AlfalfaGEDB | MS.gene003636

M. sativa cultivar XinJiangDaYe / MS.gene003636

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003636.t1	XP_003607083.1	89.8	492	35	5	1	489	1	480	3.70E-212	747.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003636.t1	Q6S4P4	61.4	153	59	0	319	471	82	234	1.9e-36	155.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003636.t1	G7JJX7	89.8	492	35	5	1	489	1	480	2.7e-212	747.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene003636.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003636.t1	MTR_4g072090	94.208	518	14	6	1	514	1	506	0.0	969
MS.gene003636.t1	MTR_4g072090	93.363	452	15	5	1	449	1	440	0.0	836
MS.gene003636.t1	MTR_1g023690	47.131	488	177	16	47	484	46	502	2.93e-92	292
MS.gene003636.t1	MTR_3g467120	68.841	138	34	1	354	491	162	290	4.47e-49	173
MS.gene003636.t1	MTR_6g034945	52.074	217	92	6	288	501	76	283	1.25e-48	170
MS.gene003636.t1	MTR_5g075390	74.561	114	29	0	354	467	144	257	1.79e-48	171
MS.gene003636.t1	MTR_3g094020	63.768	138	42	1	330	467	77	206	5.52e-47	166
MS.gene003636.t1	MTR_2g099050	41.463	287	109	8	216	494	109	344	2.58e-46	167
MS.gene003636.t1	MTR_2g090900	49.474	95	48	0	367	461	189	283	4.68e-20	91.7
MS.gene003636.t1	MTR_2g090900	49.474	95	48	0	367	461	189	283	5.71e-20	91.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003636.t1	AT4G38900	57.443	524	137	25	11	490	31	512	6.95e-159	463
MS.gene003636.t1	AT4G38900	57.443	524	137	25	11	490	31	512	6.95e-159	463
MS.gene003636.t1	AT4G38900	56.792	530	137	26	11	490	31	518	3.29e-156	456
MS.gene003636.t1	AT2G21230	53.145	461	162	17	87	510	72	515	1.56e-124	374
MS.gene003636.t1	AT2G21230	53.145	461	162	17	87	510	72	515	1.56e-124	374
MS.gene003636.t1	AT2G21230	52.248	467	163	18	87	510	72	521	3.96e-121	365
MS.gene003636.t1	AT2G21230	54.660	397	130	16	87	450	72	451	8.38e-112	339
MS.gene003636.t1	AT2G40620	64.583	144	50	1	324	467	104	246	1.44e-49	174
MS.gene003636.t1	AT1G06850	66.418	134	43	1	340	471	117	250	1.20e-48	171
MS.gene003636.t1	AT2G31370	44.314	255	94	6	213	467	93	299	9.09e-48	170

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Find 128 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTAGAAAATCCAAA+CGG	0.603502	4.1:+31176920	None:intergenic
AAAACTTGCTGAGATTGCTA+TGG	0.624523	4.1:-31176321	MS.gene003636:CDS
AAAGAATGAGTTAAAGCAAT+AGG	0.398703	4.1:-31173923	None:intergenic
AAATAGGTGGGATCTGGTGT+GGG	0.492947	4.1:+31177239	None:intergenic
AAATCGTCGTTGTCGCCGGA+AGG	0.604451	4.1:-31176788	MS.gene003636:CDS
AACGTCAGCATGATCCGACG+TGG	0.690918	4.1:+31177051	None:intergenic
AACGTGCAAGGGCTGAGAGG+CGG	0.597136	4.1:+31177088	None:intergenic
AAGATGCCTCCTTCGCCTGG+AGG	0.581524	4.1:-31176452	MS.gene003636:CDS
AAGATTCGCGAAACGTGCAA+GGG	0.666107	4.1:+31177077	None:intergenic
AAGGTGAAATAGGTGGGATC+TGG	0.472913	4.1:+31177233	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCTTCAGTCTTTGAACTT+CGG	+	chr4.1:31177244-31177263	None:intergenic	30.0%
ATTCCGTTATTTACCTCAAA+AGG	+	chr4.1:31175955-31175974	None:intergenic	30.0%
CAAGTAACCTACATAAAGAA+AGG	+	chr4.1:31176670-31176689	None:intergenic	30.0%
CATTCATAATACAAGCAAGT+AGG	+	chr4.1:31175914-31175933	None:intergenic	30.0%
CGGAGAAAAACATAAAACAA+AGG	+	chr4.1:31176234-31176253	None:intergenic	30.0%
CTACTTGCTTGTATTATGAA+TGG	-	chr4.1:31175912-31175931	MS.gene003636:intron	30.0%
CTCTGCATACACAAAAAAAT+AGG	+	chr4.1:31175524-31175543	None:intergenic	30.0%
CTTTAACTCATTCTTTGAGT+TGG	+	chr4.1:31177397-31177416	None:intergenic	30.0%
CTTTCTTTATGTAGGTTACT+TGG	-	chr4.1:31176668-31176687	MS.gene003636:CDS	30.0%
GATTGAAAGAAATACCATCT+CGG	+	chr4.1:31175622-31175641	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	31173924	31177422	31173924	ID=MS.gene003636
chr4.1	mRNA	31173924	31177422	31173924	ID=MS.gene003636.t1;Parent=MS.gene003636
chr4.1	exon	31176299	31177422	31176299	ID=MS.gene003636.t1.exon1;Parent=MS.gene003636.t1
chr4.1	CDS	31176299	31177422	31176299	ID=cds.MS.gene003636.t1;Parent=MS.gene003636.t1
chr4.1	exon	31176078	31176210	31176078	ID=MS.gene003636.t1.exon2;Parent=MS.gene003636.t1
chr4.1	CDS	31176078	31176210	31176078	ID=cds.MS.gene003636.t1;Parent=MS.gene003636.t1
chr4.1	exon	31175720	31175804	31175720	ID=MS.gene003636.t1.exon3;Parent=MS.gene003636.t1
chr4.1	CDS	31175720	31175804	31175720	ID=cds.MS.gene003636.t1;Parent=MS.gene003636.t1
chr4.1	exon	31173924	31174126	31173924	ID=MS.gene003636.t1.exon4;Parent=MS.gene003636.t1
chr4.1	CDS	31173924	31174126	31173924	ID=cds.MS.gene003636.t1;Parent=MS.gene003636.t1

Gene Sequence

>MS.gene003636

ATGGAAGATAGTGAACCAGGTTCATCTTTCATCAAACAACAACAAATGAACAATCATATGGAACAATTAACCATACCACAGTTTAATGCATCATCATCACAATCACAAATGCGAACTGTTAGTAGCAGAAATCAAAGAGGAAGTGGTATACCACCATCTCACCCACACCAGATCCCACCTATTTCACCTTACTCTCAGATGAACAATCAGATCCCGGTTTCACGGCCGCAAATGCCGTCGCACAGTACAAGTCCTACACCTTCCCACACACGATCACTCTCTCAACCGTCTTTTTTCTCGCTCGACTCTCTTCCGCCTCTCAGCCCTTGCACGTTTCGCGAATCTTCCTCCACGTCGGATCATGCTGACGTTTCCATGGAAGATCGTGACGTCACTTCTCATTCTCCGTTGCCTCCGTTTGCTGCTAGAAACCCTTCTTTACCGCCGAGAAAATCTCACCGGCGTTCTAACAGTGATATTCCGTTTGGATTTTCTACTGTTTTGCAGTCTTCGCCGCCGTTGATTCCGCTGAGAGGAAGGGAAGTTGCTAAACCTAATTCGTCTGTGGTGAAAAGGGAAACAAATTGGGAACATGGTAATGTAGAGGAGAAGAAATCGTCGTTGTCGCCGGAAGGTGAAGTTGTGGATGATCTTTTTTCTGCTTATATGAATTTGGATAACATTGATGCAATTAACGATGATAAAAACGCGGCTACTGGTGATAATCGCGATGATTTGGACAGTAGGGCGAGTGGAACGAAGACTAATGGTGGTGATAGTAGTGATAATGAAGCTGAGAGTAGTGTTAATGAGAGTGGGGATAGTATGCAGAGGAGGGAAGGGAATAAGAGAAGTGCAGGAGGTGATATTGCACCGACTACGAGACATTATAGAAGTGTTTCGATGGATAGTTTTATTGGGAAGTTGAATTTCAATGACGAGTCTTTGAAGATGCCTCCTTCGCCTGGAGGGTTGATGTCACCTGGTAATTCGGGTGATGGGAATTCCGCGGCTTTTAGTTTGGAGTTCGGGAATGGTGAGTTTAGTGGGCCGGAGTTGAAGAAAATTATGGCTAATGAAAAACTTGCTGAGATTGCTATGGCTGATCCGAAGCGGGCTAAGAGGTGCTGTAACTGAATTATTCAACGTTTTAGTTAGTATTGTCAATATGGATGGTTAATTTTGACTTGGATATTTTTTGGGTTATTTCAGGATATTGGCTAATAGGCAATCAGCTGCGCGTTCCAAAGAGCGCAAAATGCGATACATTTCCGAGCTAGAACACAAGGTTCAGACTCTGCAGACTGAAGCCACTACACTTTCTGCACAACTTACTTTGTTGCAGGTGGGAACATTATTTGTGTTTGTGAATGCATGTTTTAGTTTGGTAATTTCAGCTTAGTTTCTTTTTTTACTAAGCCTTCATTTGATATTGTGGCGCGTTTTGTAAAATTGTGGTGGAAATCAACGCTGACGTGAAAGCTGCTTATTACAGCTTCTTTGTTTTCGGAAATCATGTTGATAATGTTTTGGGACTAACCAGAATAGTGAGTTGAAGTTAACACAATTGCAGGTTCAAACATGCGCTAATTTTATTCCTATTTTTTTGTGTATGCAGAGAGATTCAGTTGGACTCACTAACCAGAATAGTGAGTTGAAGTTCCGCCTTCAATCCATGGAACAACAGGCAAAACTCCGAGATGGTATTTCTTTCAATCTTTTCAATCTCTCATTTTTTAAGGATTTGCAAAACATACAACATTGCAACTCATTTTATGTTTATGGCTGAAAACTATCAAGCTGAAAACATAAAAGATCCATAGATGTTATTAATGTAAGAAGGGGGCTAATTTGGCATGCAGCAATTTGGGTTATTTGAAAAACTAGAAATCATAGAATTTTTAAAAATGTGGTGAGGGATGTAGACGAGATAGTGGACGAAATCAAGGTGCTAGCTTGGAGATGGAGTTTGGTTAGGCTCAATATTCCTACTTGCTTGTATTATGAATGGAGTTGGAATCCGAGGGGCCTTTTGAGGTAAATAACGGAATCTAGAGCAGCAGGAAGGCTCTCTAATTGGGTCGCGGTGCAGTTTTTTTGGATACTTAGCAGACTGCTGTTCTGTGTTTGCTGCTGCCAGTAGGGGCTGTCTGTGCTGGTTTATATTTACTGCTAAAGTTTGGTGTTTGGCCAAGGCGGTACGTTCATAGGAGTGTGTTAATTAGGTGCATAACAGTTGTTTTTGGGGAGTCTCTTGGTTGTCTTCTTTGAACTTTAGGTGCTGCTACCATACAGTGATATGGCTATCCTTTGTTTTATGTTTTTCTCCGCCTATTACGTCTTGTGTGGGTTGCCGATTCAAAAAAAGAAAAACATTAACAGCTTAAGCTTTTAAGAATGTAGATCCCTGACATGGTACCAAAGTTTGTATGACCAAGTGTGGTTAGAAGTTTCATTCTCGCTATTCCAGTTTTCCTTAATATTAATTTGAATTTCAGTACAAGATTAAGTCCTCTGTTTAGCATTGGAAGATGGGTTGTAGGAATTAAAAAGATAAGATTAGAACTTTAATGATACAAAACAGCGTTTGTACTATGAGAAAAATCATATTTTGGTTATGAAATGATCATGACAGCCGGGGTTTACTGATTCCATTACTGATGTTCAATTGTTTAAGCTGTCCCTTTATTAATTCATGTTCAAATTTCTTGGGGAGGCCTAGGTAATATCTTGAGTCAGGTAGCCTTTCTTTATGTAGGTTACTTGGTGCATGTTTGGATCAACAGTGAGATTGGCAGAATTACGGTAGTCTACCGTGATTTTGGAAAAAGCTACACTTTGTAGTTTCATAAAATCACGGTGCTGCCATGATTTGTTGCCGGACTCACCGTCAATCAAGATGACTATGAACACGACAATCCTATTATAACATCTATTTGGTTTTCCCTCAAATGGACGTTTTCCCTTTTGCTGAAACTGACGATACATGAGATTTCCTTTACATAGCTAATTATGTTTGTAAGAGTTACTACGGTTTTTGGAAAAAAGCATCCTGGGAAAGTAGATGCTGAGTAGTTGGTTTTCTCTTTGCATTTGTTATAGATAATATACTTTGTGATGCACGCTTCTTTTCTATTAGAAGTATTAATAAAAGCCATAATATCTCATCAACAACAATTATATACAATATCTAGTAGTTGTCACTTGTATCACAAACAATTTTAGACTTGTTAGTAGAACTTTTCATTGTTTGCTTTTTGCTGATTACTTCTGATCTGTGTATCCTTGTCTAATAGCTCTGAATGAGGCGCTTACTGCCGAAGTTCAAAGACTGAAGATTGCTACAGCTGAGCTGAATGGGGAGTCACTTCCTTCTAACTGCATGATTCCGCAACATTCTGTCAACCCTATGATGTTCCAACAACAGCATCAGCATCAGCAGCATCAACAACAGCAGCAGAATGGTAATGCCAACTCAAAGAATGAGTTAAAGCAATAG

Protein sequence

>MS.gene003636.t1

MEDSEPGSSFIKQQQMNNHMEQLTIPQFNASSSQSQMRTVSSRNQRGSGIPPSHPHQIPPISPYSQMNNQIPVSRPQMPSHSTSPTPSHTRSLSQPSFFSLDSLPPLSPCTFRESSSTSDHADVSMEDRDVTSHSPLPPFAARNPSLPPRKSHRRSNSDIPFGFSTVLQSSPPLIPLRGREVAKPNSSVVKRETNWEHGNVEEKKSSLSPEGEVVDDLFSAYMNLDNIDAINDDKNAATGDNRDDLDSRASGTKTNGGDSSDNEAESSVNESGDSMQRREGNKRSAGGDIAPTTRHYRSVSMDSFIGKLNFNDESLKMPPSPGGLMSPGNSGDGNSAAFSLEFGNGEFSGPELKKIMANEKLAEIAMADPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNSELKFRLQSMEQQAKLRDALNEALTAEVQRLKIATAELNGESLPSNCMIPQHSVNPMMFQQQHQHQQHQQQQQNGNANSKNELKQ