AlfalfaGEDB | MS.gene003748

M. sativa cultivar XinJiangDaYe / MS.gene003748

KEGG: K15032
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003748.t1	RHN61288.1	97.7	617	14	0	1	617	1	617	2.40E-258	901.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003748.t1	F4IHL3	67.8	593	176	3	32	609	24	616	1.5e-139	498.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003748.t1	A0A396I8Z7	97.7	617	14	0	1	617	1	617	1.7e-258	901.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene003748.t1	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003748.t1	MTR_4g070060	97.731	617	14	0	1	617	1	617	0.0	1244
MS.gene003748.t1	MTR_5g068860	27.887	355	248	4	235	587	136	484	5.83e-37	145
MS.gene003748.t1	MTR_1g115415	25.424	354	254	4	235	585	104	450	4.05e-34	136
MS.gene003748.t1	MTR_6g003960	28.037	321	227	4	266	585	270	587	1.92e-31	129
MS.gene003748.t1	MTR_4g084630	25.850	294	213	5	296	586	28	319	1.04e-30	123
MS.gene003748.t1	MTR_2g034600	27.402	281	167	5	349	595	215	492	8.54e-25	108
MS.gene003748.t1	MTR_2g034600	24.153	236	167	5	271	504	244	469	2.59e-17	85.5
MS.gene003748.t1	MTR_2g034600	27.402	281	167	5	349	595	276	553	1.15e-24	108
MS.gene003748.t1	MTR_2g034600	24.153	236	167	5	271	504	305	530	3.57e-17	85.5
MS.gene003748.t1	MTR_2g034600	27.402	281	167	5	349	595	280	557	1.51e-24	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003748.t1	AT2G21710	60.202	593	221	3	32	609	24	616	0.0	753
MS.gene003748.t1	AT2G21710	60.976	533	193	3	32	549	24	556	0.0	681
MS.gene003748.t1	AT2G21710	61.090	532	192	3	32	548	24	555	0.0	681
MS.gene003748.t1	AT4G02990	28.125	352	245	4	238	587	147	492	1.99e-35	140
MS.gene003748.t1	AT4G02990	28.125	352	245	4	238	587	147	492	1.99e-35	140
MS.gene003748.t1	AT2G44020	24.737	380	266	5	235	611	109	471	9.29e-34	135
MS.gene003748.t1	AT1G78930	29.577	355	240	7	234	585	227	574	1.65e-33	135
MS.gene003748.t1	AT1G78930	23.774	265	196	3	203	462	260	523	1.81e-14	77.0
MS.gene003748.t1	AT4G38160	26.488	336	203	8	257	586	24	321	5.19e-31	124
MS.gene003748.t1	AT4G38160	26.488	336	203	8	257	586	24	321	5.19e-31	124

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Find 127 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACCCCACAGTTTCC+AGG	0.379101	4.1:+32745773	MS.gene003748:CDS
AAAATGAGCTTAGCTATCTG+AGG	0.626607	4.1:-32746874	None:intergenic
AAAGTCGAATTTGAATATTC+CGG	0.331125	4.1:-32746055	None:intergenic
AAATTGAACCTGGAAACTGT+GGG	0.637519	4.1:-32745781	None:intergenic
AAATTTGGAATTACTTATAC+TGG	0.310485	4.1:+32745962	MS.gene003748:CDS
AAGCTGTAAGATAACAACTT+CGG	0.628272	4.1:-32747105	None:intergenic
AAGGCTATAAGTGAGTAGAG+TGG	0.574897	4.1:-32747849	None:intergenic
AAGTCAACACAAAAGACCAT+TGG	0.586719	4.1:-32747553	None:intergenic
AATGCTTACAATTAAACCAA+TGG	0.584764	4.1:+32747537	MS.gene003748:CDS
AATTACTTATACTGGTAATT+TGG	0.209026	4.1:+32745970	MS.gene003748:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAAAAGACATACCAC+AGG	-	chr4.1:32747890-32747909	None:intergenic	30.0%
AAGCTGTAAGATAACAACTT+CGG	-	chr4.1:32747108-32747127	None:intergenic	30.0%
AATCAGAGTGATAAACTTTG+TGG	-	chr4.1:32747962-32747981	None:intergenic	30.0%
ACATCTTTGATTAGAGTTGT+CGG	+	chr4.1:32746302-32746321	MS.gene003748:intron	30.0%
ATACTGGTAATTTGGTTGAT+AGG	+	chr4.1:32745978-32745997	MS.gene003748:CDS	30.0%
ATAGCCTTTACAAGAAGATT+AGG	+	chr4.1:32747864-32747883	MS.gene003748:CDS	30.0%
CACTGAAGAAAATATTCCAA+AGG	+	chr4.1:32748079-32748098	MS.gene003748:CDS	30.0%
CATTTCTTCAATTCTCTAGA+TGG	+	chr4.1:32746827-32746846	MS.gene003748:intron	30.0%
GTCTAAATATCATTGATACC+TGG	-	chr4.1:32748324-32748343	None:intergenic	30.0%
TAACCATAATACCTGATAAG+TGG	-	chr4.1:32746124-32746143	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	32745497	32748649	32745497	ID=MS.gene003748
chr4.1	mRNA	32745497	32748649	32745497	ID=MS.gene003748.t1;Parent=MS.gene003748
chr4.1	exon	32745497	32746131	32745497	ID=MS.gene003748.t1.exon1;Parent=MS.gene003748.t1
chr4.1	CDS	32745497	32746131	32745497	ID=cds.MS.gene003748.t1;Parent=MS.gene003748.t1
chr4.1	exon	32746846	32747254	32746846	ID=MS.gene003748.t1.exon2;Parent=MS.gene003748.t1
chr4.1	CDS	32746846	32747254	32746846	ID=cds.MS.gene003748.t1;Parent=MS.gene003748.t1
chr4.1	exon	32747382	32747597	32747382	ID=MS.gene003748.t1.exon3;Parent=MS.gene003748.t1
chr4.1	CDS	32747382	32747597	32747382	ID=cds.MS.gene003748.t1;Parent=MS.gene003748.t1
chr4.1	exon	32747785	32747892	32747785	ID=MS.gene003748.t1.exon4;Parent=MS.gene003748.t1
chr4.1	CDS	32747785	32747892	32747785	ID=cds.MS.gene003748.t1;Parent=MS.gene003748.t1
chr4.1	exon	32748050	32748324	32748050	ID=MS.gene003748.t1.exon5;Parent=MS.gene003748.t1
chr4.1	CDS	32748050	32748324	32748050	ID=cds.MS.gene003748.t1;Parent=MS.gene003748.t1
chr4.1	exon	32748439	32748649	32748439	ID=MS.gene003748.t1.exon6;Parent=MS.gene003748.t1
chr4.1	CDS	32748439	32748649	32748439	ID=cds.MS.gene003748.t1;Parent=MS.gene003748.t1

Gene Sequence

>MS.gene003748

ATGCTTCTTTCATATCAAAAACACACTCTTTACCTTCCTCATTCTTCTATCCACACCCTCAAAAACCCAAAACTCACCACCATCGTCAACTGCCAAAACCCAAACGAACAACACCAAAACCAACCAATTCCCAGAAGACACAATGCAAAATCAACATCATTTCTCATTCACCACCTTACACAAAAAAACACGAACACTAATCCTTCACCAACTTCACTACAAGACCCAACACCTCACGAAGAAAAAATTAAACTTTTAGAACTTTCCTTAGTAAGAAAAAGAACCCCACAGTTTCCAGGTTCAATTTACGCTCAATCTCCAAGTGATCCTGATGTGGGTTCTTCACTTCCTCCATTGAGTACCCTTTTTCGGTGTGATGATGAAGAAGAGGGAATGATTATGGAAGCTATTGAGATTCGTAGGAAGGTTACTGAAGAGGTTTTTAAAGAAGCAATGCGGAAGGGTAAATTTGGAATTACTTATACTGGTAATTTGGTTGATAGGTTGGGTGGTTTTATTGATTATGTTATGATTGAAGCTGCTAATTTGAAAAGATTGCCGGAATATTCAAATTCGACTTTTAATTTAAGGGCTAAAACTGTTATTGAAGATTCTCAAGTTGTGCCACTTATCAGGTATTATGGTTATGAATTGAGATTAGTGTTGGTTATGAGTTGTTAGTTTTTTTATCTATGAAGCATTGACACGGACACCTGACACGCCATTGACACATTGACATCGGTAGTAATTTGAGAAAAAGAATTATTTGAATGTAACCAGGTGTGTGTTGTGTCGGACACCAGACACATCTTTGATTAGAGTTGTCGGTGTTAAAAAGGTTTTTATTGTTTTGAAGTTGTTGGTAAGCTGTTTGATTTATTGTTCATGTGAAACAAAACCAACTTACTTGTTGTGTTGTGTGTATTGTTGGAAATGGATTGCCATAGCCAATAATGAGGCATTCACTCATTCGGCACATATGTGGTCATTGGAATGAAATCTGGTGGGCCAAATTTTCAGTGCATATTTTGATTTAGAGAAATGCTACGAACATTCTCTAGCACTCACTCTTTTATTGAGTGAAATCATGTGTGTCTCGTCACTTCATGTGGGATTCATTTCGAAAGTGTGGGACCCACATGTGTTTCACCGAATAAGAGAGTGAGTGCTAGAGAAAGTGTTTATAACACTTTTCTTTGATTTATTTTTTAAATAAACAGTACAAGCTTGAAATATGAATCGTCCGATTTCGAGAAAGTGTTCACTCACGCTTTTATTTTGATTTGCGTATTGTTGTTAGTTTTTTTTAAGTTTTTGTATTTTGATTGTGCATTTCTTCAATTCTCTAGATGGTTGAAGCATAATTCTCTATCGTATCCTCAGATAGCTAAGCTCATTTTGATGTCAAGAGGGAAACTTGAGTCTATAAGGAACCGTGTTGAGTGGTTGAAGTCGGTGTTCGTTAAGGGAGAGTTTATTGGGGATGCAATGTTAAAAAGTGGAGATAATGTTTTGCTGCGGAGTGACGGGGAGTTGGATGAGATTGTTGATTATTTAGAGTTTAATGGAGTCAGGAGGGAATGGATGGGTTATGTTGTGAGTCGGTGTCCGAAGTTGTTATCTTACAGCTTGGAAGAAGTGAAGGATCGTGTGCAGTTCTATCTGGATATGGGTTTAGATGCGAAGGATTTTGGCACCATGGTTTTTGATTTTCCTAAAGCTCTCGGTCACTATACTTTGGAAGAAATGAGCCGAAAGGTACATTAATTTTTGACAAACTTTATAGGGTTAACGTCATATTGTAATATATCCTTGTTGTCTTCTCTCATACTTCAATAGTTTCTGATATACAAACAAAGTATGATGCAACAATTGTAAATTTCAGGTTGATTACTTGAAAGAATTTGGGCTTGAAAGTAAGGATGTTGGTAAGTTGCTTGCATTTCGGCCACAATTGATGGCGTGCAGCATTGAAGAACAATGGAAACCTCTTGTTAAGTATCTGTACTATTATGGGATTACCCGAGATGGGATGAGGAGAATGCTTACAATTAAACCAATGGTCTTTTGTGTTGACTTGGAGATGACTATTGTGCCAAAGGTATGTAAATTTTTTTATTTTTTTTCTCTTCTAAGTTGACACTTGCATTTTTTTTTTATTTTTATAATGACACTTGCATTGTTTAATATTGATGTCTAGTAGATTCATAAATAAAATTTCCAATGGTTTCTGTTATGTTTCCTGATGATAAAATACTGACAATTTTGTTACATATTTTATCATGAAGGTAAAGTTTTTTCAGGACCTAGGGGTTCGAAATGACGGGATTGCCAACATGCTTGTAAAATTTCCCACTCTACTCACTTATAGCCTTTACAAGAAGATTAGGCCTGTGGTATGTCTTTTTTCTTTGCCGCTACAAAATTTGTTACCATTAAGTAATTTTTCTGAAGCATCACCACCACAAAGTTTATCACTCTGATTACATTTATAAACTGTCTGATCAAGAGGCCTCAATTAACTAATCTGCTGAGTTTGCTTGTTGTATATAGGTCATATTCTTGATGACCAAGGCTGGAGTCACTGAAGAAAATATTCCAAAGGTTATAGCTCTTGGACCTGAGCTCTTGGGATGCAGCATAGTACATAAGCTTGAAGGAAATGTAAAGTATTATTTGTCTCTCGGCATACGTCTTCGGCAACTGGGTGAAATGATTGCTGATTTCCCAATGCTGCTCAGATACAATATAGACGTTCTTCGTCCTAAGTATACTTATTTGCGCAAAACCATGGTCCGAACTTTGCACGATGTCATTGAGTTTCCCAGGTATCAATGATATTTAGACCATAGATACACAATTTTTAAAAATCTTGTTTGCTTGATGTTTTTCATTCCATTGCATATTCAACTTTAAATATGCAATTCTCTTGCTGTTATCAGGTTTTTCAGCTATTCCCTCGAGGGTCGAATTATTCCAAGACACAAGGTTCTGGTGGAGAATCAGATTAATGTCAAGCTAAAATGCATGTTAGCTTGCACAGATGAAGAATTTAACAACATGGTCAAGAATATGATTAGAAAACGCCATAAACTTCAATCTACTGTCATGAAAGAGGATACTAAGCATCCCCAATCTACAGCCCAGACGTAA

Protein sequence

>MS.gene003748.t1

MLLSYQKHTLYLPHSSIHTLKNPKLTTIVNCQNPNEQHQNQPIPRRHNAKSTSFLIHHLTQKNTNTNPSPTSLQDPTPHEEKIKLLELSLVRKRTPQFPGSIYAQSPSDPDVGSSLPPLSTLFRCDDEEEGMIMEAIEIRRKVTEEVFKEAMRKGKFGITYTGNLVDRLGGFIDYVMIEAANLKRLPEYSNSTFNLRAKTVIEDSQVVPLIRWLKHNSLSYPQIAKLILMSRGKLESIRNRVEWLKSVFVKGEFIGDAMLKSGDNVLLRSDGELDEIVDYLEFNGVRREWMGYVVSRCPKLLSYSLEEVKDRVQFYLDMGLDAKDFGTMVFDFPKALGHYTLEEMSRKVDYLKEFGLESKDVGKLLAFRPQLMACSIEEQWKPLVKYLYYYGITRDGMRRMLTIKPMVFCVDLEMTIVPKVKFFQDLGVRNDGIANMLVKFPTLLTYSLYKKIRPVVIFLMTKAGVTEENIPKVIALGPELLGCSIVHKLEGNVKYYLSLGIRLRQLGEMIADFPMLLRYNIDVLRPKYTYLRKTMVRTLHDVIEFPRFFSYSLEGRIIPRHKVLVENQINVKLKCMLACTDEEFNNMVKNMIRKRHKLQSTVMKEDTKHPQSTAQT