1:56137809-56137828 MS.gene00331:CDS 40.0%
ACCAAACATCTGTGGTTGTT+TGG + chr2.1:56137813-56137832 None:intergenic 40.0%
ATTGAAGCCAACATCAAACC+AGG + chr2.1:56137725-56137744 None:intergenic 40.0%
CATACACCGCATCATCAAAA+GGG - chr2.1:56137067-56137086 MS.gene00331:CDS 40.0%
CTTGCAACAAAGGAGAACAA+TGG - chr2.1:56138025-56138044 MS.gene00331:CDS 40.0%
GGAGAAAAGGATCATTCCAA+GGG - chr2.1:56137841-56137860 MS.gene00331:CDS 40.0%
TCCAAATTTGTGGATGAGGT+AGG + chr2.1:56136937-56136956 None:intergenic 40.0%
TCCTACCTCATCCACAAATT+TGG - chr2.1:56136933-56136952 MS.gene00331:CDS 40.0%
TGGAGAAAAGGATCATTCCA+AGG - chr2.1:56137840-56137859 MS.gene00331:CDS 40.0%
TTCCTCTGACATTGTTCGTA+TGG - chr2.1:56137166-56137185 MS.gene00331:CDS 40.0%
TTTGGGTCAATCAATTGGGT+TGG - chr2.1:56137771-56137790 MS.gene00331:CDS 40.0%
! CATCCTTCAACGACTTCTTT+TGG - chr2.1:56137584-56137603 MS.gene00331:CDS 40.0%
!! GAGCTTTTGGGTCAATCAAT+TGG - chr2.1:56137766-56137785 MS.gene00331:CDS 40.0%
!! GTAGAGTGGTGTTGTTGATA+GGG + chr2.1:56136862-56136881 None:intergenic 40.0%
AATTGCATAACTGAGGCCCT+TGG + chr2.1:56137860-56137879 None:intergenic 45.0%
ACAGCATTGCGGAAGAGAAA+CGG + chr2.1:56136837-56136856 None:intergenic 45.0%
ATTGCTTTGGCAGCCAAGAA+AGG - chr2.1:56137608-56137627 MS.gene00331:CDS 45.0%
TTGATAGGGCAACAGCATTG+CGG + chr2.1:56136848-56136867 None:intergenic 45.0%
TTTCCTGCGATACCCACAAA+AGG - chr2.1:56137102-56137121 MS.gene00331:CDS 45.0%
! GTTGCATCCTGGTTTGATGT+TGG - chr2.1:56137715-56137734 MS.gene00331:CDS 45.0%
!! AATCCTTTTGTGGGTATCGC+AGG + chr2.1:56137108-56137127 None:intergenic 45.0%
!! ATCAGAGGAAGAAGCACCAT+TGG + chr2.1:56137261-56137280 None:intergenic 45.0%
!! CGAACATTTAGGTTGCATCC+TGG - chr2.1:56137704-56137723 MS.gene00331:CDS 45.0%
!! GGTAGAGTGGTGTTGTTGAT+AGG + chr2.1:56136863-56136882 None:intergenic 45.0%
!!! AGGGTTCCCTTTTGATGATG+CGG + chr2.1:56137076-56137095 None:intergenic 45.0%
GCATCATCAAAAGGGAACCC+TGG - chr2.1:56137075-56137094 MS.gene00331:CDS 50.0%
GTATCGCAGGAAAGAAGCCA+GGG + chr2.1:56137095-56137114 None:intergenic 50.0%
!! GTCAGAGGAAGAAGCACCTT+TGG + chr2.1:56137156-56137175 None:intergenic 50.0%
GGTATCGCAGGAAAGAAGCC+AGG + chr2.1:56137096-56137115 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 56136825 56138078 56136825 ID=MS.gene00331
chr2.1 mRNA 56136825 56138078 56136825 ID=MS.gene00331.t1;Parent=MS.gene00331
chr2.1 exon 56136825 56138078 56136825 ID=MS.gene00331.t1.exon1;Parent=MS.gene00331.t1
chr2.1 CDS 56136825 56138078 56136825 ID=cds.MS.gene00331.t1;Parent=MS.gene00331.t1
Gene Sequence

>MS.gene00331

ATGTTCAAACCGTTTCTCTTCCGCAATGCTGTTGCCCTATCAACAACACCACTCTACCAATTTTCTATCAGATTCTTCAACACTGCCCCTTCTCAATCATTCACTGTTTCCTACCTCATCCACAAATTTGGATTCTCACATGAATTTGCACTCAAAGCTTCCAAACAGCTTTATTTCAAAACCTCTCAAAAACCAGATTCAGTTATCAACTTCTTCAAAATTCACGGTTTCAATGACTCAGACATACACCGCATCATCAAAAGGGAACCCTGGCTTCTTTCCTGCGATACCCACAAAAGGATTCTACCAAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCTTCCTCTGACATTGTTCGTATGGTTGTAAGTAACCCTAAATTCGTGAAATCAAGCTTGAAAAATCATGAAATTATGTTTCACTTTTTTCTATCCAATGGTGCTTCTTCCTCTGATATTGTTTCATTGTTAACTGCAAACCCTCAAATTTTGCAAAGTAGCTTGGAGAAACGAATAATCCCTCTTTTTCAATTGTTAAGTAGGTTTTTGAAAACCAACATGGATATCAGTATTTGCTTAATTCGGCATTCGACTACATTTTCTATGAATTCTTATCACCTTATTGTGGATAATGTTAATTTGATGTCTGATTTTGGAGTTCCTAATAATGTCATTGGTAGTTTGCTTAAGTCAAGGCCATCTATATTTGGTTCAAAGGATTTGATTAAGTCATTGGAGGAAGTTAAGTGTTTAGGGTTTCATCCTTCAACGACTTCTTTTGGAATTGCTTTGGCAGCCAAGAAAGGTTTGAGTAAAAAACTTTGGGATGAGAAAGTTGATGCCTTTAAAAAATGGGGTTGGTCTGATGAAGCTGTTATTCGAACATTTAGGTTGCATCCTGGTTTGATGTTGGCTTCAATTGATAAGATTGATTTGTTGATGAGCTTTTGGGTCAATCAATTGGGTTGGAGTTCCTTGATACTTACCAAACAACCACAGATGTTTGGTTATAGTTTGGAGAAAAGGATCATTCCAAGGGCCTCAGTTATGCAATTTCTTTTGATGAAAGGTTTGCGAAAAAAGAATGCAAGCTTAACTACACCATTTACTTATTCTGAGAAATTGTTCTTGAGCAAGTTTGTTTTCTGCTTTAAGGAGGAGTCTGATTATCTATTAAAGCTATATGACGAAAAAGGCAAACTTGCAACAAAGGAGAACAATGGCATGCTGTCCACCAAATGTGTAATTTACTAA
Protein sequence

>MS.gene00331.t1

MFKPFLFRNAVALSTTPLYQFSIRFFNTAPSQSFTVSYLIHKFGFSHEFALKASKQLYFKTSQKPDSVINFFKIHGFNDSDIHRIIKREPWLLSCDTHKRILPKFQFLLSKGASSSDIVRMVVSNPKFVKSSLKNHEIMFHFFLSNGASSSDIVSLLTANPQILQSSLEKRIIPLFQLLSRFLKTNMDISICLIRHSTTFSMNSYHLIVDNVNLMSDFGVPNNVIGSLLKSRPSIFGSKDLIKSLEEVKCLGFHPSTTSFGIALAAKKGLSKKLWDEKVDAFKKWGWSDEAVIRTFRLHPGLMLASIDKIDLLMSFWVNQLGWSSLILTKQPQMFGYSLEKRIIPRASVMQFLLMKGLRKKNASLTTPFTYSEKLFLSKFVFCFKEESDYLLKLYDEKGKLATKENNGMLSTKCVIY