Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003668.t1 | XP_003607012.1 | 96 | 224 | 8 | 1 | 1 | 223 | 1 | 224 | 4.10E-119 | 437.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003668.t1 | Q0IGM7 | 53.5 | 200 | 69 | 5 | 1 | 176 | 1 | 200 | 7.5e-45 | 182.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003668.t1 | G7JIM6 | 96.0 | 224 | 8 | 1 | 1 | 223 | 1 | 224 | 3.0e-119 | 437.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene003668.t1 | TF | DBB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003668.t1 | MTR_4g071200 | 95.982 | 224 | 8 | 1 | 1 | 223 | 1 | 224 | 5.49e-160 | 443 |
| MS.gene003668.t1 | MTR_3g117320 | 59.155 | 213 | 70 | 6 | 1 | 198 | 1 | 211 | 1.01e-75 | 229 |
| MS.gene003668.t1 | MTR_1g023260 | 47.465 | 217 | 100 | 4 | 1 | 208 | 1 | 212 | 5.17e-56 | 181 |
| MS.gene003668.t1 | MTR_1g023260 | 51.366 | 183 | 82 | 2 | 1 | 181 | 1 | 178 | 3.75e-55 | 176 |
| MS.gene003668.t1 | MTR_3g113070 | 46.629 | 178 | 59 | 3 | 1 | 177 | 1 | 143 | 8.03e-50 | 163 |
| MS.gene003668.t1 | MTR_2g073370 | 50.000 | 126 | 59 | 3 | 1 | 126 | 1 | 122 | 8.97e-35 | 126 |
| MS.gene003668.t1 | MTR_4g067320 | 49.091 | 110 | 55 | 1 | 1 | 110 | 1 | 109 | 3.02e-33 | 121 |
| MS.gene003668.t1 | MTR_4g067320 | 49.091 | 110 | 55 | 1 | 1 | 110 | 1 | 109 | 3.52e-33 | 121 |
| MS.gene003668.t1 | MTR_2g099010 | 47.273 | 110 | 57 | 1 | 1 | 110 | 1 | 109 | 1.15e-30 | 114 |
| MS.gene003668.t1 | MTR_2g099010 | 47.273 | 110 | 57 | 1 | 1 | 110 | 1 | 109 | 1.19e-30 | 114 |
| MS.gene003668.t1 | MTR_5g021580 | 36.620 | 142 | 79 | 4 | 1 | 135 | 1 | 138 | 1.30e-21 | 89.4 |
| MS.gene003668.t1 | MTR_5g021580 | 36.620 | 142 | 79 | 4 | 1 | 135 | 1 | 138 | 1.34e-21 | 89.4 |
| MS.gene003668.t1 | MTR_1g013450 | 44.330 | 97 | 44 | 1 | 5 | 101 | 6 | 92 | 4.91e-21 | 90.5 |
| MS.gene003668.t1 | MTR_1g023260 | 39.216 | 153 | 79 | 4 | 65 | 208 | 57 | 204 | 5.38e-20 | 86.7 |
| MS.gene003668.t1 | MTR_3g105710 | 40.206 | 97 | 48 | 1 | 5 | 101 | 6 | 92 | 6.01e-18 | 81.6 |
| MS.gene003668.t1 | MTR_4g128930 | 40.625 | 96 | 47 | 1 | 5 | 100 | 22 | 107 | 2.12e-17 | 80.9 |
| MS.gene003668.t1 | MTR_7g018170 | 35.897 | 117 | 62 | 2 | 5 | 121 | 26 | 129 | 1.30e-16 | 79.0 |
| MS.gene003668.t1 | MTR_5g069480 | 36.082 | 97 | 52 | 1 | 1 | 97 | 1 | 87 | 6.63e-14 | 70.5 |
| MS.gene003668.t1 | MTR_5g069480 | 36.082 | 97 | 52 | 1 | 1 | 97 | 1 | 87 | 7.49e-14 | 70.9 |
| MS.gene003668.t1 | MTR_3g082630 | 35.052 | 97 | 52 | 2 | 1 | 97 | 1 | 86 | 2.43e-11 | 63.5 |
| MS.gene003668.t1 | MTR_7g108150 | 32.653 | 98 | 55 | 2 | 5 | 102 | 20 | 106 | 8.77e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003668.t1 | AT4G39070 | 52.500 | 200 | 71 | 4 | 1 | 176 | 1 | 200 | 7.96e-58 | 184 |
| MS.gene003668.t1 | AT1G75540 | 35.625 | 320 | 135 | 9 | 1 | 250 | 1 | 319 | 3.15e-53 | 176 |
| MS.gene003668.t1 | AT1G06040 | 45.985 | 137 | 67 | 2 | 1 | 137 | 1 | 130 | 1.14e-35 | 125 |
| MS.gene003668.t1 | AT1G78600 | 50.862 | 116 | 56 | 1 | 1 | 116 | 1 | 115 | 3.15e-35 | 128 |
| MS.gene003668.t1 | AT1G78600 | 41.954 | 174 | 92 | 3 | 1 | 173 | 1 | 166 | 4.34e-35 | 128 |
| MS.gene003668.t1 | AT1G06040 | 45.985 | 137 | 67 | 2 | 1 | 137 | 1 | 130 | 1.28e-34 | 125 |
| MS.gene003668.t1 | AT2G31380 | 50.442 | 113 | 55 | 1 | 1 | 113 | 1 | 112 | 2.00e-32 | 119 |
| MS.gene003668.t1 | AT4G10240 | 43.448 | 145 | 68 | 4 | 1 | 135 | 1 | 141 | 1.50e-29 | 109 |
| MS.gene003668.t1 | AT4G38960 | 42.857 | 105 | 56 | 2 | 1 | 105 | 1 | 101 | 2.79e-22 | 91.3 |
| MS.gene003668.t1 | AT4G38960 | 42.857 | 105 | 56 | 2 | 1 | 105 | 1 | 101 | 2.79e-22 | 91.3 |
| MS.gene003668.t1 | AT2G21320 | 42.857 | 105 | 56 | 2 | 1 | 105 | 1 | 101 | 4.06e-21 | 87.8 |
| MS.gene003668.t1 | AT2G24790 | 42.268 | 97 | 46 | 1 | 5 | 101 | 8 | 94 | 1.35e-20 | 87.4 |
| MS.gene003668.t1 | AT2G24790 | 42.268 | 97 | 46 | 1 | 5 | 101 | 8 | 94 | 5.03e-20 | 87.4 |
| MS.gene003668.t1 | AT5G24930 | 38.144 | 97 | 50 | 1 | 5 | 101 | 6 | 92 | 1.48e-17 | 81.6 |
| MS.gene003668.t1 | AT5G15850 | 33.333 | 123 | 69 | 2 | 5 | 127 | 12 | 121 | 4.57e-17 | 80.1 |
| MS.gene003668.t1 | AT5G15840 | 34.146 | 123 | 69 | 2 | 5 | 127 | 20 | 130 | 2.36e-16 | 77.0 |
| MS.gene003668.t1 | AT5G15840 | 34.146 | 123 | 69 | 2 | 5 | 127 | 20 | 130 | 4.62e-16 | 77.4 |
| MS.gene003668.t1 | AT3G02380 | 34.259 | 108 | 61 | 1 | 5 | 112 | 16 | 113 | 6.58e-16 | 76.6 |
| MS.gene003668.t1 | AT2G47890 | 37.755 | 98 | 49 | 2 | 5 | 102 | 13 | 98 | 1.06e-13 | 68.9 |
| MS.gene003668.t1 | AT2G47890 | 37.755 | 98 | 49 | 2 | 5 | 102 | 13 | 98 | 1.78e-13 | 69.3 |
| MS.gene003668.t1 | AT2G47890 | 37.755 | 98 | 49 | 2 | 5 | 102 | 13 | 98 | 2.70e-13 | 68.9 |
| MS.gene003668.t1 | AT5G57660 | 35.433 | 127 | 59 | 4 | 5 | 122 | 22 | 134 | 4.19e-13 | 68.6 |
| MS.gene003668.t1 | AT1G28050 | 35.644 | 101 | 55 | 1 | 2 | 102 | 6 | 96 | 1.93e-12 | 67.0 |
| MS.gene003668.t1 | AT5G48250 | 34.694 | 98 | 53 | 2 | 1 | 97 | 1 | 88 | 4.97e-12 | 65.5 |
| MS.gene003668.t1 | AT2G33500 | 34.000 | 100 | 56 | 1 | 3 | 102 | 10 | 99 | 7.49e-12 | 65.1 |
| MS.gene003668.t1 | AT2G33500 | 34.000 | 100 | 56 | 1 | 3 | 102 | 10 | 99 | 7.79e-12 | 65.1 |
| MS.gene003668.t1 | AT3G07650 | 36.047 | 86 | 45 | 1 | 1 | 86 | 1 | 76 | 4.87e-11 | 62.8 |
| MS.gene003668.t1 | AT3G07650 | 36.047 | 86 | 45 | 1 | 1 | 86 | 1 | 76 | 4.87e-11 | 62.8 |
| MS.gene003668.t1 | AT3G07650 | 36.047 | 86 | 45 | 1 | 1 | 86 | 1 | 76 | 4.87e-11 | 62.8 |
| MS.gene003668.t1 | AT3G07650 | 36.047 | 86 | 45 | 1 | 1 | 86 | 1 | 76 | 4.87e-11 | 62.8 |
Find 60 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGTTTCAATCAAGTATT+CGG | 0.289976 | 4.1:+31736381 | None:intergenic |
| ACCTTACAGAAAACGTTATT+AGG | 0.333966 | 4.1:+31736316 | None:intergenic |
| ATCACAGAGAGGGGTGTCTT+TGG | 0.337373 | 4.1:+31737003 | None:intergenic |
| CTTGAAAATGAACTTGGTCT+TGG | 0.353565 | 4.1:+31736478 | None:intergenic |
| AAGGTCTTCCATGCAGTAAC+CGG | 0.360314 | 4.1:+31736357 | None:intergenic |
| TGTTTATAACTTGAAGATCT+TGG | 0.361700 | 4.1:+31736147 | None:intergenic |
| CTGAGCCATTGGAAGTTGTT+GGG | 0.365142 | 4.1:+31736518 | None:intergenic |
| TGGTAAGTTTGTTGACTTCA+TGG | 0.370579 | 4.1:+31736602 | None:intergenic |
| AAGATAGAGCAATACTTTGC+AGG | 0.379068 | 4.1:-31736642 | MS.gene003668:CDS |
| TACTTGATTGAAACAATTCC+CGG | 0.387327 | 4.1:-31736376 | MS.gene003668:CDS |
| TCTGAGCCATTGGAAGTTGT+TGG | 0.394596 | 4.1:+31736517 | None:intergenic |
| CAGAGAGCTGCTTCATCTGC+AGG | 0.413650 | 4.1:+31737106 | None:intergenic |
| CAACATACTAAAGCTGTTGA+AGG | 0.434663 | 4.1:-31736026 | MS.gene003668:CDS |
| CCCCACATTGATTCTTTAGA+CGG | 0.435559 | 4.1:-31736062 | MS.gene003668:CDS |
| CCTCTACATTGTTTGAAGAA+TGG | 0.436801 | 4.1:+31735978 | None:intergenic |
| GTGTAAAAGAAGCATCAAAA+AGG | 0.446259 | 4.1:+31736338 | None:intergenic |
| AAGTTATAAACATGTCTGAC+TGG | 0.451524 | 4.1:-31736136 | MS.gene003668:CDS |
| AACTTACCAAGCAACACAAC+AGG | 0.456566 | 4.1:-31736588 | MS.gene003668:CDS |
| TGAACTTGGTCTTGGACTTG+AGG | 0.462812 | 4.1:+31736486 | None:intergenic |
| GTGTTTAGCAGAGACCTTGT+TGG | 0.467471 | 4.1:+31737054 | None:intergenic |
| CAGAGACCTTGTTGGCATAG+TGG | 0.468511 | 4.1:+31737062 | None:intergenic |
| CCCACATTGATTCTTTAGAC+GGG | 0.468902 | 4.1:-31736061 | MS.gene003668:CDS |
| CAAGTATTCGGAAATGCTAC+TGG | 0.481122 | 4.1:+31736393 | None:intergenic |
| GGTTCTTAGTTCTGAGCCAT+TGG | 0.490954 | 4.1:+31736507 | None:intergenic |
| AAGAATGGAGGACTAATTGA+AGG | 0.493324 | 4.1:+31735993 | None:intergenic |
| AGAGGGGTGTCTTTGGAAGT+GGG | 0.493908 | 4.1:+31737010 | None:intergenic |
| GAGAGGGGTGTCTTTGGAAG+TGG | 0.504462 | 4.1:+31737009 | None:intergenic |
| CCTCTCACCGGCGTAAAGAT+CGG | 0.518466 | 4.1:-31736562 | MS.gene003668:CDS |
| AGATAGAGCAATACTTTGCA+GGG | 0.534009 | 4.1:-31736641 | MS.gene003668:CDS |
| AGGAAACCTGTTGTGTTGCT+TGG | 0.535828 | 4.1:+31736582 | None:intergenic |
| AACAATTCCCGGTTACTGCA+TGG | 0.543090 | 4.1:-31736365 | MS.gene003668:CDS |
| TTCATCTGCAGGGCAGAACA+AGG | 0.547884 | 4.1:+31737117 | None:intergenic |
| TCGAATTAGCGCTAAGCTGA+GGG | 0.554345 | 4.1:+31736090 | None:intergenic |
| AAGTTCTTTCAAAGAAAACA+TGG | 0.562402 | 4.1:-31736434 | MS.gene003668:CDS |
| TCAAACCCAACAACTTCCAA+TGG | 0.565279 | 4.1:-31736523 | MS.gene003668:CDS |
| AGTTTGTTGACTTCATGGAT+AGG | 0.572223 | 4.1:+31736607 | None:intergenic |
| AGGTCTTCCATGCAGTAACC+GGG | 0.572681 | 4.1:+31736358 | None:intergenic |
| CACAACAGGTTTCCTCTCAC+CGG | 0.576278 | 4.1:-31736574 | MS.gene003668:CDS |
| GAGGGGTGTCTTTGGAAGTG+GGG | 0.580604 | 4.1:+31737011 | None:intergenic |
| GGGTGTCTTTGGAAGTGGGG+TGG | 0.581849 | 4.1:+31737014 | None:intergenic |
| CTACATTGTTTGAAGAATGG+AGG | 0.582130 | 4.1:+31735981 | None:intergenic |
| TTCGAATTAGCGCTAAGCTG+AGG | 0.584714 | 4.1:+31736089 | None:intergenic |
| CCGATCTTTACGCCGGTGAG+AGG | 0.585620 | 4.1:+31736562 | None:intergenic |
| AGAGAGCTGCTTCATCTGCA+GGG | 0.589609 | 4.1:+31737107 | None:intergenic |
| GGGAATCTAACTTGAGATTG+TGG | 0.592001 | 4.1:+31736110 | None:intergenic |
| CCCGTCTAAAGAATCAATGT+GGG | 0.595981 | 4.1:+31736061 | None:intergenic |
| CAATATCCACTATGCCAACA+AGG | 0.603596 | 4.1:-31737068 | MS.gene003668:CDS |
| CCACATTGATTCTTTAGACG+GGG | 0.606501 | 4.1:-31736060 | MS.gene003668:CDS |
| CCTTGCAGATATCACAGAGA+GGG | 0.606602 | 4.1:+31736993 | None:intergenic |
| CCCTCTCTGTGATATCTGCA+AGG | 0.608181 | 4.1:-31736993 | MS.gene003668:intron |
| CCCCGTCTAAAGAATCAATG+TGG | 0.617525 | 4.1:+31736060 | None:intergenic |
| GTTTGTGACATGCATCACAC+TGG | 0.618408 | 4.1:+31737149 | None:intergenic |
| TGATGCATGTCACAAACAAG+AGG | 0.622158 | 4.1:-31737143 | MS.gene003668:CDS |
| AGTTATAAACATGTCTGACT+GGG | 0.637692 | 4.1:-31736135 | MS.gene003668:CDS |
| CCATTCTTCAAACAATGTAG+AGG | 0.655261 | 4.1:-31735978 | MS.gene003668:CDS |
| ATCTGCAGGGCAGAACAAGG+AGG | 0.684576 | 4.1:+31737120 | None:intergenic |
| CTTGCAGATATCACAGAGAG+GGG | 0.687405 | 4.1:+31736994 | None:intergenic |
| AGAAGCACCGATCTTTACGC+CGG | 0.690841 | 4.1:+31736555 | None:intergenic |
| CCGTCTAAAGAATCAATGTG+GGG | 0.706719 | 4.1:+31736062 | None:intergenic |
| ACCTTGCAGATATCACAGAG+AGG | 0.718667 | 4.1:+31736992 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTGTTTATCAAAAAAAT+AGG | - | chr4.1:31736327-31736346 | MS.gene003668:CDS | 15.0% |
| !! | CTACTCAATTAATTAAAATA+AGG | - | chr4.1:31736911-31736930 | MS.gene003668:intron | 15.0% |
| !!! | ATAACATTTTTATATATTGC+AGG | - | chr4.1:31736433-31736452 | MS.gene003668:CDS | 15.0% |
| !! | AATTGTTTCAATCAAGTATT+CGG | + | chr4.1:31736747-31736766 | None:intergenic | 20.0% |
| !!! | AACTAATATGACCATATTTT+TGG | + | chr4.1:31736378-31736397 | None:intergenic | 20.0% |
| !!! | AATAAGGTGTATATGTTTTT+TGG | - | chr4.1:31736927-31736946 | MS.gene003668:intron | 20.0% |
| ! | AAGTTCTTTCAAAGAAAACA+TGG | - | chr4.1:31736691-31736710 | MS.gene003668:intron | 25.0% |
| ! | AATAAAAGACTGAGTGATAT+AGG | - | chr4.1:31736408-31736427 | MS.gene003668:CDS | 25.0% |
| ! | TGTTTATAACTTGAAGATCT+TGG | + | chr4.1:31736981-31737000 | None:intergenic | 25.0% |
| !! | ATTTTTATATATTGCAGGAG+AGG | - | chr4.1:31736438-31736457 | MS.gene003668:CDS | 25.0% |
| !! | TTTTCACTTGAAAATGAACT+TGG | + | chr4.1:31736656-31736675 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTGGTATTGTTTC+AGG | - | chr4.1:31736939-31736958 | MS.gene003668:intron | 25.0% |
| AAGTACGTAAGAAATAGAGA+AGG | + | chr4.1:31736164-31736183 | None:intergenic | 30.0% | |
| AAGTTATAAACATGTCTGAC+TGG | - | chr4.1:31736989-31737008 | MS.gene003668:intron | 30.0% | |
| ACCTTACAGAAAACGTTATT+AGG | + | chr4.1:31736812-31736831 | None:intergenic | 30.0% | |
| AGTTATAAACATGTCTGACT+GGG | - | chr4.1:31736990-31737009 | MS.gene003668:intron | 30.0% | |
| CGCTGAAAATCAGTTAAATA+AGG | + | chr4.1:31736279-31736298 | None:intergenic | 30.0% | |
| TACTTGATTGAAACAATTCC+CGG | - | chr4.1:31736749-31736768 | MS.gene003668:intron | 30.0% | |
| TAGATGAAAAATAGCTAGCT+AGG | + | chr4.1:31736894-31736913 | None:intergenic | 30.0% | |
| ! | AAAAGAAAAAAGTGCACTGT+TGG | + | chr4.1:31736844-31736863 | None:intergenic | 30.0% |
| ! | ACCTAATAACGTTTTCTGTA+AGG | - | chr4.1:31736808-31736827 | MS.gene003668:intron | 30.0% |
| ! | TTCTTACGTACTTTTCAACA+GGG | - | chr4.1:31736171-31736190 | MS.gene003668:intron | 30.0% |
| ! | TTTCTTACGTACTTTTCAAC+AGG | - | chr4.1:31736170-31736189 | MS.gene003668:intron | 30.0% |
| !! | AACGTTTTCTGTAAGGTATT+TGG | - | chr4.1:31736815-31736834 | MS.gene003668:intron | 30.0% |
| !! | GTGTAAAAGAAGCATCAAAA+AGG | + | chr4.1:31736790-31736809 | None:intergenic | 30.0% |
| !!! | ACCATATTTTTGGATCGTAT+AGG | + | chr4.1:31736368-31736387 | None:intergenic | 30.0% |
| AAGAATGGAGGACTAATTGA+AGG | + | chr4.1:31737135-31737154 | None:intergenic | 35.0% | |
| AAGATAGAGCAATACTTTGC+AGG | - | chr4.1:31736483-31736502 | MS.gene003668:CDS | 35.0% | |
| AGATAGAGCAATACTTTGCA+GGG | - | chr4.1:31736484-31736503 | MS.gene003668:CDS | 35.0% | |
| CAACATACTAAAGCTGTTGA+AGG | - | chr4.1:31737099-31737118 | MS.gene003668:CDS | 35.0% | |
| CCATTCTTCAAACAATGTAG+AGG | - | chr4.1:31737147-31737166 | MS.gene003668:CDS | 35.0% | |
| CCTCTACATTGTTTGAAGAA+TGG | + | chr4.1:31737150-31737169 | None:intergenic | 35.0% | |
| CTACATTGTTTGAAGAATGG+AGG | + | chr4.1:31737147-31737166 | None:intergenic | 35.0% | |
| CTTGAAAATGAACTTGGTCT+TGG | + | chr4.1:31736650-31736669 | None:intergenic | 35.0% | |
| GCCTATACGATCCAAAAATA+TGG | - | chr4.1:31736364-31736383 | MS.gene003668:CDS | 35.0% | |
| !! | AGTTTGTTGACTTCATGGAT+AGG | + | chr4.1:31736521-31736540 | None:intergenic | 35.0% |
| !! | TGGTAAGTTTGTTGACTTCA+TGG | + | chr4.1:31736526-31736545 | None:intergenic | 35.0% |
| AACTTACCAAGCAACACAAC+AGG | - | chr4.1:31736537-31736556 | MS.gene003668:CDS | 40.0% | |
| CAAGTATTCGGAAATGCTAC+TGG | + | chr4.1:31736735-31736754 | None:intergenic | 40.0% | |
| CAATATCCACTATGCCAACA+AGG | - | chr4.1:31736057-31736076 | MS.gene003668:CDS | 40.0% | |
| CCCGTCTAAAGAATCAATGT+GGG | + | chr4.1:31737067-31737086 | None:intergenic | 40.0% | |
| CCGTCTAAAGAATCAATGTG+GGG | + | chr4.1:31737066-31737085 | None:intergenic | 40.0% | |
| GGGAATCTAACTTGAGATTG+TGG | + | chr4.1:31737018-31737037 | None:intergenic | 40.0% | |
| TCAAACCCAACAACTTCCAA+TGG | - | chr4.1:31736602-31736621 | MS.gene003668:CDS | 40.0% | |
| TGATGCATGTCACAAACAAG+AGG | - | chr4.1:31735982-31736001 | MS.gene003668:CDS | 40.0% | |
| !! | CCACATTGATTCTTTAGACG+GGG | - | chr4.1:31737065-31737084 | MS.gene003668:CDS | 40.0% |
| !! | CCCACATTGATTCTTTAGAC+GGG | - | chr4.1:31737064-31737083 | MS.gene003668:CDS | 40.0% |
| !! | CCCCACATTGATTCTTTAGA+CGG | - | chr4.1:31737063-31737082 | MS.gene003668:CDS | 40.0% |
| AACAATTCCCGGTTACTGCA+TGG | - | chr4.1:31736760-31736779 | MS.gene003668:intron | 45.0% | |
| AAGGTCTTCCATGCAGTAAC+CGG | + | chr4.1:31736771-31736790 | None:intergenic | 45.0% | |
| ACCTTGCAGATATCACAGAG+AGG | + | chr4.1:31736136-31736155 | None:intergenic | 45.0% | |
| CCCCGTCTAAAGAATCAATG+TGG | + | chr4.1:31737068-31737087 | None:intergenic | 45.0% | |
| CCTTGCAGATATCACAGAGA+GGG | + | chr4.1:31736135-31736154 | None:intergenic | 45.0% | |
| CTGAGCCATTGGAAGTTGTT+GGG | + | chr4.1:31736610-31736629 | None:intergenic | 45.0% | |
| CTTGCAGATATCACAGAGAG+GGG | + | chr4.1:31736134-31736153 | None:intergenic | 45.0% | |
| GTGTTTAGCAGAGACCTTGT+TGG | + | chr4.1:31736074-31736093 | None:intergenic | 45.0% | |
| GTTTGTGACATGCATCACAC+TGG | + | chr4.1:31735979-31735998 | None:intergenic | 45.0% | |
| TCGAATTAGCGCTAAGCTGA+GGG | + | chr4.1:31737038-31737057 | None:intergenic | 45.0% | |
| TCTGAGCCATTGGAAGTTGT+TGG | + | chr4.1:31736611-31736630 | None:intergenic | 45.0% | |
| TTCGAATTAGCGCTAAGCTG+AGG | + | chr4.1:31737039-31737058 | None:intergenic | 45.0% | |
| ! | AGGAAACCTGTTGTGTTGCT+TGG | + | chr4.1:31736546-31736565 | None:intergenic | 45.0% |
| !! | GGTTCTTAGTTCTGAGCCAT+TGG | + | chr4.1:31736621-31736640 | None:intergenic | 45.0% |
| !! | TGAACTTGGTCTTGGACTTG+AGG | + | chr4.1:31736642-31736661 | None:intergenic | 45.0% |
| AGAGAGCTGCTTCATCTGCA+GGG | + | chr4.1:31736021-31736040 | None:intergenic | 50.0% | |
| AGGTCTTCCATGCAGTAACC+GGG | + | chr4.1:31736770-31736789 | None:intergenic | 50.0% | |
| CACAACAGGTTTCCTCTCAC+CGG | - | chr4.1:31736551-31736570 | MS.gene003668:CDS | 50.0% | |
| CAGAGACCTTGTTGGCATAG+TGG | + | chr4.1:31736066-31736085 | None:intergenic | 50.0% | |
| CCCTCTCTGTGATATCTGCA+AGG | - | chr4.1:31736132-31736151 | MS.gene003668:CDS | 50.0% | |
| TTCATCTGCAGGGCAGAACA+AGG | + | chr4.1:31736011-31736030 | None:intergenic | 50.0% | |
| !! | AGAAGCACCGATCTTTACGC+CGG | + | chr4.1:31736573-31736592 | None:intergenic | 50.0% |
| !! | AGAGGGGTGTCTTTGGAAGT+GGG | + | chr4.1:31736118-31736137 | None:intergenic | 50.0% |
| !! | ATCACAGAGAGGGGTGTCTT+TGG | + | chr4.1:31736125-31736144 | None:intergenic | 50.0% |
| ATCTGCAGGGCAGAACAAGG+AGG | + | chr4.1:31736008-31736027 | None:intergenic | 55.0% | |
| CAGAGAGCTGCTTCATCTGC+AGG | + | chr4.1:31736022-31736041 | None:intergenic | 55.0% | |
| CCTCTCACCGGCGTAAAGAT+CGG | - | chr4.1:31736563-31736582 | MS.gene003668:CDS | 55.0% | |
| CTGCAACACAACCGCAGTAG+AGG | - | chr4.1:31736244-31736263 | MS.gene003668:intron | 55.0% | |
| GGCTGATACTGCCTCTACTG+CGG | + | chr4.1:31736258-31736277 | None:intergenic | 55.0% | |
| !! | GAGAGGGGTGTCTTTGGAAG+TGG | + | chr4.1:31736119-31736138 | None:intergenic | 55.0% |
| !! | GAGGGGTGTCTTTGGAAGTG+GGG | + | chr4.1:31736117-31736136 | None:intergenic | 55.0% |
| CCGATCTTTACGCCGGTGAG+AGG | + | chr4.1:31736566-31736585 | None:intergenic | 60.0% | |
| ! | GGGTGTCTTTGGAAGTGGGG+TGG | + | chr4.1:31736114-31736133 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 31735968 | 31737179 | 31735968 | ID=MS.gene003668 |
| chr4.1 | mRNA | 31735968 | 31737179 | 31735968 | ID=MS.gene003668.t1;Parent=MS.gene003668 |
| chr4.1 | exon | 31736994 | 31737179 | 31736994 | ID=MS.gene003668.t1.exon1;Parent=MS.gene003668.t1 |
| chr4.1 | CDS | 31736994 | 31737179 | 31736994 | ID=cds.MS.gene003668.t1;Parent=MS.gene003668.t1 |
| chr4.1 | exon | 31736318 | 31736692 | 31736318 | ID=MS.gene003668.t1.exon2;Parent=MS.gene003668.t1 |
| chr4.1 | CDS | 31736318 | 31736692 | 31736318 | ID=cds.MS.gene003668.t1;Parent=MS.gene003668.t1 |
| chr4.1 | exon | 31735968 | 31736186 | 31735968 | ID=MS.gene003668.t1.exon3;Parent=MS.gene003668.t1 |
| chr4.1 | CDS | 31735968 | 31736186 | 31735968 | ID=cds.MS.gene003668.t1;Parent=MS.gene003668.t1 |
| Gene Sequence |
| Protein sequence |
