Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003652.t1 | AFK46483.1 | 97.7 | 177 | 4 | 0 | 1 | 177 | 119 | 295 | 1.20E-98 | 369 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003652.t1 | O65515 | 53.7 | 175 | 57 | 6 | 3 | 163 | 70 | 234 | 8.5e-40 | 164.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003652.t1 | G7JJU1 | 97.7 | 177 | 4 | 0 | 1 | 177 | 119 | 295 | 8.8e-99 | 369.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene003652.t1 | TF | C2C2-GATA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003652.t1 | MTR_4g071590 | 97.740 | 177 | 4 | 0 | 1 | 177 | 119 | 295 | 3.20e-131 | 369 |
MS.gene003652.t1 | MTR_4g471590 | 97.740 | 177 | 4 | 0 | 1 | 177 | 119 | 295 | 3.20e-131 | 369 |
MS.gene003652.t1 | MTR_3g117380 | 58.291 | 199 | 59 | 6 | 2 | 177 | 117 | 314 | 1.56e-65 | 203 |
MS.gene003652.t1 | MTR_5g021340 | 42.373 | 236 | 74 | 7 | 1 | 177 | 157 | 389 | 1.61e-45 | 154 |
MS.gene003652.t1 | MTR_8g076340 | 47.312 | 186 | 69 | 6 | 1 | 162 | 107 | 287 | 1.22e-43 | 146 |
MS.gene003652.t1 | MTR_3g109760 | 43.979 | 191 | 72 | 7 | 2 | 162 | 91 | 276 | 1.71e-38 | 134 |
MS.gene003652.t1 | MTR_8g013950 | 42.632 | 190 | 76 | 7 | 2 | 162 | 110 | 295 | 3.39e-37 | 131 |
MS.gene003652.t1 | MTR_1g006650 | 41.000 | 200 | 78 | 7 | 2 | 162 | 105 | 303 | 1.80e-36 | 129 |
MS.gene003652.t1 | MTR_1g094930 | 80.000 | 65 | 13 | 0 | 93 | 157 | 147 | 211 | 2.96e-35 | 123 |
MS.gene003652.t1 | MTR_1g094930 | 80.000 | 65 | 13 | 0 | 93 | 157 | 242 | 306 | 9.28e-35 | 124 |
MS.gene003652.t1 | MTR_6g032830 | 81.538 | 65 | 12 | 0 | 93 | 157 | 192 | 256 | 1.59e-34 | 122 |
MS.gene003652.t1 | MTR_1g116010 | 67.532 | 77 | 25 | 0 | 93 | 169 | 164 | 240 | 8.08e-34 | 120 |
MS.gene003652.t1 | MTR_7g085410 | 80.000 | 65 | 13 | 0 | 93 | 157 | 188 | 252 | 1.37e-33 | 120 |
MS.gene003652.t1 | MTR_1g046680 | 76.471 | 68 | 16 | 0 | 93 | 160 | 172 | 239 | 1.98e-33 | 119 |
MS.gene003652.t1 | MTR_2g094600 | 62.791 | 86 | 30 | 1 | 72 | 157 | 197 | 280 | 2.00e-33 | 120 |
MS.gene003652.t1 | MTR_4g058910 | 73.134 | 67 | 18 | 0 | 93 | 159 | 314 | 380 | 2.09e-32 | 119 |
MS.gene003652.t1 | MTR_5g007600 | 45.139 | 144 | 63 | 3 | 29 | 162 | 191 | 328 | 1.23e-30 | 114 |
MS.gene003652.t1 | MTR_5g007600 | 59.036 | 83 | 28 | 1 | 80 | 156 | 138 | 220 | 6.29e-27 | 103 |
MS.gene003652.t1 | MTR_7g446110 | 57.143 | 63 | 27 | 0 | 92 | 154 | 186 | 248 | 4.15e-21 | 87.0 |
MS.gene003652.t1 | MTR_7g445980 | 51.316 | 76 | 36 | 1 | 80 | 154 | 20 | 95 | 1.81e-20 | 81.6 |
MS.gene003652.t1 | MTR_7g445950 | 30.464 | 151 | 101 | 1 | 4 | 154 | 35 | 181 | 2.03e-20 | 84.0 |
MS.gene003652.t1 | MTR_7g446070 | 53.226 | 62 | 29 | 0 | 93 | 154 | 132 | 193 | 9.35e-19 | 79.7 |
MS.gene003652.t1 | MTR_5g020230 | 43.103 | 58 | 33 | 0 | 68 | 125 | 97 | 154 | 6.03e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003652.t1 | AT4G36240 | 53.714 | 175 | 57 | 6 | 3 | 163 | 70 | 234 | 2.43e-50 | 162 |
MS.gene003652.t1 | AT4G34680 | 52.381 | 168 | 63 | 6 | 2 | 164 | 96 | 251 | 1.34e-46 | 153 |
MS.gene003652.t1 | AT4G34680 | 52.381 | 168 | 63 | 6 | 2 | 164 | 96 | 251 | 1.34e-46 | 153 |
MS.gene003652.t1 | AT5G66320 | 40.517 | 232 | 69 | 6 | 1 | 172 | 107 | 329 | 5.27e-45 | 151 |
MS.gene003652.t1 | AT5G66320 | 40.517 | 232 | 69 | 6 | 1 | 172 | 107 | 329 | 5.27e-45 | 151 |
MS.gene003652.t1 | AT2G45050 | 45.161 | 186 | 68 | 4 | 1 | 162 | 73 | 248 | 5.60e-42 | 141 |
MS.gene003652.t1 | AT3G60530 | 49.419 | 172 | 66 | 6 | 1 | 164 | 71 | 229 | 4.49e-41 | 138 |
MS.gene003652.t1 | AT3G51080 | 69.231 | 91 | 22 | 2 | 93 | 177 | 221 | 311 | 2.42e-39 | 136 |
MS.gene003652.t1 | AT5G25830 | 42.593 | 216 | 68 | 11 | 1 | 162 | 75 | 288 | 8.41e-39 | 135 |
MS.gene003652.t1 | AT4G32890 | 40.306 | 196 | 78 | 7 | 2 | 162 | 75 | 266 | 1.13e-37 | 131 |
MS.gene003652.t1 | AT3G24050 | 66.265 | 83 | 27 | 1 | 78 | 159 | 178 | 260 | 2.93e-34 | 122 |
MS.gene003652.t1 | AT3G54810 | 75.000 | 68 | 17 | 0 | 93 | 160 | 229 | 296 | 1.78e-33 | 121 |
MS.gene003652.t1 | AT3G54810 | 75.000 | 68 | 17 | 0 | 93 | 160 | 229 | 296 | 1.78e-33 | 121 |
MS.gene003652.t1 | AT1G08010 | 72.464 | 69 | 19 | 0 | 93 | 161 | 220 | 288 | 7.31e-33 | 119 |
MS.gene003652.t1 | AT1G08010 | 72.464 | 69 | 19 | 0 | 93 | 161 | 220 | 288 | 7.31e-33 | 119 |
MS.gene003652.t1 | AT1G08010 | 72.464 | 69 | 19 | 0 | 93 | 161 | 220 | 288 | 7.31e-33 | 119 |
MS.gene003652.t1 | AT1G08000 | 71.014 | 69 | 20 | 0 | 93 | 161 | 218 | 286 | 5.40e-31 | 114 |
MS.gene003652.t1 | AT1G08000 | 71.014 | 69 | 20 | 0 | 93 | 161 | 218 | 286 | 5.40e-31 | 114 |
MS.gene003652.t1 | AT3G45170 | 57.895 | 76 | 32 | 0 | 92 | 167 | 114 | 189 | 3.49e-27 | 102 |
MS.gene003652.t1 | AT2G28340 | 63.077 | 65 | 24 | 0 | 95 | 159 | 193 | 257 | 4.28e-25 | 98.6 |
Find 69 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCTTGTCTTGGTTGTTCT+AGG | 0.195513 | 4.1:+31425682 | None:intergenic |
AGCCCCACCCGTTTGGGCTT+CGG | 0.226880 | 4.1:+31425594 | None:intergenic |
GCCCCACCCGTTTGGGCTTC+GGG | 0.232140 | 4.1:+31425595 | None:intergenic |
GGCCGATGATGTTGCGGATT+TGG | 0.241470 | 4.1:-31425839 | MS.gene003652:CDS |
GAACAGCCACCGTAAGGTTT+TGG | 0.270098 | 4.1:-31425398 | MS.gene003652:CDS |
GAGGTGGATGAACCGGTTTC+CGG | 0.310815 | 4.1:-31425358 | MS.gene003652:CDS |
GGTTCGGCCCGGGCCTGAAC+TGG | 0.312951 | 4.1:+31425763 | None:intergenic |
GAAACTGAGCCCCACCCGTT+TGG | 0.331959 | 4.1:+31425587 | None:intergenic |
TCTTTGCTGAAAAGAGTATA+GGG | 0.337151 | 4.1:+31425632 | None:intergenic |
AAACTGAGCCCCACCCGTTT+GGG | 0.350163 | 4.1:+31425588 | None:intergenic |
CTCTCTATTGTATCCAGTTC+AGG | 0.364580 | 4.1:-31425776 | MS.gene003652:CDS |
AACCGGTTTCCGGTCTGAAC+CGG | 0.370991 | 4.1:-31425348 | MS.gene003652:CDS |
GCATTGGTTGGGCCCGGTCT+AGG | 0.372639 | 4.1:+31425736 | None:intergenic |
ACAGTTGGGCCTTCTTGTCT+TGG | 0.379924 | 4.1:+31425672 | None:intergenic |
GTTGGGCCCGGTCTAGGTTC+CGG | 0.399228 | 4.1:+31425742 | None:intergenic |
AGTTCAGGCCCGGGCCGAAC+CGG | 0.407384 | 4.1:-31425761 | MS.gene003652:CDS |
GTCTAGGTTCCGGTTCGGCC+CGG | 0.414385 | 4.1:+31425752 | None:intergenic |
GGCCGAACCGGAACCTAGAC+CGG | 0.414860 | 4.1:-31425749 | MS.gene003652:CDS |
TTCTTTGCTGAAAAGAGTAT+AGG | 0.416988 | 4.1:+31425631 | None:intergenic |
TTTGGAAATGAGGCGGAGGA+AGG | 0.432787 | 4.1:-31425380 | MS.gene003652:CDS |
TATGTAACGCTTGTGGTGTT+CGG | 0.433641 | 4.1:-31425492 | MS.gene003652:CDS |
TATTGTATCCAGTTCAGGCC+CGG | 0.446736 | 4.1:-31425771 | MS.gene003652:CDS |
GGAATGGGTGTCTCACTTTG+TGG | 0.449579 | 4.1:-31425818 | MS.gene003652:CDS |
AATGAGGCGGAGGAAGGAGG+TGG | 0.451531 | 4.1:-31425374 | MS.gene003652:CDS |
ATCCGGTTCAGACCGGAAAC+CGG | 0.452815 | 4.1:+31425346 | None:intergenic |
GAGGAAGGAGGTGGATGAAC+CGG | 0.452883 | 4.1:-31425365 | MS.gene003652:CDS |
TCTAGGTTCCGGTTCGGCCC+GGG | 0.468440 | 4.1:+31425753 | None:intergenic |
GCCTCATTTCCAAAACCTTA+CGG | 0.469337 | 4.1:+31425389 | None:intergenic |
TTCTGCGGATTATAGAGAGC+TGG | 0.472534 | 4.1:+31425707 | None:intergenic |
CGGTCTGAACCGGATTCAAA+TGG | 0.475660 | 4.1:-31425338 | MS.gene003652:CDS |
ATGATGTTGCGGATTTGGAA+TGG | 0.479723 | 4.1:-31425834 | MS.gene003652:CDS |
AACTCGTGACCATTTGAATC+CGG | 0.481371 | 4.1:+31425329 | None:intergenic |
CAGTGGAGAGCTGGTCCGCT+TGG | 0.483307 | 4.1:-31425526 | MS.gene003652:CDS |
TGTGGTGTTCGGTTTAAGTC+CGG | 0.492368 | 4.1:-31425481 | MS.gene003652:CDS |
GGATACAATAGAGAGAGTTC+TGG | 0.493646 | 4.1:+31425784 | None:intergenic |
GCCCGAAGCCCAAACGGGTG+GGG | 0.493923 | 4.1:-31425596 | MS.gene003652:CDS |
AAAATCCACACGTTACAGTT+GGG | 0.498357 | 4.1:+31425658 | None:intergenic |
TGATGTTGCGGATTTGGAAT+GGG | 0.501793 | 4.1:-31425833 | MS.gene003652:CDS |
GGAAATGAGGCGGAGGAAGG+AGG | 0.505698 | 4.1:-31425377 | MS.gene003652:CDS |
GCCCGGTCTAGGTTCCGGTT+CGG | 0.510484 | 4.1:+31425747 | None:intergenic |
AGCTGGGAATAAGCATTGGT+TGG | 0.510903 | 4.1:+31425724 | None:intergenic |
TTCTCAGGCCGATGATGTTG+CGG | 0.519029 | 4.1:-31425845 | None:intergenic |
GCTGGGAATAAGCATTGGTT+GGG | 0.531676 | 4.1:+31425725 | None:intergenic |
AAAACGCCACAGTGGAGAGC+TGG | 0.532352 | 4.1:-31425535 | MS.gene003652:CDS |
TGCATGCAGGTCTATACTCC+GGG | 0.538197 | 4.1:+31425449 | None:intergenic |
TTCCAAATCCGCAACATCAT+CGG | 0.540001 | 4.1:+31425837 | None:intergenic |
AGCCCGAAGCCCAAACGGGT+GGG | 0.541657 | 4.1:-31425597 | MS.gene003652:CDS |
GAATAAGCATTGGTTGGGCC+CGG | 0.542060 | 4.1:+31425730 | None:intergenic |
ATTGTATCCAGTTCAGGCCC+GGG | 0.543140 | 4.1:-31425770 | MS.gene003652:CDS |
AGAGAGCTGGGAATAAGCAT+TGG | 0.549150 | 4.1:+31425720 | None:intergenic |
GCCGAACCGGAACCTAGACC+GGG | 0.552879 | 4.1:-31425748 | MS.gene003652:CDS |
TCTGCGGATTATAGAGAGCT+GGG | 0.553907 | 4.1:+31425708 | None:intergenic |
CATTTGAATCCGGTTCAGAC+CGG | 0.555998 | 4.1:+31425339 | None:intergenic |
GCTGTTCGAATGAATTTCAC+CGG | 0.556294 | 4.1:+31425414 | None:intergenic |
AAGCCCGAAGCCCAAACGGG+TGG | 0.557944 | 4.1:-31425598 | MS.gene003652:CDS |
TCATTCGAACAGCCACCGTA+AGG | 0.576237 | 4.1:-31425404 | MS.gene003652:CDS |
CTGCATGCAGGTCTATACTC+CGG | 0.578551 | 4.1:+31425448 | None:intergenic |
CTAGAACAACCAAGACAAGA+AGG | 0.581886 | 4.1:-31425681 | MS.gene003652:CDS |
ATACTCCGGGAAAAGCCGAC+CGG | 0.594686 | 4.1:+31425462 | None:intergenic |
TGGTTGTTCTAGGCTTTCTG+CGG | 0.603627 | 4.1:+31425692 | None:intergenic |
GAAAACGTCGGACTGCATGC+AGG | 0.603890 | 4.1:+31425436 | None:intergenic |
GTGTTCGGTTTAAGTCCGGT+CGG | 0.631814 | 4.1:-31425477 | MS.gene003652:CDS |
GAAGGCCCAACTGTAACGTG+TGG | 0.654146 | 4.1:-31425663 | MS.gene003652:CDS |
AAAACACTATGTAACGCTTG+TGG | 0.656575 | 4.1:-31425499 | MS.gene003652:CDS |
TGAATTTCACCGGAAAACGT+CGG | 0.667076 | 4.1:+31425424 | None:intergenic |
TCATTTCCAAAACCTTACGG+TGG | 0.687073 | 4.1:+31425392 | None:intergenic |
AGCGGACCAGCTCTCCACTG+TGG | 0.697012 | 4.1:+31425529 | None:intergenic |
ATGTTCAGAAAACGCCACAG+TGG | 0.715931 | 4.1:-31425543 | MS.gene003652:CDS |
GTGGGGCTCAGTTTCAACGA+CGG | 0.724625 | 4.1:-31425579 | MS.gene003652:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | TCTTTGCTGAAAAGAGTATA+GGG | + | chr4.1:31425536-31425555 | None:intergenic | 30.0% |
! | TTCTTTGCTGAAAAGAGTAT+AGG | + | chr4.1:31425537-31425556 | None:intergenic | 30.0% |
AAAAATCCACACGTTACAGT+TGG | + | chr4.1:31425511-31425530 | None:intergenic | 35.0% | |
AAAACACTATGTAACGCTTG+TGG | - | chr4.1:31425666-31425685 | MS.gene003652:CDS | 35.0% | |
AAAATCCACACGTTACAGTT+GGG | + | chr4.1:31425510-31425529 | None:intergenic | 35.0% | |
! | CAAGCGTTACATAGTGTTTT+CGG | + | chr4.1:31425666-31425685 | None:intergenic | 35.0% |
AACTCGTGACCATTTGAATC+CGG | + | chr4.1:31425839-31425858 | None:intergenic | 40.0% | |
ATGATGTTGCGGATTTGGAA+TGG | - | chr4.1:31425331-31425350 | MS.gene003652:CDS | 40.0% | |
CTAGAACAACCAAGACAAGA+AGG | - | chr4.1:31425484-31425503 | MS.gene003652:CDS | 40.0% | |
CTCTCTATTGTATCCAGTTC+AGG | - | chr4.1:31425389-31425408 | MS.gene003652:CDS | 40.0% | |
CTTCTTGTCTTGGTTGTTCT+AGG | + | chr4.1:31425486-31425505 | None:intergenic | 40.0% | |
GCCTCATTTCCAAAACCTTA+CGG | + | chr4.1:31425779-31425798 | None:intergenic | 40.0% | |
GCTGTTCGAATGAATTTCAC+CGG | + | chr4.1:31425754-31425773 | None:intergenic | 40.0% | |
GGATACAATAGAGAGAGTTC+TGG | + | chr4.1:31425384-31425403 | None:intergenic | 40.0% | |
TATGTAACGCTTGTGGTGTT+CGG | - | chr4.1:31425673-31425692 | MS.gene003652:CDS | 40.0% | |
TCATTTCCAAAACCTTACGG+TGG | + | chr4.1:31425776-31425795 | None:intergenic | 40.0% | |
TGAATTTCACCGGAAAACGT+CGG | + | chr4.1:31425744-31425763 | None:intergenic | 40.0% | |
TTCCAAATCCGCAACATCAT+CGG | + | chr4.1:31425331-31425350 | None:intergenic | 40.0% | |
! | TCTTTTCAGCAAAGAAGCAG+AGG | - | chr4.1:31425541-31425560 | MS.gene003652:CDS | 40.0% |
! | TGATGTTGCGGATTTGGAAT+GGG | - | chr4.1:31425332-31425351 | MS.gene003652:CDS | 40.0% |
!!! | ACCGTAAGGTTTTGGAAATG+AGG | - | chr4.1:31425775-31425794 | MS.gene003652:CDS | 40.0% |
!!! | GTAAGGTTTTGGAAATGAGG+CGG | - | chr4.1:31425778-31425797 | MS.gene003652:CDS | 40.0% |
AGAGAGCTGGGAATAAGCAT+TGG | + | chr4.1:31425448-31425467 | None:intergenic | 45.0% | |
ATGTTCAGAAAACGCCACAG+TGG | - | chr4.1:31425622-31425641 | MS.gene003652:CDS | 45.0% | |
CATTTGAATCCGGTTCAGAC+CGG | + | chr4.1:31425829-31425848 | None:intergenic | 45.0% | |
TATTGTATCCAGTTCAGGCC+CGG | - | chr4.1:31425394-31425413 | MS.gene003652:CDS | 45.0% | |
TGTGGTGTTCGGTTTAAGTC+CGG | - | chr4.1:31425684-31425703 | MS.gene003652:CDS | 45.0% | |
! | ACTGTGGCGTTTTCTGAACA+TGG | + | chr4.1:31425623-31425642 | None:intergenic | 45.0% |
! | CATAGTGTTTTCGGTCCAAG+CGG | + | chr4.1:31425657-31425676 | None:intergenic | 45.0% |
! | TCTGCGGATTATAGAGAGCT+GGG | + | chr4.1:31425460-31425479 | None:intergenic | 45.0% |
! | TGGTTGTTCTAGGCTTTCTG+CGG | + | chr4.1:31425476-31425495 | None:intergenic | 45.0% |
! | TTCTGCGGATTATAGAGAGC+TGG | + | chr4.1:31425461-31425480 | None:intergenic | 45.0% |
!! | AGCTGGGAATAAGCATTGGT+TGG | + | chr4.1:31425444-31425463 | None:intergenic | 45.0% |
!! | GCTGGGAATAAGCATTGGTT+GGG | + | chr4.1:31425443-31425462 | None:intergenic | 45.0% |
AAAAAGCCCGAAGCCCAAAC+GGG | - | chr4.1:31425564-31425583 | MS.gene003652:CDS | 50.0% | |
ACAGTTGGGCCTTCTTGTCT+TGG | + | chr4.1:31425496-31425515 | None:intergenic | 50.0% | |
ATTGTATCCAGTTCAGGCCC+GGG | - | chr4.1:31425395-31425414 | MS.gene003652:CDS | 50.0% | |
CGGTCTGAACCGGATTCAAA+TGG | - | chr4.1:31425827-31425846 | MS.gene003652:CDS | 50.0% | |
CTGCATGCAGGTCTATACTC+CGG | + | chr4.1:31425720-31425739 | None:intergenic | 50.0% | |
GAAAAAGCCCGAAGCCCAAA+CGG | - | chr4.1:31425563-31425582 | MS.gene003652:CDS | 50.0% | |
GGAATGGGTGTCTCACTTTG+TGG | - | chr4.1:31425347-31425366 | MS.gene003652:CDS | 50.0% | |
GTGTTCGGTTTAAGTCCGGT+CGG | - | chr4.1:31425688-31425707 | MS.gene003652:CDS | 50.0% | |
TCATTCGAACAGCCACCGTA+AGG | - | chr4.1:31425761-31425780 | MS.gene003652:CDS | 50.0% | |
TGCATGCAGGTCTATACTCC+GGG | + | chr4.1:31425719-31425738 | None:intergenic | 50.0% | |
TTTGGAAATGAGGCGGAGGA+AGG | - | chr4.1:31425785-31425804 | MS.gene003652:CDS | 50.0% | |
! | GAACAGCCACCGTAAGGTTT+TGG | - | chr4.1:31425767-31425786 | MS.gene003652:CDS | 50.0% |
! | GCGTTTTCTGAACATGGCAG+TGG | + | chr4.1:31425617-31425636 | None:intergenic | 50.0% |
!! | GAATAAGCATTGGTTGGGCC+CGG | + | chr4.1:31425438-31425457 | None:intergenic | 50.0% |
!!! | AGGTTTTGGAAATGAGGCGG+AGG | - | chr4.1:31425781-31425800 | MS.gene003652:CDS | 50.0% |
AAAACGCCACAGTGGAGAGC+TGG | - | chr4.1:31425630-31425649 | MS.gene003652:CDS | 55.0% | |
AAACTGAGCCCCACCCGTTT+GGG | + | chr4.1:31425580-31425599 | None:intergenic | 55.0% | |
ATACTCCGGGAAAAGCCGAC+CGG | + | chr4.1:31425706-31425725 | None:intergenic | 55.0% | |
ATCCGGTTCAGACCGGAAAC+CGG | + | chr4.1:31425822-31425841 | None:intergenic | 55.0% | |
GAAAACGTCGGACTGCATGC+AGG | + | chr4.1:31425732-31425751 | None:intergenic | 55.0% | |
GAAGGCCCAACTGTAACGTG+TGG | - | chr4.1:31425502-31425521 | MS.gene003652:CDS | 55.0% | |
GAGGAAGGAGGTGGATGAAC+CGG | - | chr4.1:31425800-31425819 | MS.gene003652:CDS | 55.0% | |
GTGGGGCTCAGTTTCAACGA+CGG | - | chr4.1:31425586-31425605 | MS.gene003652:CDS | 55.0% | |
! | AACCGGTTTCCGGTCTGAAC+CGG | - | chr4.1:31425817-31425836 | MS.gene003652:CDS | 55.0% |
! | GAGGTGGATGAACCGGTTTC+CGG | - | chr4.1:31425807-31425826 | MS.gene003652:CDS | 55.0% |
! | GCATGCAGTCCGACGTTTTC+CGG | - | chr4.1:31425732-31425751 | MS.gene003652:CDS | 55.0% |
!! | TAAGTCCGGTCGGCTTTTCC+CGG | - | chr4.1:31425698-31425717 | MS.gene003652:CDS | 55.0% |
AATGAGGCGGAGGAAGGAGG+TGG | - | chr4.1:31425791-31425810 | MS.gene003652:CDS | 60.0% | |
GAAACTGAGCCCCACCCGTT+TGG | + | chr4.1:31425581-31425600 | None:intergenic | 60.0% | |
GGAAATGAGGCGGAGGAAGG+AGG | - | chr4.1:31425788-31425807 | MS.gene003652:CDS | 60.0% | |
AAGCCCGAAGCCCAAACGGG+TGG | - | chr4.1:31425567-31425586 | MS.gene003652:CDS | 65.0% | |
AGCCCCACCCGTTTGGGCTT+CGG | + | chr4.1:31425574-31425593 | None:intergenic | 65.0% | |
AGCCCGAAGCCCAAACGGGT+GGG | - | chr4.1:31425568-31425587 | MS.gene003652:CDS | 65.0% | |
AGCGGACCAGCTCTCCACTG+TGG | + | chr4.1:31425639-31425658 | None:intergenic | 65.0% | |
CAGTGGAGAGCTGGTCCGCT+TGG | - | chr4.1:31425639-31425658 | MS.gene003652:CDS | 65.0% | |
GCCCGGTCTAGGTTCCGGTT+CGG | + | chr4.1:31425421-31425440 | None:intergenic | 65.0% | |
GCCGAACCGGAACCTAGACC+GGG | - | chr4.1:31425417-31425436 | MS.gene003652:CDS | 65.0% | |
GGCCGAACCGGAACCTAGAC+CGG | - | chr4.1:31425416-31425435 | MS.gene003652:CDS | 65.0% | |
GTTGGGCCCGGTCTAGGTTC+CGG | + | chr4.1:31425426-31425445 | None:intergenic | 65.0% | |
!! | GCATTGGTTGGGCCCGGTCT+AGG | + | chr4.1:31425432-31425451 | None:intergenic | 65.0% |
!! | GTCTAGGTTCCGGTTCGGCC+CGG | + | chr4.1:31425416-31425435 | None:intergenic | 65.0% |
!! | TCTAGGTTCCGGTTCGGCCC+GGG | + | chr4.1:31425415-31425434 | None:intergenic | 65.0% |
AGTTCAGGCCCGGGCCGAAC+CGG | - | chr4.1:31425404-31425423 | MS.gene003652:CDS | 70.0% | |
GCCCCACCCGTTTGGGCTTC+GGG | + | chr4.1:31425573-31425592 | None:intergenic | 70.0% | |
GCCCGAAGCCCAAACGGGTG+GGG | - | chr4.1:31425569-31425588 | MS.gene003652:CDS | 70.0% | |
GGTTCGGCCCGGGCCTGAAC+TGG | + | chr4.1:31425405-31425424 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 31425327 | 31425860 | 31425327 | ID=MS.gene003652 |
chr4.1 | mRNA | 31425327 | 31425860 | 31425327 | ID=MS.gene003652.t1;Parent=MS.gene003652 |
chr4.1 | exon | 31425327 | 31425860 | 31425327 | ID=MS.gene003652.t1.exon1;Parent=MS.gene003652.t1 |
chr4.1 | CDS | 31425327 | 31425860 | 31425327 | ID=cds.MS.gene003652.t1;Parent=MS.gene003652.t1 |
Gene Sequence |
Protein sequence |