AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00359

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00359.t1 MTR_2g437240 75.240 416 95 3 1 414 1 410 0.0 610
MS.gene00359.t1 MTR_2g437200 75.802 405 88 3 1 402 1 398 0.0 598
MS.gene00359.t1 MTR_2g438020 76.010 396 92 2 24 417 57 451 0.0 595
MS.gene00359.t1 MTR_2g437170 63.246 419 102 6 14 415 20 403 3.70e-173 490
MS.gene00359.t1 MTR_2g437150 62.470 421 106 6 14 417 20 405 4.44e-173 490
MS.gene00359.t1 MTR_2g437120 63.768 414 103 5 14 416 20 397 1.68e-172 489
MS.gene00359.t1 MTR_2g437960 65.969 382 91 3 38 415 53 399 2.47e-171 486
MS.gene00359.t1 MTR_2g437960 65.969 382 91 3 38 415 53 399 2.91e-171 485
MS.gene00359.t1 MTR_2g437180 61.713 397 113 3 23 417 36 395 5.68e-165 469
MS.gene00359.t1 MTR_2g437100 60.808 421 109 6 3 402 10 395 7.09e-160 456
MS.gene00359.t1 MTR_2g076320 60.628 414 118 5 14 417 20 398 9.81e-159 453
MS.gene00359.t1 MTR_2g437160 56.845 431 133 6 3 416 15 409 4.80e-157 449
MS.gene00359.t1 MTR_2g438010 58.454 414 127 5 14 417 40 418 2.65e-156 448
MS.gene00359.t1 MTR_2g437990 59.662 414 121 6 14 417 20 397 4.42e-154 442
MS.gene00359.t1 MTR_2g437940 56.148 431 108 7 3 417 4 369 2.48e-146 421
MS.gene00359.t1 MTR_2g437130 54.545 418 141 7 3 417 15 386 6.01e-141 407
MS.gene00359.t1 MTR_2g437080 48.744 398 161 5 21 414 24 382 2.85e-123 362
MS.gene00359.t1 MTR_2g437260 47.826 414 170 7 1 409 1 373 4.78e-123 362
MS.gene00359.t1 MTR_2g437060 49.618 393 155 6 22 410 40 393 1.55e-122 361
MS.gene00359.t1 MTR_2g436440 48.731 394 159 5 25 414 34 388 8.94e-120 353
MS.gene00359.t1 MTR_2g437020 48.130 401 156 7 19 410 21 378 6.83e-118 348
MS.gene00359.t1 MTR_2g437040 47.870 399 161 7 22 414 25 382 3.10e-114 339
MS.gene00359.t1 MTR_2g437030 46.231 398 163 6 25 414 114 468 1.51e-111 335
MS.gene00359.t1 MTR_2g436400 45.932 381 164 5 30 406 39 381 1.91e-108 325
MS.gene00359.t1 MTR_4g119550 44.619 381 170 5 33 410 46 388 3.14e-106 319
MS.gene00359.t1 MTR_2g436460 46.174 379 157 5 31 403 40 377 4.20e-97 295
MS.gene00359.t1 MTR_4g120380 42.742 372 173 3 31 400 37 370 2.78e-90 278
MS.gene00359.t1 MTR_2g437160 71.892 185 50 1 234 416 134 318 1.18e-88 272
MS.gene00359.t1 MTR_2g437160 44.531 128 56 3 3 115 15 142 1.85e-21 94.7
MS.gene00359.t1 MTR_4g119580 42.021 376 176 5 29 400 33 370 4.18e-86 267
MS.gene00359.t1 MTR_4g120380 42.466 365 171 3 31 394 37 363 6.30e-86 268
MS.gene00359.t1 MTR_2g019810 42.893 401 170 9 11 402 9 359 2.66e-81 254
MS.gene00359.t1 MTR_2g019840 40.100 399 194 8 8 402 14 371 2.00e-77 245
MS.gene00359.t1 MTR_2g437090 54.971 171 75 1 247 415 1 171 1.40e-61 197
MS.gene00359.t1 MTR_4g119570 38.889 252 116 4 151 400 14 229 7.02e-48 163
MS.gene00359.t1 MTR_3g085240 45.344 247 76 7 1 243 21 212 2.42e-47 163
MS.gene00359.t1 MTR_3g085240 57.778 90 19 2 306 393 176 248 2.14e-21 93.2
MS.gene00359.t1 MTR_3g450500 30.541 370 213 6 24 387 24 355 1.17e-46 164
MS.gene00359.t1 MTR_4g007490 30.319 376 214 9 19 387 19 353 2.05e-41 150
MS.gene00359.t1 MTR_2g436370 37.755 196 82 4 30 223 38 195 4.36e-33 124
MS.gene00359.t1 MTR_8g081000 28.107 338 202 4 67 400 85 385 8.14e-32 125
MS.gene00359.t1 MTR_8g081000 28.107 338 202 4 67 400 85 385 1.02e-31 125
MS.gene00359.t1 MTR_8g081000 27.859 341 199 5 67 400 85 385 1.46e-31 124
MS.gene00359.t1 MTR_8g080990 28.614 332 196 5 69 396 74 368 9.15e-30 119
MS.gene00359.t1 MTR_4g049400 40.491 163 79 4 1 145 2 164 2.96e-26 106
MS.gene00359.t1 MTR_2g436380 43.434 99 53 1 247 345 1 96 7.06e-18 84.0
MS.gene00359.t1 MTR_4g070060 24.233 326 219 10 48 356 251 565 3.84e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00359.t1 AT5G07900 31.793 368 205 5 40 399 70 399 1.29e-55 189
MS.gene00359.t1 AT1G21150 30.878 353 206 3 40 389 57 374 1.06e-43 157
MS.gene00359.t1 AT1G21150 30.878 353 206 3 40 389 121 438 3.69e-43 157
MS.gene00359.t1 AT1G21150 30.252 357 211 3 36 389 17 338 9.19e-43 154
MS.gene00359.t1 AT1G62120 29.280 403 212 7 31 396 48 414 1.31e-35 136
MS.gene00359.t1 AT1G61980 29.008 393 204 9 40 395 53 407 1.92e-35 135
MS.gene00359.t1 AT1G61980 29.008 393 204 9 40 395 53 407 1.92e-35 135
MS.gene00359.t1 AT1G61980 29.008 393 204 9 40 395 53 407 1.92e-35 135
MS.gene00359.t1 AT1G61990 27.249 389 199 6 40 389 53 396 2.63e-34 132
MS.gene00359.t1 AT1G61990 27.249 389 199 6 40 389 53 396 2.63e-34 132
MS.gene00359.t1 AT1G61970 27.577 388 200 9 40 387 53 399 2.63e-33 129
MS.gene00359.t1 AT1G61970 27.577 388 200 9 40 387 53 399 2.63e-33 129
MS.gene00359.t1 AT1G61970 27.577 388 200 9 40 387 53 399 2.63e-33 129
MS.gene00359.t1 AT1G61970 27.577 388 200 9 40 387 53 399 2.63e-33 129
MS.gene00359.t1 AT1G61970 27.577 388 200 9 40 387 53 399 2.63e-33 129
MS.gene00359.t1 AT1G61970 27.577 388 200 9 40 387 53 399 2.63e-33 129
MS.gene00359.t1 AT1G61970 27.577 388 200 9 40 387 53 399 2.63e-33 129
MS.gene00359.t1 AT5G64950 27.056 377 227 8 25 389 22 362 5.32e-31 122
MS.gene00359.t1 AT3G46950 30.476 315 170 9 11 319 20 291 8.39e-29 117
MS.gene00359.t1 AT1G62085 25.581 387 246 8 40 387 56 439 7.10e-27 112
MS.gene00359.t1 AT1G62085 25.581 387 246 8 40 387 56 439 7.10e-27 112
MS.gene00359.t1 AT1G62150 24.318 403 253 11 40 398 59 453 1.62e-26 111
MS.gene00359.t1 AT1G61960 26.379 417 250 13 40 412 53 456 2.66e-26 110
MS.gene00359.t1 AT5G23930 27.132 387 240 10 40 391 56 435 5.12e-22 98.2
MS.gene00359.t1 AT1G62110 28.674 279 162 4 40 317 53 295 1.64e-21 96.7
MS.gene00359.t1 AT1G56380 23.238 383 259 12 34 396 21 388 4.76e-16 79.7
MS.gene00359.t1 AT1G56380 23.238 383 259 12 34 396 10 377 5.31e-16 79.7
MS.gene00359.t1 AT2G44020 22.819 298 221 3 74 365 147 441 3.67e-13 71.6

Find 72 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTTGATGGCTGATTT+TGG 0.115073 2.1:+55745433 MS.gene00359:CDS
GCCATCTATATTTGGTTTAA+AGG 0.141804 2.1:+55745495 MS.gene00359:CDS
GATCCTAAGTTGACTACTTT+TGG 0.155784 2.1:+55745559 MS.gene00359:CDS
CAGTCAAGGCCATCTATATT+TGG 0.179813 2.1:+55745487 MS.gene00359:CDS
AAACTATAACAAAACATATT+TGG 0.239296 2.1:-55745793 None:intergenic
TTGGAGGAAGTTAAGTGTTT+AGG 0.257551 2.1:+55745532 MS.gene00359:CDS
TGGAGGAAGTTAAGTGTTTA+GGG 0.262883 2.1:+55745533 MS.gene00359:CDS
TCCTACCTCATCGGCAAATT+CGG 0.270473 2.1:+55744908 MS.gene00359:CDS
TCTCTGCTTAATTCGATATT+CGG 0.275206 2.1:+55745369 MS.gene00359:CDS
AGACCAACCCCATTTCTTAA+AGG 0.307244 2.1:-55745641 None:intergenic
TTTGTTATAGTTTACATAAA+AGG 0.315414 2.1:+55745803 MS.gene00359:CDS
GCAGAGAATGGTGTCCTTGC+TGG 0.321424 2.1:-55745353 None:intergenic
CTTGAGCAAGTTTGTCTTGA+AGG 0.325723 2.1:+55745927 MS.gene00359:CDS
AAAGGATTTGATTAAGTCAT+TGG 0.335353 2.1:+55745513 MS.gene00359:CDS
CTCTGCTTAATTCGATATTC+GGG 0.336261 2.1:+55745370 MS.gene00359:CDS
AAACTAATCTGTAAAATTGC+AGG 0.337554 2.1:-55745280 None:intergenic
TGTAGGTAACCCTAAGTTCT+TGG 0.343348 2.1:+55745165 MS.gene00359:CDS
AAGGTTAATTCCAAGAACTT+AGG 0.349475 2.1:-55745175 None:intergenic
AAGTTGATACCTTTAAGAAA+TGG 0.365182 2.1:+55745632 MS.gene00359:CDS
AGTTGATACCTTTAAGAAAT+GGG 0.365271 2.1:+55745633 MS.gene00359:CDS
CTTAATTTGATGATTCTTCA+AGG 0.370385 2.1:-55745194 None:intergenic
ATCAGATGACGAAGCGCCTT+TGG 0.371747 2.1:-55745233 None:intergenic
ATTGAAGCCAACATCAAATT+AGG 0.374513 2.1:-55745697 None:intergenic
ATATCTTCAGAATAAGTAAA+TGG 0.375368 2.1:-55745901 None:intergenic
AAGAAGTTGAGAACTGAATC+TGG 0.386478 2.1:-55744992 None:intergenic
AATTGATATTAGCCACAATA+AGG 0.389243 2.1:-55745417 None:intergenic
TGTGGCTAATATCAATTTGA+TGG 0.392207 2.1:+55745423 MS.gene00359:CDS
TCCTTTAAACCAAATATAGA+TGG 0.404648 2.1:-55745496 None:intergenic
AGGTTAATTCCAAGAACTTA+GGG 0.412164 2.1:-55745174 None:intergenic
TCAATTAGGTTGGGATTCCT+TGG 0.416390 2.1:+55745756 MS.gene00359:CDS
AATTGCAAAACTGAGGCTCT+TGG 0.425012 2.1:-55745832 None:intergenic
GTCAGAGTAAGAAGCACCTT+TGG 0.435377 2.1:-55745128 None:intergenic
TTGGGTCAATCAATTAGGTT+GGG 0.436055 2.1:+55745747 MS.gene00359:CDS
ACATACGCAATATCATCAAA+AGG 0.441484 2.1:+55745041 MS.gene00359:CDS
GACATTGTCCGCATGGTTGT+AGG 0.452422 2.1:+55745148 MS.gene00359:CDS
GAAATCACATATTAAGTGAA+TGG 0.476870 2.1:-55746024 None:intergenic
TTTGGGTCAATCAATTAGGT+TGG 0.477232 2.1:+55745746 MS.gene00359:CDS
GTTGCTTTGGTAGCCAAGAA+AGG 0.483813 2.1:+55745583 MS.gene00359:CDS
ATGAGGTAGGAAACGGTGAA+TGG 0.498531 2.1:-55744896 None:intergenic
AACTAATCTGTAAAATTGCA+GGG 0.522503 2.1:-55745279 None:intergenic
ATATCAGCCTAATTTGATGT+TGG 0.524802 2.1:+55745690 MS.gene00359:CDS
CATACGCAATATCATCAAAA+GGG 0.533856 2.1:+55745042 MS.gene00359:CDS
ATTAGCCACAATAAGGCGAT+AGG 0.536156 2.1:-55745410 None:intergenic
TGAGGTAGGAAACGGTGAAT+GGG 0.540099 2.1:-55744895 None:intergenic
TTGCAAGTTTGCTTCAGTCA+AGG 0.549052 2.1:+55745473 MS.gene00359:CDS
TGGAAATTTAGCAAGTGCCA+AGG 0.550727 2.1:-55745773 None:intergenic
GTTGATACCTTTAAGAAATG+GGG 0.553181 2.1:+55745634 MS.gene00359:CDS
CGGCAAATTCGGATTCTCGC+AGG 0.558102 2.1:+55744919 MS.gene00359:CDS
GGATTTGATTAAGTCATTGG+AGG 0.561173 2.1:+55745516 MS.gene00359:CDS
AAATTTGAGAGAAAATAGGA+AGG 0.566350 2.1:-55744846 None:intergenic
ATATCGAATTAAGCAGAGAA+TGG 0.572002 2.1:-55745365 None:intergenic
TTACTCTGACATTGTCCGCA+TGG 0.575114 2.1:+55745141 MS.gene00359:CDS
AAATCCCTATCGCCTTATTG+TGG 0.576235 2.1:+55745405 MS.gene00359:CDS
TTCACCGTTTCCTACCTCAT+CGG 0.587137 2.1:+55744899 MS.gene00359:CDS
ACCCCAAAAGTAGTCAACTT+AGG 0.587643 2.1:-55745562 None:intergenic
ATACCTTTAAGAAATGGGGT+TGG 0.587688 2.1:+55745638 MS.gene00359:CDS
GAGCAAGTTTGTCTTGAAGG+AGG 0.590871 2.1:+55745930 MS.gene00359:CDS
TAGGTTCTTTAATTCCAGCA+AGG 0.604223 2.1:+55745339 MS.gene00359:CDS
TTAGCCACAATAAGGCGATA+GGG 0.609256 2.1:-55745409 None:intergenic
ATATCATCAAAAGGGAACCA+TGG 0.612508 2.1:+55745050 MS.gene00359:CDS
TTTGCCGATGAGGTAGGAAA+CGG 0.624046 2.1:-55744903 None:intergenic
CAAAAGAAATTGCAAAACTG+AGG 0.625549 2.1:-55745839 None:intergenic
AGAATCCGAATTTGCCGATG+AGG 0.626280 2.1:-55744913 None:intergenic
TCCGAATTTGCCGATGAGGT+AGG 0.627507 2.1:-55744909 None:intergenic
GTATCGCAGGAAAGAATCCA+TGG 0.639912 2.1:-55745067 None:intergenic
AATTTGAGAGAAAATAGGAA+GGG 0.640674 2.1:-55744845 None:intergenic
GTGTGAATGTGAATTTGAAG+TGG 0.648017 2.1:-55744873 None:intergenic
AATGAAACTTGCATACACAA+AGG 0.663379 2.1:+55745987 MS.gene00359:CDS
CTATCTATTAAAGTTATACG+AGG 0.674399 2.1:+55745960 MS.gene00359:CDS
GATATTGCGTATGTGTGAGT+CGG 0.676436 2.1:-55745032 None:intergenic
GCATACACAAAGGAGAACAA+TGG 0.692068 2.1:+55745997 MS.gene00359:CDS
TAGGGTTACCTACAACCATG+CGG 0.768933 2.1:-55745156 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTATAACAAAACATATT+TGG - chr2.1:55745796-55745815 None:intergenic 15.0%
!! TATTTAACAATTCAAAAAGA+GGG - chr2.1:55745321-55745340 None:intergenic 15.0%
!!! TTTGTTATAGTTTACATAAA+AGG + chr2.1:55745803-55745822 MS.gene00359:CDS 15.0%
!! AAGGTTTAAGTAAAAAACTT+TGG + chr2.1:55745602-55745621 MS.gene00359:CDS 20.0%
!! AGAAAAATTTGAGAGAAAAT+AGG - chr2.1:55744853-55744872 None:intergenic 20.0%
!! AGATTAAAAACTGAAACTTT+GGG - chr2.1:55745108-55745127 None:intergenic 20.0%
!! AGGTTTAAGTAAAAAACTTT+GGG + chr2.1:55745603-55745622 MS.gene00359:CDS 20.0%
!! ATATCTTCAGAATAAGTAAA+TGG - chr2.1:55745904-55745923 None:intergenic 20.0%
!! CTATTTAACAATTCAAAAAG+AGG - chr2.1:55745322-55745341 None:intergenic 20.0%
!!! CTCTTTTTGAATTGTTAAAT+AGG + chr2.1:55745320-55745339 MS.gene00359:CDS 20.0%
!!! TTTGAATATTTTCTATCCAA+AGG + chr2.1:55745217-55745236 MS.gene00359:CDS 20.0%
!!! TTTTTTACTTAAACCTTTCT+TGG - chr2.1:55745599-55745618 None:intergenic 20.0%
! AAACTAATCTGTAAAATTGC+AGG - chr2.1:55745283-55745302 None:intergenic 25.0%
! AAAGGATTTGATTAAGTCAT+TGG + chr2.1:55745513-55745532 MS.gene00359:CDS 25.0%
! AAATTTGAGAGAAAATAGGA+AGG - chr2.1:55744849-55744868 None:intergenic 25.0%
! AACTAATCTGTAAAATTGCA+GGG - chr2.1:55745282-55745301 None:intergenic 25.0%
! AATTGATATTAGCCACAATA+AGG - chr2.1:55745420-55745439 None:intergenic 25.0%
! AATTTGAGAGAAAATAGGAA+GGG - chr2.1:55744848-55744867 None:intergenic 25.0%
! CTATCTATTAAAGTTATACG+AGG + chr2.1:55745960-55745979 MS.gene00359:CDS 25.0%
! CTCAACTTCTTAAAAAATCA+CGG + chr2.1:55745004-55745023 MS.gene00359:CDS 25.0%
! GAGATTAAAAACTGAAACTT+TGG - chr2.1:55745109-55745128 None:intergenic 25.0%
! TCCTTTAAACCAAATATAGA+TGG - chr2.1:55745499-55745518 None:intergenic 25.0%
!! AGTTGATACCTTTAAGAAAT+GGG + chr2.1:55745633-55745652 MS.gene00359:CDS 25.0%
!! CTTAATTTGATGATTCTTCA+AGG - chr2.1:55745197-55745216 None:intergenic 25.0%
!! TTGCAATTTCTTTTGATGAA+AGG + chr2.1:55745847-55745866 MS.gene00359:CDS 25.0%
!! TTTCAGTTTTTAATCTCCAA+AGG + chr2.1:55745112-55745131 MS.gene00359:CDS 25.0%
!!! AAGTTGATACCTTTAAGAAA+TGG + chr2.1:55745632-55745651 MS.gene00359:CDS 25.0%
!!! TGCAATTTTACAGATTAGTT+TGG + chr2.1:55745282-55745301 MS.gene00359:CDS 25.0%
AAGGTTAATTCCAAGAACTT+AGG - chr2.1:55745178-55745197 None:intergenic 30.0%
AATGAAACTTGCATACACAA+AGG + chr2.1:55745987-55746006 MS.gene00359:CDS 30.0%
ACATACGCAATATCATCAAA+AGG + chr2.1:55745041-55745060 MS.gene00359:CDS 30.0%
AGGTTAATTCCAAGAACTTA+GGG - chr2.1:55745177-55745196 None:intergenic 30.0%
ATATCAGCCTAATTTGATGT+TGG + chr2.1:55745690-55745709 MS.gene00359:CDS 30.0%
ATATCGAATTAAGCAGAGAA+TGG - chr2.1:55745368-55745387 None:intergenic 30.0%
ATTGAAGCCAACATCAAATT+AGG - chr2.1:55745700-55745719 None:intergenic 30.0%
CAAAAGAAATTGCAAAACTG+AGG - chr2.1:55745842-55745861 None:intergenic 30.0%
CATACGCAATATCATCAAAA+GGG + chr2.1:55745042-55745061 MS.gene00359:CDS 30.0%
TCTCTGCTTAATTCGATATT+CGG + chr2.1:55745369-55745388 MS.gene00359:CDS 30.0%
TGTGGCTAATATCAATTTGA+TGG + chr2.1:55745423-55745442 MS.gene00359:CDS 30.0%
! GCCATCTATATTTGGTTTAA+AGG + chr2.1:55745495-55745514 MS.gene00359:CDS 30.0%
! GTTGATACCTTTAAGAAATG+GGG + chr2.1:55745634-55745653 MS.gene00359:CDS 30.0%
!! ATCAATTTGATGGCTGATTT+TGG + chr2.1:55745433-55745452 MS.gene00359:CDS 30.0%
!! ATCCTAAGTTGACTACTTTT+GGG + chr2.1:55745560-55745579 MS.gene00359:CDS 30.0%
!!! AGTTTTTGGGTCAATCAATT+AGG + chr2.1:55745742-55745761 MS.gene00359:CDS 30.0%
!!! GGTTTTGAAATAAAGCTCTT+TGG - chr2.1:55744963-55744982 None:intergenic 30.0%
!!! TAGTTTGCTGATGAGTTTTT+GGG + chr2.1:55745729-55745748 MS.gene00359:CDS 30.0%
!!! TTAGTTTGCTGATGAGTTTT+TGG + chr2.1:55745728-55745747 MS.gene00359:CDS 30.0%
AAGAAGTTGAGAACTGAATC+TGG - chr2.1:55744995-55745014 None:intergenic 35.0%
ATATCATCAAAAGGGAACCA+TGG + chr2.1:55745050-55745069 MS.gene00359:CDS 35.0%
CTCTGCTTAATTCGATATTC+GGG + chr2.1:55745370-55745389 MS.gene00359:CDS 35.0%
GGATTTGATTAAGTCATTGG+AGG + chr2.1:55745516-55745535 MS.gene00359:CDS 35.0%
GTGTGAATGTGAATTTGAAG+TGG - chr2.1:55744876-55744895 None:intergenic 35.0%
TAGGTTCTTTAATTCCAGCA+AGG + chr2.1:55745339-55745358 MS.gene00359:CDS 35.0%
TGGAGGAAGTTAAGTGTTTA+GGG + chr2.1:55745533-55745552 MS.gene00359:CDS 35.0%
TTGGAGGAAGTTAAGTGTTT+AGG + chr2.1:55745532-55745551 MS.gene00359:CDS 35.0%
TTGGGTCAATCAATTAGGTT+GGG + chr2.1:55745747-55745766 MS.gene00359:CDS 35.0%
TTTGGGTCAATCAATTAGGT+TGG + chr2.1:55745746-55745765 MS.gene00359:CDS 35.0%
! ATACCTTTAAGAAATGGGGT+TGG + chr2.1:55745638-55745657 MS.gene00359:CDS 35.0%
!! GATCCTAAGTTGACTACTTT+TGG + chr2.1:55745559-55745578 MS.gene00359:CDS 35.0%
!! TCCTAAGTTGACTACTTTTG+GGG + chr2.1:55745561-55745580 MS.gene00359:CDS 35.0%
!!! AACTGAATCTGGTTTTTGTG+AGG - chr2.1:55744984-55745003 None:intergenic 35.0%
AATTGCAAAACTGAGGCTCT+TGG - chr2.1:55745835-55745854 None:intergenic 40.0%
ACCCCAAAAGTAGTCAACTT+AGG - chr2.1:55745565-55745584 None:intergenic 40.0%
AGACCAACCCCATTTCTTAA+AGG - chr2.1:55745644-55745663 None:intergenic 40.0%
ATTAGCCACAATAAGGCGAT+AGG - chr2.1:55745413-55745432 None:intergenic 40.0%
CAGTCAAGGCCATCTATATT+TGG + chr2.1:55745487-55745506 MS.gene00359:CDS 40.0%
CTTGAGCAAGTTTGTCTTGA+AGG + chr2.1:55745927-55745946 MS.gene00359:CDS 40.0%
GATATTGCGTATGTGTGAGT+CGG - chr2.1:55745035-55745054 None:intergenic 40.0%
GCATACACAAAGGAGAACAA+TGG + chr2.1:55745997-55746016 MS.gene00359:CDS 40.0%
TGGAAATTTAGCAAGTGCCA+AGG - chr2.1:55745776-55745795 None:intergenic 40.0%
TGTAGGTAACCCTAAGTTCT+TGG + chr2.1:55745165-55745184 MS.gene00359:CDS 40.0%
TTAGCCACAATAAGGCGATA+GGG - chr2.1:55745412-55745431 None:intergenic 40.0%
! AAATCCCTATCGCCTTATTG+TGG + chr2.1:55745405-55745424 MS.gene00359:CDS 40.0%
! TTGCAAGTTTGCTTCAGTCA+AGG + chr2.1:55745473-55745492 MS.gene00359:CDS 40.0%
!! ACTTTGGGAGAATCGTTTTG+TGG - chr2.1:55745093-55745112 None:intergenic 40.0%
!! CTTTGGGAGAATCGTTTTGT+GGG - chr2.1:55745092-55745111 None:intergenic 40.0%
!! TCAATTAGGTTGGGATTCCT+TGG + chr2.1:55745756-55745775 MS.gene00359:CDS 40.0%
AGAATCCGAATTTGCCGATG+AGG - chr2.1:55744916-55744935 None:intergenic 45.0%
ATGAGGTAGGAAACGGTGAA+TGG - chr2.1:55744899-55744918 None:intergenic 45.0%
GAGCAAGTTTGTCTTGAAGG+AGG + chr2.1:55745930-55745949 MS.gene00359:CDS 45.0%
GTATCGCAGGAAAGAATCCA+TGG - chr2.1:55745070-55745089 None:intergenic 45.0%
TAGGGTTACCTACAACCATG+CGG - chr2.1:55745159-55745178 None:intergenic 45.0%
TCCTACCTCATCGGCAAATT+CGG + chr2.1:55744908-55744927 MS.gene00359:CDS 45.0%
TGAGGTAGGAAACGGTGAAT+GGG - chr2.1:55744898-55744917 None:intergenic 45.0%
TTACTCTGACATTGTCCGCA+TGG + chr2.1:55745141-55745160 MS.gene00359:CDS 45.0%
TTCACCGTTTCCTACCTCAT+CGG + chr2.1:55744899-55744918 MS.gene00359:CDS 45.0%
TTTGCCGATGAGGTAGGAAA+CGG - chr2.1:55744906-55744925 None:intergenic 45.0%
! GTTGCTTTGGTAGCCAAGAA+AGG + chr2.1:55745583-55745602 MS.gene00359:CDS 45.0%
!! AATCGTTTTGTGGGTATCGC+AGG - chr2.1:55745083-55745102 None:intergenic 45.0%
!! GTCAGAGTAAGAAGCACCTT+TGG - chr2.1:55745131-55745150 None:intergenic 45.0%
!!! GACTACTTTTGGGGTTGCTT+TGG + chr2.1:55745570-55745589 MS.gene00359:CDS 45.0%
GACATTGTCCGCATGGTTGT+AGG + chr2.1:55745148-55745167 MS.gene00359:CDS 50.0%
TCCGAATTTGCCGATGAGGT+AGG - chr2.1:55744912-55744931 None:intergenic 50.0%
! ATCAGATGACGAAGCGCCTT+TGG - chr2.1:55745236-55745255 None:intergenic 50.0%
CGGCAAATTCGGATTCTCGC+AGG + chr2.1:55744919-55744938 MS.gene00359:CDS 55.0%
GCAGAGAATGGTGTCCTTGC+TGG - chr2.1:55745356-55745375 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 55744782 55746035 55744782 ID=MS.gene00359
chr2.1 mRNA 55744782 55746035 55744782 ID=MS.gene00359.t1;Parent=MS.gene00359
chr2.1 exon 55744782 55746035 55744782 ID=MS.gene00359.t1.exon1;Parent=MS.gene00359.t1
chr2.1 CDS 55744782 55746035 55744782 ID=cds.MS.gene00359.t1;Parent=MS.gene00359.t1
Gene Sequence

>MS.gene00359

ATGTTGAAAGCTTTTCTTTGCAACAATGCATTTCGCATATCAACAACAACACTCTACAATGCACCCTTCCTATTTTCTCTCAAATTTTTCTCCACTTCAAATTCACATTCACACCCATTCACCGTTTCCTACCTCATCGGCAAATTCGGATTCTCGCAGGAATTTGCACTCAAAGCTTCCAAAGAGCTTTATTTCAAAACCTCACAAAAACCAGATTCAGTTCTCAACTTCTTAAAAAATCACGGTTTCACCGACTCACACATACGCAATATCATCAAAAGGGAACCATGGATTCTTTCCTGCGATACCCACAAAACGATTCTCCCAAAGTTTCAGTTTTTAATCTCCAAAGGTGCTTCTTACTCTGACATTGTCCGCATGGTTGTAGGTAACCCTAAGTTCTTGGAATTAACCTTGAAGAATCATCAAATTAAGTTTGAATATTTTCTATCCAAAGGCGCTTCGTCATCTGATATTGTTTCATTGTTAACTGCAAACCCTGCAATTTTACAGATTAGTTTGGAGAAACGAATAATCCCTCTTTTTGAATTGTTAAATAGGTTCTTTAATTCCAGCAAGGACACCATTCTCTGCTTAATTCGATATTCGGGTGCATTTATTATAAATCCCTATCGCCTTATTGTGGCTAATATCAATTTGATGGCTGATTTTGGAGTTTCTGATAATGTCATTGCAAGTTTGCTTCAGTCAAGGCCATCTATATTTGGTTTAAAGGATTTGATTAAGTCATTGGAGGAAGTTAAGTGTTTAGGGTTTGATCCTAAGTTGACTACTTTTGGGGTTGCTTTGGTAGCCAAGAAAGGTTTAAGTAAAAAACTTTGGGATGAGAAAGTTGATACCTTTAAGAAATGGGGTTGGTCTGATGAAGATGTAATTCGAGCATTTAGATATCAGCCTAATTTGATGTTGGCTTCAATTGATAAGATTAGTTTGCTGATGAGTTTTTGGGTCAATCAATTAGGTTGGGATTCCTTGGCACTTGCTAAATTTCCAAATATGTTTTGTTATAGTTTACATAAAAGGATCATTCCAAGAGCCTCAGTTTTGCAATTTCTTTTGATGAAAGGTTTGCGAAAAAAGAATGCAAGCTTAGTCACACCATTTACTTATTCTGAAGATATGTTCTTGAGCAAGTTTGTCTTGAAGGAGGAGTCTAACTATCTATTAAAGTTATACGAGGAAAAAATGAAACTTGCATACACAAAGGAGAACAATGGCATGCCATTCACTTAA
Protein sequence

>MS.gene00359.t1

MLKAFLCNNAFRISTTTLYNAPFLFSLKFFSTSNSHSHPFTVSYLIGKFGFSQEFALKASKELYFKTSQKPDSVLNFLKNHGFTDSHIRNIIKREPWILSCDTHKTILPKFQFLISKGASYSDIVRMVVGNPKFLELTLKNHQIKFEYFLSKGASSSDIVSLLTANPAILQISLEKRIIPLFELLNRFFNSSKDTILCLIRYSGAFIINPYRLIVANINLMADFGVSDNVIASLLQSRPSIFGLKDLIKSLEEVKCLGFDPKLTTFGVALVAKKGLSKKLWDEKVDTFKKWGWSDEDVIRAFRYQPNLMLASIDKISLLMSFWVNQLGWDSLALAKFPNMFCYSLHKRIIPRASVLQFLLMKGLRKKNASLVTPFTYSEDMFLSKFVLKEESNYLLKLYEEKMKLAYTKENNGMPFT