AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00362

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00362.t1 MTR_2g437240 54.869 421 96 6 1 334 1 414 1.28e-140 404
MS.gene00362.t1 MTR_2g437200 61.562 320 79 4 1 284 1 312 3.64e-126 367
MS.gene00362.t1 MTR_2g438020 66.894 293 61 2 27 284 60 351 1.26e-123 364
MS.gene00362.t1 MTR_2g437170 53.846 377 111 8 18 332 29 404 2.12e-123 360
MS.gene00362.t1 MTR_2g437960 54.416 351 105 6 38 334 53 402 1.39e-121 355
MS.gene00362.t1 MTR_2g437960 54.416 351 105 6 38 334 53 402 1.54e-121 356
MS.gene00362.t1 MTR_2g437180 51.654 393 127 8 3 333 4 395 2.47e-121 355
MS.gene00362.t1 MTR_2g437150 51.938 387 118 8 14 333 20 405 1.41e-120 353
MS.gene00362.t1 MTR_2g437990 51.181 381 124 6 14 334 20 398 1.44e-113 336
MS.gene00362.t1 MTR_2g437120 50.794 378 123 7 14 330 20 395 8.79e-113 333
MS.gene00362.t1 MTR_2g437100 50.388 387 120 7 3 318 10 395 2.24e-111 330
MS.gene00362.t1 MTR_2g076320 50.131 381 129 6 14 334 20 399 1.01e-110 328
MS.gene00362.t1 MTR_2g437160 47.475 396 139 9 3 331 15 408 3.31e-110 327
MS.gene00362.t1 MTR_2g437130 50.137 365 123 5 22 334 30 387 9.08e-110 325
MS.gene00362.t1 MTR_2g438010 58.423 279 107 3 14 284 40 317 2.96e-106 317
MS.gene00362.t1 MTR_2g437260 53.147 286 124 5 1 283 1 279 3.43e-99 298
MS.gene00362.t1 MTR_2g437940 45.789 380 118 8 14 334 20 370 1.31e-95 288
MS.gene00362.t1 MTR_2g437080 50.000 266 126 3 21 284 24 284 1.78e-85 263
MS.gene00362.t1 MTR_2g436440 49.810 263 125 3 25 285 34 291 3.07e-82 254
MS.gene00362.t1 MTR_2g437060 49.434 265 127 4 22 284 40 299 1.65e-80 250
MS.gene00362.t1 MTR_2g437030 49.618 262 125 3 25 284 114 370 3.76e-80 252
MS.gene00362.t1 MTR_2g437020 40.220 363 157 7 19 326 21 378 7.98e-80 248
MS.gene00362.t1 MTR_4g119550 39.017 346 154 4 34 326 47 388 1.26e-79 248
MS.gene00362.t1 MTR_2g437040 40.220 363 158 6 22 330 25 382 3.11e-79 247
MS.gene00362.t1 MTR_2g436400 39.710 345 150 6 32 322 41 381 7.68e-75 235
MS.gene00362.t1 MTR_2g436460 46.457 254 131 2 31 283 40 289 2.23e-68 219
MS.gene00362.t1 MTR_4g120380 44.269 253 137 1 31 283 37 285 1.91e-63 206
MS.gene00362.t1 MTR_4g120380 44.269 253 137 1 31 283 37 285 1.43e-62 205
MS.gene00362.t1 MTR_4g119580 42.912 261 144 2 24 283 29 285 2.87e-62 203
MS.gene00362.t1 MTR_2g019840 39.130 276 158 6 11 283 17 285 2.76e-54 182
MS.gene00362.t1 MTR_2g019810 40.000 290 150 6 1 283 1 273 6.54e-54 181
MS.gene00362.t1 MTR_3g450500 31.698 265 171 3 24 282 24 284 6.12e-42 150
MS.gene00362.t1 MTR_2g436370 46.250 160 80 4 32 189 40 195 2.35e-38 135
MS.gene00362.t1 MTR_4g007490 33.459 266 173 3 19 282 19 282 7.00e-38 139
MS.gene00362.t1 MTR_2g437160 40.761 184 57 4 200 331 134 317 3.36e-36 133
MS.gene00362.t1 MTR_3g085240 42.723 213 97 6 1 209 21 212 1.17e-35 130
MS.gene00362.t1 MTR_4g119570 38.356 219 110 6 116 314 14 227 1.88e-35 129
MS.gene00362.t1 MTR_4g049400 47.651 149 65 3 1 136 2 150 1.32e-32 121
MS.gene00362.t1 MTR_8g081000 30.804 224 150 3 63 284 81 301 8.45e-25 103
MS.gene00362.t1 MTR_8g081000 30.804 224 150 3 63 284 81 301 9.81e-25 103
MS.gene00362.t1 MTR_8g081000 30.804 224 150 3 63 284 81 301 1.30e-24 103
MS.gene00362.t1 MTR_8g080990 31.674 221 146 3 66 284 71 288 1.15e-21 94.7
MS.gene00362.t1 MTR_2g437090 32.749 171 63 3 213 331 1 171 1.22e-19 85.1
MS.gene00362.t1 MTR_2g436380 53.030 66 31 0 213 278 1 66 1.03e-16 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00362.t1 AT5G07900 32.119 302 182 7 4 283 15 315 3.07e-40 146
MS.gene00362.t1 AT1G21150 32.685 257 170 2 28 282 9 264 2.80e-37 137
MS.gene00362.t1 AT1G21150 33.878 245 159 2 40 282 57 300 3.19e-37 137
MS.gene00362.t1 AT1G21150 33.878 245 159 2 40 282 121 364 8.08e-37 137
MS.gene00362.t1 AT3G46950 32.534 292 182 7 11 296 20 302 1.04e-33 129
MS.gene00362.t1 AT1G61980 34.146 246 153 4 40 282 53 292 2.90e-33 127
MS.gene00362.t1 AT1G61980 34.146 246 153 4 40 282 53 292 2.90e-33 127
MS.gene00362.t1 AT1G61980 34.146 246 153 4 40 282 53 292 2.90e-33 127
MS.gene00362.t1 AT1G61970 32.917 240 150 5 37 272 50 282 5.18e-30 118
MS.gene00362.t1 AT1G61970 32.917 240 150 5 37 272 50 282 5.18e-30 118
MS.gene00362.t1 AT1G61970 32.917 240 150 5 37 272 50 282 5.18e-30 118
MS.gene00362.t1 AT1G61970 32.917 240 150 5 37 272 50 282 5.18e-30 118
MS.gene00362.t1 AT1G61970 32.917 240 150 5 37 272 50 282 5.18e-30 118
MS.gene00362.t1 AT1G61970 32.917 240 150 5 37 272 50 282 5.18e-30 118
MS.gene00362.t1 AT1G61970 32.917 240 150 5 37 272 50 282 5.18e-30 118
MS.gene00362.t1 AT1G62120 33.065 248 157 3 40 283 57 299 1.18e-29 118
MS.gene00362.t1 AT1G62110 31.984 247 159 3 40 282 53 294 6.48e-29 116
MS.gene00362.t1 AT1G61960 32.800 250 158 4 37 282 50 293 9.26e-29 115
MS.gene00362.t1 AT1G62150 31.200 250 163 3 37 282 56 300 1.49e-28 115
MS.gene00362.t1 AT1G61990 31.429 245 154 4 40 282 53 285 1.06e-27 112
MS.gene00362.t1 AT1G61990 31.429 245 154 4 40 282 53 285 1.06e-27 112
MS.gene00362.t1 AT1G62085 31.579 247 160 3 40 282 56 297 2.19e-26 109
MS.gene00362.t1 AT1G62085 31.579 247 160 3 40 282 56 297 2.19e-26 109
MS.gene00362.t1 AT5G23930 29.880 251 146 6 40 270 56 296 4.46e-20 90.9
MS.gene00362.t1 AT5G64950 27.132 258 183 4 31 284 31 287 5.50e-20 90.1
MS.gene00362.t1 AT1G62010 28.182 220 149 4 65 282 64 276 3.32e-17 82.4
MS.gene00362.t1 AT1G56380 26.667 255 150 8 42 280 19 252 7.21e-14 72.4
MS.gene00362.t1 AT1G56380 26.667 255 150 8 42 280 30 263 7.75e-14 72.4

Find 55 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTTGATGACTGATTT+TGG 0.089088 2.1:+55729590 MS.gene00362:CDS
GATCCTTCAATAGCTTCTTT+TGG 0.194910 2.1:+55729716 MS.gene00362:CDS
ATTGAACCAAACATTAAATT+AGG 0.196776 2.1:-55729854 None:intergenic
GAAGTCACCTATTTAGTTAA+TGG 0.200124 2.1:-55730187 None:intergenic
AAGCTACTTTGTAAAATTCT+AGG 0.214273 2.1:-55729434 None:intergenic
TTGGATGAAGTTAAGAGTTT+AGG 0.241873 2.1:+55729689 MS.gene00362:CDS
AAGTCAAAGCCATCTATATT+TGG 0.268618 2.1:+55729644 MS.gene00362:CDS
TGGATGAAGTTAAGAGTTTA+GGG 0.277888 2.1:+55729690 MS.gene00362:CDS
TGACATGCCATTAACTAAAT+AGG 0.287680 2.1:+55730180 MS.gene00362:CDS
AGACCAACCCCATTTCTTAA+AGG 0.303126 2.1:-55729798 None:intergenic
AAAGGATTTGATTAAGTCAT+TGG 0.323129 2.1:+55729670 MS.gene00362:CDS
AAGAAGTTGATAACTGAATC+AGG 0.337121 2.1:-55729251 None:intergenic
GCAGAGAATCGTATCCTTGC+TGG 0.340656 2.1:-55729507 None:intergenic
TCCTTTGAACCAAATATAGA+TGG 0.343999 2.1:-55729653 None:intergenic
AGTCAACCTAATTTAATGTT+TGG 0.349300 2.1:+55729848 MS.gene00362:CDS
AAGTTGATGCCTTTAAGAAA+TGG 0.366199 2.1:+55729789 MS.gene00362:CDS
AGTTGATGCCTTTAAGAAAT+GGG 0.371481 2.1:+55729790 MS.gene00362:CDS
AATTGATATTAGCCACAATA+AGG 0.389243 2.1:-55729574 None:intergenic
ATCAGATGAAGAAGCACCTT+TGG 0.404344 2.1:-55729387 None:intergenic
GTTTGAAGTGGTGGTGGTAG+TGG 0.410432 2.1:-55729132 None:intergenic
TTTCTTATAGTTTGGAGAAA+AGG 0.411421 2.1:+55729960 MS.gene00362:intron
GCCATCTATATTTGGTTCAA+AGG 0.418741 2.1:+55729652 MS.gene00362:CDS
TTCAATTGATAAGATTGATT+TGG 0.420866 2.1:+55729871 MS.gene00362:CDS
TCCTACCTCATCGACAAATT+CGG 0.422138 2.1:+55729167 MS.gene00362:CDS
TGAGGAATTTGAGAGAAAAT+AGG 0.422691 2.1:-55729109 None:intergenic
ATGAGGTAGGATAGGATGAA+TGG 0.467034 2.1:-55729155 None:intergenic
GAAGCTTTGAGTGCGCATTC+CGG 0.473335 2.1:-55729197 None:intergenic
AATTGCATCACTGAGGCCCT+TGG 0.480859 2.1:-55729989 None:intergenic
AGCTACTTTGTAAAATTCTA+GGG 0.484426 2.1:-55729433 None:intergenic
ATTGCATCACTGAGGCCCTT+GGG 0.486645 2.1:-55729988 None:intergenic
GAATGGGTTTGAAGTGGTGG+TGG 0.511641 2.1:-55729138 None:intergenic
TGAGGTAGGATAGGATGAAT+GGG 0.518984 2.1:-55729154 None:intergenic
ACCCCAAAAGAAGCTATTGA+AGG 0.524754 2.1:-55729719 None:intergenic
ATTAGCCACAATAAGGCGAT+AGG 0.536156 2.1:-55729567 None:intergenic
TGACTTAAGCAAACTAGCAA+TGG 0.563975 2.1:-55729627 None:intergenic
ATTTGTCGATGAGGTAGGAT+AGG 0.566398 2.1:-55729163 None:intergenic
GTTGATGCCTTTAAGAAATG+GGG 0.573670 2.1:+55729791 MS.gene00362:CDS
ATGCCTTTAAGAAATGGGGT+TGG 0.598819 2.1:+55729795 MS.gene00362:CDS
GATGAATGGGTTTGAAGTGG+TGG 0.604187 2.1:-55729141 None:intergenic
TAATCCCTATCGCCTTATTG+TGG 0.606797 2.1:+55729562 MS.gene00362:CDS
TTAGCCACAATAAGGCGATA+GGG 0.609256 2.1:-55729566 None:intergenic
TGGAGAAAAGGATCATCCCA+AGG 0.625434 2.1:+55729972 MS.gene00362:CDS
TAGGATGAATGGGTTTGAAG+TGG 0.637577 2.1:-55729144 None:intergenic
AATTTGAGAGAAAATAGGAA+AGG 0.640380 2.1:-55729104 None:intergenic
TCCGAATTTGTCGATGAGGT+AGG 0.646456 2.1:-55729168 None:intergenic
TGAATCCGAATTTGTCGATG+AGG 0.652980 2.1:-55729172 None:intergenic
AAGTGGTGGTGGTAGTGGTG+AGG 0.657250 2.1:-55729127 None:intergenic
ACATCATCAAAAGAGAACCA+TGG 0.657560 2.1:+55729309 MS.gene00362:CDS
TAGGTTCTTGAAATCCAGCA+AGG 0.657633 2.1:+55729493 MS.gene00362:CDS
GTATCGCAGGAAAGAAGCCA+TGG 0.666550 2.1:-55729326 None:intergenic
CGACAAATTCGGATTCACAC+CGG 0.671238 2.1:+55729178 MS.gene00362:CDS
AGTGAAACTTGCAAATACAA+CGG 0.688685 2.1:+55730150 MS.gene00362:CDS
GATGTTGAGAATATCTGAGT+CGG 0.696789 2.1:-55729291 None:intergenic
GGAGAAAAGGATCATCCCAA+GGG 0.698071 2.1:+55729973 MS.gene00362:CDS
CAAAAGAAATTGCATCACTG+AGG 0.724880 2.1:-55729996 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTGTTGAAAAATTT+AGG + chr2.1:55729825-55729844 MS.gene00362:CDS 10.0%
!! ATAGAAAAAATTGAAACTTT+GGG - chr2.1:55729367-55729386 None:intergenic 15.0%
!! TACTTAATAATTCAAAAAGA+GGG - chr2.1:55729475-55729494 None:intergenic 15.0%
!! AAACTATAAGAAAACATTTG+TGG - chr2.1:55729953-55729972 None:intergenic 20.0%
!! ATTGAACCAAACATTAAATT+AGG - chr2.1:55729857-55729876 None:intergenic 20.0%
!! CTACTTAATAATTCAAAAAG+AGG - chr2.1:55729476-55729495 None:intergenic 20.0%
!! GATAGAAAAAATTGAAACTT+TGG - chr2.1:55729368-55729387 None:intergenic 20.0%
!! TTCAATTGATAAGATTGATT+TGG + chr2.1:55729871-55729890 MS.gene00362:CDS 20.0%
!!! AAAGTTTGTTTTCAGATTTA+AGG + chr2.1:55730090-55730109 MS.gene00362:intron 20.0%
!!! ACAAATGTTTTCTTATAGTT+TGG + chr2.1:55729952-55729971 MS.gene00362:intron 20.0%
!!! ATTTTCTCAGAATAAGAAAA+TGG - chr2.1:55730061-55730080 None:intergenic 20.0%
!!! CTCTTTTTGAATTATTAAGT+AGG + chr2.1:55729474-55729493 MS.gene00362:CDS 20.0%
!!! GTTTGTGAAATAAAGTTTTT+TGG - chr2.1:55729222-55729241 None:intergenic 20.0%
!!! TTTCAATTTTTTCTATCCAA+AGG + chr2.1:55729371-55729390 MS.gene00362:CDS 20.0%
!!! TTTTTTACTCAAACATTTCT+TGG - chr2.1:55729756-55729775 None:intergenic 20.0%
! AAAGGATTTGATTAAGTCAT+TGG + chr2.1:55729670-55729689 MS.gene00362:CDS 25.0%
! AATGTTTGAGTAAAAAACGT+TGG + chr2.1:55729759-55729778 MS.gene00362:CDS 25.0%
! AATTGATATTAGCCACAATA+AGG - chr2.1:55729577-55729596 None:intergenic 25.0%
! AATTTGAGAGAAAATAGGAA+AGG - chr2.1:55729107-55729126 None:intergenic 25.0%
! AGTCAACCTAATTTAATGTT+TGG + chr2.1:55729848-55729867 MS.gene00362:CDS 25.0%
! ATCAACTTCTTCAAAAATCA+AGG + chr2.1:55729263-55729282 MS.gene00362:CDS 25.0%
! ATGTTTGAGTAAAAAACGTT+GGG + chr2.1:55729760-55729779 MS.gene00362:CDS 25.0%
! TTTCTTATAGTTTGGAGAAA+AGG + chr2.1:55729960-55729979 MS.gene00362:intron 25.0%
!! AAGCTACTTTGTAAAATTCT+AGG - chr2.1:55729437-55729456 None:intergenic 25.0%
!! AGCTACTTTGTAAAATTCTA+GGG - chr2.1:55729436-55729455 None:intergenic 25.0%
!! ATGCAATTTCTTTTGATGAA+AGG + chr2.1:55730004-55730023 MS.gene00362:CDS 25.0%
!! TAGAATTTTACAAAGTAGCT+TGG + chr2.1:55729436-55729455 MS.gene00362:CDS 25.0%
!!! ATCAATTTGATGACTGATTT+TGG + chr2.1:55729590-55729609 MS.gene00362:CDS 25.0%
!!! TATTTGCAAGTTTCACTTTT+TGG - chr2.1:55730147-55730166 None:intergenic 25.0%
AAGTCAAAGCCATCTATATT+TGG + chr2.1:55729644-55729663 MS.gene00362:CDS 30.0%
AGAAAACATTTGTGGTAGTT+TGG - chr2.1:55729945-55729964 None:intergenic 30.0%
AGTGAAACTTGCAAATACAA+CGG + chr2.1:55730150-55730169 MS.gene00362:CDS 30.0%
TCCTTTGAACCAAATATAGA+TGG - chr2.1:55729656-55729675 None:intergenic 30.0%
TGAGGAATTTGAGAGAAAAT+AGG - chr2.1:55729112-55729131 None:intergenic 30.0%
TGGATGAAGTTAAGAGTTTA+GGG + chr2.1:55729690-55729709 MS.gene00362:CDS 30.0%
TTGGATGAAGTTAAGAGTTT+AGG + chr2.1:55729689-55729708 MS.gene00362:CDS 30.0%
! AGTTGATGCCTTTAAGAAAT+GGG + chr2.1:55729790-55729809 MS.gene00362:CDS 30.0%
! ATCCTTCAATAGCTTCTTTT+GGG + chr2.1:55729717-55729736 MS.gene00362:CDS 30.0%
!! AAGAAGTTGATAACTGAATC+AGG - chr2.1:55729254-55729273 None:intergenic 30.0%
!! AAGTTGATGCCTTTAAGAAA+TGG + chr2.1:55729789-55729808 MS.gene00362:CDS 30.0%
!! GTTTGTTTTCAGATTTAAGG+AGG + chr2.1:55730093-55730112 MS.gene00362:intron 30.0%
!!! AGTTTTTGGGTCAATCAATT+GGG + chr2.1:55729899-55729918 MS.gene00362:intron 30.0%
!!! TGATTTGGTGATGAGTTTTT+GGG + chr2.1:55729886-55729905 MS.gene00362:intron 30.0%
!!! TTGATTTGGTGATGAGTTTT+TGG + chr2.1:55729885-55729904 MS.gene00362:intron 30.0%
ACATCATCAAAAGAGAACCA+TGG + chr2.1:55729309-55729328 MS.gene00362:CDS 35.0%
CAAAAGAAATTGCATCACTG+AGG - chr2.1:55729999-55730018 None:intergenic 35.0%
GATGTTGAGAATATCTGAGT+CGG - chr2.1:55729294-55729313 None:intergenic 35.0%
TGACTTAAGCAAACTAGCAA+TGG - chr2.1:55729630-55729649 None:intergenic 35.0%
! GATCCTTCAATAGCTTCTTT+TGG + chr2.1:55729716-55729735 MS.gene00362:CDS 35.0%
! GCCATCTATATTTGGTTCAA+AGG + chr2.1:55729652-55729671 MS.gene00362:CDS 35.0%
! GTTGATGCCTTTAAGAAATG+GGG + chr2.1:55729791-55729810 MS.gene00362:CDS 35.0%
! TCCTTCAATAGCTTCTTTTG+GGG + chr2.1:55729718-55729737 MS.gene00362:CDS 35.0%
!!! GAGTTTTTGGGTCAATCAAT+TGG + chr2.1:55729898-55729917 MS.gene00362:intron 35.0%
ACCCCAAAAGAAGCTATTGA+AGG - chr2.1:55729722-55729741 None:intergenic 40.0%
AGACCAACCCCATTTCTTAA+AGG - chr2.1:55729801-55729820 None:intergenic 40.0%
ATGAGGTAGGATAGGATGAA+TGG - chr2.1:55729158-55729177 None:intergenic 40.0%
ATTAGCCACAATAAGGCGAT+AGG - chr2.1:55729570-55729589 None:intergenic 40.0%
ATTTGTCGATGAGGTAGGAT+AGG - chr2.1:55729166-55729185 None:intergenic 40.0%
TAGGTTCTTGAAATCCAGCA+AGG + chr2.1:55729493-55729512 MS.gene00362:CDS 40.0%
TCCTACCTCATCGACAAATT+CGG + chr2.1:55729167-55729186 MS.gene00362:CDS 40.0%
TGAATCCGAATTTGTCGATG+AGG - chr2.1:55729175-55729194 None:intergenic 40.0%
TGAGGTAGGATAGGATGAAT+GGG - chr2.1:55729157-55729176 None:intergenic 40.0%
TGGTAGTTTGGTAAGTTCCA+AGG - chr2.1:55729933-55729952 None:intergenic 40.0%
TTAGCCACAATAAGGCGATA+GGG - chr2.1:55729569-55729588 None:intergenic 40.0%
TTTGGGTCAATCAATTGGGT+TGG + chr2.1:55729903-55729922 MS.gene00362:intron 40.0%
! ATGCCTTTAAGAAATGGGGT+TGG + chr2.1:55729795-55729814 MS.gene00362:CDS 40.0%
! TAATCCCTATCGCCTTATTG+TGG + chr2.1:55729562-55729581 MS.gene00362:CDS 40.0%
! TAGGATGAATGGGTTTGAAG+TGG - chr2.1:55729147-55729166 None:intergenic 40.0%
!! ACTTTGGGAGAATCGTTTTG+TGG - chr2.1:55729352-55729371 None:intergenic 40.0%
!! ATCAGATGAAGAAGCACCTT+TGG - chr2.1:55729390-55729409 None:intergenic 40.0%
!! CTTTGGGAGAATCGTTTTGT+GGG - chr2.1:55729351-55729370 None:intergenic 40.0%
!! TCAATTGGGTTGGAATTCCT+TGG + chr2.1:55729913-55729932 MS.gene00362:intron 40.0%
CGACAAATTCGGATTCACAC+CGG + chr2.1:55729178-55729197 MS.gene00362:CDS 45.0%
GGAGAAAAGGATCATCCCAA+GGG + chr2.1:55729973-55729992 MS.gene00362:CDS 45.0%
TCCGAATTTGTCGATGAGGT+AGG - chr2.1:55729171-55729190 None:intergenic 45.0%
TGGAGAAAAGGATCATCCCA+AGG + chr2.1:55729972-55729991 MS.gene00362:CDS 45.0%
! GATGAATGGGTTTGAAGTGG+TGG - chr2.1:55729144-55729163 None:intergenic 45.0%
!! AATCGTTTTGTGGGTATCGC+AGG - chr2.1:55729342-55729361 None:intergenic 45.0%
!!! AGCTTCTTTTGGGGTTGCTT+TGG + chr2.1:55729727-55729746 MS.gene00362:CDS 45.0%
AATTGCATCACTGAGGCCCT+TGG - chr2.1:55729992-55730011 None:intergenic 50.0%
ATTGCATCACTGAGGCCCTT+GGG - chr2.1:55729991-55730010 None:intergenic 50.0%
GCAGAGAATCGTATCCTTGC+TGG - chr2.1:55729510-55729529 None:intergenic 50.0%
GTATCGCAGGAAAGAAGCCA+TGG - chr2.1:55729329-55729348 None:intergenic 50.0%
! GAATGGGTTTGAAGTGGTGG+TGG - chr2.1:55729141-55729160 None:intergenic 50.0%
!! GAAGCTTTGAGTGCGCATTC+CGG - chr2.1:55729200-55729219 None:intergenic 50.0%
!! GTTTGAAGTGGTGGTGGTAG+TGG - chr2.1:55729135-55729154 None:intergenic 50.0%
!! AAGTGGTGGTGGTAGTGGTG+AGG - chr2.1:55729130-55729149 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 55729041 55730201 55729041 ID=MS.gene00362
chr2.1 mRNA 55729041 55730201 55729041 ID=MS.gene00362.t1;Parent=MS.gene00362
chr2.1 exon 55729041 55729892 55729041 ID=MS.gene00362.t1.exon1;Parent=MS.gene00362.t1
chr2.1 CDS 55729041 55729892 55729041 ID=cds.MS.gene00362.t1;Parent=MS.gene00362.t1
chr2.1 exon 55729970 55730025 55729970 ID=MS.gene00362.t1.exon2;Parent=MS.gene00362.t1
chr2.1 CDS 55729970 55730025 55729970 ID=cds.MS.gene00362.t1;Parent=MS.gene00362.t1
chr2.1 exon 55730105 55730201 55730105 ID=MS.gene00362.t1.exon3;Parent=MS.gene00362.t1
chr2.1 CDS 55730105 55730201 55730105 ID=cds.MS.gene00362.t1;Parent=MS.gene00362.t1
Gene Sequence

>MS.gene00362

ATGTTGAAAGCGTTTCTCTGCAAAAATGCATTTCGCATATCAACAACAACACTCTACAACGCACCTTTCCTATTTTCTCTCAAATTCCTCACCACTACCACCACCACTTCAAACCCATTCATCCTATCCTACCTCATCGACAAATTCGGATTCACACCGGAATGCGCACTCAAAGCTTCCAAAAAACTTTATTTCACAAACTCACAAAAACCTGATTCAGTTATCAACTTCTTCAAAAATCAAGGTTTCACCGACTCAGATATTCTCAACATCATCAAAAGAGAACCATGGCTTCTTTCCTGCGATACCCACAAAACGATTCTCCCAAAGTTTCAATTTTTTCTATCCAAAGGTGCTTCTTCATCTGATATTATTTCATTGTTAACTGCACACCCTAGAATTTTACAAAGTAGCTTGGAGAAACGAATAATCCCTCTTTTTGAATTATTAAGTAGGTTCTTGAAATCCAGCAAGGATACGATTCTCTGCTTAATTCGATATTCTGCTGCATTTACTATAAATAATCCCTATCGCCTTATTGTGGCTAATATCAATTTGATGACTGATTTTGGAGTTTCTGATAATGCCATTGCTAGTTTGCTTAAGTCAAAGCCATCTATATTTGGTTCAAAGGATTTGATTAAGTCATTGGATGAAGTTAAGAGTTTAGGGTTTGATCCTTCAATAGCTTCTTTTGGGGTTGCTTTGGCAGCCAAGAAATGTTTGAGTAAAAAACGTTGGGATGAGAAAGTTGATGCCTTTAAGAAATGGGGTTGGTCTGATGAAAATATTGTTGAAAAATTTAGGAGTCAACCTAATTTAATGTTTGGTTCAATTGATAAGATTGATTTGGTGATGAGTTTTTGGGTCAATCAATTGGGTTGGAATTCCTTGGAACTTACCAAACTACCACAAATGTTTTCTTATAGTTTGGAGAAAAGGATCATCCCAAGGGCCTCAGTGATGCAATTTCTTTTGATGAAAGGTTTGCGAAAAAAGAATGCAAGCTTTGTTCAACCATTTTCTTATTCTGAGAAAATGTTCTTGAGAAAGTTTGTTTTCAGATTTAAGGAGGAGTCTGATTATCTGTTGAAGCTATATGACCAAAAAGTGAAACTTGCAAATACAACGGAGAACATTGACATGCCATTAACTAAATAG
Protein sequence

>MS.gene00362.t1

MLKAFLCKNAFRISTTTLYNAPFLFSLKFLTTTTTTSNPFILSYLIDKFGFTPECALKASKKLYFTNSQKPDSVINFFKNQGFTDSDILNIIKREPWLLSCDTHKTILPKFQFFLSKGASSSDIISLLTAHPRILQSSLEKRIIPLFELLSRFLKSSKDTILCLIRYSAAFTINNPYRLIVANINLMTDFGVSDNAIASLLKSKPSIFGSKDLIKSLDEVKSLGFDPSIASFGVALAAKKCLSKKRWDEKVDAFKKWGWSDENIVEKFRSQPNLMFGSIDKIDLFGEKDHPKGLSDAISFDERFKEESDYLLKLYDQKVKLANTTENIDMPLTK