Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003335.t1 | AES64821.1 | 83.1 | 160 | 20 | 1 | 1 | 153 | 1 | 160 | 9.40E-63 | 249.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003335.t1 | Q9FFI0 | 35.2 | 122 | 69 | 3 | 15 | 126 | 30 | 151 | 1.8e-09 | 63.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003335.t1 | G7IMI5 | 83.1 | 160 | 20 | 1 | 1 | 153 | 1 | 160 | 6.8e-63 | 249.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene003335.t1 | TF | HB-other |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003335.t1 | MTR_2g030700 | 83.125 | 160 | 20 | 1 | 1 | 153 | 1 | 160 | 4.16e-91 | 261 |
MS.gene003335.t1 | MTR_2g030680 | 83.125 | 160 | 20 | 1 | 1 | 153 | 1 | 160 | 1.53e-90 | 260 |
MS.gene003335.t1 | MTR_2g030720 | 80.000 | 160 | 22 | 2 | 1 | 153 | 1 | 157 | 1.19e-86 | 250 |
MS.gene003335.t1 | MTR_2g030660 | 50.000 | 138 | 61 | 4 | 17 | 151 | 21 | 153 | 5.54e-29 | 111 |
MS.gene003335.t1 | MTR_4g047800 | 31.169 | 154 | 93 | 4 | 10 | 150 | 59 | 212 | 4.38e-16 | 74.7 |
MS.gene003335.t1 | MTR_7g427710 | 32.432 | 111 | 71 | 2 | 17 | 126 | 22 | 129 | 1.44e-14 | 70.1 |
MS.gene003335.t1 | MTR_7g427700 | 35.537 | 121 | 67 | 5 | 17 | 131 | 22 | 137 | 3.31e-14 | 68.9 |
MS.gene003335.t1 | MTR_1g101280 | 30.612 | 147 | 88 | 4 | 15 | 148 | 60 | 205 | 8.18e-14 | 68.2 |
MS.gene003335.t1 | MTR_2g088470 | 31.387 | 137 | 82 | 3 | 15 | 139 | 71 | 207 | 2.80e-13 | 66.6 |
MS.gene003335.t1 | MTR_0198s0030 | 30.328 | 122 | 74 | 3 | 15 | 126 | 59 | 179 | 7.95e-13 | 65.1 |
MS.gene003335.t1 | MTR_2g101720 | 31.148 | 122 | 73 | 3 | 15 | 125 | 143 | 264 | 8.32e-13 | 65.1 |
MS.gene003335.t1 | MTR_6g477820 | 33.588 | 131 | 71 | 4 | 15 | 131 | 33 | 161 | 1.20e-12 | 64.7 |
MS.gene003335.t1 | MTR_6g027290 | 32.800 | 125 | 60 | 3 | 19 | 126 | 33 | 150 | 7.69e-12 | 60.5 |
MS.gene003335.t1 | MTR_5g029320 | 31.405 | 121 | 73 | 2 | 15 | 125 | 93 | 213 | 2.03e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003335.t1 | AT1G05230 | 33.333 | 129 | 77 | 2 | 7 | 126 | 60 | 188 | 1.41e-15 | 73.2 |
MS.gene003335.t1 | AT1G05230 | 33.333 | 129 | 77 | 2 | 7 | 126 | 60 | 188 | 1.41e-15 | 73.2 |
MS.gene003335.t1 | AT1G05230 | 33.333 | 129 | 77 | 2 | 7 | 126 | 60 | 188 | 1.41e-15 | 73.2 |
MS.gene003335.t1 | AT1G05230 | 33.333 | 129 | 77 | 2 | 7 | 126 | 60 | 188 | 1.41e-15 | 73.2 |
MS.gene003335.t1 | AT1G05230 | 33.333 | 129 | 77 | 2 | 7 | 126 | 60 | 188 | 1.41e-15 | 73.2 |
MS.gene003335.t1 | AT1G05230 | 33.333 | 129 | 77 | 2 | 7 | 126 | 60 | 188 | 1.41e-15 | 73.2 |
MS.gene003335.t1 | AT1G05230 | 33.333 | 129 | 77 | 2 | 7 | 126 | 60 | 188 | 1.41e-15 | 73.2 |
MS.gene003335.t1 | AT1G05230 | 33.333 | 129 | 77 | 2 | 7 | 126 | 60 | 188 | 1.41e-15 | 73.2 |
MS.gene003335.t1 | AT1G05230 | 33.333 | 129 | 77 | 2 | 7 | 126 | 60 | 188 | 1.41e-15 | 73.2 |
MS.gene003335.t1 | AT1G05230 | 33.333 | 129 | 77 | 2 | 7 | 126 | 60 | 188 | 1.41e-15 | 73.2 |
MS.gene003335.t1 | AT1G05230 | 33.333 | 129 | 77 | 2 | 7 | 126 | 60 | 188 | 1.41e-15 | 73.2 |
MS.gene003335.t1 | AT4G04890 | 29.677 | 155 | 95 | 4 | 9 | 149 | 60 | 214 | 4.19e-14 | 68.9 |
MS.gene003335.t1 | AT4G04890 | 29.677 | 155 | 95 | 4 | 9 | 149 | 60 | 214 | 4.19e-14 | 68.9 |
MS.gene003335.t1 | AT5G17320 | 35.433 | 127 | 71 | 4 | 14 | 130 | 29 | 154 | 4.46e-14 | 68.9 |
MS.gene003335.t1 | AT4G21750 | 29.921 | 127 | 80 | 2 | 9 | 126 | 60 | 186 | 1.09e-13 | 67.8 |
MS.gene003335.t1 | AT4G21750 | 29.921 | 127 | 80 | 2 | 9 | 126 | 60 | 186 | 1.09e-13 | 67.8 |
MS.gene003335.t1 | AT4G21750 | 29.921 | 127 | 80 | 2 | 9 | 126 | 60 | 186 | 1.09e-13 | 67.8 |
MS.gene003335.t1 | AT4G21750 | 29.921 | 127 | 80 | 2 | 9 | 126 | 60 | 186 | 1.09e-13 | 67.8 |
MS.gene003335.t1 | AT1G79840 | 34.211 | 114 | 71 | 2 | 15 | 125 | 105 | 217 | 3.07e-13 | 66.2 |
MS.gene003335.t1 | AT1G05230 | 33.333 | 138 | 80 | 3 | 7 | 132 | 60 | 197 | 3.80e-13 | 66.2 |
MS.gene003335.t1 | AT1G17920 | 32.824 | 131 | 72 | 4 | 15 | 131 | 25 | 153 | 3.80e-13 | 66.2 |
MS.gene003335.t1 | AT1G17920 | 32.824 | 131 | 72 | 4 | 15 | 131 | 25 | 153 | 3.80e-13 | 66.2 |
MS.gene003335.t1 | AT1G79840 | 34.211 | 114 | 71 | 2 | 15 | 125 | 105 | 217 | 4.36e-13 | 65.9 |
MS.gene003335.t1 | AT1G79840 | 34.211 | 114 | 71 | 2 | 15 | 125 | 134 | 246 | 4.51e-13 | 65.9 |
MS.gene003335.t1 | AT1G79840 | 34.211 | 114 | 71 | 2 | 15 | 125 | 47 | 159 | 4.61e-13 | 65.9 |
MS.gene003335.t1 | AT1G79840 | 34.211 | 114 | 71 | 2 | 15 | 125 | 47 | 159 | 4.61e-13 | 65.9 |
MS.gene003335.t1 | AT1G79840 | 34.211 | 114 | 71 | 2 | 15 | 125 | 105 | 217 | 4.63e-13 | 65.9 |
MS.gene003335.t1 | AT1G73360 | 32.824 | 131 | 72 | 4 | 15 | 131 | 36 | 164 | 1.24e-12 | 64.7 |
MS.gene003335.t1 | AT3G03260 | 33.058 | 121 | 69 | 3 | 17 | 126 | 29 | 148 | 1.41e-12 | 64.7 |
MS.gene003335.t1 | AT3G03260 | 33.058 | 121 | 69 | 3 | 17 | 126 | 29 | 148 | 1.47e-12 | 64.3 |
MS.gene003335.t1 | AT4G17710 | 32.500 | 120 | 74 | 3 | 9 | 125 | 84 | 199 | 1.58e-11 | 61.6 |
MS.gene003335.t1 | AT4G00730 | 33.113 | 151 | 84 | 4 | 9 | 142 | 132 | 282 | 1.73e-11 | 61.2 |
MS.gene003335.t1 | AT5G46880 | 31.008 | 129 | 72 | 3 | 9 | 125 | 109 | 232 | 2.04e-11 | 61.2 |
MS.gene003335.t1 | AT5G46880 | 31.008 | 129 | 72 | 3 | 9 | 125 | 109 | 232 | 2.04e-11 | 61.2 |
MS.gene003335.t1 | AT5G46880 | 31.008 | 129 | 72 | 3 | 9 | 125 | 109 | 232 | 2.04e-11 | 61.2 |
MS.gene003335.t1 | AT4G00730 | 33.113 | 151 | 84 | 4 | 9 | 142 | 132 | 282 | 2.11e-11 | 61.2 |
MS.gene003335.t1 | AT2G32370 | 29.252 | 147 | 88 | 4 | 11 | 147 | 68 | 208 | 2.14e-11 | 61.2 |
Find 27 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTCCATCTGATGATCTTTC+GGG | 0.269210 | 2.4:+58983288 | None:intergenic |
AACCACCAGTTCACTTGTTT+TGG | 0.280631 | 2.4:+58983801 | None:intergenic |
GGTTCCATCTGATGATCTTT+CGG | 0.329348 | 2.4:+58983287 | None:intergenic |
AGCTGAAATTCAAATGCATT+TGG | 0.349094 | 2.4:-58983608 | MS.gene003335:CDS |
TCCTCTTCTCCCAAGTAGCT+TGG | 0.386243 | 2.4:+58983339 | None:intergenic |
AAAATTGAATCCAAGCTACT+TGG | 0.431354 | 2.4:-58983349 | MS.gene003335:CDS |
AATGCATTTGGAAGCGAAAA+GGG | 0.449227 | 2.4:-58983596 | MS.gene003335:CDS |
AAATGCATTTGGAAGCGAAA+AGG | 0.450705 | 2.4:-58983597 | MS.gene003335:CDS |
ATTCTGCTGCTCAAAGATCT+AGG | 0.453800 | 2.4:-58985083 | MS.gene003335:CDS |
TTTGGAAGCGAAAAGGGAAA+TGG | 0.469455 | 2.4:-58983590 | MS.gene003335:CDS |
AACGTGAATCACGGCATGCC+TGG | 0.471704 | 2.4:+58983545 | None:intergenic |
CTCTCACTGGAGTTGAAGTT+AGG | 0.473633 | 2.4:-58983315 | MS.gene003335:CDS |
ATACAAAAGAGCTCAAGTTA+AGG | 0.476145 | 2.4:-58983775 | MS.gene003335:intron |
TTGAGCCAAAACAAGTGAAC+TGG | 0.483755 | 2.4:-58983806 | MS.gene003335:CDS |
ACAAAATAGTGTATCTTGCC+AGG | 0.484637 | 2.4:-58983563 | MS.gene003335:CDS |
TGGCTCAAGACCAAGCTCTT+CGG | 0.488016 | 2.4:+58983821 | None:intergenic |
TCTCAAGAATGCTACTCAAA+AGG | 0.498418 | 2.4:-58983650 | MS.gene003335:intron |
AAATGAACTTCTGAAAGAAA+AGG | 0.522170 | 2.4:-58983503 | MS.gene003335:intron |
GGGAGAAGAGGAACTCTCAC+TGG | 0.543091 | 2.4:-58983328 | MS.gene003335:CDS |
TCCAAGCTACTTGGGAGAAG+AGG | 0.544024 | 2.4:-58983340 | MS.gene003335:CDS |
AGTGAAATAGCCGAAGAGCT+TGG | 0.563271 | 2.4:-58983831 | MS.gene003335:CDS |
GTTGTTTCAAACGTGAATCA+CGG | 0.584844 | 2.4:+58983536 | None:intergenic |
AGCCAAAACAAGTGAACTGG+TGG | 0.610770 | 2.4:-58983803 | MS.gene003335:CDS |
AAATTGAATCCAAGCTACTT+GGG | 0.627395 | 2.4:-58983348 | MS.gene003335:CDS |
ATTCACGTTTGAAACAACTT+CGG | 0.629375 | 2.4:-58983531 | MS.gene003335:CDS |
CTTCCCGAAAGATCATCAGA+TGG | 0.663295 | 2.4:-58983291 | MS.gene003335:CDS |
CTTTGAGCAGCAGAATGACG+AGG | 0.674055 | 2.4:+58985090 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTACAATTGATTTTTTTT+TGG | - | chr2.4:58983725-58983744 | MS.gene003335:intron | 10.0% |
!! | ACGATTAAATTTATAAAGTT+TGG | - | chr2.4:58983472-58983491 | MS.gene003335:intron | 15.0% |
!! | ATTAATGATAATATAAGTAC+CGG | - | chr2.4:58984379-58984398 | MS.gene003335:intron | 15.0% |
!! | TAACAAACAAAAATACAATT+AGG | + | chr2.4:58984515-58984534 | None:intergenic | 15.0% |
!! | TAAGATAACCTAATAATAAA+AGG | + | chr2.4:58983996-58984015 | None:intergenic | 15.0% |
!!! | AATCTCCAAAAATATTTTTT+TGG | - | chr2.4:58983792-58983811 | MS.gene003335:CDS | 15.0% |
!!! | AGGTAACATATTTTTTTTTT+TGG | - | chr2.4:58984658-58984677 | MS.gene003335:intron | 15.0% |
!!! | CTAAGATGTTTTTTTATTAA+TGG | - | chr2.4:58984978-58984997 | MS.gene003335:intron | 15.0% |
!!! | GTATACCAAAAAAATATTTT+TGG | + | chr2.4:58983800-58983819 | None:intergenic | 15.0% |
!! | AAATCAAAATCTCCTTATTA+CGG | - | chr2.4:58983514-58983533 | MS.gene003335:CDS | 20.0% |
!! | ACTTTATAAATTTAATCGTC+CGG | + | chr2.4:58983471-58983490 | None:intergenic | 20.0% |
!! | ATCAACTTATTTACGTTAAA+GGG | + | chr2.4:58984311-58984330 | None:intergenic | 20.0% |
!! | TAGTATGTTATATCAATTAG+TGG | + | chr2.4:58984720-58984739 | None:intergenic | 20.0% |
!! | TATATCTTTCCTAATTAATC+CGG | + | chr2.4:58984401-58984420 | None:intergenic | 20.0% |
!! | TCTAAAAAAAATCATATGCA+AGG | + | chr2.4:58983378-58983397 | None:intergenic | 20.0% |
!! | TTAAATCCATAAAAGTTAGA+TGG | - | chr2.4:58984146-58984165 | MS.gene003335:intron | 20.0% |
!! | TTAACATTTATCGTTTATGT+CGG | + | chr2.4:58984344-58984363 | None:intergenic | 20.0% |
!! | TTATTAATCCATAATATGTG+CGG | + | chr2.4:58983651-58983670 | None:intergenic | 20.0% |
!!! | AAGAATATCAATAGTCTTTT+GGG | + | chr2.4:58984041-58984060 | None:intergenic | 20.0% |
!!! | AATAAACCATCTAACTTTTA+TGG | + | chr2.4:58984155-58984174 | None:intergenic | 20.0% |
!!! | ATTACTCTATAGTTTTTTGA+AGG | - | chr2.4:58983591-58983610 | MS.gene003335:CDS | 20.0% |
!!! | GTAACAATCCTTTTATTATT+AGG | - | chr2.4:58983985-58984004 | MS.gene003335:intron | 20.0% |
!!! | TAAGAATATCAATAGTCTTT+TGG | + | chr2.4:58984042-58984061 | None:intergenic | 20.0% |
!!! | TTTTTTCGTTTGATAGATTT+TGG | - | chr2.4:58983414-58983433 | MS.gene003335:intron | 20.0% |
! | GATCAACTTATTTACGTTAA+AGG | + | chr2.4:58984312-58984331 | None:intergenic | 25.0% |
! | GTCAAATATTATAAATGCGT+GGG | - | chr2.4:58983887-58983906 | MS.gene003335:intron | 25.0% |
! | TCAAATATTATAAATGCGTG+GGG | - | chr2.4:58983888-58983907 | MS.gene003335:intron | 25.0% |
! | TGTCAAATATTATAAATGCG+TGG | - | chr2.4:58983886-58983905 | MS.gene003335:intron | 25.0% |
! | TTGTCTCAAAAAAAAGATCT+AGG | + | chr2.4:58983848-58983867 | None:intergenic | 25.0% |
! | TTTACATTTGCCATTCAAAT+TGG | - | chr2.4:58984469-58984488 | MS.gene003335:intron | 25.0% |
!! | AAAATTTTACCACCGTAATA+AGG | + | chr2.4:58983529-58983548 | None:intergenic | 25.0% |
!! | AAATGAACTTCTGAAAGAAA+AGG | - | chr2.4:58984910-58984929 | MS.gene003335:intron | 25.0% |
!! | TGAGATCTTGAGTTTAAAAT+CGG | + | chr2.4:58984279-58984298 | None:intergenic | 25.0% |
!!! | ATATAAGTACCGGATTAATT+AGG | - | chr2.4:58984389-58984408 | MS.gene003335:intron | 25.0% |
AAAATTGAATCCAAGCTACT+TGG | - | chr2.4:58985064-58985083 | MS.gene003335:intron | 30.0% | |
AAATACATTCATGCAGACAA+TGG | + | chr2.4:58983619-58983638 | None:intergenic | 30.0% | |
AAATTGAATCCAAGCTACTT+GGG | - | chr2.4:58985065-58985084 | MS.gene003335:intron | 30.0% | |
AGCTGAAATTCAAATGCATT+TGG | - | chr2.4:58984805-58984824 | MS.gene003335:intron | 30.0% | |
ATACAAAAGAGCTCAAGTTA+AGG | - | chr2.4:58984638-58984657 | MS.gene003335:intron | 30.0% | |
GGCATGTAAAAAGAATTGAA+TGG | + | chr2.4:58984699-58984718 | None:intergenic | 30.0% | |
TATTGCAAGACCAATTTGAA+TGG | + | chr2.4:58984482-58984501 | None:intergenic | 30.0% | |
TTTGGATAACGATTTGCAAT+TGG | - | chr2.4:58983743-58983762 | MS.gene003335:intron | 30.0% | |
! | ATTCACGTTTGAAACAACTT+CGG | - | chr2.4:58984882-58984901 | MS.gene003335:intron | 30.0% |
! | TTACGGTGGTAAAATTTTTG+TGG | - | chr2.4:58983531-58983550 | MS.gene003335:CDS | 30.0% |
! | TTGGTTCTCTTTAAAGATCT+AGG | - | chr2.4:58983762-58983781 | MS.gene003335:intron | 30.0% |
! | TTTCGTTTGATAGATTTTGG+AGG | - | chr2.4:58983417-58983436 | MS.gene003335:intron | 30.0% |
! | TTTTCTAGATTTGTGCTTCA+TGG | - | chr2.4:58984425-58984444 | MS.gene003335:intron | 30.0% |
!! | TCCTTTTATTTGATTTCGAC+CGG | - | chr2.4:58983449-58983468 | MS.gene003335:intron | 30.0% |
!!! | TCACTTTTTTGCTTATGAGT+TGG | + | chr2.4:58984567-58984586 | None:intergenic | 30.0% |
AAATGCATTTGGAAGCGAAA+AGG | - | chr2.4:58984816-58984835 | MS.gene003335:intron | 35.0% | |
AATGCATTTGGAAGCGAAAA+GGG | - | chr2.4:58984817-58984836 | MS.gene003335:intron | 35.0% | |
AATTGGATTGCACATGATTG+AGG | - | chr2.4:58983567-58983586 | MS.gene003335:CDS | 35.0% | |
ACAAAATAGTGTATCTTGCC+AGG | - | chr2.4:58984850-58984869 | MS.gene003335:intron | 35.0% | |
GGTCGAAATCAAATAAAAGG+AGG | + | chr2.4:58983450-58983469 | None:intergenic | 35.0% | |
TCAAAATCTCCTTATTACGG+TGG | - | chr2.4:58983517-58983536 | MS.gene003335:CDS | 35.0% | |
TCAATCATGTGCAATCCAAT+TGG | + | chr2.4:58983568-58983587 | None:intergenic | 35.0% | |
TCCGGTCGAAATCAAATAAA+AGG | + | chr2.4:58983453-58983472 | None:intergenic | 35.0% | |
TCTCAAGAATGCTACTCAAA+AGG | - | chr2.4:58984763-58984782 | MS.gene003335:intron | 35.0% | |
! | CGATCACGATCTCATTTTAT+CGG | - | chr2.4:58984077-58984096 | MS.gene003335:intron | 35.0% |
! | GTTGTTTCAAACGTGAATCA+CGG | + | chr2.4:58984880-58984899 | None:intergenic | 35.0% |
AGATTAGCGCCACCTAAAAA+TGG | - | chr2.4:58983293-58983312 | MS.gene003335:CDS | 40.0% | |
ATTCTGCTGCTCAAAGATCT+AGG | - | chr2.4:58983330-58983349 | MS.gene003335:CDS | 40.0% | |
GGTTCCATCTGATGATCTTT+CGG | + | chr2.4:58985129-58985148 | None:intergenic | 40.0% | |
GTTCCATCTGATGATCTTTC+GGG | + | chr2.4:58985128-58985147 | None:intergenic | 40.0% | |
TCCATAATATGTGCGGTCAT+TGG | + | chr2.4:58983644-58983663 | None:intergenic | 40.0% | |
TTGAGCCAAAACAAGTGAAC+TGG | - | chr2.4:58984607-58984626 | MS.gene003335:intron | 40.0% | |
TTTGGAAGCGAAAAGGGAAA+TGG | - | chr2.4:58984823-58984842 | MS.gene003335:intron | 40.0% | |
! | AACCACCAGTTCACTTGTTT+TGG | + | chr2.4:58984615-58984634 | None:intergenic | 40.0% |
! | TTATCGTTTATGTCGGTGCT+AGG | + | chr2.4:58984337-58984356 | None:intergenic | 40.0% |
!! | CGAGGAAAAGCTCCATTTTT+AGG | + | chr2.4:58983308-58983327 | None:intergenic | 40.0% |
!! | GGAAAAGCTCCATTTTTAGG+TGG | + | chr2.4:58983305-58983324 | None:intergenic | 40.0% |
AGCCAAAACAAGTGAACTGG+TGG | - | chr2.4:58984610-58984629 | MS.gene003335:intron | 45.0% | |
AGTGAAATAGCCGAAGAGCT+TGG | - | chr2.4:58984582-58984601 | MS.gene003335:intron | 45.0% | |
CTCTCACTGGAGTTGAAGTT+AGG | - | chr2.4:58985098-58985117 | MS.gene003335:CDS | 45.0% | |
CTTCCCGAAAGATCATCAGA+TGG | - | chr2.4:58985122-58985141 | MS.gene003335:CDS | 45.0% | |
GCCAATGACCGCACATATTA+TGG | - | chr2.4:58983640-58983659 | MS.gene003335:CDS | 45.0% | |
! | GTGGAGAGTTTTTCGCCAAT+TGG | - | chr2.4:58983550-58983569 | MS.gene003335:CDS | 45.0% |
!!! | TTTTAAAAAAATAAAACTAA+TGG | + | chr2.4:58983825-58983844 | None:intergenic | 5.0% |
CTTTGAGCAGCAGAATGACG+AGG | + | chr2.4:58983326-58983345 | None:intergenic | 50.0% | |
TCCAAGCTACTTGGGAGAAG+AGG | - | chr2.4:58985073-58985092 | MS.gene003335:intron | 50.0% | |
TCCTCTTCTCCCAAGTAGCT+TGG | + | chr2.4:58985077-58985096 | None:intergenic | 50.0% | |
TGGCTCAAGACCAAGCTCTT+CGG | + | chr2.4:58984595-58984614 | None:intergenic | 50.0% | |
AACGTGAATCACGGCATGCC+TGG | + | chr2.4:58984871-58984890 | None:intergenic | 55.0% | |
GGGAGAAGAGGAACTCTCAC+TGG | - | chr2.4:58985085-58985104 | MS.gene003335:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 58983278 | 58985157 | 58983278 | ID=MS.gene003335 |
chr2.4 | mRNA | 58983278 | 58985157 | 58983278 | ID=MS.gene003335.t1;Parent=MS.gene003335 |
chr2.4 | exon | 58985075 | 58985157 | 58985075 | ID=MS.gene003335.t1.exon1;Parent=MS.gene003335.t1 |
chr2.4 | CDS | 58985075 | 58985157 | 58985075 | ID=cds.MS.gene003335.t1;Parent=MS.gene003335.t1 |
chr2.4 | exon | 58983776 | 58983893 | 58983776 | ID=MS.gene003335.t1.exon2;Parent=MS.gene003335.t1 |
chr2.4 | CDS | 58983776 | 58983893 | 58983776 | ID=cds.MS.gene003335.t1;Parent=MS.gene003335.t1 |
chr2.4 | exon | 58983504 | 58983665 | 58983504 | ID=MS.gene003335.t1.exon3;Parent=MS.gene003335.t1 |
chr2.4 | CDS | 58983504 | 58983665 | 58983504 | ID=cds.MS.gene003335.t1;Parent=MS.gene003335.t1 |
chr2.4 | exon | 58983278 | 58983376 | 58983278 | ID=MS.gene003335.t1.exon4;Parent=MS.gene003335.t1 |
chr2.4 | CDS | 58983278 | 58983376 | 58983278 | ID=cds.MS.gene003335.t1;Parent=MS.gene003335.t1 |
Gene Sequence |
Protein sequence |