Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003700.t1 | XP_024642129.1 | 95.4 | 438 | 20 | 0 | 1 | 438 | 1 | 438 | 3.00E-247 | 864 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003700.t1 | Q9SWG3 | 37.6 | 433 | 264 | 5 | 3 | 429 | 57 | 489 | 7.4e-85 | 315.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003700.t1 | A0A2K3N9Z9 | 84.9 | 438 | 66 | 0 | 1 | 438 | 1 | 438 | 2.0e-224 | 787.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene003700.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003700.t1 | MTR_7g446060 | 74.444 | 90 | 23 | 0 | 74 | 163 | 2 | 91 | 1.64e-42 | 147 |
| MS.gene003700.t1 | MTR_6g051425 | 35.266 | 207 | 125 | 2 | 61 | 262 | 89 | 291 | 3.84e-35 | 133 |
| MS.gene003700.t1 | MTR_7g031620 | 66.667 | 81 | 27 | 0 | 3 | 83 | 2 | 82 | 8.67e-29 | 108 |
| MS.gene003700.t1 | MTR_5g023310 | 40.127 | 157 | 27 | 2 | 128 | 284 | 16 | 105 | 6.86e-28 | 107 |
| MS.gene003700.t1 | MTR_1g008290 | 36.242 | 149 | 89 | 2 | 41 | 189 | 2 | 144 | 1.45e-20 | 88.2 |
| MS.gene003700.t1 | MTR_4g035820 | 28.968 | 252 | 154 | 9 | 3 | 237 | 81 | 324 | 2.00e-18 | 88.2 |
| MS.gene003700.t1 | MTR_0856s0010 | 37.398 | 123 | 76 | 1 | 1 | 122 | 38 | 160 | 4.66e-17 | 78.6 |
| MS.gene003700.t1 | MTR_0558s0020 | 26.641 | 259 | 162 | 6 | 1 | 233 | 40 | 296 | 1.31e-16 | 80.5 |
| MS.gene003700.t1 | MTR_8g446020 | 30.345 | 145 | 100 | 1 | 90 | 233 | 112 | 256 | 7.96e-16 | 77.4 |
| MS.gene003700.t1 | MTR_7g446510 | 31.098 | 164 | 112 | 1 | 79 | 241 | 166 | 329 | 4.76e-15 | 76.3 |
| MS.gene003700.t1 | MTR_7g446480 | 31.707 | 164 | 111 | 1 | 79 | 241 | 151 | 314 | 1.28e-14 | 74.7 |
| MS.gene003700.t1 | MTR_6g090505 | 29.448 | 163 | 111 | 2 | 74 | 232 | 68 | 230 | 8.78e-14 | 72.8 |
| MS.gene003700.t1 | MTR_1g070355 | 29.046 | 241 | 144 | 10 | 3 | 227 | 80 | 309 | 1.24e-12 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003700.t1 | AT4G15090 | 37.300 | 437 | 268 | 5 | 1 | 431 | 55 | 491 | 4.82e-98 | 312 |
| MS.gene003700.t1 | AT4G15090 | 37.300 | 437 | 268 | 5 | 1 | 431 | 55 | 491 | 4.82e-98 | 312 |
| MS.gene003700.t1 | AT4G15090 | 37.300 | 437 | 268 | 5 | 1 | 431 | 55 | 491 | 4.82e-98 | 312 |
| MS.gene003700.t1 | AT4G15090 | 37.300 | 437 | 268 | 5 | 1 | 431 | 55 | 491 | 4.82e-98 | 312 |
| MS.gene003700.t1 | AT4G15090 | 37.300 | 437 | 268 | 5 | 1 | 431 | 55 | 491 | 4.82e-98 | 312 |
| MS.gene003700.t1 | AT4G38180 | 36.795 | 443 | 270 | 6 | 1 | 434 | 77 | 518 | 2.02e-96 | 306 |
| MS.gene003700.t1 | AT1G76320 | 37.156 | 436 | 265 | 4 | 1 | 433 | 1 | 430 | 1.46e-93 | 296 |
| MS.gene003700.t1 | AT1G76320 | 37.156 | 436 | 265 | 4 | 1 | 433 | 1 | 430 | 5.78e-93 | 296 |
| MS.gene003700.t1 | AT1G76320 | 37.156 | 436 | 265 | 4 | 1 | 433 | 1 | 430 | 5.78e-93 | 296 |
| MS.gene003700.t1 | AT1G76320 | 37.156 | 436 | 265 | 4 | 1 | 433 | 1 | 430 | 6.56e-93 | 296 |
| MS.gene003700.t1 | AT3G22170 | 34.081 | 446 | 254 | 5 | 1 | 428 | 74 | 497 | 9.96e-85 | 277 |
| MS.gene003700.t1 | AT3G22170 | 34.081 | 446 | 254 | 5 | 1 | 428 | 74 | 497 | 9.96e-85 | 277 |
| MS.gene003700.t1 | AT1G52520 | 33.941 | 439 | 266 | 8 | 1 | 431 | 89 | 511 | 5.97e-80 | 261 |
| MS.gene003700.t1 | AT1G80010 | 34.004 | 447 | 279 | 8 | 1 | 435 | 99 | 541 | 1.51e-76 | 253 |
| MS.gene003700.t1 | AT2G27110 | 32.798 | 436 | 266 | 6 | 1 | 434 | 53 | 463 | 1.69e-68 | 233 |
| MS.gene003700.t1 | AT2G27110 | 32.798 | 436 | 266 | 6 | 1 | 434 | 53 | 463 | 1.69e-68 | 233 |
| MS.gene003700.t1 | AT4G19990 | 33.582 | 402 | 219 | 6 | 19 | 418 | 14 | 369 | 6.10e-65 | 221 |
| MS.gene003700.t1 | AT2G32250 | 32.407 | 432 | 249 | 6 | 1 | 429 | 1 | 392 | 8.98e-65 | 222 |
| MS.gene003700.t1 | AT4G19990 | 32.952 | 437 | 235 | 8 | 3 | 418 | 27 | 426 | 9.14e-65 | 222 |
| MS.gene003700.t1 | AT4G19990 | 32.952 | 437 | 235 | 8 | 3 | 418 | 27 | 426 | 9.14e-65 | 222 |
| MS.gene003700.t1 | AT2G32250 | 32.407 | 432 | 249 | 6 | 1 | 429 | 1 | 392 | 9.61e-65 | 222 |
| MS.gene003700.t1 | AT4G19990 | 32.952 | 437 | 235 | 8 | 3 | 418 | 27 | 426 | 1.09e-64 | 221 |
| MS.gene003700.t1 | AT2G32250 | 32.407 | 432 | 249 | 6 | 1 | 429 | 42 | 433 | 1.14e-64 | 221 |
| MS.gene003700.t1 | AT4G19990 | 32.952 | 437 | 235 | 8 | 3 | 418 | 41 | 440 | 1.27e-64 | 221 |
| MS.gene003700.t1 | AT2G27110 | 36.825 | 315 | 188 | 3 | 121 | 434 | 14 | 318 | 1.72e-64 | 220 |
| MS.gene003700.t1 | AT4G19990 | 32.952 | 437 | 235 | 8 | 3 | 418 | 27 | 426 | 2.03e-64 | 221 |
| MS.gene003700.t1 | AT4G19990 | 32.952 | 437 | 235 | 8 | 3 | 418 | 27 | 426 | 2.03e-64 | 221 |
| MS.gene003700.t1 | AT2G32250 | 32.407 | 432 | 249 | 6 | 1 | 429 | 42 | 433 | 2.05e-64 | 221 |
| MS.gene003700.t1 | AT2G32250 | 32.407 | 432 | 249 | 6 | 1 | 429 | 42 | 433 | 2.05e-64 | 221 |
| MS.gene003700.t1 | AT2G32250 | 32.407 | 432 | 249 | 6 | 1 | 429 | 42 | 433 | 2.76e-64 | 221 |
| MS.gene003700.t1 | AT2G32250 | 32.407 | 432 | 249 | 6 | 1 | 429 | 42 | 433 | 2.76e-64 | 221 |
| MS.gene003700.t1 | AT2G32250 | 32.407 | 432 | 249 | 6 | 1 | 429 | 42 | 433 | 2.76e-64 | 221 |
| MS.gene003700.t1 | AT3G06250 | 30.752 | 439 | 253 | 13 | 1 | 433 | 194 | 587 | 8.23e-57 | 200 |
| MS.gene003700.t1 | AT3G06250 | 30.752 | 439 | 253 | 13 | 1 | 433 | 194 | 587 | 8.23e-57 | 200 |
| MS.gene003700.t1 | AT3G06250 | 30.752 | 439 | 253 | 13 | 1 | 433 | 194 | 587 | 8.23e-57 | 200 |
| MS.gene003700.t1 | AT5G18960 | 30.137 | 438 | 260 | 11 | 1 | 433 | 215 | 611 | 1.10e-56 | 200 |
| MS.gene003700.t1 | AT5G18960 | 30.137 | 438 | 260 | 11 | 1 | 433 | 215 | 611 | 1.10e-56 | 200 |
| MS.gene003700.t1 | AT4G38170 | 35.926 | 270 | 167 | 4 | 168 | 435 | 19 | 284 | 2.79e-55 | 192 |
| MS.gene003700.t1 | AT1G10240 | 29.245 | 424 | 265 | 13 | 12 | 412 | 63 | 474 | 5.20e-49 | 177 |
| MS.gene003700.t1 | AT1G10240 | 29.245 | 424 | 265 | 13 | 12 | 412 | 63 | 474 | 5.20e-49 | 177 |
| MS.gene003700.t1 | AT5G28530 | 23.810 | 441 | 301 | 9 | 3 | 416 | 61 | 493 | 2.02e-33 | 133 |
| MS.gene003700.t1 | AT5G28530 | 23.810 | 441 | 301 | 9 | 3 | 416 | 61 | 493 | 2.02e-33 | 133 |
| MS.gene003700.t1 | AT5G28530 | 24.153 | 443 | 299 | 10 | 3 | 418 | 61 | 493 | 4.98e-33 | 132 |
| MS.gene003700.t1 | AT5G28530 | 22.454 | 432 | 255 | 12 | 3 | 416 | 61 | 430 | 1.58e-18 | 88.6 |
| MS.gene003700.t1 | AT5G28530 | 22.811 | 434 | 253 | 13 | 3 | 418 | 61 | 430 | 4.63e-18 | 87.0 |
Find 77 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATGGCATTTAATGAAAA+AGG | 0.217940 | 4.1:-32156166 | MS.gene003700:CDS |
| AAGGAAAGCATGGCTGATTT+TGG | 0.229716 | 4.1:-32155808 | MS.gene003700:CDS |
| CACCATCTATGGCAGGCTTT+TGG | 0.234277 | 4.1:+32156189 | None:intergenic |
| GCCGTTTAAGAAATGTATTC+AGG | 0.240012 | 4.1:-32156494 | MS.gene003700:CDS |
| CTAAAGTACCATGCCTTGTT+TGG | 0.292037 | 4.1:+32156789 | None:intergenic |
| CTTTAGATGTAACAAGAATA+TGG | 0.300326 | 4.1:-32156772 | MS.gene003700:CDS |
| TGTATGTGAGGGACGAGTTT+TGG | 0.313952 | 4.1:-32155957 | MS.gene003700:CDS |
| ATATGGGGTCTCACATAAAA+AGG | 0.316365 | 4.1:-32156755 | MS.gene003700:CDS |
| TTGGGCTAAGGCCATGATTA+TGG | 0.325447 | 4.1:+32156808 | None:intergenic |
| TCAGGATAAGGCAATGAAAA+AGG | 0.353873 | 4.1:-32156229 | MS.gene003700:CDS |
| CTTATCCTGATCAGTAATAA+TGG | 0.365698 | 4.1:+32156242 | None:intergenic |
| TATGCTCGACGTATGGGTTT+CGG | 0.385909 | 4.1:-32157029 | MS.gene003700:CDS |
| CCCTGAATACATTTCTTAAA+CGG | 0.385994 | 4.1:+32156493 | None:intergenic |
| ATTTGATGAGCGACATTGTT+GGG | 0.401419 | 4.1:-32155986 | MS.gene003700:CDS |
| TCACGGTCAATCTGTGTTGT+TGG | 0.402217 | 4.1:-32156355 | MS.gene003700:CDS |
| AATGCCATAAGCACCATCTA+TGG | 0.404402 | 4.1:+32156178 | None:intergenic |
| TAAAGTACCATGCCTTGTTT+GGG | 0.411064 | 4.1:+32156790 | None:intergenic |
| CCTGCCATAGATGGTGCTTA+TGG | 0.411122 | 4.1:-32156182 | MS.gene003700:CDS |
| AAATGCCATTATTACTGATC+AGG | 0.420229 | 4.1:-32156247 | MS.gene003700:CDS |
| TCCCAAAAGCCTGCCATAGA+TGG | 0.427628 | 4.1:-32156191 | MS.gene003700:CDS |
| ACTGAATGCATGTATATGTT+TGG | 0.428371 | 4.1:-32156865 | MS.gene003700:CDS |
| TGATCAGTAATAATGGCATT+TGG | 0.436971 | 4.1:+32156249 | None:intergenic |
| TGATGATTTACTCCAACAAA+AGG | 0.437844 | 4.1:+32156375 | None:intergenic |
| TTTAGATGTAACAAGAATAT+GGG | 0.441345 | 4.1:-32156771 | MS.gene003700:CDS |
| TCCATGGTTGTTGAAGCAAA+TGG | 0.444231 | 4.1:-32156681 | MS.gene003700:CDS |
| CATGAATTATGCTCGACGTA+TGG | 0.448690 | 4.1:-32157036 | MS.gene003700:CDS |
| AGGTCAGGCGGCTAAGGCTT+GGG | 0.449234 | 4.1:-32156608 | MS.gene003700:CDS |
| AAGGTCAGGCGGCTAAGGCT+TGG | 0.449609 | 4.1:-32156609 | MS.gene003700:CDS |
| CATGATAATGAATGGTTGAA+AGG | 0.452443 | 4.1:-32156012 | MS.gene003700:CDS |
| ATGATAATGAATGGTTGAAA+GGG | 0.468007 | 4.1:-32156011 | MS.gene003700:CDS |
| CACGGTCAATCTGTGTTGTT+GGG | 0.468108 | 4.1:-32156354 | MS.gene003700:CDS |
| GAAACTATATAGACAAGGTC+AGG | 0.479084 | 4.1:-32156623 | MS.gene003700:CDS |
| ATGAATTATGCTCGACGTAT+GGG | 0.482988 | 4.1:-32157035 | MS.gene003700:CDS |
| ATATTTGTTTGTTAAATAAG+TGG | 0.483824 | 4.1:+32156413 | None:intergenic |
| CTAGCATTAAAACACAATGT+AGG | 0.486737 | 4.1:-32156893 | MS.gene003700:CDS |
| GATGATTTACTCCAACAAAA+GGG | 0.488733 | 4.1:+32156376 | None:intergenic |
| CCATGGTTGTTGAAGCAAAT+GGG | 0.489569 | 4.1:-32156680 | MS.gene003700:CDS |
| CATTATTACTGATCAGGATA+AGG | 0.492137 | 4.1:-32156241 | MS.gene003700:CDS |
| GGGTATGAGAATCTCACATT+TGG | 0.494704 | 4.1:-32156660 | MS.gene003700:CDS |
| ACTCCAACAAAAGGGGCAAA+AGG | 0.494706 | 4.1:+32156384 | None:intergenic |
| CCGTTTAAGAAATGTATTCA+GGG | 0.503620 | 4.1:-32156493 | MS.gene003700:CDS |
| AGGCGGCTAAGGCTTGGGAC+AGG | 0.506657 | 4.1:-32156603 | MS.gene003700:CDS |
| TAGACAAGGTCAGGCGGCTA+AGG | 0.507073 | 4.1:-32156614 | MS.gene003700:CDS |
| ACCATGCCTTGTTTGGGCTA+AGG | 0.515793 | 4.1:+32156796 | None:intergenic |
| TAGCATTAAAACACAATGTA+GGG | 0.517008 | 4.1:-32156892 | MS.gene003700:CDS |
| TCAGGGCAGATGCAAGATGT+AGG | 0.518096 | 4.1:-32156476 | MS.gene003700:CDS |
| ATTGAAAGATAAGATTGAAA+AGG | 0.518395 | 4.1:-32155827 | MS.gene003700:CDS |
| GTTACTCTTGACCATAATCA+TGG | 0.522654 | 4.1:-32156819 | MS.gene003700:CDS |
| ACATGGTTAGAATGCATGTA+TGG | 0.523031 | 4.1:-32156279 | MS.gene003700:CDS |
| CCCATTTGCTTCAACAACCA+TGG | 0.544932 | 4.1:+32156680 | None:intergenic |
| CAGGGCAGATGCAAGATGTA+GGG | 0.552979 | 4.1:-32156475 | MS.gene003700:CDS |
| TACTGAAATGACATTTAGCT+CGG | 0.553939 | 4.1:-32157081 | None:intergenic |
| TAAGATTGAAAAGGAAAGCA+TGG | 0.555126 | 4.1:-32155818 | MS.gene003700:CDS |
| CCATAAGCACCATCTATGGC+AGG | 0.556057 | 4.1:+32156182 | None:intergenic |
| TATTTGATGAGCGACATTGT+TGG | 0.566530 | 4.1:-32155987 | MS.gene003700:CDS |
| AATGCATGTATATGTTTGGA+TGG | 0.568180 | 4.1:-32156861 | MS.gene003700:CDS |
| AATGACATTTAGCTCGGAAG+CGG | 0.579804 | 4.1:-32157075 | MS.gene003700:CDS |
| AGCATAATTCATGTAATACA+AGG | 0.583901 | 4.1:+32157046 | None:intergenic |
| GCCTTAGCCCAAACAAGGCA+TGG | 0.585062 | 4.1:-32156797 | MS.gene003700:CDS |
| TCGCTGTGTAGTTGACATCC+CGG | 0.586566 | 4.1:+32155933 | None:intergenic |
| AACTCGTCCCTCACATACAC+AGG | 0.592794 | 4.1:+32155961 | None:intergenic |
| TTAGAGATTAATGATCAAGC+AGG | 0.597773 | 4.1:-32156729 | MS.gene003700:CDS |
| GTTGGGTTCCTGTGTATGTG+AGG | 0.603445 | 4.1:-32155969 | MS.gene003700:CDS |
| TTACTTGGTTATTCACCACA+TGG | 0.605832 | 4.1:-32156296 | MS.gene003700:CDS |
| TCATGGCCTTAGCCCAAACA+AGG | 0.607133 | 4.1:-32156802 | MS.gene003700:CDS |
| ATGAGCTACATGATAATGAA+TGG | 0.609646 | 4.1:-32156020 | MS.gene003700:CDS |
| AGGGCTGCATATGAATACTT+TGG | 0.613424 | 4.1:-32156456 | MS.gene003700:CDS |
| ATGATTTACTCCAACAAAAG+GGG | 0.614284 | 4.1:+32156377 | None:intergenic |
| AAAGTGATTTCGTAGAGAGG+TGG | 0.617973 | 4.1:-32156062 | MS.gene003700:CDS |
| TTGGGTTCCTGTGTATGTGA+GGG | 0.629104 | 4.1:-32155968 | MS.gene003700:CDS |
| TTTGTTGGAGTAAATCATCA+CGG | 0.639777 | 4.1:-32156372 | MS.gene003700:CDS |
| TTAGATGTAACAAGAATATG+GGG | 0.645113 | 4.1:-32156770 | MS.gene003700:CDS |
| GCAAAAGTGATTTCGTAGAG+AGG | 0.653770 | 4.1:-32156065 | MS.gene003700:CDS |
| ACTATATAGACAAGGTCAGG+CGG | 0.657287 | 4.1:-32156620 | MS.gene003700:CDS |
| CTGTAGAAACTATATAGACA+AGG | 0.659640 | 4.1:-32156628 | MS.gene003700:CDS |
| TTGTGCACTCTTATCACATG+AGG | 0.680978 | 4.1:-32156331 | MS.gene003700:CDS |
| ATACATGCATTCTAACCATG+TGG | 0.718210 | 4.1:+32156281 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTGTTTGTTAAATAAG+TGG | + | chr4.1:32156328-32156347 | None:intergenic | 15.0% |
| !! | AGTAAAATAAGTTCGAAAAA+TGG | - | chr4.1:32155736-32155755 | MS.gene003700:intron | 20.0% |
| !! | ATTGAAAGATAAGATTGAAA+AGG | - | chr4.1:32156911-32156930 | MS.gene003700:CDS | 20.0% |
| !! | TTTAGATGTAACAAGAATAT+GGG | - | chr4.1:32155967-32155986 | MS.gene003700:CDS | 20.0% |
| !!! | TAGTCAGTTTTATTATGTAA+TGG | - | chr4.1:32156206-32156225 | MS.gene003700:CDS | 20.0% |
| ! | AGCATAATTCATGTAATACA+AGG | + | chr4.1:32155695-32155714 | None:intergenic | 25.0% |
| ! | CTTATGGCATTTAATGAAAA+AGG | - | chr4.1:32156572-32156591 | MS.gene003700:CDS | 25.0% |
| ! | CTTTAGATGTAACAAGAATA+TGG | - | chr4.1:32155966-32155985 | MS.gene003700:CDS | 25.0% |
| ! | TAGCATTAAAACACAATGTA+GGG | - | chr4.1:32155846-32155865 | MS.gene003700:CDS | 25.0% |
| ! | TTAGATGTAACAAGAATATG+GGG | - | chr4.1:32155968-32155987 | MS.gene003700:CDS | 25.0% |
| !! | ATGATAATGAATGGTTGAAA+GGG | - | chr4.1:32156727-32156746 | MS.gene003700:CDS | 25.0% |
| !!! | GTTTTATTATGTAATGGATG+TGG | - | chr4.1:32156212-32156231 | MS.gene003700:CDS | 25.0% |
| !!! | TGTATTGCAATACTTTTTGT+AGG | - | chr4.1:32157066-32157085 | MS.gene003700:CDS | 25.0% |
| AAATGCCATTATTACTGATC+AGG | - | chr4.1:32156491-32156510 | MS.gene003700:CDS | 30.0% | |
| AATGCATGTATATGTTTGGA+TGG | - | chr4.1:32155877-32155896 | MS.gene003700:CDS | 30.0% | |
| ACTGAATGCATGTATATGTT+TGG | - | chr4.1:32155873-32155892 | MS.gene003700:CDS | 30.0% | |
| ATGATTTACTCCAACAAAAG+GGG | + | chr4.1:32156364-32156383 | None:intergenic | 30.0% | |
| CATTATTACTGATCAGGATA+AGG | - | chr4.1:32156497-32156516 | MS.gene003700:CDS | 30.0% | |
| CCCTGAATACATTTCTTAAA+CGG | + | chr4.1:32156248-32156267 | None:intergenic | 30.0% | |
| CCGTTTAAGAAATGTATTCA+GGG | - | chr4.1:32156245-32156264 | MS.gene003700:CDS | 30.0% | |
| CTAGCATTAAAACACAATGT+AGG | - | chr4.1:32155845-32155864 | MS.gene003700:CDS | 30.0% | |
| CTGTAGAAACTATATAGACA+AGG | - | chr4.1:32156110-32156129 | MS.gene003700:CDS | 30.0% | |
| CTTATCCTGATCAGTAATAA+TGG | + | chr4.1:32156499-32156518 | None:intergenic | 30.0% | |
| GATGATTTACTCCAACAAAA+GGG | + | chr4.1:32156365-32156384 | None:intergenic | 30.0% | |
| TAAGATTGAAAAGGAAAGCA+TGG | - | chr4.1:32156920-32156939 | MS.gene003700:CDS | 30.0% | |
| TGATCAGTAATAATGGCATT+TGG | + | chr4.1:32156492-32156511 | None:intergenic | 30.0% | |
| TGATGATTTACTCCAACAAA+AGG | + | chr4.1:32156366-32156385 | None:intergenic | 30.0% | |
| TTAGAGATTAATGATCAAGC+AGG | - | chr4.1:32156009-32156028 | MS.gene003700:CDS | 30.0% | |
| TTTGTTGGAGTAAATCATCA+CGG | - | chr4.1:32156366-32156385 | MS.gene003700:CDS | 30.0% | |
| ! | AAATTCTCTGAATTTTGCGT+TGG | + | chr4.1:32157024-32157043 | None:intergenic | 30.0% |
| ! | AGGATGCTAAAACTTTTACT+TGG | - | chr4.1:32156427-32156446 | MS.gene003700:CDS | 30.0% |
| ! | ATGAGCTACATGATAATGAA+TGG | - | chr4.1:32156718-32156737 | MS.gene003700:CDS | 30.0% |
| ! | ATTGCTTGTGTAAGTCATTT+TGG | - | chr4.1:32156969-32156988 | MS.gene003700:CDS | 30.0% |
| ! | CAGTAGAAATTTTAGATCCA+TGG | - | chr4.1:32156041-32156060 | MS.gene003700:CDS | 30.0% |
| ! | CATGATAATGAATGGTTGAA+AGG | - | chr4.1:32156726-32156745 | MS.gene003700:CDS | 30.0% |
| ! | GAGTATTTACCAAACTTTTC+AGG | + | chr4.1:32156600-32156619 | None:intergenic | 30.0% |
| !! | AAAAAGGTACCTGAAAAGTT+TGG | - | chr4.1:32156588-32156607 | MS.gene003700:CDS | 30.0% |
| !! | TTGCGTTGGTAAATGATTTT+TGG | + | chr4.1:32157010-32157029 | None:intergenic | 30.0% |
| !!! | TGTGTTTTAATGCTAGCATT+TGG | + | chr4.1:32155841-32155860 | None:intergenic | 30.0% |
| ACATGGTTAGAATGCATGTA+TGG | - | chr4.1:32156459-32156478 | MS.gene003700:CDS | 35.0% | |
| AGTTCGAAAAATGGAGATGA+TGG | - | chr4.1:32155745-32155764 | MS.gene003700:intron | 35.0% | |
| ATACATGCATTCTAACCATG+TGG | + | chr4.1:32156460-32156479 | None:intergenic | 35.0% | |
| ATATGGGGTCTCACATAAAA+AGG | - | chr4.1:32155983-32156002 | MS.gene003700:CDS | 35.0% | |
| ATGAATTATGCTCGACGTAT+GGG | - | chr4.1:32155703-32155722 | MS.gene003700:intron | 35.0% | |
| ATTTGATGAGCGACATTGTT+GGG | - | chr4.1:32156752-32156771 | MS.gene003700:CDS | 35.0% | |
| GAAACTATATAGACAAGGTC+AGG | - | chr4.1:32156115-32156134 | MS.gene003700:CDS | 35.0% | |
| GCCGTTTAAGAAATGTATTC+AGG | - | chr4.1:32156244-32156263 | MS.gene003700:CDS | 35.0% | |
| GTTACTCTTGACCATAATCA+TGG | - | chr4.1:32155919-32155938 | MS.gene003700:CDS | 35.0% | |
| TATTTGATGAGCGACATTGT+TGG | - | chr4.1:32156751-32156770 | MS.gene003700:CDS | 35.0% | |
| TCAGGATAAGGCAATGAAAA+AGG | - | chr4.1:32156509-32156528 | MS.gene003700:CDS | 35.0% | |
| TTACTTGGTTATTCACCACA+TGG | - | chr4.1:32156442-32156461 | MS.gene003700:CDS | 35.0% | |
| !! | TAAAGTACCATGCCTTGTTT+GGG | + | chr4.1:32155951-32155970 | None:intergenic | 35.0% |
| AAAGTGATTTCGTAGAGAGG+TGG | - | chr4.1:32156676-32156695 | MS.gene003700:CDS | 40.0% | |
| AATGCCATAAGCACCATCTA+TGG | + | chr4.1:32156563-32156582 | None:intergenic | 40.0% | |
| ACTATATAGACAAGGTCAGG+CGG | - | chr4.1:32156118-32156137 | MS.gene003700:CDS | 40.0% | |
| AGGGCTGCATATGAATACTT+TGG | - | chr4.1:32156282-32156301 | MS.gene003700:CDS | 40.0% | |
| CATGAATTATGCTCGACGTA+TGG | - | chr4.1:32155702-32155721 | MS.gene003700:intron | 40.0% | |
| CCATGGTTGTTGAAGCAAAT+GGG | - | chr4.1:32156058-32156077 | MS.gene003700:CDS | 40.0% | |
| GCAAAAGTGATTTCGTAGAG+AGG | - | chr4.1:32156673-32156692 | MS.gene003700:CDS | 40.0% | |
| GGGTATGAGAATCTCACATT+TGG | - | chr4.1:32156078-32156097 | MS.gene003700:CDS | 40.0% | |
| TCCATGGTTGTTGAAGCAAA+TGG | - | chr4.1:32156057-32156076 | MS.gene003700:CDS | 40.0% | |
| TTGTGCACTCTTATCACATG+AGG | - | chr4.1:32156407-32156426 | MS.gene003700:CDS | 40.0% | |
| ! | CTAAAGTACCATGCCTTGTT+TGG | + | chr4.1:32155952-32155971 | None:intergenic | 40.0% |
| !! | AAGGAAAGCATGGCTGATTT+TGG | - | chr4.1:32156930-32156949 | MS.gene003700:CDS | 40.0% |
| ACTCCAACAAAAGGGGCAAA+AGG | + | chr4.1:32156357-32156376 | None:intergenic | 45.0% | |
| CCCATTTGCTTCAACAACCA+TGG | + | chr4.1:32156061-32156080 | None:intergenic | 45.0% | |
| GGCAATGAAAAAGGCGATTG+AGG | - | chr4.1:32156518-32156537 | MS.gene003700:CDS | 45.0% | |
| TATGCTCGACGTATGGGTTT+CGG | - | chr4.1:32155709-32155728 | MS.gene003700:intron | 45.0% | |
| TCACGGTCAATCTGTGTTGT+TGG | - | chr4.1:32156383-32156402 | MS.gene003700:CDS | 45.0% | |
| TTGGGCTAAGGCCATGATTA+TGG | + | chr4.1:32155933-32155952 | None:intergenic | 45.0% | |
| TTGGGTTCCTGTGTATGTGA+GGG | - | chr4.1:32156770-32156789 | MS.gene003700:CDS | 45.0% | |
| ! | ACCATCTATGGCAGGCTTTT+GGG | + | chr4.1:32156551-32156570 | None:intergenic | 45.0% |
| ! | ATGCCTTTTGCCCCTTTTGT+TGG | - | chr4.1:32156351-32156370 | MS.gene003700:CDS | 45.0% |
| ! | CACGGTCAATCTGTGTTGTT+GGG | - | chr4.1:32156384-32156403 | MS.gene003700:CDS | 45.0% |
| ! | GTATGTGAGGGACGAGTTTT+GGG | - | chr4.1:32156782-32156801 | MS.gene003700:CDS | 45.0% |
| ! | TGTATGTGAGGGACGAGTTT+TGG | - | chr4.1:32156781-32156800 | MS.gene003700:CDS | 45.0% |
| AACTCGTCCCTCACATACAC+AGG | + | chr4.1:32156780-32156799 | None:intergenic | 50.0% | |
| CAGGGCAGATGCAAGATGTA+GGG | - | chr4.1:32156263-32156282 | MS.gene003700:CDS | 50.0% | |
| CCATAAGCACCATCTATGGC+AGG | + | chr4.1:32156559-32156578 | None:intergenic | 50.0% | |
| CCTGCCATAGATGGTGCTTA+TGG | - | chr4.1:32156556-32156575 | MS.gene003700:CDS | 50.0% | |
| GTTGGGTTCCTGTGTATGTG+AGG | - | chr4.1:32156769-32156788 | MS.gene003700:CDS | 50.0% | |
| TCAGGGCAGATGCAAGATGT+AGG | - | chr4.1:32156262-32156281 | MS.gene003700:CDS | 50.0% | |
| TCCCAAAAGCCTGCCATAGA+TGG | - | chr4.1:32156547-32156566 | MS.gene003700:CDS | 50.0% | |
| TCGCTGTGTAGTTGACATCC+CGG | + | chr4.1:32156808-32156827 | None:intergenic | 50.0% | |
| ! | CACCATCTATGGCAGGCTTT+TGG | + | chr4.1:32156552-32156571 | None:intergenic | 50.0% |
| ! | TCATGGCCTTAGCCCAAACA+AGG | - | chr4.1:32155936-32155955 | MS.gene003700:CDS | 50.0% |
| !! | ACCATGCCTTGTTTGGGCTA+AGG | + | chr4.1:32155945-32155964 | None:intergenic | 50.0% |
| GCCTTAGCCCAAACAAGGCA+TGG | - | chr4.1:32155941-32155960 | MS.gene003700:CDS | 55.0% | |
| TAGACAAGGTCAGGCGGCTA+AGG | - | chr4.1:32156124-32156143 | MS.gene003700:CDS | 55.0% | |
| AAGGTCAGGCGGCTAAGGCT+TGG | - | chr4.1:32156129-32156148 | MS.gene003700:CDS | 60.0% | |
| AGGTCAGGCGGCTAAGGCTT+GGG | - | chr4.1:32156130-32156149 | MS.gene003700:CDS | 60.0% | |
| !!! | GTGAGGGACGAGTTTTGGGC+CGG | - | chr4.1:32156786-32156805 | MS.gene003700:CDS | 60.0% |
| !!! | TGAGGGACGAGTTTTGGGCC+GGG | - | chr4.1:32156787-32156806 | MS.gene003700:CDS | 60.0% |
| AGGCGGCTAAGGCTTGGGAC+AGG | - | chr4.1:32156135-32156154 | MS.gene003700:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 32155664 | 32157096 | 32155664 | ID=MS.gene003700 |
| chr4.1 | mRNA | 32155664 | 32157096 | 32155664 | ID=MS.gene003700.t1;Parent=MS.gene003700 |
| chr4.1 | exon | 32155783 | 32157096 | 32155783 | ID=MS.gene003700.t1.exon1;Parent=MS.gene003700.t1 |
| chr4.1 | CDS | 32155783 | 32157096 | 32155783 | ID=cds.MS.gene003700.t1;Parent=MS.gene003700.t1 |
| chr4.1 | exon | 32155664 | 32155672 | 32155664 | ID=MS.gene003700.t1.exon2;Parent=MS.gene003700.t1 |
| chr4.1 | CDS | 32155664 | 32155672 | 32155664 | ID=cds.MS.gene003700.t1;Parent=MS.gene003700.t1 |
| Gene Sequence |
| Protein sequence |
