AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00382

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00382.t1 MTR_2g437200 85.427 398 56 1 1 396 1 398 0.0 684
MS.gene00382.t1 MTR_2g438020 81.250 384 71 1 29 412 70 452 0.0 625
MS.gene00382.t1 MTR_2g437240 74.341 417 103 2 1 414 1 416 0.0 598
MS.gene00382.t1 MTR_2g437960 65.633 387 96 2 30 414 53 404 5.92e-175 494
MS.gene00382.t1 MTR_2g437960 65.714 385 95 2 30 412 53 402 1.80e-174 494
MS.gene00382.t1 MTR_2g437170 64.646 396 97 4 21 408 42 402 1.12e-171 487
MS.gene00382.t1 MTR_2g437120 64.872 390 99 3 22 409 43 396 1.33e-168 479
MS.gene00382.t1 MTR_2g437150 62.155 399 108 4 21 411 42 405 4.75e-166 472
MS.gene00382.t1 MTR_2g076320 62.629 388 108 2 29 414 49 401 2.14e-161 460
MS.gene00382.t1 MTR_2g437180 60.584 411 113 7 6 411 29 395 8.84e-159 453
MS.gene00382.t1 MTR_2g437160 60.152 394 115 4 21 408 50 407 3.06e-158 452
MS.gene00382.t1 MTR_2g437100 62.629 388 98 4 21 396 43 395 5.68e-158 452
MS.gene00382.t1 MTR_2g437990 61.917 386 109 3 29 412 49 398 1.01e-157 452
MS.gene00382.t1 MTR_2g438010 59.536 388 120 2 29 414 69 421 1.14e-154 444
MS.gene00382.t1 MTR_2g437940 59.367 411 98 6 6 414 29 372 4.81e-150 430
MS.gene00382.t1 MTR_2g437130 56.701 388 130 2 25 412 38 387 6.91e-148 425
MS.gene00382.t1 MTR_2g437080 48.462 390 161 3 19 406 29 380 4.61e-124 364
MS.gene00382.t1 MTR_2g437260 47.202 411 171 6 1 403 1 373 3.09e-121 358
MS.gene00382.t1 MTR_2g437060 48.196 388 161 4 19 404 44 393 4.35e-118 350
MS.gene00382.t1 MTR_2g437020 47.462 394 164 5 20 409 29 383 1.14e-116 346
MS.gene00382.t1 MTR_2g437040 47.301 389 165 3 22 408 32 382 3.18e-116 345
MS.gene00382.t1 MTR_4g119550 45.407 381 169 3 25 404 46 388 1.92e-113 338
MS.gene00382.t1 MTR_2g436440 45.050 404 180 4 9 409 25 389 8.51e-112 333
MS.gene00382.t1 MTR_2g436400 44.211 380 172 3 22 399 39 380 1.71e-104 315
MS.gene00382.t1 MTR_2g437030 42.786 402 186 5 11 409 109 469 3.24e-104 317
MS.gene00382.t1 MTR_2g436460 44.533 375 169 4 24 397 41 377 5.51e-96 293
MS.gene00382.t1 MTR_2g437160 73.370 184 49 0 225 408 133 316 1.67e-92 281
MS.gene00382.t1 MTR_2g437160 50.538 93 40 2 21 107 50 142 2.55e-19 88.6
MS.gene00382.t1 MTR_4g119580 42.149 363 172 2 32 394 46 370 1.64e-89 276
MS.gene00382.t1 MTR_4g120380 41.622 370 178 2 24 393 38 369 1.51e-88 273
MS.gene00382.t1 MTR_4g120380 40.771 363 176 3 24 385 38 362 2.48e-82 259
MS.gene00382.t1 MTR_2g019810 40.806 397 167 8 22 396 9 359 3.24e-77 244
MS.gene00382.t1 MTR_2g019840 38.196 377 187 7 24 396 37 371 7.44e-69 223
MS.gene00382.t1 MTR_2g437090 59.146 164 67 0 239 402 1 164 2.37e-63 201
MS.gene00382.t1 MTR_4g119570 37.698 252 121 2 143 394 14 229 2.02e-49 167
MS.gene00382.t1 MTR_3g450500 29.301 372 217 6 32 396 40 372 1.77e-46 164
MS.gene00382.t1 MTR_4g007490 28.726 369 218 8 32 394 39 368 5.52e-40 147
MS.gene00382.t1 MTR_3g085240 46.193 197 49 5 1 186 21 171 1.67e-36 134
MS.gene00382.t1 MTR_3g085240 60.000 90 19 1 298 387 176 248 6.17e-25 103
MS.gene00382.t1 MTR_8g080990 28.916 332 197 5 61 390 74 368 3.33e-32 125
MS.gene00382.t1 MTR_2g436370 35.961 203 78 3 22 222 38 190 1.97e-30 116
MS.gene00382.t1 MTR_8g081000 26.627 338 209 5 59 394 85 385 1.37e-28 116
MS.gene00382.t1 MTR_8g081000 26.923 338 208 6 59 394 85 385 1.91e-28 115
MS.gene00382.t1 MTR_8g081000 26.923 338 208 6 59 394 85 385 1.96e-28 115
MS.gene00382.t1 MTR_4g049400 46.875 128 57 3 21 137 37 164 3.83e-28 111
MS.gene00382.t1 MTR_2g436380 60.000 60 24 0 239 298 1 60 5.67e-17 81.3
MS.gene00382.t1 MTR_4g119615 56.250 48 21 0 339 386 27 74 6.92e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00382.t1 AT5G07900 32.514 366 207 5 32 393 70 399 2.33e-59 199
MS.gene00382.t1 AT1G21150 30.137 365 213 4 32 391 57 384 3.09e-41 150
MS.gene00382.t1 AT1G21150 29.891 368 216 4 29 391 18 348 6.27e-41 149
MS.gene00382.t1 AT1G21150 30.137 365 213 4 32 391 121 448 1.02e-40 150
MS.gene00382.t1 AT1G61990 27.506 429 223 7 8 393 25 408 1.91e-36 138
MS.gene00382.t1 AT1G61990 27.506 429 223 7 8 393 25 408 1.91e-36 138
MS.gene00382.t1 AT1G61980 26.329 395 208 8 32 385 53 405 4.54e-33 129
MS.gene00382.t1 AT1G61980 26.329 395 208 8 32 385 53 405 4.54e-33 129
MS.gene00382.t1 AT1G61980 26.329 395 208 8 32 385 53 405 4.54e-33 129
MS.gene00382.t1 AT1G61970 26.098 387 207 9 32 379 53 399 8.95e-31 122
MS.gene00382.t1 AT1G61970 26.098 387 207 9 32 379 53 399 8.95e-31 122
MS.gene00382.t1 AT1G61970 26.098 387 207 9 32 379 53 399 8.95e-31 122
MS.gene00382.t1 AT1G61970 26.098 387 207 9 32 379 53 399 8.95e-31 122
MS.gene00382.t1 AT1G61970 26.098 387 207 9 32 379 53 399 8.95e-31 122
MS.gene00382.t1 AT1G61970 26.098 387 207 9 32 379 53 399 8.95e-31 122
MS.gene00382.t1 AT1G61970 26.098 387 207 9 32 379 53 399 8.95e-31 122
MS.gene00382.t1 AT1G62085 26.650 394 233 10 32 379 56 439 1.34e-29 120
MS.gene00382.t1 AT1G62085 26.650 394 233 10 32 379 56 439 1.34e-29 120
MS.gene00382.t1 AT5G64950 25.389 386 239 8 22 394 27 376 2.44e-29 118
MS.gene00382.t1 AT1G62120 26.027 365 196 6 29 356 54 381 8.23e-26 108
MS.gene00382.t1 AT1G62150 24.178 426 215 9 32 385 59 448 9.85e-26 108
MS.gene00382.t1 AT1G61960 29.078 282 156 4 32 309 53 294 6.58e-25 106
MS.gene00382.t1 AT1G62110 27.885 312 185 6 32 339 53 328 3.64e-23 101
MS.gene00382.t1 AT3G46950 21.333 450 237 9 6 381 26 432 6.11e-23 100
MS.gene00382.t1 AT1G62010 24.924 329 171 5 64 356 71 359 2.83e-20 92.8
MS.gene00382.t1 AT5G23930 24.235 392 247 9 32 384 56 436 1.59e-19 90.9
MS.gene00382.t1 AT1G56380 23.298 382 259 12 32 393 17 384 4.45e-14 73.9
MS.gene00382.t1 AT1G56380 23.298 382 259 12 32 393 28 395 4.54e-14 73.9

Find 70 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATCTGATGTCTGATTT+TGG 0.167543 2.2:-51188387 MS.gene00382:CDS
AAACTATAACCAACCATATT+TGG 0.202790 2.2:+51188027 None:intergenic
AAGCTAGTTTGTAAAATTAC+AGG 0.232888 2.2:+51188540 None:intergenic
CTGAGCGTCGTTGAGATATT+TGG 0.234004 2.2:+51188975 None:intergenic
TTGGAGGAAGTTAAAGGTTT+AGG 0.236931 2.2:-51188288 MS.gene00382:CDS
CATCCTCCAATCACTACTTT+TGG 0.261925 2.2:-51188261 MS.gene00382:CDS
TGGAGGAAGTTAAAGGTTTA+GGG 0.271068 2.2:-51188287 MS.gene00382:CDS
AAGTCATTGGAGGAAGTTAA+AGG 0.288064 2.2:-51188294 MS.gene00382:CDS
TTGGTTATAGTTTACATAAA+AGG 0.315414 2.2:-51188017 MS.gene00382:CDS
TCCTTTGAACAAAATATAGA+TGG 0.321886 2.2:+51188324 None:intergenic
TCAATTATGTTGGGATTCAT+TGG 0.321983 2.2:-51188064 MS.gene00382:CDS
AAAGGATTTGATTAAGTCAT+TGG 0.323129 2.2:-51188307 MS.gene00382:CDS
AGTTGATGTCTTTAAGAAAT+GGG 0.334222 2.2:-51188187 MS.gene00382:CDS
TAGAGGTAACCCTAAGTTCT+TGG 0.343348 2.2:-51188655 MS.gene00382:CDS
CTCAACTTCTTCAAAATTCA+CGG 0.343864 2.2:-51188816 MS.gene00382:CDS
AAGCTTAATTCCAAGAACTT+AGG 0.347303 2.2:+51188645 None:intergenic
AAGTTGATGTCTTTAAGAAA+TGG 0.356329 2.2:-51188188 MS.gene00382:CDS
ATTGAAACCAACATCAAATT+AGG 0.361121 2.2:+51188123 None:intergenic
GTCAGATTCAGAAGCACCTT+TGG 0.364937 2.2:+51188692 None:intergenic
ACTTGCTAAATGTCCAAATA+TGG 0.378071 2.2:-51188040 MS.gene00382:CDS
AAGAAGTTGAGAACTGAATC+AGG 0.382302 2.2:+51188828 None:intergenic
GCTTAATTCGACATTCGAAA+TGG 0.385119 2.2:-51188446 MS.gene00382:CDS
TACAGAAGATCTTACCCATT+TGG 0.386126 2.2:+51187783 None:intergenic
AGCTTAATTCCAAGAACTTA+GGG 0.393617 2.2:+51188646 None:intergenic
GATTGATATTAGCCACAATA+AGG 0.403119 2.2:+51188403 None:intergenic
GACATTGTCCACATGGTTAG+AGG 0.411647 2.2:-51188672 MS.gene00382:CDS
TCATACCTCATGGACAAATT+CGG 0.428026 2.2:-51188912 MS.gene00382:CDS
TTGGGTCAATCAATTATGTT+GGG 0.433615 2.2:-51188073 MS.gene00382:CDS
TTTGGGTCAATCAATTATGT+TGG 0.439467 2.2:-51188074 MS.gene00382:CDS
CTTAATTCGACATTCGAAAT+GGG 0.446962 2.2:-51188445 MS.gene00382:CDS
ATGGCATGTCATCCACCAAA+TGG 0.451519 2.2:-51187798 MS.gene00382:CDS
ATGAGATGAAGAAACACCTT+TGG 0.452819 2.2:+51188587 None:intergenic
GTGAAGGGGTGGTAGTTGTA+AGG 0.465187 2.2:+51188949 None:intergenic
ACATACGCAATATCATCAAA+AGG 0.472140 2.2:-51188779 MS.gene00382:CDS
GCAGTCCCAAAAGTAGTGAT+TGG 0.476571 2.2:+51188255 None:intergenic
AGAAGATCTTACCCATTTGG+TGG 0.500395 2.2:+51187786 None:intergenic
GTTGATGTCTTTAAGAAATG+GGG 0.513781 2.2:-51188186 MS.gene00382:CDS
TACATAAAAGGATCATTCCA+AGG 0.520767 2.2:-51188005 MS.gene00382:CDS
ATTAGCCACAATAAGGTGAT+GGG 0.522815 2.2:+51188410 None:intergenic
TGGCATGTCATCCACCAAAT+GGG 0.530912 2.2:-51187797 MS.gene00382:CDS
CATACGCAATATCATCAAAA+GGG 0.537507 2.2:-51188778 MS.gene00382:CDS
ACACAGCGAAAGGGTGTGAA+GGG 0.538458 2.2:+51188934 None:intergenic
AATTGCATAACTGAGGCCCT+TGG 0.542717 2.2:+51187988 None:intergenic
ATATCAGCCTAATTTGATGT+TGG 0.542801 2.2:-51188130 MS.gene00382:CDS
GCTAAATGTCCAAATATGGT+TGG 0.546995 2.2:-51188036 MS.gene00382:CDS
TTATCTATTAAAGCTATATG+AGG 0.548013 2.2:-51187854 MS.gene00382:CDS
TATTAGCCACAATAAGGTGA+TGG 0.550694 2.2:+51188409 None:intergenic
TTTCGCTGTGTCATACCTCA+TGG 0.551579 2.2:-51188922 MS.gene00382:CDS
TTATCCCCATCACCTTATTG+TGG 0.562119 2.2:-51188415 MS.gene00382:CDS
GGATTTGATTAAGTCATTGG+AGG 0.571043 2.2:-51188304 MS.gene00382:CDS
ACTGCTTTGATGGCCAAGAA+AGG 0.571792 2.2:-51188237 MS.gene00382:CDS
GACACAGCGAAAGGGTGTGA+AGG 0.581867 2.2:+51188933 None:intergenic
ATGAGGTATGACACAGCGAA+AGG 0.584854 2.2:+51188924 None:intergenic
GTCCCAAAAGTAGTGATTGG+AGG 0.586110 2.2:+51188258 None:intergenic
AGCGAAAGGGTGTGAAGGGG+TGG 0.587085 2.2:+51188938 None:intergenic
TGAGGTATGACACAGCGAAA+GGG 0.591839 2.2:+51188925 None:intergenic
ATGTCTTTAAGAAATGGGGT+TGG 0.604281 2.2:-51188182 MS.gene00382:CDS
ACATAAAAGGATCATTCCAA+GGG 0.612722 2.2:-51188004 MS.gene00382:CDS
TGAATCTGACATTGTCCACA+TGG 0.625387 2.2:-51188679 MS.gene00382:CDS
CAAAAGAAATTGCATAACTG+AGG 0.634260 2.2:+51187981 None:intergenic
AATGTTCTTTAAAACTAACA+AGG 0.637962 2.2:-51188481 MS.gene00382:CDS
ATATCATCAAAAGGGAACCA+TGG 0.652860 2.2:-51188770 MS.gene00382:CDS
CACAGCGAAAGGGTGTGAAG+GGG 0.666066 2.2:+51188935 None:intergenic
TTAGCCACAATAAGGTGATG+GGG 0.666360 2.2:+51188411 None:intergenic
GTATCGCAGGAAAGAAGCCA+TGG 0.666550 2.2:+51188753 None:intergenic
ATTGAAACTTGTATACACAA+AGG 0.672367 2.2:-51187827 MS.gene00382:CDS
AGAATCCGAATTTGTCCATG+AGG 0.674303 2.2:+51188907 None:intergenic
GATATTGCGTATGTCTGAGT+CGG 0.676717 2.2:+51188788 None:intergenic
TAGGGTTACCTCTAACCATG+TGG 0.696062 2.2:+51188664 None:intergenic
GTATACACAAAGGAGAACAA+TGG 0.696588 2.2:-51187817 MS.gene00382:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAGTAAAAATTGAAACTTT+GGG + chr2.2:51188079-51188098 None:intergenic 20.0%
!! ATTCTTAACAATTCAAAAAG+AGG + chr2.2:51188293-51188312 None:intergenic 20.0%
!! TTATCTATTAAAGCTATATG+AGG - chr2.2:51188937-51188956 MS.gene00382:CDS 20.0%
!! TTCTTAACAATTCAAAAAGA+GGG + chr2.2:51188292-51188311 None:intergenic 20.0%
!! TTGGTTATAGTTTACATAAA+AGG - chr2.2:51188774-51188793 MS.gene00382:CDS 20.0%
!!! AATGTTCTTTAAAACTAACA+AGG - chr2.2:51188310-51188329 MS.gene00382:CDS 20.0%
!!! TTTGAATATTTTCTATCCAA+AGG - chr2.2:51188188-51188207 MS.gene00382:CDS 20.0%
! AAACTATAACCAACCATATT+TGG + chr2.2:51188767-51188786 None:intergenic 25.0%
! AAAGGATTTGATTAAGTCAT+TGG - chr2.2:51188484-51188503 MS.gene00382:CDS 25.0%
! AAGGTATGAGTAAAAAACTT+TGG - chr2.2:51188573-51188592 MS.gene00382:CDS 25.0%
! AGGTATGAGTAAAAAACTTT+GGG - chr2.2:51188574-51188593 MS.gene00382:CDS 25.0%
! ATTGAAACCAACATCAAATT+AGG + chr2.2:51188671-51188690 None:intergenic 25.0%
! ATTGAAACTTGTATACACAA+AGG - chr2.2:51188964-51188983 MS.gene00382:CDS 25.0%
! GAGAGTAAAAATTGAAACTT+TGG + chr2.2:51188080-51188099 None:intergenic 25.0%
! TCCTTTGAACAAAATATAGA+TGG + chr2.2:51188470-51188489 None:intergenic 25.0%
!! AAGCTAGTTTGTAAAATTAC+AGG + chr2.2:51188254-51188273 None:intergenic 25.0%
!! ACCATCTATATTTTGTTCAA+AGG - chr2.2:51188466-51188485 MS.gene00382:CDS 25.0%
!! AGTTGATGTCTTTAAGAAAT+GGG - chr2.2:51188604-51188623 MS.gene00382:CDS 25.0%
!! ATGCAATTTCTTTTGATGAA+AGG - chr2.2:51188818-51188837 MS.gene00382:CDS 25.0%
!! ATTTTCTCAGAATAAGCAAA+TGG + chr2.2:51188875-51188894 None:intergenic 25.0%
!! TTTCAATTTTTACTCTCCAA+AGG - chr2.2:51188083-51188102 MS.gene00382:CDS 25.0%
!!! AAGTTGATGTCTTTAAGAAA+TGG - chr2.2:51188603-51188622 MS.gene00382:CDS 25.0%
!!! CAAGTTTGTTTTCAGATTTA+AGG - chr2.2:51188904-51188923 MS.gene00382:CDS 25.0%
!!! TAATTTGCTGATGAGTTTTT+GGG - chr2.2:51188700-51188719 MS.gene00382:CDS 25.0%
!!! TTAATTTGCTGATGAGTTTT+TGG - chr2.2:51188699-51188718 MS.gene00382:CDS 25.0%
!!! TTTTTTACTCATACCTTTCT+TGG + chr2.2:51188570-51188589 None:intergenic 25.0%
AAGCTTAATTCCAAGAACTT+AGG + chr2.2:51188149-51188168 None:intergenic 30.0%
ACATAAAAGGATCATTCCAA+GGG - chr2.2:51188787-51188806 MS.gene00382:CDS 30.0%
ACATACGCAATATCATCAAA+AGG - chr2.2:51188012-51188031 MS.gene00382:CDS 30.0%
AGCTTAATTCCAAGAACTTA+GGG + chr2.2:51188148-51188167 None:intergenic 30.0%
ATATCAGCCTAATTTGATGT+TGG - chr2.2:51188661-51188680 MS.gene00382:CDS 30.0%
CAAAAGAAATTGCATAACTG+AGG + chr2.2:51188813-51188832 None:intergenic 30.0%
CATACGCAATATCATCAAAA+GGG - chr2.2:51188013-51188032 MS.gene00382:CDS 30.0%
CTCAACTTCTTCAAAATTCA+CGG - chr2.2:51187975-51187994 MS.gene00382:CDS 30.0%
CTTAATTCGACATTCGAAAT+GGG - chr2.2:51188346-51188365 MS.gene00382:CDS 30.0%
GATTGATATTAGCCACAATA+AGG + chr2.2:51188391-51188410 None:intergenic 30.0%
TACATAAAAGGATCATTCCA+AGG - chr2.2:51188786-51188805 MS.gene00382:CDS 30.0%
TCAATTATGTTGGGATTCAT+TGG - chr2.2:51188727-51188746 MS.gene00382:CDS 30.0%
TTGGGTCAATCAATTATGTT+GGG - chr2.2:51188718-51188737 MS.gene00382:CDS 30.0%
TTTGGGTCAATCAATTATGT+TGG - chr2.2:51188717-51188736 MS.gene00382:CDS 30.0%
! ACTTGCTAAATGTCCAAATA+TGG - chr2.2:51188751-51188770 MS.gene00382:CDS 30.0%
! ATCAATCTGATGTCTGATTT+TGG - chr2.2:51188404-51188423 MS.gene00382:CDS 30.0%
! GTTGATGTCTTTAAGAAATG+GGG - chr2.2:51188605-51188624 MS.gene00382:CDS 30.0%
!! GTTTGTTTTCAGATTTAAGG+AGG - chr2.2:51188907-51188926 MS.gene00382:CDS 30.0%
!!! GGTTTTGAAATAAAGCTGTT+CGG + chr2.2:51187934-51187953 None:intergenic 30.0%
AAGAAGTTGAGAACTGAATC+AGG + chr2.2:51187966-51187985 None:intergenic 35.0%
AAGTCATTGGAGGAAGTTAA+AGG - chr2.2:51188497-51188516 MS.gene00382:CDS 35.0%
ATATCATCAAAAGGGAACCA+TGG - chr2.2:51188021-51188040 MS.gene00382:CDS 35.0%
ATGAGATGAAGAAACACCTT+TGG + chr2.2:51188207-51188226 None:intergenic 35.0%
ATTAGCCACAATAAGGTGAT+GGG + chr2.2:51188384-51188403 None:intergenic 35.0%
GCTAAATGTCCAAATATGGT+TGG - chr2.2:51188755-51188774 MS.gene00382:CDS 35.0%
GCTTAATTCGACATTCGAAA+TGG - chr2.2:51188345-51188364 MS.gene00382:CDS 35.0%
GGATTTGATTAAGTCATTGG+AGG - chr2.2:51188487-51188506 MS.gene00382:CDS 35.0%
GTATACACAAAGGAGAACAA+TGG - chr2.2:51188974-51188993 MS.gene00382:CDS 35.0%
TACAGAAGATCTTACCCATT+TGG + chr2.2:51189011-51189030 None:intergenic 35.0%
TATTAGCCACAATAAGGTGA+TGG + chr2.2:51188385-51188404 None:intergenic 35.0%
TCATACCTCATGGACAAATT+CGG - chr2.2:51187879-51187898 MS.gene00382:CDS 35.0%
TGGAGGAAGTTAAAGGTTTA+GGG - chr2.2:51188504-51188523 MS.gene00382:CDS 35.0%
TTGGAGGAAGTTAAAGGTTT+AGG - chr2.2:51188503-51188522 MS.gene00382:CDS 35.0%
! AACTGAATCAGGTTTTTGTG+AGG + chr2.2:51187955-51187974 None:intergenic 35.0%
! ATGTCTTTAAGAAATGGGGT+TGG - chr2.2:51188609-51188628 MS.gene00382:CDS 35.0%
!! ATCCTCCAATCACTACTTTT+GGG - chr2.2:51188531-51188550 MS.gene00382:CDS 35.0%
AGAAGATCTTACCCATTTGG+TGG + chr2.2:51189008-51189027 None:intergenic 40.0%
AGAATCCGAATTTGTCCATG+AGG + chr2.2:51187887-51187906 None:intergenic 40.0%
GATATTGCGTATGTCTGAGT+CGG + chr2.2:51188006-51188025 None:intergenic 40.0%
TAGAGGTAACCCTAAGTTCT+TGG - chr2.2:51188136-51188155 MS.gene00382:CDS 40.0%
TGAATCTGACATTGTCCACA+TGG - chr2.2:51188112-51188131 MS.gene00382:CDS 40.0%
TTAGCCACAATAAGGTGATG+GGG + chr2.2:51188383-51188402 None:intergenic 40.0%
TTATCCCCATCACCTTATTG+TGG - chr2.2:51188376-51188395 MS.gene00382:CDS 40.0%
! CATCCTCCAATCACTACTTT+TGG - chr2.2:51188530-51188549 MS.gene00382:CDS 40.0%
!! ACTTTGGGAGAATCGTTTTG+TGG + chr2.2:51188064-51188083 None:intergenic 40.0%
!! CTTTGGGAGAATCGTTTTGT+GGG + chr2.2:51188063-51188082 None:intergenic 40.0%
!!! TACTTTTGGGACTGCTTTGA+TGG - chr2.2:51188544-51188563 MS.gene00382:CDS 40.0%
AATTGCATAACTGAGGCCCT+TGG + chr2.2:51188806-51188825 None:intergenic 45.0%
ATGAGGTATGACACAGCGAA+AGG + chr2.2:51187870-51187889 None:intergenic 45.0%
ATGGCATGTCATCCACCAAA+TGG - chr2.2:51188993-51189012 MS.gene00382:CDS 45.0%
GACATTGTCCACATGGTTAG+AGG - chr2.2:51188119-51188138 MS.gene00382:CDS 45.0%
GCAGTCCCAAAAGTAGTGAT+TGG + chr2.2:51188539-51188558 None:intergenic 45.0%
GTCCCAAAAGTAGTGATTGG+AGG + chr2.2:51188536-51188555 None:intergenic 45.0%
TAGGGTTACCTCTAACCATG+TGG + chr2.2:51188130-51188149 None:intergenic 45.0%
TGAGGTATGACACAGCGAAA+GGG + chr2.2:51187869-51187888 None:intergenic 45.0%
TGGCATGTCATCCACCAAAT+GGG - chr2.2:51188994-51189013 MS.gene00382:CDS 45.0%
TTTCGCTGTGTCATACCTCA+TGG - chr2.2:51187869-51187888 MS.gene00382:CDS 45.0%
! ACTGCTTTGATGGCCAAGAA+AGG - chr2.2:51188554-51188573 MS.gene00382:CDS 45.0%
! CTGAGCGTCGTTGAGATATT+TGG + chr2.2:51187819-51187838 None:intergenic 45.0%
!! AATCGTTTTGTGGGTATCGC+AGG + chr2.2:51188054-51188073 None:intergenic 45.0%
!! GTCAGATTCAGAAGCACCTT+TGG + chr2.2:51188102-51188121 None:intergenic 45.0%
GTATCGCAGGAAAGAAGCCA+TGG + chr2.2:51188041-51188060 None:intergenic 50.0%
GTGAAGGGGTGGTAGTTGTA+AGG + chr2.2:51187845-51187864 None:intergenic 50.0%
! ACACAGCGAAAGGGTGTGAA+GGG + chr2.2:51187860-51187879 None:intergenic 50.0%
! CACAGCGAAAGGGTGTGAAG+GGG + chr2.2:51187859-51187878 None:intergenic 55.0%
! GACACAGCGAAAGGGTGTGA+AGG + chr2.2:51187861-51187880 None:intergenic 55.0%
! AGCGAAAGGGTGTGAAGGGG+TGG + chr2.2:51187856-51187875 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 51187777 51189036 51187777 ID=MS.gene00382
chr2.2 mRNA 51187777 51189036 51187777 ID=MS.gene00382.t1;Parent=MS.gene00382
chr2.2 exon 51187777 51189036 51187777 ID=MS.gene00382.t1.exon1;Parent=MS.gene00382.t1
chr2.2 CDS 51187777 51189036 51187777 ID=cds.MS.gene00382.t1;Parent=MS.gene00382.t1
Gene Sequence

>MS.gene00382

ATGTTGAAAGCATTTCTCTGTCGCAATGCTTTTCGCATACCAAATATCTCAACGACGCTCAGATTCCTTACAACTACCACCCCTTCACACCCTTTCGCTGTGTCATACCTCATGGACAAATTCGGATTCTCACATGAATTCGCACTCAAAGCTTCCGAACAGCTTTATTTCAAAACCTCACAAAAACCTGATTCAGTTCTCAACTTCTTCAAAATTCACGGTTTCACCGACTCAGACATACGCAATATCATCAAAAGGGAACCATGGCTTCTTTCCTGCGATACCCACAAAACGATTCTCCCAAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCTGAATCTGACATTGTCCACATGGTTAGAGGTAACCCTAAGTTCTTGGAATTAAGCTTGAAGAATCATCAAATTAAGTTTGAATATTTTCTATCCAAAGGTGTTTCTTCATCTCATATTGTTTCATTGTTAACTTCAAATCCTGTAATTTTACAAACTAGCTTCGAGAAACGAATAATCCCTCTTTTTGAATTGTTAAGAATGTTCTTTAAAACTAACAAGGATACAATTGTTTGCTTAATTCGACATTCGAAATGGGTTGCTAGTTATCCCCATCACCTTATTGTGGCTAATATCAATCTGATGTCTGATTTTGGAGTTTCTGATAATGTCATTGCTAGATTGCTTCAAATTAAACCATCTATATTTTGTTCAAAGGATTTGATTAAGTCATTGGAGGAAGTTAAAGGTTTAGGGTTTCATCCTCCAATCACTACTTTTGGGACTGCTTTGATGGCCAAGAAAGGTATGAGTAAAAAACTTTGGGATGAGAAAGTTGATGTCTTTAAGAAATGGGGTTGGTCTGATGAAGATGTTATTCGAGCATTTAGATATCAGCCTAATTTGATGTTGGTTTCAATTGATAAGATTAATTTGCTGATGAGTTTTTGGGTCAATCAATTATGTTGGGATTCATTGGCACTTGCTAAATGTCCAAATATGGTTGGTTATAGTTTACATAAAAGGATCATTCCAAGGGCCTCAGTTATGCAATTTCTTTTGATGAAAGGTTTGCGAAAAAAGAATGCAAGCTTAGTTGCACCATTTGCTTATTCTGAGAAAATGTTCTTGAGCAAGTTTGTTTTCAGATTTAAGGAGGAGTCTGATTATCTATTAAAGCTATATGAGGAAAAATTGAAACTTGTATACACAAAGGAGAACAATGGCATGTCATCCACCAAATGGGTAAGATCTTCTGTAATATAA
Protein sequence

>MS.gene00382.t1

MLKAFLCRNAFRIPNISTTLRFLTTTTPSHPFAVSYLMDKFGFSHEFALKASEQLYFKTSQKPDSVLNFFKIHGFTDSDIRNIIKREPWLLSCDTHKTILPKFQFLLSKGASESDIVHMVRGNPKFLELSLKNHQIKFEYFLSKGVSSSHIVSLLTSNPVILQTSFEKRIIPLFELLRMFFKTNKDTIVCLIRHSKWVASYPHHLIVANINLMSDFGVSDNVIARLLQIKPSIFCSKDLIKSLEEVKGLGFHPPITTFGTALMAKKGMSKKLWDEKVDVFKKWGWSDEDVIRAFRYQPNLMLVSIDKINLLMSFWVNQLCWDSLALAKCPNMVGYSLHKRIIPRASVMQFLLMKGLRKKNASLVAPFAYSEKMFLSKFVFRFKEESDYLLKLYEEKLKLVYTKENNGMSSTKWVRSSVI