AlfalfaGEDB | MS.gene003554

M. sativa cultivar XinJiangDaYe / MS.gene003554

KEGG: K14400
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003554.t1	XP_013450939.1	81.3	556	99	3	5	555	285	840	9.10E-249	869.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003554.t1	Q0WPF2	44.2	529	260	12	39	555	303	808	2.1e-100	367.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003554.t1	A0A072U5F2	81.3	556	99	3	5	555	147	702	6.5e-249	869.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene003554.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003554.t1	MTR_6g011450	84.586	532	77	3	29	555	309	840	0.0	863
MS.gene003554.t1	MTR_6g011450	84.586	532	77	3	29	555	171	702	0.0	860
MS.gene003554.t1	MTR_4g073340	81.475	556	67	4	1	555	1	521	0.0	825
MS.gene003554.t1	MTR_6g011470	71.837	245	33	3	285	528	1	210	2.00e-116	343
MS.gene003554.t1	MTR_7g103840	33.526	173	110	3	362	531	846	1016	1.18e-31	130
MS.gene003554.t1	MTR_7g103840	33.526	173	110	3	362	531	848	1018	1.40e-31	130
MS.gene003554.t1	MTR_1g061130	34.104	173	107	4	362	529	839	1009	4.49e-30	126
MS.gene003554.t1	MTR_1g061130	34.104	173	107	4	362	529	839	1009	4.80e-30	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003554.t1	AT4G04885	44.630	540	242	15	39	555	303	808	1.85e-122	379
MS.gene003554.t1	AT1G66500	34.722	360	169	14	210	534	66	394	1.84e-47	171
MS.gene003554.t1	AT5G43620	36.333	300	117	12	279	534	119	388	6.95e-44	161
MS.gene003554.t1	AT2G36480	32.941	170	106	3	362	531	786	947	9.44e-25	109
MS.gene003554.t1	AT2G36480	32.941	170	106	3	362	531	786	947	9.44e-25	109

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Find 146 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCTCTTTCAGTTTCC+TGG	0.223690	4.1:+30362906	MS.gene003554:CDS
AAAGAAAGAAGATGAAGAGT+TGG	0.425274	4.1:+30363497	MS.gene003554:CDS
AAAGTTGCTGGCAGAACTGG+TGG	0.562453	4.1:-30362472	None:intergenic
AAATTAGAATATCCAACAGT+TGG	0.545058	4.1:-30363024	None:intergenic
AACAAGTTGTGCATTTGGCA+GGG	0.544007	4.1:-30362851	None:intergenic
AACAGCTCTTTCAGTTTCCT+GGG	0.369668	4.1:+30362907	MS.gene003554:CDS
AAGAGCTGTTTGCAATTCTT+TGG	0.300209	4.1:-30362894	None:intergenic
AATAGTACCAGTGTGAGTAA+TGG	0.608110	4.1:+30362601	MS.gene003554:CDS
AATATAGGAGTTATGCTGGT+AGG	0.575043	4.1:-30362532	None:intergenic
AATATCCAACAGTTGGCTGT+TGG	0.544187	4.1:-30363017	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACAGGACATTGCATT+TGG	-	chr4.1:30364017-30364036	None:intergenic	30.0%
AAAGAAAGAAGATGAAGAGT+TGG	+	chr4.1:30363497-30363516	MS.gene003554:CDS	30.0%
AAGTCACCAAAAGAACAATA+TGG	-	chr4.1:30363939-30363958	None:intergenic	30.0%
ACATGCGATTTACGATATAA+TGG	-	chr4.1:30363982-30364001	None:intergenic	30.0%
AGAAACCATTACTTCTACTA+TGG	-	chr4.1:30362342-30362361	None:intergenic	30.0%
TCAATATTAGAATTGAGACC+AGG	-	chr4.1:30362445-30362464	None:intergenic	30.0%
TCACTGTAAAACTTGTCAAA+AGG	-	chr4.1:30363570-30363589	None:intergenic	30.0%
TCCATCACAAAATATTCAGA+CGG	-	chr4.1:30363717-30363736	None:intergenic	30.0%
TGCATTTAGCATGAATAATG+GGG	-	chr4.1:30363680-30363699	None:intergenic	30.0%
TTATTCCATTAGGCGTATTA+AGG	-	chr4.1:30363629-30363648	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	30362022	30364285	30362022	ID=MS.gene003554
chr4.1	mRNA	30362022	30364285	30362022	ID=MS.gene003554.t1;Parent=MS.gene003554
chr4.1	exon	30362022	30363104	30362022	ID=MS.gene003554.t1.exon1;Parent=MS.gene003554.t1
chr4.1	CDS	30362022	30363104	30362022	ID=cds.MS.gene003554.t1;Parent=MS.gene003554.t1
chr4.1	exon	30363204	30363743	30363204	ID=MS.gene003554.t1.exon2;Parent=MS.gene003554.t1
chr4.1	CDS	30363204	30363743	30363204	ID=cds.MS.gene003554.t1;Parent=MS.gene003554.t1
chr4.1	exon	30364241	30364285	30364241	ID=MS.gene003554.t1.exon3;Parent=MS.gene003554.t1
chr4.1	CDS	30364241	30364285	30364241	ID=cds.MS.gene003554.t1;Parent=MS.gene003554.t1

Gene Sequence

>MS.gene003554

ATGCTTGCTGATGGTTTTCATCTTGGTGGGAATACTCGGAGCGAAATACCAAAGAATTCTTCATCAGTTATCTCAAACATTCCGCGAAAGAGATGTTTTGATGAGTTAAGCTATCTCAACAACGGACAACCGCGCCAAAATCCAAGAGCTCTAATTGATGCCTATGGTAGTGACAAAAGCCAAGAAACTTCTGGCAGTAAGCCTTTGTTAGTGGAGCGACCGGATAAAAACAGTATGGATAAGTTTATGACAACATCATGGCAGAATACTGAAGAGGAGGAGTTCGATTGGGAAGATATGAGTCCGACACTAGTAGACCATAGTAGAAGTAATGGTTTCTTGCAACCAACTATTGGTTTCTCATCAGAAAAGCCTGTTACCGTTGCAGCAAGTGCAACTACTTCAGCGTCAAGGGTGTTTCCTGGTCTCAATTCTAATATTGAGTACCGTCCACCAGTTCTGCCAGCAACTTTTGAAACGAGGCGCTCCATAAATGTGCATGCTCCGCGTCCTACCAGCATAACTCCTATATTTCCATCGAAGAATCCTGTTAGGAATCCATTCGAATCAATAAATGCTAATAGTACCAGTGTGAGTAATGGTCTAATTAACAGACCTTTTCCTGTGCATGAACATGGTGTTGAGAACAACAATACCAGTAAAAGAAACCTGTATCAGTTGCCTAATCAGCTACCCGGTCTGATTTCATCTAACCCGCATAACAGTGGACAAACGCCACCATTCCGGTTTTTTCCATCTCAGGATCCAGCAGCGTCACAATTTACTTATAGCACTTCTTTGCCAGGACATTGTGCTGCTATGAGTAACCCCCTGCCAAATGCACAACTTGTTATGCCACTTCCTTCGCCAGGCCAAAGAATTGCAAACAGCTCTTTCAGTTTCCTGGGGGGAGCTTTGCCACCTTTACCTCCAGCTGGCCCACATGCTCTACCCCAGATTCTACCTAATCCCAATCCTGGTCCTTCTGTGTCAAGCCAACAGCCAACTGTTGGATATTCTAATTTGATTAGTTCACTCATGGCCCAAGGTGTTATGTCATTGGCTAATCAAGCCCCTGCGCTGGTAACTAAATCTATCCTTAGTTTAATTTTTATATCCTATTTTCCTTCCATTTTTGTTTGATTGCGTACCAATTTTGCAATTATATTATTATGTTTGTAGGATTTTGTTGGCATTGAGTTTGATCCAAATCTTCTGAAGGTTCGTCATGAATCTGCAATCAGTGCCTTATATGGCGATCTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAGTCCCAAGATGAGCACAGAAGTCACATGGATTGGCATGTGACTAAGAACCGTATGTCTAAAATCCATAAGCAGAAGCCCTCTCGCAAGTGGTTTGTGAGTGAGACGATGTGGCTAGGTGCAGAGGCATTGGGAGCTGAATCAGCTCCAGGTTTTTTGCCAACCGAGACCACTGAGGAAAAGAAAGAAGATGAAGAGTTGGCAGTTCTTGCTGACGAGGACCAAAATACATGTGCATTATGTAGAGAACCTTTTGACAAGTTTTACAGTGATGAAACAGAGGATTGGATGTATAGAGGAGCTGTATACCTTAATACGCCTAATGGAATAACAACAGGCATGGACAGGTCGCAGTTAGGCCCCATTATTCATGCTAAATGCATATCTGAATCTACCCCGTCTGAATATTTTGTGATGGATGAAGGGGTATGTGTTTCTTGTATTATTACTTTTCTATGCATTGTCTTGTTTTTGTTCCACTTTATGTCTTTAATTCATTGACTGACACATGTTTTTGGGGGAGAACAATACTAGTTGACTAGATTTCTTTGCAACTTTATGTTTTTTCTTTCCCATTGGTAAAACTTGTTTTTGAGGGAGATGTCCAGAATTCAGCAGCCATATTGTTCTTTTGGTGACTTCTCTTCAAGTGAGAATCAATCCATTATATCGTAAATCGCATGTTTTGGCTGAAATCCAAATGCAATGTCCTGTTTTTTCCGTCTTCTATGTCATGTCTTGCAAATGAGGATATCATGGTTTAAAATAGCTTGCAACACTAGGCATGGTAAAAACTGCAAATATATGTGCCTATTTAATGGCTGCCAACTTCACATGATGTTATTATTTCAAGTGGACTTTTGCATGTGCTGATGTTCTTCAAGCAGAGCAAATATTTATTCTTTTGTTTTCCTTGTATGCAGGGCACCTATGAAGAAGGCAGCCAAAGAAAACGAATGCAGAGCTGA

Protein sequence

>MS.gene003554.t1

MLADGFHLGGNTRSEIPKNSSSVISNIPRKRCFDELSYLNNGQPRQNPRALIDAYGSDKSQETSGSKPLLVERPDKNSMDKFMTTSWQNTEEEEFDWEDMSPTLVDHSRSNGFLQPTIGFSSEKPVTVAASATTSASRVFPGLNSNIEYRPPVLPATFETRRSINVHAPRPTSITPIFPSKNPVRNPFESINANSTSVSNGLINRPFPVHEHGVENNNTSKRNLYQLPNQLPGLISSNPHNSGQTPPFRFFPSQDPAASQFTYSTSLPGHCAAMSNPLPNAQLVMPLPSPGQRIANSSFSFLGGALPPLPPAGPHALPQILPNPNPGPSVSSQQPTVGYSNLISSLMAQGVMSLANQAPALDFVGIEFDPNLLKVRHESAISALYGDLPRQCTTCGLRFKSQDEHRSHMDWHVTKNRMSKIHKQKPSRKWFVSETMWLGAEALGAESAPGFLPTETTEEKKEDEELAVLADEDQNTCALCREPFDKFYSDETEDWMYRGAVYLNTPNGITTGMDRSQLGPIIHAKCISESTPSEYFVMDEGGTYEEGSQRKRMQS