AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003636

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003636.t1 MTR_4g072090 94.208 518 14 6 1 514 1 506 0.0 969
MS.gene003636.t1 MTR_4g072090 93.363 452 15 5 1 449 1 440 0.0 836
MS.gene003636.t1 MTR_1g023690 47.131 488 177 16 47 484 46 502 2.93e-92 292
MS.gene003636.t1 MTR_3g467120 68.841 138 34 1 354 491 162 290 4.47e-49 173
MS.gene003636.t1 MTR_6g034945 52.074 217 92 6 288 501 76 283 1.25e-48 170
MS.gene003636.t1 MTR_5g075390 74.561 114 29 0 354 467 144 257 1.79e-48 171
MS.gene003636.t1 MTR_3g094020 63.768 138 42 1 330 467 77 206 5.52e-47 166
MS.gene003636.t1 MTR_2g099050 41.463 287 109 8 216 494 109 344 2.58e-46 167
MS.gene003636.t1 MTR_2g090900 49.474 95 48 0 367 461 189 283 4.68e-20 91.7
MS.gene003636.t1 MTR_2g090900 49.474 95 48 0 367 461 189 283 5.71e-20 91.7
MS.gene003636.t1 MTR_4g079500 37.410 139 64 2 323 461 171 286 1.20e-19 90.5
MS.gene003636.t1 MTR_0405s0060 77.193 57 13 0 344 400 99 155 2.06e-19 87.8
MS.gene003636.t1 MTR_1g099030 37.333 150 84 4 323 466 76 221 1.61e-14 74.3
MS.gene003636.t1 MTR_8g088650 37.705 122 70 2 340 461 206 321 7.51e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003636.t1 AT4G38900 57.443 524 137 25 11 490 31 512 6.95e-159 463
MS.gene003636.t1 AT4G38900 57.443 524 137 25 11 490 31 512 6.95e-159 463
MS.gene003636.t1 AT4G38900 56.792 530 137 26 11 490 31 518 3.29e-156 456
MS.gene003636.t1 AT2G21230 53.145 461 162 17 87 510 72 515 1.56e-124 374
MS.gene003636.t1 AT2G21230 53.145 461 162 17 87 510 72 515 1.56e-124 374
MS.gene003636.t1 AT2G21230 52.248 467 163 18 87 510 72 521 3.96e-121 365
MS.gene003636.t1 AT2G21230 54.660 397 130 16 87 450 72 451 8.38e-112 339
MS.gene003636.t1 AT2G40620 64.583 144 50 1 324 467 104 246 1.44e-49 174
MS.gene003636.t1 AT1G06850 66.418 134 43 1 340 471 117 250 1.20e-48 171
MS.gene003636.t1 AT2G31370 44.314 255 94 6 213 467 93 299 9.09e-48 170
MS.gene003636.t1 AT2G31370 44.314 255 94 6 213 467 93 299 1.32e-47 170
MS.gene003636.t1 AT2G31370 44.314 255 94 6 213 467 93 299 1.32e-47 170
MS.gene003636.t1 AT2G31370 44.314 255 94 6 213 467 93 299 1.32e-47 170
MS.gene003636.t1 AT2G31370 44.314 255 94 6 213 467 93 299 1.32e-47 170
MS.gene003636.t1 AT2G31370 44.314 255 94 6 213 467 93 299 1.32e-47 170
MS.gene003636.t1 AT2G31370 44.314 255 94 6 213 467 93 299 1.32e-47 170
MS.gene003636.t1 AT1G06070 66.412 131 42 1 344 472 185 315 8.48e-47 168
MS.gene003636.t1 AT1G43700 47.345 226 96 6 295 504 109 327 3.32e-46 165
MS.gene003636.t1 AT2G12940 42.623 183 97 3 281 463 68 242 1.63e-37 140
MS.gene003636.t1 AT2G13150 41.899 179 96 3 283 461 71 241 2.66e-37 138
MS.gene003636.t1 AT2G12900 40.714 140 75 1 333 464 72 211 7.54e-30 118
MS.gene003636.t1 AT1G06850 65.517 87 28 1 340 424 117 203 1.52e-25 105
MS.gene003636.t1 AT3G58120 48.421 95 49 0 367 461 200 294 4.05e-20 92.0
MS.gene003636.t1 AT2G42380 48.421 95 49 0 367 461 184 278 1.15e-19 90.5
MS.gene003636.t1 AT2G42380 47.619 84 44 0 367 450 184 267 9.64e-17 80.9
MS.gene003636.t1 AT3G58120 47.561 82 43 0 367 448 200 281 4.09e-16 79.3
MS.gene003636.t1 AT2G21235 37.107 159 80 4 306 461 309 450 6.22e-16 80.9
MS.gene003636.t1 AT2G42380 44.211 95 42 1 367 461 184 267 3.36e-14 73.9
MS.gene003636.t1 AT1G58110 42.857 84 48 0 378 461 238 321 7.60e-12 67.4
MS.gene003636.t1 AT1G58110 42.857 84 48 0 378 461 238 321 7.60e-12 67.4

Find 128 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGGTTATTTCAGGATAT+TGG 0.231921 4.1:-31176203 MS.gene003636:intron
TGCACAACTTACTTTGTTGC+AGG 0.290633 4.1:-31176077 MS.gene003636:intron
ATTTCAGGATATTGGCTAAT+AGG 0.291092 4.1:-31176195 MS.gene003636:intron
TGGTGAAAAGGGAAACAAAT+TGG 0.294655 4.1:-31176835 MS.gene003636:CDS
GGCATTTGCGGCCGTGAAAC+CGG 0.329642 4.1:+31177187 None:intergenic
GTTGATGTCACCTGGTAATT+CGG 0.335072 4.1:-31176429 MS.gene003636:CDS
GCTGATGCTGATGCTGTTGT+TGG 0.350776 4.1:+31173983 None:intergenic
TGCTGTTGTTGGAACATCAT+AGG 0.362730 4.1:+31173994 None:intergenic
GGAACTTCAACTCACTATTC+TGG 0.380487 4.1:+31175759 None:intergenic
TGGTGATAATCGCGATGATT+TGG 0.392741 4.1:-31176684 MS.gene003636:CDS
CTAATTCGTCTGTGGTGAAA+AGG 0.394202 4.1:-31176847 MS.gene003636:CDS
TTGAAGATGCCTCCTTCGCC+TGG 0.396610 4.1:-31176455 MS.gene003636:CDS
AAAGAATGAGTTAAAGCAAT+AGG 0.398703 4.1:-31173923 None:intergenic
ATCTGAGAGTAAGGTGAAAT+AGG 0.404620 4.1:+31177223 None:intergenic
TTGCTACAGCTGAGCTGAAT+GGG 0.408125 4.1:-31174062 MS.gene003636:CDS
GGGATCTGGTGTGGGTGAGA+TGG 0.410470 4.1:+31177247 None:intergenic
TCTAACAGTGATATTCCGTT+TGG 0.413476 4.1:-31176935 MS.gene003636:CDS
GCCGGAGTTGAAGAAAATTA+TGG 0.416398 4.1:-31176351 MS.gene003636:CDS
TTGATGTCACCTGGTAATTC+GGG 0.418606 4.1:-31176428 MS.gene003636:CDS
GAAGGGAATAAGAGAAGTGC+AGG 0.419487 4.1:-31176563 MS.gene003636:CDS
CCTGTTGTTCCATGGATTGA+AGG 0.422833 4.1:+31175735 None:intergenic
GATAGTATGCAGAGGAGGGA+AGG 0.429594 4.1:-31176581 MS.gene003636:CDS
CCTTCAATCCATGGAACAAC+AGG 0.431813 4.1:-31175735 MS.gene003636:CDS
CAGCACCTCTTAGCCCGCTT+CGG 0.433321 4.1:+31176293 None:intergenic
GTACTGTGCGACGGCATTTG+CGG 0.440995 4.1:+31177175 None:intergenic
CTTTAACTCATTCTTTGAGT+TGG 0.442907 4.1:+31173930 None:intergenic
ATCTGGTGTGGGTGAGATGG+TGG 0.449378 4.1:+31177250 None:intergenic
ACAACAAATGAACAATCATA+TGG 0.450801 4.1:-31177362 MS.gene003636:CDS
TGCGGAATCATGCAGTTAGA+AGG 0.459177 4.1:+31174030 None:intergenic
TTCGGGAATGGTGAGTTTAG+TGG 0.468448 4.1:-31176374 MS.gene003636:CDS
AGAGTAGTGTTAATGAGAGT+GGG 0.468643 4.1:-31176604 MS.gene003636:CDS
GTGGGGATAGTATGCAGAGG+AGG 0.468795 4.1:-31176586 MS.gene003636:CDS
AAGGTGAAATAGGTGGGATC+TGG 0.472913 4.1:+31177233 None:intergenic
GGTGAAAAGGGAAACAAATT+GGG 0.475168 4.1:-31176834 MS.gene003636:CDS
GAAGTTCCGCCTTCAATCCA+TGG 0.476046 4.1:-31175744 MS.gene003636:CDS
TCATCCACAACTTCACCTTC+CGG 0.477852 4.1:+31176773 None:intergenic
AGCAGAAATCAAAGAGGAAG+TGG 0.482492 4.1:-31177277 MS.gene003636:CDS
GAAGAAATCGTCGTTGTCGC+CGG 0.482957 4.1:-31176792 MS.gene003636:CDS
GAAATAGGTGGGATCTGGTG+TGG 0.483403 4.1:+31177238 None:intergenic
ATAGTATGCAGAGGAGGGAA+GGG 0.491140 4.1:-31176580 MS.gene003636:CDS
GAGAGTAGTGTTAATGAGAG+TGG 0.492697 4.1:-31176605 MS.gene003636:CDS
AAATAGGTGGGATCTGGTGT+GGG 0.492947 4.1:+31177239 None:intergenic
TGATTGTTCATCTGAGAGTA+AGG 0.496602 4.1:+31177214 None:intergenic
GGATCATGCTGACGTTTCCA+TGG 0.501467 4.1:-31177044 MS.gene003636:CDS
ATTGCTACAGCTGAGCTGAA+TGG 0.502115 4.1:-31174063 MS.gene003636:CDS
GCGAGTGGAACGAAGACTAA+TGG 0.504671 4.1:-31176653 MS.gene003636:CDS
TCACCTGGTAATTCGGGTGA+TGG 0.506440 4.1:-31176422 MS.gene003636:CDS
GCATTTGCGGCCGTGAAACC+GGG 0.507657 4.1:+31177188 None:intergenic
TAATTCGTCTGTGGTGAAAA+GGG 0.510411 4.1:-31176846 MS.gene003636:CDS
CGTTGATTCCGCTGAGAGGA+AGG 0.510892 4.1:-31176883 MS.gene003636:CDS
TGCTATGGCTGATCCGAAGC+GGG 0.511052 4.1:-31176306 MS.gene003636:CDS
TTTAGTTTGGAGTTCGGGAA+TGG 0.514273 4.1:-31176386 MS.gene003636:CDS
TGGGGATAGTATGCAGAGGA+GGG 0.518255 4.1:-31176585 MS.gene003636:CDS
TCGGGAATGGTGAGTTTAGT+GGG 0.525925 4.1:-31176373 MS.gene003636:CDS
CTGATCCGAAGCGGGCTAAG+AGG 0.529672 4.1:-31176298 MS.gene003636:intron
GGGAATAAGAGAAGTGCAGG+AGG 0.532585 4.1:-31176560 MS.gene003636:CDS
CCTGGAGGGTTGATGTCACC+TGG 0.533911 4.1:-31176437 MS.gene003636:CDS
CTGAACCTTGTGTTCTAGCT+CGG 0.538171 4.1:+31176129 None:intergenic
AGTGACGTCACGATCTTCCA+TGG 0.547547 4.1:+31177027 None:intergenic
TTCCCATCACCCGAATTACC+AGG 0.548352 4.1:+31176419 None:intergenic
AATCTTCAGTCTTTGAACTT+CGG 0.549225 4.1:+31174083 None:intergenic
CACCTGGTAATTCGGGTGAT+GGG 0.550364 4.1:-31176421 MS.gene003636:CDS
AGATGCCTCCTTCGCCTGGA+GGG 0.550640 4.1:-31176451 MS.gene003636:CDS
TTCATGGAAGATAGTGAACC+AGG 0.554485 4.1:-31177403 MS.gene003636:CDS
GAAGGGTTTCTAGCAGCAAA+CGG 0.555470 4.1:+31176986 None:intergenic
GCTGTTGTTGGAACATCATA+GGG 0.558278 4.1:+31173995 None:intergenic
CATCAACAACAGCAGCAGAA+TGG 0.558598 4.1:-31173958 MS.gene003636:CDS
GAAGATTCGCGAAACGTGCA+AGG 0.565171 4.1:+31177076 None:intergenic
GACATCAACCCTCCAGGCGA+AGG 0.565228 4.1:+31176443 None:intergenic
GAGTAGTGTTAATGAGAGTG+GGG 0.567227 4.1:-31176603 MS.gene003636:CDS
ACAATCAGATCCCGGTTTCA+CGG 0.567511 4.1:-31177198 MS.gene003636:CDS
CTAGCAGCAAACGGAGGCAA+CGG 0.571219 4.1:+31176995 None:intergenic
CCAGGTGACATCAACCCTCC+AGG 0.571668 4.1:+31176437 None:intergenic
TCGCGATGATTTGGACAGTA+GGG 0.575016 4.1:-31176675 MS.gene003636:CDS
GAATGGTGAGTTTAGTGGGC+CGG 0.577577 4.1:-31176369 MS.gene003636:CDS
ACATTATAGAAGTGTTTCGA+TGG 0.580671 4.1:-31176516 MS.gene003636:CDS
AAGATGCCTCCTTCGCCTGG+AGG 0.581524 4.1:-31176452 MS.gene003636:CDS
TGAGAGTAAGGTGAAATAGG+TGG 0.582251 4.1:+31177226 None:intergenic
CATTTCCGAGCTAGAACACA+AGG 0.584550 4.1:-31176134 MS.gene003636:CDS
GAGAGTAAGGTGAAATAGGT+GGG 0.588611 4.1:+31177227 None:intergenic
ATCAACCCTCCAGGCGAAGG+AGG 0.593463 4.1:+31176446 None:intergenic
ATCGCGATGATTTGGACAGT+AGG 0.595138 4.1:-31176676 MS.gene003636:CDS
CTTCTATAATGTCTCGTAGT+CGG 0.597005 4.1:+31176527 None:intergenic
AACGTGCAAGGGCTGAGAGG+CGG 0.597136 4.1:+31177088 None:intergenic
AGGGAAACAAATTGGGAACA+TGG 0.600397 4.1:-31176827 MS.gene003636:CDS
CTTCCTCTCAGCGGAATCAA+CGG 0.601600 4.1:+31176884 None:intergenic
AAAACAGTAGAAAATCCAAA+CGG 0.603502 4.1:+31176920 None:intergenic
AAATCGTCGTTGTCGCCGGA+AGG 0.604451 4.1:-31176788 MS.gene003636:CDS
TCAGATGAACAATCAGATCC+CGG 0.606363 4.1:-31177206 MS.gene003636:CDS
AGAGTGGGGATAGTATGCAG+AGG 0.609195 4.1:-31176589 MS.gene003636:CDS
GTCAGCATGATCCGACGTGG+AGG 0.611432 4.1:+31177054 None:intergenic
TTGGGAACATGGTAATGTAG+AGG 0.615840 4.1:-31176816 MS.gene003636:CDS
GATCGTGTGTGGGAAGGTGT+AGG 0.618822 4.1:+31177148 None:intergenic
GTTAGTAGCAGAAATCAAAG+AGG 0.620000 4.1:-31177283 MS.gene003636:CDS
CCGCCGTTGATTCCGCTGAG+AGG 0.624123 4.1:-31176887 MS.gene003636:CDS
AAAACTTGCTGAGATTGCTA+TGG 0.624523 4.1:-31176321 MS.gene003636:CDS
GATTGAAAGAAATACCATCT+CGG 0.625004 4.1:+31175705 None:intergenic
GTTGATTCCGCTGAGAGGAA+GGG 0.625282 4.1:-31176882 MS.gene003636:CDS
TGATGCATTAAACTGTGGTA+TGG 0.626444 4.1:+31177330 None:intergenic
GAGAGTGATCGTGTGTGGGA+AGG 0.627896 4.1:+31177142 None:intergenic
GATTTGGACAGTAGGGCGAG+TGG 0.629392 4.1:-31176668 MS.gene003636:CDS
TTGTCTAATAGCTCTGAATG+AGG 0.632805 4.1:-31174115 MS.gene003636:intron
GTTGAGAGAGTGATCGTGTG+TGG 0.632845 4.1:+31177137 None:intergenic
TGCTAAACCTAATTCGTCTG+TGG 0.633178 4.1:-31176855 MS.gene003636:CDS
TGTATGCAGAGAGATTCAGT+TGG 0.633937 4.1:-31175791 MS.gene003636:intron
TACCGCCGAGAAAATCTCAC+CGG 0.639423 4.1:-31176961 MS.gene003636:CDS
TGCTACAGCTGAGCTGAATG+GGG 0.641201 4.1:-31174061 MS.gene003636:CDS
TTCGGGTGATGGGAATTCCG+CGG 0.644154 4.1:-31176411 MS.gene003636:CDS
GTTGTTCCATGGATTGAAGG+CGG 0.649555 4.1:+31175738 None:intergenic
CGAAACGTGCAAGGGCTGAG+AGG 0.651618 4.1:+31177085 None:intergenic
GCAACTTCCCTTCCTCTCAG+CGG 0.652014 4.1:+31176875 None:intergenic
TTGCTATGGCTGATCCGAAG+CGG 0.654077 4.1:-31176307 MS.gene003636:CDS
GTAGGACTTGTACTGTGCGA+CGG 0.655457 4.1:+31177166 None:intergenic
TCGCGAATCTTCCTCCACGT+CGG 0.657479 4.1:-31177065 MS.gene003636:CDS
CAACAGGCAAAACTCCGAGA+TGG 0.660037 4.1:-31175719 MS.gene003636:intron
AAGTTGTGCAGAAAGTGTAG+TGG 0.665732 4.1:+31176090 None:intergenic
AAGATTCGCGAAACGTGCAA+GGG 0.666107 4.1:+31177077 None:intergenic
TTGAGAGAGTGATCGTGTGT+GGG 0.674945 4.1:+31177138 None:intergenic
GTCGCCGGAAGGTGAAGTTG+TGG 0.681642 4.1:-31176777 MS.gene003636:CDS
AGTGGAACGAAGACTAATGG+TGG 0.685995 4.1:-31176650 MS.gene003636:CDS
ATAGGGTTGACAGAATGTTG+CGG 0.688253 4.1:+31174012 None:intergenic
GAACTCCAAACTAAAAGCCG+CGG 0.690476 4.1:+31176394 None:intergenic
AACGTCAGCATGATCCGACG+TGG 0.690918 4.1:+31177051 None:intergenic
GAATATCACTGTTAGAACGC+CGG 0.693141 4.1:+31176942 None:intergenic
GGGTTTCTAGCAGCAAACGG+AGG 0.696020 4.1:+31176989 None:intergenic
TGTTTGATGAAAGATGAACC+TGG 0.706497 4.1:+31177385 None:intergenic
CCTCTCAGCGGAATCAACGG+CGG 0.721208 4.1:+31176887 None:intergenic
GATGATGATGCATTAAACTG+TGG 0.739610 4.1:+31177325 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAATTCAAATTAATATTA+AGG + chr4.1:31176401-31176420 None:intergenic 10.0%
!! AAATTAATATTAAGGAAAAC+TGG + chr4.1:31176393-31176412 None:intergenic 15.0%
!! ATTTGAACATGAATTAATAA+AGG + chr4.1:31176609-31176628 None:intergenic 15.0%
!! TTTGAACATGAATTAATAAA+GGG + chr4.1:31176608-31176627 None:intergenic 15.0%
!!! ATGTTTTTCTTTTTTTGAAT+CGG + chr4.1:31176280-31176299 None:intergenic 15.0%
!!! TCATAGAATTTTTAAAAATG+TGG - chr4.1:31175814-31175833 MS.gene003636:intron 15.0%
!! AAACATAATTAGCTATGTAA+AGG + chr4.1:31176922-31176941 None:intergenic 20.0%
!! AACCAAATAGATGTTATAAT+AGG + chr4.1:31176846-31176865 None:intergenic 20.0%
!! AATTCATGTTCAAATTTCTT+GGG - chr4.1:31176614-31176633 MS.gene003636:CDS 20.0%
!! AGATGTTATTAATGTAAGAA+GGG - chr4.1:31175745-31175764 MS.gene003636:CDS 20.0%
!! ATCCTATTATAACATCTATT+TGG - chr4.1:31176841-31176860 MS.gene003636:CDS 20.0%
!! TAATTCATGTTCAAATTTCT+TGG - chr4.1:31176613-31176632 MS.gene003636:CDS 20.0%
!! TAGATGTTATTAATGTAAGA+AGG - chr4.1:31175744-31175763 MS.gene003636:CDS 20.0%
!! TCTTACATTAATAACATCTA+TGG + chr4.1:31175744-31175763 None:intergenic 20.0%
!! TTATATTTACTGCTAAAGTT+TGG - chr4.1:31176084-31176103 MS.gene003636:CDS 20.0%
!! TTTAGTTAGTATTGTCAATA+TGG - chr4.1:31175073-31175092 MS.gene003636:intron 20.0%
!! TTTGTAGTTTCATAAAATCA+CGG - chr4.1:31176761-31176780 MS.gene003636:CDS 20.0%
!!! AAATCATGTTGATAATGTTT+TGG - chr4.1:31175434-31175453 MS.gene003636:intron 20.0%
!!! AATCATGTTGATAATGTTTT+GGG - chr4.1:31175435-31175454 MS.gene003636:intron 20.0%
!!! AATTTTTAAAAATGTGGTGA+GGG - chr4.1:31175820-31175839 MS.gene003636:intron 20.0%
!!! ATTTTGACTTGGATATTTTT+TGG - chr4.1:31175103-31175122 MS.gene003636:intron 20.0%
!!! CTATGAGAAAAATCATATTT+TGG - chr4.1:31176516-31176535 MS.gene003636:CDS 20.0%
!!! TTTCAATCTCTCATTTTTTA+AGG - chr4.1:31175643-31175662 MS.gene003636:intron 20.0%
!!! TTTTGACTTGGATATTTTTT+GGG - chr4.1:31175104-31175123 MS.gene003636:intron 20.0%
!!! TTTTTCTGCTTATATGAATT+TGG - chr4.1:31174577-31174596 MS.gene003636:intron 20.0%
! AAAACAGTAGAAAATCCAAA+CGG + chr4.1:31174407-31174426 None:intergenic 25.0%
! AAACAATTGAACATCAGTAA+TGG + chr4.1:31176578-31176597 None:intergenic 25.0%
! AATTAACGATGATAAAAACG+CGG - chr4.1:31174613-31174632 MS.gene003636:intron 25.0%
! ACAACAAATGAACAATCATA+TGG - chr4.1:31173962-31173981 MS.gene003636:CDS 25.0%
! ATGTTATTAATGTAAGAAGG+GGG - chr4.1:31175747-31175766 MS.gene003636:CDS 25.0%
! ATTCATGTTCAAATTTCTTG+GGG - chr4.1:31176615-31176634 MS.gene003636:CDS 25.0%
! GATGTTATTAATGTAAGAAG+GGG - chr4.1:31175746-31175765 MS.gene003636:CDS 25.0%
! TATGTTTGTAAGAGTTACTA+CGG - chr4.1:31176935-31176954 MS.gene003636:CDS 25.0%
!! TGCAACTCATTTTATGTTTA+TGG - chr4.1:31175686-31175705 MS.gene003636:intron 25.0%
!! TTGTTGTTGATGAGATATTA+TGG + chr4.1:31177081-31177100 None:intergenic 25.0%
!!! GAATTTTTAAAAATGTGGTG+AGG - chr4.1:31175819-31175838 MS.gene003636:intron 25.0%
!!! GATATTTTTTGGGTTATTTC+AGG - chr4.1:31175114-31175133 MS.gene003636:intron 25.0%
!!! TATTACAGCTTCTTTGTTTT+CGG - chr4.1:31175411-31175430 MS.gene003636:intron 25.0%
!!! TTTCGATGGATAGTTTTATT+GGG - chr4.1:31174822-31174841 MS.gene003636:intron 25.0%
AATCTTCAGTCTTTGAACTT+CGG + chr4.1:31177244-31177263 None:intergenic 30.0%
ATTCCGTTATTTACCTCAAA+AGG + chr4.1:31175955-31175974 None:intergenic 30.0%
CAAGTAACCTACATAAAGAA+AGG + chr4.1:31176670-31176689 None:intergenic 30.0%
CATTCATAATACAAGCAAGT+AGG + chr4.1:31175914-31175933 None:intergenic 30.0%
CGGAGAAAAACATAAAACAA+AGG + chr4.1:31176234-31176253 None:intergenic 30.0%
CTACTTGCTTGTATTATGAA+TGG - chr4.1:31175912-31175931 MS.gene003636:intron 30.0%
CTCTGCATACACAAAAAAAT+AGG + chr4.1:31175524-31175543 None:intergenic 30.0%
CTTTAACTCATTCTTTGAGT+TGG + chr4.1:31177397-31177416 None:intergenic 30.0%
CTTTCTTTATGTAGGTTACT+TGG - chr4.1:31176668-31176687 MS.gene003636:CDS 30.0%
GATTGAAAGAAATACCATCT+CGG + chr4.1:31175622-31175641 None:intergenic 30.0%
GTTAGTATTGTCAATATGGA+TGG - chr4.1:31175077-31175096 MS.gene003636:intron 30.0%
TAAGCCTTCATTTGATATTG+TGG - chr4.1:31175339-31175358 MS.gene003636:intron 30.0%
TTAACTTCAACTCACTATTC+TGG + chr4.1:31175466-31175485 None:intergenic 30.0%
TTCATAGTCATCTTGATTGA+CGG + chr4.1:31176814-31176833 None:intergenic 30.0%
! ATTTCAGGATATTGGCTAAT+AGG - chr4.1:31175129-31175148 MS.gene003636:intron 30.0%
! TTCATAGGAGTGTGTTAATT+AGG - chr4.1:31176127-31176146 MS.gene003636:CDS 30.0%
! TTTGGGTTATTTCAGGATAT+TGG - chr4.1:31175121-31175140 MS.gene003636:intron 30.0%
!! ACATTATAGAAGTGTTTCGA+TGG - chr4.1:31174808-31174827 MS.gene003636:intron 30.0%
!! TGTAGCTTTTTCCAAAATCA+CGG + chr4.1:31176740-31176759 None:intergenic 30.0%
!!! ATGGATGGTTAATTTTGACT+TGG - chr4.1:31175092-31175111 MS.gene003636:intron 30.0%
!!! GTTTCGATGGATAGTTTTAT+TGG - chr4.1:31174821-31174840 MS.gene003636:intron 30.0%
!!! TGTGAATGCATGTTTTAGTT+TGG - chr4.1:31175289-31175308 MS.gene003636:intron 30.0%
!!! TTTTTGGAAAAAAGCATCCT+GGG - chr4.1:31176958-31176977 MS.gene003636:CDS 30.0%
AAAGTTTGTATGACCAAGTG+TGG - chr4.1:31176344-31176363 MS.gene003636:CDS 35.0%
AATTTGGCATGCAGCAATTT+GGG - chr4.1:31175772-31175791 MS.gene003636:CDS 35.0%
ACACTTGGTCATACAAACTT+TGG + chr4.1:31176345-31176364 None:intergenic 35.0%
AGAGTAGTGTTAATGAGAGT+GGG - chr4.1:31174720-31174739 MS.gene003636:intron 35.0%
ATCTGAGAGTAAGGTGAAAT+AGG + chr4.1:31174104-31174123 None:intergenic 35.0%
ATGAAACTTCTAACCACACT+TGG + chr4.1:31176360-31176379 None:intergenic 35.0%
CTTCTATAATGTCTCGTAGT+CGG + chr4.1:31174800-31174819 None:intergenic 35.0%
GCTTGTATTATGAATGGAGT+TGG - chr4.1:31175918-31175937 MS.gene003636:intron 35.0%
GGTGAAAAGGGAAACAAATT+GGG - chr4.1:31174490-31174509 MS.gene003636:intron 35.0%
GGTTGTCTTCTTTGAACTTT+AGG - chr4.1:31176180-31176199 MS.gene003636:CDS 35.0%
GTTAGTAGCAGAAATCAAAG+AGG - chr4.1:31174041-31174060 MS.gene003636:CDS 35.0%
GTTGAAGTTAACACAATTGC+AGG - chr4.1:31175475-31175494 MS.gene003636:intron 35.0%
TAATTCGTCTGTGGTGAAAA+GGG - chr4.1:31174478-31174497 MS.gene003636:intron 35.0%
TAATTTGGCATGCAGCAATT+TGG - chr4.1:31175771-31175790 MS.gene003636:CDS 35.0%
TATCGTCAGTTTCAGCAAAA+GGG + chr4.1:31176889-31176908 None:intergenic 35.0%
TATGAAATGATCATGACAGC+CGG - chr4.1:31176540-31176559 MS.gene003636:CDS 35.0%
TCATTCAGAGCTATTAGACA+AGG + chr4.1:31177210-31177229 None:intergenic 35.0%
TCTAACAGTGATATTCCGTT+TGG - chr4.1:31174389-31174408 MS.gene003636:intron 35.0%
TGATGCATTAAACTGTGGTA+TGG + chr4.1:31173997-31174016 None:intergenic 35.0%
TGATTGTTCATCTGAGAGTA+AGG + chr4.1:31174113-31174132 None:intergenic 35.0%
TGGTGAAAAGGGAAACAAAT+TGG - chr4.1:31174489-31174508 MS.gene003636:intron 35.0%
TGTTTGATGAAAGATGAACC+TGG + chr4.1:31173942-31173961 None:intergenic 35.0%
TTAAGTCCTCTGTTTAGCAT+TGG - chr4.1:31176429-31176448 MS.gene003636:CDS 35.0%
! GATGATGATGCATTAAACTG+TGG + chr4.1:31174002-31174021 None:intergenic 35.0%
! GCCATAATTTTCTTCAACTC+CGG + chr4.1:31174977-31174996 None:intergenic 35.0%
! GTAAGAGTTACTACGGTTTT+TGG - chr4.1:31176942-31176961 MS.gene003636:CDS 35.0%
! TCTGTTTAGCATTGGAAGAT+GGG - chr4.1:31176437-31176456 MS.gene003636:CDS 35.0%
!! AAAACTTGCTGAGATTGCTA+TGG - chr4.1:31175003-31175022 MS.gene003636:intron 35.0%
!! AGGTGCATAACAGTTGTTTT+TGG - chr4.1:31176147-31176166 MS.gene003636:CDS 35.0%
!! TACTGCTAAAGTTTGGTGTT+TGG - chr4.1:31176091-31176110 MS.gene003636:CDS 35.0%
!! TTGTCTAATAGCTCTGAATG+AGG - chr4.1:31177209-31177228 MS.gene003636:CDS 35.0%
!!! CTATTTGGTTTTCCCTCAAA+TGG - chr4.1:31176856-31176875 MS.gene003636:CDS 35.0%
!!! GGTGCATAACAGTTGTTTTT+GGG - chr4.1:31176148-31176167 MS.gene003636:CDS 35.0%
!!! GTGCATAACAGTTGTTTTTG+GGG - chr4.1:31176149-31176168 MS.gene003636:CDS 35.0%
!!! GTTTTTGGAAAAAAGCATCC+TGG - chr4.1:31176957-31176976 MS.gene003636:CDS 35.0%
AAAGGGAAAACGTCCATTTG+AGG + chr4.1:31176872-31176891 None:intergenic 40.0%
AAGAATGTAGATCCCTGACA+TGG - chr4.1:31176317-31176336 MS.gene003636:CDS 40.0%
AAGGGAAAACGTCCATTTGA+GGG + chr4.1:31176871-31176890 None:intergenic 40.0%
ACAAACTTTGGTACCATGTC+AGG + chr4.1:31176333-31176352 None:intergenic 40.0%
ACAACTTACTTTGTTGCAGG+TGG - chr4.1:31175250-31175269 MS.gene003636:intron 40.0%
AGCAGAAATCAAAGAGGAAG+TGG - chr4.1:31174047-31174066 MS.gene003636:CDS 40.0%
AGGATAGCCATATCACTGTA+TGG + chr4.1:31176214-31176233 None:intergenic 40.0%
AGGGAAACAAATTGGGAACA+TGG - chr4.1:31174497-31174516 MS.gene003636:intron 40.0%
ATAGGGTTGACAGAATGTTG+CGG + chr4.1:31177315-31177334 None:intergenic 40.0%
ATGAAATGATCATGACAGCC+GGG - chr4.1:31176541-31176560 MS.gene003636:CDS 40.0%
ATGTAAGAAGGGGGCTAATT+TGG - chr4.1:31175756-31175775 MS.gene003636:CDS 40.0%
CAAACTTTGGTACCATGTCA+GGG + chr4.1:31176332-31176351 None:intergenic 40.0%
CAACTTACTTTGTTGCAGGT+GGG - chr4.1:31175251-31175270 MS.gene003636:intron 40.0%
CAGGTAGCCTTTCTTTATGT+AGG - chr4.1:31176660-31176679 MS.gene003636:CDS 40.0%
CAGTGAGATTGGCAGAATTA+CGG - chr4.1:31176707-31176726 MS.gene003636:CDS 40.0%
CATCTTCCAATGCTAAACAG+AGG + chr4.1:31176438-31176457 None:intergenic 40.0%
CATGTTCAAATTTCTTGGGG+AGG - chr4.1:31176618-31176637 MS.gene003636:CDS 40.0%
CCTAGGTAATATCTTGAGTC+AGG - chr4.1:31176641-31176660 MS.gene003636:CDS 40.0%
CCTGACTCAAGATATTACCT+AGG + chr4.1:31176644-31176663 None:intergenic 40.0%
CTAATTCGTCTGTGGTGAAA+AGG - chr4.1:31174477-31174496 MS.gene003636:intron 40.0%
GAAAGTAGATGCTGAGTAGT+TGG - chr4.1:31176980-31176999 MS.gene003636:CDS 40.0%
GAATATCACTGTTAGAACGC+CGG + chr4.1:31174385-31174404 None:intergenic 40.0%
GAGAGTAAGGTGAAATAGGT+GGG + chr4.1:31174100-31174119 None:intergenic 40.0%
GAGAGTAGTGTTAATGAGAG+TGG - chr4.1:31174719-31174738 MS.gene003636:intron 40.0%
GAGTAGTGTTAATGAGAGTG+GGG - chr4.1:31174721-31174740 MS.gene003636:intron 40.0%
GCCGGAGTTGAAGAAAATTA+TGG - chr4.1:31174973-31174992 MS.gene003636:intron 40.0%
GCTGTTGTTGGAACATCATA+GGG + chr4.1:31177332-31177351 None:intergenic 40.0%
GGAACTTCAACTCACTATTC+TGG + chr4.1:31175568-31175587 None:intergenic 40.0%
GTATCGTCAGTTTCAGCAAA+AGG + chr4.1:31176890-31176909 None:intergenic 40.0%
GTTGATGTCACCTGGTAATT+CGG - chr4.1:31174895-31174914 MS.gene003636:intron 40.0%
GTTTGGATCAACAGTGAGAT+TGG - chr4.1:31176696-31176715 MS.gene003636:CDS 40.0%
TCAGATGAACAATCAGATCC+CGG - chr4.1:31174118-31174137 MS.gene003636:intron 40.0%
TGAGAGTAAGGTGAAATAGG+TGG + chr4.1:31174101-31174120 None:intergenic 40.0%
TGCACAACTTACTTTGTTGC+AGG - chr4.1:31175247-31175266 MS.gene003636:intron 40.0%
TGCTAAACCTAATTCGTCTG+TGG - chr4.1:31174469-31174488 MS.gene003636:intron 40.0%
TGCTGTTGTTGGAACATCAT+AGG + chr4.1:31177333-31177352 None:intergenic 40.0%
TGGTGATAATCGCGATGATT+TGG - chr4.1:31174640-31174659 MS.gene003636:intron 40.0%
TGTATGCAGAGAGATTCAGT+TGG - chr4.1:31175533-31175552 MS.gene003636:intron 40.0%
TTGATGTCACCTGGTAATTC+GGG - chr4.1:31174896-31174915 MS.gene003636:intron 40.0%
! AAGTTGTGCAGAAAGTGTAG+TGG + chr4.1:31175237-31175256 None:intergenic 40.0%
! ATTTTCTCGGCGGTAAAGAA+GGG + chr4.1:31174358-31174377 None:intergenic 40.0%
! CGCGTTTTGTAAAATTGTGG+TGG - chr4.1:31175362-31175381 MS.gene003636:intron 40.0%
! CTCTGTTTAGCATTGGAAGA+TGG - chr4.1:31176436-31176455 MS.gene003636:CDS 40.0%
! CTTTTCACCACAGACGAATT+AGG + chr4.1:31174479-31174498 None:intergenic 40.0%
! GTAATGGAATCAGTAAACCC+CGG + chr4.1:31176562-31176581 None:intergenic 40.0%
! TGGCGCGTTTTGTAAAATTG+TGG - chr4.1:31175359-31175378 MS.gene003636:intron 40.0%
! TTGGGAACATGGTAATGTAG+AGG - chr4.1:31174508-31174527 MS.gene003636:intron 40.0%
!! TAAAGTTTGGTGTTTGGCCA+AGG - chr4.1:31176097-31176116 MS.gene003636:CDS 40.0%
!! TAGGTTACTTGGTGCATGTT+TGG - chr4.1:31176679-31176698 MS.gene003636:CDS 40.0%
!! TTTAGTTTGGAGTTCGGGAA+TGG - chr4.1:31174938-31174957 MS.gene003636:intron 40.0%
!!! GGGCCTTTTGAGGTAAATAA+CGG - chr4.1:31175949-31175968 MS.gene003636:intron 40.0%
AAATAGGTGGGATCTGGTGT+GGG + chr4.1:31174088-31174107 None:intergenic 45.0%
AAGATTCGCGAAACGTGCAA+GGG + chr4.1:31174250-31174269 None:intergenic 45.0%
AAGGTGAAATAGGTGGGATC+TGG + chr4.1:31174094-31174113 None:intergenic 45.0%
ACAATCAGATCCCGGTTTCA+CGG - chr4.1:31174126-31174145 MS.gene003636:intron 45.0%
AGCAGGAAGGCTCTCTAATT+GGG - chr4.1:31175982-31176001 MS.gene003636:intron 45.0%
AGTGGAACGAAGACTAATGG+TGG - chr4.1:31174674-31174693 MS.gene003636:intron 45.0%
ATAGTATGCAGAGGAGGGAA+GGG - chr4.1:31174744-31174763 MS.gene003636:intron 45.0%
ATCTTGATTGACGGTGAGTC+CGG + chr4.1:31176805-31176824 None:intergenic 45.0%
ATGAATGGAGTTGGAATCCG+AGG - chr4.1:31175927-31175946 MS.gene003636:intron 45.0%
ATTGCTACAGCTGAGCTGAA+TGG - chr4.1:31177261-31177280 MS.gene003636:CDS 45.0%
ATTTACCTCAAAAGGCCCCT+CGG + chr4.1:31175947-31175966 None:intergenic 45.0%
CAACCCACACAAGACGTAAT+AGG + chr4.1:31176257-31176276 None:intergenic 45.0%
CATCAACAACAGCAGCAGAA+TGG - chr4.1:31177366-31177385 MS.gene003636:CDS 45.0%
CATTTCCGAGCTAGAACACA+AGG - chr4.1:31175190-31175209 MS.gene003636:intron 45.0%
CCTTCAATCCATGGAACAAC+AGG - chr4.1:31175589-31175608 MS.gene003636:intron 45.0%
CGCGCCACAATATCAAATGA+AGG + chr4.1:31175346-31175365 None:intergenic 45.0%
CTTGGAGATGGAGTTTGGTT+AGG - chr4.1:31175879-31175898 MS.gene003636:intron 45.0%
GAACTCCAAACTAAAAGCCG+CGG + chr4.1:31174933-31174952 None:intergenic 45.0%
GAGTCGAGCGAGAAAAAAGA+CGG + chr4.1:31174212-31174231 None:intergenic 45.0%
GATGATAAAAACGCGGCTAC+TGG - chr4.1:31174620-31174639 MS.gene003636:intron 45.0%
GCTGCTACCATACAGTGATA+TGG - chr4.1:31176204-31176223 MS.gene003636:intron 45.0%
TACTCAGCATCTACTTTCCC+AGG + chr4.1:31176978-31176997 None:intergenic 45.0%
TCATCCACAACTTCACCTTC+CGG + chr4.1:31174554-31174573 None:intergenic 45.0%
TCGGGAATGGTGAGTTTAGT+GGG - chr4.1:31174951-31174970 MS.gene003636:intron 45.0%
TGAAATGATCATGACAGCCG+GGG - chr4.1:31176542-31176561 MS.gene003636:CDS 45.0%
TGAATGGAGTTGGAATCCGA+GGG - chr4.1:31175928-31175947 MS.gene003636:intron 45.0%
TGCGGAATCATGCAGTTAGA+AGG + chr4.1:31177297-31177316 None:intergenic 45.0%
TTCGGGAATGGTGAGTTTAG+TGG - chr4.1:31174950-31174969 MS.gene003636:intron 45.0%
TTGAGAGAGTGATCGTGTGT+GGG + chr4.1:31174189-31174208 None:intergenic 45.0%
TTGCTACAGCTGAGCTGAAT+GGG - chr4.1:31177262-31177281 MS.gene003636:CDS 45.0%
! ACGAAATCAAGGTGCTAGCT+TGG - chr4.1:31175861-31175880 MS.gene003636:intron 45.0%
! ACGGTAGTCTACCGTGATTT+TGG - chr4.1:31176726-31176745 MS.gene003636:CDS 45.0%
! ATAACGGAATCTAGAGCAGC+AGG - chr4.1:31175965-31175984 MS.gene003636:intron 45.0%
! ATCGCGATGATTTGGACAGT+AGG - chr4.1:31174648-31174667 MS.gene003636:intron 45.0%
! CCTGTTGTTCCATGGATTGA+AGG + chr4.1:31175592-31175611 None:intergenic 45.0%
! CTGAACCTTGTGTTCTAGCT+CGG + chr4.1:31175198-31175217 None:intergenic 45.0%
! GAAGGGAATAAGAGAAGTGC+AGG - chr4.1:31174761-31174780 MS.gene003636:intron 45.0%
! GAGTTTTGCCTGTTGTTCCA+TGG + chr4.1:31175600-31175619 None:intergenic 45.0%
! GATTTTCTCGGCGGTAAAGA+AGG + chr4.1:31174359-31174378 None:intergenic 45.0%
! GTATCGCATTTTGCGCTCTT+TGG + chr4.1:31175171-31175190 None:intergenic 45.0%
! GTTGTTCCATGGATTGAAGG+CGG + chr4.1:31175589-31175608 None:intergenic 45.0%
! TCGCGATGATTTGGACAGTA+GGG - chr4.1:31174649-31174668 MS.gene003636:intron 45.0%
!! AGCATTGGAAGATGGGTTGT+AGG - chr4.1:31176444-31176463 MS.gene003636:CDS 45.0%
!! CGAGATAGTGGACGAAATCA+AGG - chr4.1:31175850-31175869 MS.gene003636:intron 45.0%
!! GAAGGGTTTCTAGCAGCAAA+CGG + chr4.1:31174341-31174360 None:intergenic 45.0%
!! GAATTCCGCGGCTTTTAGTT+TGG - chr4.1:31174925-31174944 MS.gene003636:intron 45.0%
!!! CGGCTTTTAGTTTGGAGTTC+GGG - chr4.1:31174933-31174952 MS.gene003636:intron 45.0%
!!! GCGGCTTTTAGTTTGGAGTT+CGG - chr4.1:31174932-31174951 MS.gene003636:intron 45.0%
!!! GTTGTTTTTGGGGAGTCTCT+TGG - chr4.1:31176159-31176178 MS.gene003636:CDS 45.0%
AAGGCTCTCTAATTGGGTCG+CGG - chr4.1:31175988-31176007 MS.gene003636:intron 50.0%
AGAGTGGGGATAGTATGCAG+AGG - chr4.1:31174735-31174754 MS.gene003636:intron 50.0%
AGTGACGTCACGATCTTCCA+TGG + chr4.1:31174300-31174319 None:intergenic 50.0%
CAAATTTCTTGGGGAGGCCT+AGG - chr4.1:31176624-31176643 MS.gene003636:CDS 50.0%
CAACAGGCAAAACTCCGAGA+TGG - chr4.1:31175605-31175624 MS.gene003636:intron 50.0%
CACCTGGTAATTCGGGTGAT+GGG - chr4.1:31174903-31174922 MS.gene003636:intron 50.0%
CAGCAGGAAGGCTCTCTAAT+TGG - chr4.1:31175981-31176000 MS.gene003636:intron 50.0%
CCCACACAAGACGTAATAGG+CGG + chr4.1:31176254-31176273 None:intergenic 50.0%
CCGCCTATTACGTCTTGTGT+GGG - chr4.1:31176251-31176270 MS.gene003636:intron 50.0%
CTTCCTCTCAGCGGAATCAA+CGG + chr4.1:31174443-31174462 None:intergenic 50.0%
GAAATAGGTGGGATCTGGTG+TGG + chr4.1:31174089-31174108 None:intergenic 50.0%
GAAGAAATCGTCGTTGTCGC+CGG - chr4.1:31174532-31174551 MS.gene003636:intron 50.0%
GAAGATTCGCGAAACGTGCA+AGG + chr4.1:31174251-31174270 None:intergenic 50.0%
GAAGTTCCGCCTTCAATCCA+TGG - chr4.1:31175580-31175599 MS.gene003636:intron 50.0%
GAATGGAGTTGGAATCCGAG+GGG - chr4.1:31175929-31175948 MS.gene003636:intron 50.0%
GAGGGATGTAGACGAGATAG+TGG - chr4.1:31175838-31175857 MS.gene003636:intron 50.0%
GATAGTATGCAGAGGAGGGA+AGG - chr4.1:31174743-31174762 MS.gene003636:intron 50.0%
GCGAGTGGAACGAAGACTAA+TGG - chr4.1:31174671-31174690 MS.gene003636:intron 50.0%
GCTGATGCTGATGCTGTTGT+TGG + chr4.1:31177344-31177363 None:intergenic 50.0%
GGATCATGCTGACGTTTCCA+TGG - chr4.1:31174280-31174299 MS.gene003636:intron 50.0%
GTAGGACTTGTACTGTGCGA+CGG + chr4.1:31174161-31174180 None:intergenic 50.0%
GTGAGTCCGGCAACAAATCA+TGG + chr4.1:31176792-31176811 None:intergenic 50.0%
GTTGAGAGAGTGATCGTGTG+TGG + chr4.1:31174190-31174209 None:intergenic 50.0%
TACCGCCGAGAAAATCTCAC+CGG - chr4.1:31174363-31174382 MS.gene003636:intron 50.0%
TCACCTGGTAATTCGGGTGA+TGG - chr4.1:31174902-31174921 MS.gene003636:intron 50.0%
TCCGCCTATTACGTCTTGTG+TGG - chr4.1:31176250-31176269 MS.gene003636:intron 50.0%
TGCTACAGCTGAGCTGAATG+GGG - chr4.1:31177263-31177282 MS.gene003636:CDS 50.0%
TGGGGATAGTATGCAGAGGA+GGG - chr4.1:31174739-31174758 MS.gene003636:intron 50.0%
TTCCCATCACCCGAATTACC+AGG + chr4.1:31174908-31174927 None:intergenic 50.0%
TTGCTATGGCTGATCCGAAG+CGG - chr4.1:31175017-31175036 MS.gene003636:intron 50.0%
! GAACGCCGGTGAGATTTTCT+CGG + chr4.1:31174371-31174390 None:intergenic 50.0%
! GAATGGTGAGTTTAGTGGGC+CGG - chr4.1:31174955-31174974 MS.gene003636:intron 50.0%
! GCTAGCTTGGAGATGGAGTT+TGG - chr4.1:31175874-31175893 MS.gene003636:intron 50.0%
! GGGAATAAGAGAAGTGCAGG+AGG - chr4.1:31174764-31174783 MS.gene003636:intron 50.0%
! GTTGATTCCGCTGAGAGGAA+GGG - chr4.1:31174442-31174461 MS.gene003636:intron 50.0%
! TCAAGGTGCTAGCTTGGAGA+TGG - chr4.1:31175867-31175886 MS.gene003636:intron 50.0%
! TGTGTTTGCTGCTGCCAGTA+GGG - chr4.1:31176046-31176065 MS.gene003636:intron 50.0%
!! AGTTTGGTGTTTGGCCAAGG+CGG - chr4.1:31176100-31176119 MS.gene003636:CDS 50.0%
!! GTGCTGCCATGATTTGTTGC+CGG - chr4.1:31176783-31176802 MS.gene003636:CDS 50.0%
AAATCGTCGTTGTCGCCGGA+AGG - chr4.1:31174536-31174555 MS.gene003636:intron 55.0%
AACGTCAGCATGATCCGACG+TGG + chr4.1:31174276-31174295 None:intergenic 55.0%
ATCTGGTGTGGGTGAGATGG+TGG + chr4.1:31174077-31174096 None:intergenic 55.0%
CTAGCAGCAAACGGAGGCAA+CGG + chr4.1:31174332-31174351 None:intergenic 55.0%
CTCCTATGAACGTACCGCCT+TGG + chr4.1:31176117-31176136 None:intergenic 55.0%
GAGAGTGATCGTGTGTGGGA+AGG + chr4.1:31174185-31174204 None:intergenic 55.0%
GATTTGGACAGTAGGGCGAG+TGG - chr4.1:31174656-31174675 MS.gene003636:intron 55.0%
GCAACTTCCCTTCCTCTCAG+CGG + chr4.1:31174452-31174471 None:intergenic 55.0%
GTACTGTGCGACGGCATTTG+CGG + chr4.1:31174152-31174171 None:intergenic 55.0%
GTGGGGATAGTATGCAGAGG+AGG - chr4.1:31174738-31174757 MS.gene003636:intron 55.0%
TCGCGAATCTTCCTCCACGT+CGG - chr4.1:31174259-31174278 MS.gene003636:intron 55.0%
TGCTATGGCTGATCCGAAGC+GGG - chr4.1:31175018-31175037 MS.gene003636:intron 55.0%
TTGAAGATGCCTCCTTCGCC+TGG - chr4.1:31174869-31174888 MS.gene003636:intron 55.0%
! CGGAATCTAGAGCAGCAGGA+AGG - chr4.1:31175969-31175988 MS.gene003636:intron 55.0%
! CTGTGTTTGCTGCTGCCAGT+AGG - chr4.1:31176045-31176064 MS.gene003636:intron 55.0%
! GATCGTGTGTGGGAAGGTGT+AGG + chr4.1:31174179-31174198 None:intergenic 55.0%
! GTGTTTGCTGCTGCCAGTAG+GGG - chr4.1:31176047-31176066 MS.gene003636:intron 55.0%
!! CGTTGATTCCGCTGAGAGGA+AGG - chr4.1:31174441-31174460 MS.gene003636:intron 55.0%
!! GGGTTTCTAGCAGCAAACGG+AGG + chr4.1:31174338-31174357 None:intergenic 55.0%
!! TTCGGGTGATGGGAATTCCG+CGG - chr4.1:31174913-31174932 MS.gene003636:intron 55.0%
!!! GGGTCGCGGTGCAGTTTTTT+TGG - chr4.1:31176002-31176021 MS.gene003636:intron 55.0%
AACGTGCAAGGGCTGAGAGG+CGG + chr4.1:31174239-31174258 None:intergenic 60.0%
AAGATGCCTCCTTCGCCTGG+AGG - chr4.1:31174872-31174891 MS.gene003636:intron 60.0%
AGATGCCTCCTTCGCCTGGA+GGG - chr4.1:31174873-31174892 MS.gene003636:intron 60.0%
ATCAACCCTCCAGGCGAAGG+AGG + chr4.1:31174881-31174900 None:intergenic 60.0%
CAGCACCTCTTAGCCCGCTT+CGG + chr4.1:31175034-31175053 None:intergenic 60.0%
CCAGGTGACATCAACCCTCC+AGG + chr4.1:31174890-31174909 None:intergenic 60.0%
CCTCTCAGCGGAATCAACGG+CGG + chr4.1:31174440-31174459 None:intergenic 60.0%
CGAAACGTGCAAGGGCTGAG+AGG + chr4.1:31174242-31174261 None:intergenic 60.0%
GACATCAACCCTCCAGGCGA+AGG + chr4.1:31174884-31174903 None:intergenic 60.0%
GCATTTGCGGCCGTGAAACC+GGG + chr4.1:31174139-31174158 None:intergenic 60.0%
GGCATTTGCGGCCGTGAAAC+CGG + chr4.1:31174140-31174159 None:intergenic 60.0%
GGCCAAGGCGGTACGTTCAT+AGG - chr4.1:31176112-31176131 MS.gene003636:CDS 60.0%
GGGATCTGGTGTGGGTGAGA+TGG + chr4.1:31174080-31174099 None:intergenic 60.0%
GTCAGCATGATCCGACGTGG+AGG + chr4.1:31174273-31174292 None:intergenic 60.0%
GTCGCCGGAAGGTGAAGTTG+TGG - chr4.1:31174547-31174566 MS.gene003636:intron 60.0%
! CGCCGGTGAGATTTTCTCGG+CGG + chr4.1:31174368-31174387 None:intergenic 60.0%
! GGAATCCGAGGGGCCTTTTG+AGG - chr4.1:31175939-31175958 MS.gene003636:intron 60.0%
!! CCTGGAGGGTTGATGTCACC+TGG - chr4.1:31174887-31174906 MS.gene003636:intron 60.0%
!! CTGATCCGAAGCGGGCTAAG+AGG - chr4.1:31175026-31175045 MS.gene003636:intron 60.0%
CCAGCACAGACAGCCCCTAC+TGG + chr4.1:31176063-31176082 None:intergenic 65.0%
CCAGTAGGGGCTGTCTGTGC+TGG - chr4.1:31176060-31176079 MS.gene003636:intron 65.0%
!! CCGCCGTTGATTCCGCTGAG+AGG - chr4.1:31174437-31174456 MS.gene003636:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 31173924 31177422 31173924 ID=MS.gene003636
chr4.1 mRNA 31173924 31177422 31173924 ID=MS.gene003636.t1;Parent=MS.gene003636
chr4.1 exon 31176299 31177422 31176299 ID=MS.gene003636.t1.exon1;Parent=MS.gene003636.t1
chr4.1 CDS 31176299 31177422 31176299 ID=cds.MS.gene003636.t1;Parent=MS.gene003636.t1
chr4.1 exon 31176078 31176210 31176078 ID=MS.gene003636.t1.exon2;Parent=MS.gene003636.t1
chr4.1 CDS 31176078 31176210 31176078 ID=cds.MS.gene003636.t1;Parent=MS.gene003636.t1
chr4.1 exon 31175720 31175804 31175720 ID=MS.gene003636.t1.exon3;Parent=MS.gene003636.t1
chr4.1 CDS 31175720 31175804 31175720 ID=cds.MS.gene003636.t1;Parent=MS.gene003636.t1
chr4.1 exon 31173924 31174126 31173924 ID=MS.gene003636.t1.exon4;Parent=MS.gene003636.t1
chr4.1 CDS 31173924 31174126 31173924 ID=cds.MS.gene003636.t1;Parent=MS.gene003636.t1
Gene Sequence

>MS.gene003636

ATGGAAGATAGTGAACCAGGTTCATCTTTCATCAAACAACAACAAATGAACAATCATATGGAACAATTAACCATACCACAGTTTAATGCATCATCATCACAATCACAAATGCGAACTGTTAGTAGCAGAAATCAAAGAGGAAGTGGTATACCACCATCTCACCCACACCAGATCCCACCTATTTCACCTTACTCTCAGATGAACAATCAGATCCCGGTTTCACGGCCGCAAATGCCGTCGCACAGTACAAGTCCTACACCTTCCCACACACGATCACTCTCTCAACCGTCTTTTTTCTCGCTCGACTCTCTTCCGCCTCTCAGCCCTTGCACGTTTCGCGAATCTTCCTCCACGTCGGATCATGCTGACGTTTCCATGGAAGATCGTGACGTCACTTCTCATTCTCCGTTGCCTCCGTTTGCTGCTAGAAACCCTTCTTTACCGCCGAGAAAATCTCACCGGCGTTCTAACAGTGATATTCCGTTTGGATTTTCTACTGTTTTGCAGTCTTCGCCGCCGTTGATTCCGCTGAGAGGAAGGGAAGTTGCTAAACCTAATTCGTCTGTGGTGAAAAGGGAAACAAATTGGGAACATGGTAATGTAGAGGAGAAGAAATCGTCGTTGTCGCCGGAAGGTGAAGTTGTGGATGATCTTTTTTCTGCTTATATGAATTTGGATAACATTGATGCAATTAACGATGATAAAAACGCGGCTACTGGTGATAATCGCGATGATTTGGACAGTAGGGCGAGTGGAACGAAGACTAATGGTGGTGATAGTAGTGATAATGAAGCTGAGAGTAGTGTTAATGAGAGTGGGGATAGTATGCAGAGGAGGGAAGGGAATAAGAGAAGTGCAGGAGGTGATATTGCACCGACTACGAGACATTATAGAAGTGTTTCGATGGATAGTTTTATTGGGAAGTTGAATTTCAATGACGAGTCTTTGAAGATGCCTCCTTCGCCTGGAGGGTTGATGTCACCTGGTAATTCGGGTGATGGGAATTCCGCGGCTTTTAGTTTGGAGTTCGGGAATGGTGAGTTTAGTGGGCCGGAGTTGAAGAAAATTATGGCTAATGAAAAACTTGCTGAGATTGCTATGGCTGATCCGAAGCGGGCTAAGAGGTGCTGTAACTGAATTATTCAACGTTTTAGTTAGTATTGTCAATATGGATGGTTAATTTTGACTTGGATATTTTTTGGGTTATTTCAGGATATTGGCTAATAGGCAATCAGCTGCGCGTTCCAAAGAGCGCAAAATGCGATACATTTCCGAGCTAGAACACAAGGTTCAGACTCTGCAGACTGAAGCCACTACACTTTCTGCACAACTTACTTTGTTGCAGGTGGGAACATTATTTGTGTTTGTGAATGCATGTTTTAGTTTGGTAATTTCAGCTTAGTTTCTTTTTTTACTAAGCCTTCATTTGATATTGTGGCGCGTTTTGTAAAATTGTGGTGGAAATCAACGCTGACGTGAAAGCTGCTTATTACAGCTTCTTTGTTTTCGGAAATCATGTTGATAATGTTTTGGGACTAACCAGAATAGTGAGTTGAAGTTAACACAATTGCAGGTTCAAACATGCGCTAATTTTATTCCTATTTTTTTGTGTATGCAGAGAGATTCAGTTGGACTCACTAACCAGAATAGTGAGTTGAAGTTCCGCCTTCAATCCATGGAACAACAGGCAAAACTCCGAGATGGTATTTCTTTCAATCTTTTCAATCTCTCATTTTTTAAGGATTTGCAAAACATACAACATTGCAACTCATTTTATGTTTATGGCTGAAAACTATCAAGCTGAAAACATAAAAGATCCATAGATGTTATTAATGTAAGAAGGGGGCTAATTTGGCATGCAGCAATTTGGGTTATTTGAAAAACTAGAAATCATAGAATTTTTAAAAATGTGGTGAGGGATGTAGACGAGATAGTGGACGAAATCAAGGTGCTAGCTTGGAGATGGAGTTTGGTTAGGCTCAATATTCCTACTTGCTTGTATTATGAATGGAGTTGGAATCCGAGGGGCCTTTTGAGGTAAATAACGGAATCTAGAGCAGCAGGAAGGCTCTCTAATTGGGTCGCGGTGCAGTTTTTTTGGATACTTAGCAGACTGCTGTTCTGTGTTTGCTGCTGCCAGTAGGGGCTGTCTGTGCTGGTTTATATTTACTGCTAAAGTTTGGTGTTTGGCCAAGGCGGTACGTTCATAGGAGTGTGTTAATTAGGTGCATAACAGTTGTTTTTGGGGAGTCTCTTGGTTGTCTTCTTTGAACTTTAGGTGCTGCTACCATACAGTGATATGGCTATCCTTTGTTTTATGTTTTTCTCCGCCTATTACGTCTTGTGTGGGTTGCCGATTCAAAAAAAGAAAAACATTAACAGCTTAAGCTTTTAAGAATGTAGATCCCTGACATGGTACCAAAGTTTGTATGACCAAGTGTGGTTAGAAGTTTCATTCTCGCTATTCCAGTTTTCCTTAATATTAATTTGAATTTCAGTACAAGATTAAGTCCTCTGTTTAGCATTGGAAGATGGGTTGTAGGAATTAAAAAGATAAGATTAGAACTTTAATGATACAAAACAGCGTTTGTACTATGAGAAAAATCATATTTTGGTTATGAAATGATCATGACAGCCGGGGTTTACTGATTCCATTACTGATGTTCAATTGTTTAAGCTGTCCCTTTATTAATTCATGTTCAAATTTCTTGGGGAGGCCTAGGTAATATCTTGAGTCAGGTAGCCTTTCTTTATGTAGGTTACTTGGTGCATGTTTGGATCAACAGTGAGATTGGCAGAATTACGGTAGTCTACCGTGATTTTGGAAAAAGCTACACTTTGTAGTTTCATAAAATCACGGTGCTGCCATGATTTGTTGCCGGACTCACCGTCAATCAAGATGACTATGAACACGACAATCCTATTATAACATCTATTTGGTTTTCCCTCAAATGGACGTTTTCCCTTTTGCTGAAACTGACGATACATGAGATTTCCTTTACATAGCTAATTATGTTTGTAAGAGTTACTACGGTTTTTGGAAAAAAGCATCCTGGGAAAGTAGATGCTGAGTAGTTGGTTTTCTCTTTGCATTTGTTATAGATAATATACTTTGTGATGCACGCTTCTTTTCTATTAGAAGTATTAATAAAAGCCATAATATCTCATCAACAACAATTATATACAATATCTAGTAGTTGTCACTTGTATCACAAACAATTTTAGACTTGTTAGTAGAACTTTTCATTGTTTGCTTTTTGCTGATTACTTCTGATCTGTGTATCCTTGTCTAATAGCTCTGAATGAGGCGCTTACTGCCGAAGTTCAAAGACTGAAGATTGCTACAGCTGAGCTGAATGGGGAGTCACTTCCTTCTAACTGCATGATTCCGCAACATTCTGTCAACCCTATGATGTTCCAACAACAGCATCAGCATCAGCAGCATCAACAACAGCAGCAGAATGGTAATGCCAACTCAAAGAATGAGTTAAAGCAATAG
Protein sequence

>MS.gene003636.t1

MEDSEPGSSFIKQQQMNNHMEQLTIPQFNASSSQSQMRTVSSRNQRGSGIPPSHPHQIPPISPYSQMNNQIPVSRPQMPSHSTSPTPSHTRSLSQPSFFSLDSLPPLSPCTFRESSSTSDHADVSMEDRDVTSHSPLPPFAARNPSLPPRKSHRRSNSDIPFGFSTVLQSSPPLIPLRGREVAKPNSSVVKRETNWEHGNVEEKKSSLSPEGEVVDDLFSAYMNLDNIDAINDDKNAATGDNRDDLDSRASGTKTNGGDSSDNEAESSVNESGDSMQRREGNKRSAGGDIAPTTRHYRSVSMDSFIGKLNFNDESLKMPPSPGGLMSPGNSGDGNSAAFSLEFGNGEFSGPELKKIMANEKLAEIAMADPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNSELKFRLQSMEQQAKLRDALNEALTAEVQRLKIATAELNGESLPSNCMIPQHSVNPMMFQQQHQHQQHQQQQQNGNANSKNELKQ