Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003403.t1 | XP_013456557.1 | 99.6 | 282 | 1 | 0 | 1 | 282 | 1 | 282 | 4.40E-98 | 367.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003403.t1 | Q9LT23 | 61.5 | 244 | 80 | 4 | 6 | 243 | 58 | 293 | 3.4e-35 | 150.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003403.t1 | A0A072ULE0 | 99.6 | 282 | 1 | 0 | 1 | 282 | 29 | 310 | 3.1e-98 | 367.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene003403.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003403.t1 | MTR_4g075480 | 99.291 | 282 | 2 | 0 | 1 | 282 | 1 | 282 | 0.0 | 575 |
| MS.gene003403.t1 | MTR_4g075480 | 99.291 | 282 | 2 | 0 | 1 | 282 | 29 | 310 | 0.0 | 574 |
| MS.gene003403.t1 | MTR_1g032600 | 53.957 | 278 | 110 | 5 | 6 | 272 | 77 | 347 | 4.80e-92 | 276 |
| MS.gene003403.t1 | MTR_4g081370 | 37.778 | 180 | 92 | 6 | 6 | 184 | 32 | 192 | 2.10e-25 | 100 |
| MS.gene003403.t1 | MTR_4g081370 | 44.361 | 133 | 57 | 3 | 6 | 137 | 76 | 192 | 9.96e-25 | 99.4 |
| MS.gene003403.t1 | MTR_2g082640 | 52.083 | 96 | 45 | 1 | 9 | 103 | 72 | 167 | 3.70e-23 | 95.1 |
| MS.gene003403.t1 | MTR_4g108360 | 45.000 | 100 | 55 | 0 | 7 | 106 | 51 | 150 | 6.72e-21 | 89.4 |
| MS.gene003403.t1 | MTR_1g043430 | 40.000 | 140 | 71 | 4 | 11 | 144 | 95 | 227 | 1.75e-18 | 82.8 |
| MS.gene003403.t1 | MTR_2g089000 | 45.263 | 95 | 51 | 1 | 11 | 104 | 110 | 204 | 2.82e-18 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003403.t1 | AT3G19860 | 62.753 | 247 | 78 | 5 | 6 | 246 | 5 | 243 | 7.18e-96 | 284 |
| MS.gene003403.t1 | AT3G19860 | 62.753 | 247 | 78 | 5 | 6 | 246 | 36 | 274 | 1.68e-95 | 284 |
| MS.gene003403.t1 | AT3G19860 | 62.348 | 247 | 79 | 5 | 6 | 246 | 58 | 296 | 4.61e-95 | 283 |
| MS.gene003403.t1 | AT4G36060 | 43.636 | 275 | 105 | 7 | 9 | 274 | 29 | 262 | 6.71e-54 | 176 |
| MS.gene003403.t1 | AT4G36060 | 43.636 | 275 | 105 | 7 | 9 | 274 | 47 | 280 | 2.24e-53 | 175 |
| MS.gene003403.t1 | AT4G36060 | 44.255 | 235 | 89 | 5 | 9 | 235 | 29 | 229 | 8.69e-52 | 171 |
| MS.gene003403.t1 | AT4G36060 | 44.255 | 235 | 89 | 5 | 9 | 235 | 47 | 247 | 3.93e-51 | 169 |
| MS.gene003403.t1 | AT5G54680 | 37.975 | 158 | 70 | 4 | 11 | 167 | 76 | 206 | 8.48e-22 | 91.7 |
| MS.gene003403.t1 | AT4G14410 | 40.152 | 132 | 64 | 4 | 11 | 132 | 129 | 255 | 1.92e-18 | 83.2 |
| MS.gene003403.t1 | AT4G14410 | 40.152 | 132 | 64 | 4 | 11 | 132 | 129 | 255 | 1.92e-18 | 83.2 |
| MS.gene003403.t1 | AT4G14410 | 40.152 | 132 | 64 | 4 | 11 | 132 | 135 | 261 | 2.85e-18 | 82.8 |
| MS.gene003403.t1 | AT3G23210 | 35.606 | 132 | 77 | 2 | 11 | 134 | 138 | 269 | 6.42e-18 | 82.0 |
| MS.gene003403.t1 | AT1G51070 | 44.681 | 94 | 51 | 1 | 11 | 103 | 71 | 164 | 6.94e-18 | 80.9 |
| MS.gene003403.t1 | AT1G51070 | 44.681 | 94 | 51 | 1 | 11 | 103 | 137 | 230 | 1.54e-17 | 81.3 |
| MS.gene003403.t1 | AT3G23210 | 35.606 | 132 | 77 | 2 | 11 | 134 | 167 | 298 | 1.70e-17 | 81.3 |
| MS.gene003403.t1 | AT3G47640 | 37.113 | 97 | 61 | 0 | 7 | 103 | 28 | 124 | 8.50e-16 | 75.5 |
| MS.gene003403.t1 | AT3G47640 | 37.113 | 97 | 61 | 0 | 7 | 103 | 28 | 124 | 8.50e-16 | 75.5 |
| MS.gene003403.t1 | AT3G47640 | 37.113 | 97 | 61 | 0 | 7 | 103 | 28 | 124 | 8.50e-16 | 75.5 |
Find 70 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGATAAAGCGACCATTCT+AGG | 0.234923 | 4.1:-28450003 | MS.gene003403:CDS |
| AATTGTATTCGGAGCTAAAA+AGG | 0.247255 | 4.1:+28449541 | None:intergenic |
| CGAACTACCTTCTGTGAAAC+TGG | 0.280327 | 4.1:+28449192 | None:intergenic |
| TCCTTAGTTGCAGCTGATAC+TGG | 0.331417 | 4.1:+28449732 | None:intergenic |
| TGTTGTTCAACAATTGTATT+CGG | 0.342434 | 4.1:+28449530 | None:intergenic |
| TTCTTCATCTCACAGTGTTC+AGG | 0.343603 | 4.1:-28449158 | MS.gene003403:CDS |
| GGTAGCCGGTCCCACGTATC+AGG | 0.344490 | 4.1:-28449473 | MS.gene003403:CDS |
| ACCAGTATCAGCTGCAACTA+AGG | 0.363603 | 4.1:-28449733 | MS.gene003403:CDS |
| GATACGTGGGACCGGCTACC+TGG | 0.378928 | 4.1:+28449476 | None:intergenic |
| ACATATGTTGAACAAGGGTT+AGG | 0.393166 | 4.1:+28449566 | None:intergenic |
| TCTGAAATGCAGACCCTGAT+AGG | 0.394717 | 4.1:-28450032 | MS.gene003403:intron |
| AGGATGTTGATTAGCATAGT+AGG | 0.395188 | 4.1:+28449598 | None:intergenic |
| TCTTTGAGCCTTGCTCTCCC+TGG | 0.396650 | 4.1:+28449424 | None:intergenic |
| GCAGGTACCGGCATTGGAAC+TGG | 0.401184 | 4.1:+28449647 | None:intergenic |
| TCCTGGGTCTTCCGCAGATC+AGG | 0.409087 | 4.1:-28449357 | MS.gene003403:intron |
| GACCTTGAGTTGAAGACTCC+TGG | 0.425984 | 4.1:-28449374 | MS.gene003403:CDS |
| GTTTACTAACTTGAGAAGTA+AGG | 0.433635 | 4.1:+28449956 | None:intergenic |
| CTAGCAGGTGTAATTTCCAT+TGG | 0.438402 | 4.1:+28450381 | None:intergenic |
| GTTCAATTTCCAGTTGTCTC+AGG | 0.452373 | 4.1:-28449816 | MS.gene003403:intron |
| CGCCTCTTCATCCAGGTAGC+CGG | 0.455426 | 4.1:-28449487 | MS.gene003403:CDS |
| ATAACGGAATGATCCATTGC+AGG | 0.461908 | 4.1:+28449695 | None:intergenic |
| GGCTACCTGGATGAAGAGGC+GGG | 0.476225 | 4.1:+28449489 | None:intergenic |
| TTCACAGAAGGTAGTTCGTT+AGG | 0.482876 | 4.1:-28449187 | MS.gene003403:CDS |
| GAACCAGCAGGTACCGGCAT+TGG | 0.486966 | 4.1:+28449641 | None:intergenic |
| AGGCTGACCGAGAAAAGTTA+AGG | 0.489877 | 4.1:-28450347 | MS.gene003403:CDS |
| GTTCCAATGCCGGTACCTGC+TGG | 0.492349 | 4.1:-28449644 | MS.gene003403:CDS |
| GGATGTTGATTAGCATAGTA+GGG | 0.493252 | 4.1:+28449599 | None:intergenic |
| CATATGTTGAACAAGGGTTA+GGG | 0.508234 | 4.1:+28449567 | None:intergenic |
| ACCGGCATTGGAACTGGATA+CGG | 0.508537 | 4.1:+28449653 | None:intergenic |
| ACCTTGAGTTGAAGACTCCT+GGG | 0.508601 | 4.1:-28449373 | MS.gene003403:CDS |
| AGCTCATCAAGTAGTGTAGT+GGG | 0.509577 | 4.1:-28449133 | MS.gene003403:CDS |
| TCCGTATCCAGTTCCAATGC+CGG | 0.524495 | 4.1:-28449654 | MS.gene003403:CDS |
| GAATGATCCATTGCAGGCCA+TGG | 0.527462 | 4.1:+28449701 | None:intergenic |
| CAAATCATCCAGGGAGAGCA+AGG | 0.531527 | 4.1:-28449432 | MS.gene003403:CDS |
| ATCTAGTAAGTCGTCGAGGA+AGG | 0.538754 | 4.1:-28449218 | MS.gene003403:CDS |
| TTGAACTGTATCTCCTAGAA+TGG | 0.541064 | 4.1:+28449990 | None:intergenic |
| AATGGATCATTCCGTTATGA+TGG | 0.543467 | 4.1:-28449690 | MS.gene003403:CDS |
| GGAATTGAACCAGCAGGTAC+CGG | 0.545624 | 4.1:+28449635 | None:intergenic |
| ACCTGCTAGAAAGACACAAA+AGG | 0.554651 | 4.1:-28450367 | MS.gene003403:CDS |
| GTATCCCCGCCTCTTCATCC+AGG | 0.556309 | 4.1:-28449494 | MS.gene003403:CDS |
| TATGTATCCATGGCCTGCAA+TGG | 0.558315 | 4.1:-28449708 | MS.gene003403:CDS |
| TAGTAGGGGTACGGCTGCAT+GGG | 0.560037 | 4.1:+28449614 | None:intergenic |
| ATAGTAGGGGTACGGCTGCA+TGG | 0.562866 | 4.1:+28449613 | None:intergenic |
| AACTAAGGACTATGTATCCA+TGG | 0.564461 | 4.1:-28449718 | MS.gene003403:CDS |
| CGGCTACCTGGATGAAGAGG+CGG | 0.573692 | 4.1:+28449488 | None:intergenic |
| ACCCAGGAGTCTTCAACTCA+AGG | 0.576772 | 4.1:+28449372 | None:intergenic |
| TAGTGTAGTGGGGAGCAGAA+AGG | 0.578575 | 4.1:-28449122 | MS.gene003403:CDS |
| TAGCTCATCAAGTAGTGTAG+TGG | 0.582065 | 4.1:-28449134 | MS.gene003403:CDS |
| TGATTAGCATAGTAGGGGTA+CGG | 0.592321 | 4.1:+28449605 | None:intergenic |
| AAGGGAACATATGTTGAACA+AGG | 0.603401 | 4.1:+28449560 | None:intergenic |
| GACCGGCTACCTGGATGAAG+AGG | 0.604106 | 4.1:+28449485 | None:intergenic |
| GGAACTGGATACGGATATGT+TGG | 0.606135 | 4.1:+28449662 | None:intergenic |
| AAGGAAACCAGTTTCACAGA+AGG | 0.607572 | 4.1:-28449199 | MS.gene003403:CDS |
| ACCTGATCTGCGGAAGACCC+AGG | 0.614780 | 4.1:+28449356 | None:intergenic |
| AGATACAGTTCAATTGCTGA+AGG | 0.616836 | 4.1:-28449980 | MS.gene003403:CDS |
| TGTTGGTGGAGCCATCATAA+CGG | 0.621484 | 4.1:+28449679 | None:intergenic |
| CAAGGGTTAGGGATGACTGC+AGG | 0.622814 | 4.1:+28449578 | None:intergenic |
| AGGCGGGGATACGTATTGAG+TGG | 0.624785 | 4.1:+28449505 | None:intergenic |
| GAGCAAGGCTCAAAGAAATG+AGG | 0.629493 | 4.1:-28449417 | MS.gene003403:CDS |
| CTGACCGAGAAAAGTTAAGG+AGG | 0.634700 | 4.1:-28450344 | MS.gene003403:CDS |
| AGCAGCACTAACCTGATCTG+CGG | 0.637188 | 4.1:+28449346 | None:intergenic |
| TGCATGGGAATTGAACCAGC+AGG | 0.642923 | 4.1:+28449629 | None:intergenic |
| TGACCGAGAAAAGTTAAGGA+GGG | 0.651662 | 4.1:-28450343 | MS.gene003403:CDS |
| GCTAAATGAAGAATCTCGTG+AGG | 0.654605 | 4.1:-28449914 | MS.gene003403:intron |
| ACTGGATACGGATATGTTGG+TGG | 0.657323 | 4.1:+28449665 | None:intergenic |
| AGTCTTCAACTCAAGGTCTG+TGG | 0.666361 | 4.1:+28449379 | None:intergenic |
| GATGTTGATTAGCATAGTAG+GGG | 0.671724 | 4.1:+28449600 | None:intergenic |
| GCTACCTGGATGAAGAGGCG+GGG | 0.673729 | 4.1:+28449490 | None:intergenic |
| AGGGAACATATGTTGAACAA+GGG | 0.680887 | 4.1:+28449561 | None:intergenic |
| GCTCATCAAGTAGTGTAGTG+GGG | 0.712201 | 4.1:-28449132 | MS.gene003403:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TGTTGTTCAACAATTGTATT+CGG | + | chr4.1:28449962-28449981 | None:intergenic | 25.0% |
| !!! | ATTAAAGCTGTTTTTGTTGT+CGG | - | chr4.1:28450216-28450235 | MS.gene003403:intron | 25.0% |
| !!! | CTTACTAGATTTTTTTTGTG+CGG | + | chr4.1:28450261-28450280 | None:intergenic | 25.0% |
| AATTGTATTCGGAGCTAAAA+AGG | + | chr4.1:28449951-28449970 | None:intergenic | 30.0% | |
| ATTGTATTCGGAGCTAAAAA+GGG | + | chr4.1:28449950-28449969 | None:intergenic | 30.0% | |
| CGTGAGGTAATATTATATCT+CGG | - | chr4.1:28449591-28449610 | MS.gene003403:CDS | 30.0% | |
| CTAGAATTCATTCATGTGTT+AGG | - | chr4.1:28449364-28449383 | MS.gene003403:CDS | 30.0% | |
| GTTTACTAACTTGAGAAGTA+AGG | + | chr4.1:28449536-28449555 | None:intergenic | 30.0% | |
| !! | ATGGTCGCTTTATCATTTTT+AGG | + | chr4.1:28449483-28449502 | None:intergenic | 30.0% |
| !! | TATCATTTTTAGGCCTATCA+GGG | + | chr4.1:28449473-28449492 | None:intergenic | 30.0% |
| !! | TTATCATTTTTAGGCCTATC+AGG | + | chr4.1:28449474-28449493 | None:intergenic | 30.0% |
| !!! | AATGAACAGTTTTTAGAGCT+GGG | - | chr4.1:28449177-28449196 | MS.gene003403:CDS | 30.0% |
| AAAAATCTAGTAAGTCGTCG+AGG | - | chr4.1:28450267-28450286 | MS.gene003403:intron | 35.0% | |
| AACTAAGGACTATGTATCCA+TGG | - | chr4.1:28449771-28449790 | MS.gene003403:CDS | 35.0% | |
| AAGGGAACATATGTTGAACA+AGG | + | chr4.1:28449932-28449951 | None:intergenic | 35.0% | |
| AATGATAAAGCGACCATTCT+AGG | - | chr4.1:28449486-28449505 | MS.gene003403:CDS | 35.0% | |
| AATGGATCATTCCGTTATGA+TGG | - | chr4.1:28449799-28449818 | MS.gene003403:CDS | 35.0% | |
| ACATATGTTGAACAAGGGTT+AGG | + | chr4.1:28449926-28449945 | None:intergenic | 35.0% | |
| ACTCCAAAAACAAATCATCC+AGG | - | chr4.1:28450047-28450066 | MS.gene003403:intron | 35.0% | |
| AGATACAGTTCAATTGCTGA+AGG | - | chr4.1:28449509-28449528 | MS.gene003403:CDS | 35.0% | |
| AGGGAACATATGTTGAACAA+GGG | + | chr4.1:28449931-28449950 | None:intergenic | 35.0% | |
| CATATGTTGAACAAGGGTTA+GGG | + | chr4.1:28449925-28449944 | None:intergenic | 35.0% | |
| CTCCAAAAACAAATCATCCA+GGG | - | chr4.1:28450048-28450067 | MS.gene003403:intron | 35.0% | |
| TTGAACTGTATCTCCTAGAA+TGG | + | chr4.1:28449502-28449521 | None:intergenic | 35.0% | |
| ! | AGGATGTTGATTAGCATAGT+AGG | + | chr4.1:28449894-28449913 | None:intergenic | 35.0% |
| ! | GATGTTGATTAGCATAGTAG+GGG | + | chr4.1:28449892-28449911 | None:intergenic | 35.0% |
| ! | GGATGTTGATTAGCATAGTA+GGG | + | chr4.1:28449893-28449912 | None:intergenic | 35.0% |
| ! | TCTGGGACATAAATTTACAG+AGG | - | chr4.1:28449636-28449655 | MS.gene003403:CDS | 35.0% |
| ! | TTAGAGCTGGGTAACATTTT+AGG | - | chr4.1:28449189-28449208 | MS.gene003403:CDS | 35.0% |
| ! | TTTTCAACTACATGTTGCGA+AGG | - | chr4.1:28449292-28449311 | MS.gene003403:intron | 35.0% |
| !! | TTTTTGTTGTCGGATTTTGC+AGG | - | chr4.1:28450226-28450245 | MS.gene003403:intron | 35.0% |
| !!! | CAATGAACAGTTTTTAGAGC+TGG | - | chr4.1:28449176-28449195 | MS.gene003403:CDS | 35.0% |
| !!! | GTTAGTGCTGCTTTTTTCTT+GGG | - | chr4.1:28450154-28450173 | MS.gene003403:intron | 35.0% |
| AAGGAAACCAGTTTCACAGA+AGG | - | chr4.1:28450290-28450309 | MS.gene003403:intron | 40.0% | |
| ACCTATAGATGCAGTAGAAG+AGG | - | chr4.1:28450187-28450206 | MS.gene003403:intron | 40.0% | |
| ACCTCTTCTACTGCATCTAT+AGG | + | chr4.1:28450191-28450210 | None:intergenic | 40.0% | |
| ACCTGCTAGAAAGACACAAA+AGG | - | chr4.1:28449122-28449141 | MS.gene003403:CDS | 40.0% | |
| AGAGCACAGAGTAATTCAAG+AGG | + | chr4.1:28449429-28449448 | None:intergenic | 40.0% | |
| AGCTCATCAAGTAGTGTAGT+GGG | - | chr4.1:28450356-28450375 | MS.gene003403:CDS | 40.0% | |
| ATGAATCACCTTGATGCTTC+TGG | - | chr4.1:28449618-28449637 | MS.gene003403:CDS | 40.0% | |
| GCTAAATGAAGAATCTCGTG+AGG | - | chr4.1:28449575-28449594 | MS.gene003403:CDS | 40.0% | |
| GTTCAATTTCCAGTTGTCTC+AGG | - | chr4.1:28449673-28449692 | MS.gene003403:CDS | 40.0% | |
| TAGCTCATCAAGTAGTGTAG+TGG | - | chr4.1:28450355-28450374 | MS.gene003403:CDS | 40.0% | |
| TGAATCACCTTGATGCTTCT+GGG | - | chr4.1:28449619-28449638 | MS.gene003403:CDS | 40.0% | |
| TGACCGAGAAAAGTTAAGGA+GGG | - | chr4.1:28449146-28449165 | MS.gene003403:CDS | 40.0% | |
| TGATTAGCATAGTAGGGGTA+CGG | + | chr4.1:28449887-28449906 | None:intergenic | 40.0% | |
| TTCACAGAAGGTAGTTCGTT+AGG | - | chr4.1:28450302-28450321 | MS.gene003403:CDS | 40.0% | |
| TTCTTCATCTCACAGTGTTC+AGG | - | chr4.1:28450331-28450350 | MS.gene003403:CDS | 40.0% | |
| TTGAATTACTCTGTGCTCTG+TGG | - | chr4.1:28449430-28449449 | MS.gene003403:CDS | 40.0% | |
| ! | ATAACGGAATGATCCATTGC+AGG | + | chr4.1:28449797-28449816 | None:intergenic | 40.0% |
| ! | CATTTTTCTCCTGAGACAAC+TGG | + | chr4.1:28449685-28449704 | None:intergenic | 40.0% |
| ! | GATCCCTCCTTAACTTTTCT+CGG | + | chr4.1:28449152-28449171 | None:intergenic | 40.0% |
| !! | TTTATGTCCCAGAAGCATCA+AGG | + | chr4.1:28449629-28449648 | None:intergenic | 40.0% |
| !!! | AGTCTTGTTTTCCTGATACG+TGG | + | chr4.1:28450030-28450049 | None:intergenic | 40.0% |
| !!! | CTCCCTGGATGATTTGTTTT+TGG | + | chr4.1:28450053-28450072 | None:intergenic | 40.0% |
| !!! | GGTTAGTGCTGCTTTTTTCT+TGG | - | chr4.1:28450153-28450172 | MS.gene003403:intron | 40.0% |
| !!! | GTCTTGTTTTCCTGATACGT+GGG | + | chr4.1:28450029-28450048 | None:intergenic | 40.0% |
| ACCAGTATCAGCTGCAACTA+AGG | - | chr4.1:28449756-28449775 | MS.gene003403:CDS | 45.0% | |
| ACTGGATACGGATATGTTGG+TGG | + | chr4.1:28449827-28449846 | None:intergenic | 45.0% | |
| AGGCTGACCGAGAAAAGTTA+AGG | - | chr4.1:28449142-28449161 | MS.gene003403:CDS | 45.0% | |
| AGTCTTCAACTCAAGGTCTG+TGG | + | chr4.1:28450113-28450132 | None:intergenic | 45.0% | |
| ATCTAGTAAGTCGTCGAGGA+AGG | - | chr4.1:28450271-28450290 | MS.gene003403:intron | 45.0% | |
| CAAAATGTGAGCAGAGTCAC+TGG | - | chr4.1:28449247-28449266 | MS.gene003403:intron | 45.0% | |
| CGAACTACCTTCTGTGAAAC+TGG | + | chr4.1:28450300-28450319 | None:intergenic | 45.0% | |
| CTGACCGAGAAAAGTTAAGG+AGG | - | chr4.1:28449145-28449164 | MS.gene003403:CDS | 45.0% | |
| GAGCAAGGCTCAAAGAAATG+AGG | - | chr4.1:28450072-28450091 | MS.gene003403:intron | 45.0% | |
| GCTCATCAAGTAGTGTAGTG+GGG | - | chr4.1:28450357-28450376 | MS.gene003403:CDS | 45.0% | |
| GGAACTGGATACGGATATGT+TGG | + | chr4.1:28449830-28449849 | None:intergenic | 45.0% | |
| TATGTATCCATGGCCTGCAA+TGG | - | chr4.1:28449781-28449800 | MS.gene003403:CDS | 45.0% | |
| TCCTTAGTTGCAGCTGATAC+TGG | + | chr4.1:28449760-28449779 | None:intergenic | 45.0% | |
| ! | TCTGAAATGCAGACCCTGAT+AGG | - | chr4.1:28449457-28449476 | MS.gene003403:CDS | 45.0% |
| ! | TGTTGGTGGAGCCATCATAA+CGG | + | chr4.1:28449813-28449832 | None:intergenic | 45.0% |
| !! | ACCTTGAGTTGAAGACTCCT+GGG | - | chr4.1:28450116-28450135 | MS.gene003403:intron | 45.0% |
| !! | GCCTTTTGTGTCTTTCTAGC+AGG | + | chr4.1:28449126-28449145 | None:intergenic | 45.0% |
| ACCCAGGAGTCTTCAACTCA+AGG | + | chr4.1:28450120-28450139 | None:intergenic | 50.0% | |
| AGCAGCACTAACCTGATCTG+CGG | + | chr4.1:28450146-28450165 | None:intergenic | 50.0% | |
| CAAATCATCCAGGGAGAGCA+AGG | - | chr4.1:28450057-28450076 | MS.gene003403:intron | 50.0% | |
| GAATGATCCATTGCAGGCCA+TGG | + | chr4.1:28449791-28449810 | None:intergenic | 50.0% | |
| GGAATTGAACCAGCAGGTAC+CGG | + | chr4.1:28449857-28449876 | None:intergenic | 50.0% | |
| TCCGTATCCAGTTCCAATGC+CGG | - | chr4.1:28449835-28449854 | MS.gene003403:intron | 50.0% | |
| TGCATGGGAATTGAACCAGC+AGG | + | chr4.1:28449863-28449882 | None:intergenic | 50.0% | |
| ! | ACCGGCATTGGAACTGGATA+CGG | + | chr4.1:28449839-28449858 | None:intergenic | 50.0% |
| ! | GTTTTCCTGATACGTGGGAC+CGG | + | chr4.1:28450024-28450043 | None:intergenic | 50.0% |
| ! | TAGTGTAGTGGGGAGCAGAA+AGG | - | chr4.1:28450367-28450386 | MS.gene003403:CDS | 50.0% |
| !! | GACCTTGAGTTGAAGACTCC+TGG | - | chr4.1:28450115-28450134 | MS.gene003403:intron | 50.0% |
| AGGCGGGGATACGTATTGAG+TGG | + | chr4.1:28449987-28450006 | None:intergenic | 55.0% | |
| CAAGGGTTAGGGATGACTGC+AGG | + | chr4.1:28449914-28449933 | None:intergenic | 55.0% | |
| TCTTTGAGCCTTGCTCTCCC+TGG | + | chr4.1:28450068-28450087 | None:intergenic | 55.0% | |
| ! | ATAGTAGGGGTACGGCTGCA+TGG | + | chr4.1:28449879-28449898 | None:intergenic | 55.0% |
| ! | TAGTAGGGGTACGGCTGCAT+GGG | + | chr4.1:28449878-28449897 | None:intergenic | 55.0% |
| ACCTGATCTGCGGAAGACCC+AGG | + | chr4.1:28450136-28450155 | None:intergenic | 60.0% | |
| CGCCTCTTCATCCAGGTAGC+CGG | - | chr4.1:28450002-28450021 | MS.gene003403:CDS | 60.0% | |
| CGGCTACCTGGATGAAGAGG+CGG | + | chr4.1:28450004-28450023 | None:intergenic | 60.0% | |
| GACCGGCTACCTGGATGAAG+AGG | + | chr4.1:28450007-28450026 | None:intergenic | 60.0% | |
| GCTACCTGGATGAAGAGGCG+GGG | + | chr4.1:28450002-28450021 | None:intergenic | 60.0% | |
| GGCTACCTGGATGAAGAGGC+GGG | + | chr4.1:28450003-28450022 | None:intergenic | 60.0% | |
| GTATCCCCGCCTCTTCATCC+AGG | - | chr4.1:28449995-28450014 | MS.gene003403:CDS | 60.0% | |
| GTTCCAATGCCGGTACCTGC+TGG | - | chr4.1:28449845-28449864 | MS.gene003403:intron | 60.0% | |
| TCCTGGGTCTTCCGCAGATC+AGG | - | chr4.1:28450132-28450151 | MS.gene003403:intron | 60.0% | |
| !! | GAACCAGCAGGTACCGGCAT+TGG | + | chr4.1:28449851-28449870 | None:intergenic | 60.0% |
| !! | GCAGGTACCGGCATTGGAAC+TGG | + | chr4.1:28449845-28449864 | None:intergenic | 60.0% |
| GATACGTGGGACCGGCTACC+TGG | + | chr4.1:28450016-28450035 | None:intergenic | 65.0% | |
| GGTAGCCGGTCCCACGTATC+AGG | - | chr4.1:28450016-28450035 | MS.gene003403:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 28449111 | 28450400 | 28449111 | ID=MS.gene003403 |
| chr4.1 | mRNA | 28449111 | 28450400 | 28449111 | ID=MS.gene003403.t1;Parent=MS.gene003403 |
| chr4.1 | exon | 28450301 | 28450400 | 28450301 | ID=MS.gene003403.t1.exon1;Parent=MS.gene003403.t1 |
| chr4.1 | CDS | 28450301 | 28450400 | 28450301 | ID=cds.MS.gene003403.t1;Parent=MS.gene003403.t1 |
| chr4.1 | exon | 28449915 | 28450042 | 28449915 | ID=MS.gene003403.t1.exon2;Parent=MS.gene003403.t1 |
| chr4.1 | CDS | 28449915 | 28450042 | 28449915 | ID=cds.MS.gene003403.t1;Parent=MS.gene003403.t1 |
| chr4.1 | exon | 28449358 | 28449825 | 28449358 | ID=MS.gene003403.t1.exon3;Parent=MS.gene003403.t1 |
| chr4.1 | CDS | 28449358 | 28449825 | 28449358 | ID=cds.MS.gene003403.t1;Parent=MS.gene003403.t1 |
| chr4.1 | exon | 28449111 | 28449263 | 28449111 | ID=MS.gene003403.t1.exon4;Parent=MS.gene003403.t1 |
| chr4.1 | CDS | 28449111 | 28449263 | 28449111 | ID=cds.MS.gene003403.t1;Parent=MS.gene003403.t1 |
| Gene Sequence |
| Protein sequence |
