AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00384

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00384.t1 MTR_2g438020 79.740 385 77 1 29 413 70 453 0.0 614
MS.gene00384.t1 MTR_2g437200 76.884 398 90 1 1 396 1 398 0.0 600
MS.gene00384.t1 MTR_2g437240 72.182 417 112 2 1 414 1 416 0.0 597
MS.gene00384.t1 MTR_2g437960 64.858 387 99 2 30 414 53 404 6.10e-175 494
MS.gene00384.t1 MTR_2g437960 65.026 386 98 2 30 413 53 403 2.81e-174 494
MS.gene00384.t1 MTR_2g437120 64.103 390 102 3 22 409 43 396 2.81e-167 476
MS.gene00384.t1 MTR_2g076320 62.406 399 110 3 23 416 40 403 1.15e-165 471
MS.gene00384.t1 MTR_2g437990 62.879 396 106 4 23 413 40 399 2.06e-165 471
MS.gene00384.t1 MTR_2g438010 61.209 397 114 3 23 414 60 421 3.01e-165 471
MS.gene00384.t1 MTR_2g437170 60.891 404 113 5 21 414 42 410 5.26e-163 464
MS.gene00384.t1 MTR_2g437150 60.902 399 113 4 21 411 42 405 6.34e-162 461
MS.gene00384.t1 MTR_2g437180 62.121 396 103 5 21 411 42 395 1.31e-160 458
MS.gene00384.t1 MTR_2g437160 60.152 394 115 4 21 408 50 407 6.07e-156 446
MS.gene00384.t1 MTR_2g437940 60.050 398 92 4 21 416 42 374 1.96e-153 439
MS.gene00384.t1 MTR_2g437100 60.309 388 107 4 21 396 43 395 7.27e-151 434
MS.gene00384.t1 MTR_2g437130 55.527 389 133 3 25 412 38 387 1.36e-138 402
MS.gene00384.t1 MTR_2g437260 47.677 409 168 6 1 401 1 371 1.58e-122 361
MS.gene00384.t1 MTR_2g437020 49.746 394 155 5 20 409 29 383 5.20e-122 359
MS.gene00384.t1 MTR_2g437060 48.454 388 160 3 19 404 44 393 1.18e-120 356
MS.gene00384.t1 MTR_2g437080 46.684 392 169 3 19 408 29 382 2.12e-120 355
MS.gene00384.t1 MTR_2g436440 46.650 403 175 3 9 409 25 389 1.10e-117 348
MS.gene00384.t1 MTR_2g437030 45.038 393 176 3 19 409 115 469 4.72e-112 337
MS.gene00384.t1 MTR_4g119550 45.407 381 169 3 25 404 46 388 1.44e-111 333
MS.gene00384.t1 MTR_2g436400 45.550 382 166 5 22 400 39 381 6.52e-110 328
MS.gene00384.t1 MTR_2g437040 45.297 404 174 5 8 408 23 382 2.56e-109 327
MS.gene00384.t1 MTR_2g436460 46.933 375 160 4 24 397 41 377 1.16e-100 305
MS.gene00384.t1 MTR_4g120380 43.784 370 170 2 24 393 38 369 7.43e-96 292
MS.gene00384.t1 MTR_4g120380 44.160 351 158 2 24 374 38 350 6.71e-91 281
MS.gene00384.t1 MTR_4g119580 43.089 369 171 3 26 393 39 369 2.45e-90 278
MS.gene00384.t1 MTR_2g437160 64.623 212 72 1 200 408 105 316 3.34e-88 270
MS.gene00384.t1 MTR_2g437160 31.707 205 84 4 21 172 50 251 6.19e-20 90.5
MS.gene00384.t1 MTR_2g019810 42.667 375 163 7 29 396 30 359 3.82e-83 259
MS.gene00384.t1 MTR_2g019840 39.370 381 187 7 24 401 37 376 1.12e-78 248
MS.gene00384.t1 MTR_2g437090 55.422 166 74 0 239 404 1 166 1.47e-59 192
MS.gene00384.t1 MTR_4g119570 39.600 250 115 2 143 392 14 227 1.43e-51 173
MS.gene00384.t1 MTR_3g450500 31.148 366 212 6 32 393 40 369 2.63e-51 177
MS.gene00384.t1 MTR_4g007490 30.055 366 215 5 32 393 39 367 1.05e-46 164
MS.gene00384.t1 MTR_3g085240 46.392 194 53 4 1 186 21 171 3.74e-37 136
MS.gene00384.t1 MTR_3g085240 55.556 90 23 1 298 387 176 248 2.52e-22 95.9
MS.gene00384.t1 MTR_2g436370 38.728 173 69 2 21 191 37 174 1.41e-30 117
MS.gene00384.t1 MTR_8g080990 28.228 333 198 5 61 390 74 368 1.45e-30 121
MS.gene00384.t1 MTR_8g081000 26.039 361 227 6 59 416 85 408 3.08e-29 118
MS.gene00384.t1 MTR_8g081000 26.706 337 208 5 59 393 85 384 7.14e-29 117
MS.gene00384.t1 MTR_8g081000 26.706 337 208 5 59 393 85 384 7.60e-29 116
MS.gene00384.t1 MTR_4g049400 46.875 128 57 3 21 137 37 164 2.00e-28 112
MS.gene00384.t1 MTR_2g436380 58.333 60 25 0 239 298 1 60 9.12e-17 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00384.t1 AT5G07900 31.250 384 216 5 23 393 51 399 2.12e-57 194
MS.gene00384.t1 AT1G21150 30.028 363 216 3 32 391 57 384 2.08e-45 162
MS.gene00384.t1 AT1G21150 30.028 363 216 3 32 391 121 448 3.35e-45 162
MS.gene00384.t1 AT1G21150 29.508 366 220 3 29 391 18 348 6.72e-45 159
MS.gene00384.t1 AT1G61990 25.874 429 230 7 8 393 25 408 2.53e-33 129
MS.gene00384.t1 AT1G61990 25.874 429 230 7 8 393 25 408 2.53e-33 129
MS.gene00384.t1 AT1G61970 26.718 393 197 10 32 379 53 399 4.51e-31 123
MS.gene00384.t1 AT1G61970 26.718 393 197 10 32 379 53 399 4.51e-31 123
MS.gene00384.t1 AT1G61970 26.718 393 197 10 32 379 53 399 4.51e-31 123
MS.gene00384.t1 AT1G61970 26.718 393 197 10 32 379 53 399 4.51e-31 123
MS.gene00384.t1 AT1G61970 26.718 393 197 10 32 379 53 399 4.51e-31 123
MS.gene00384.t1 AT1G61970 26.718 393 197 10 32 379 53 399 4.51e-31 123
MS.gene00384.t1 AT1G61970 26.718 393 197 10 32 379 53 399 4.51e-31 123
MS.gene00384.t1 AT1G62120 26.923 364 194 6 29 356 54 381 6.63e-31 123
MS.gene00384.t1 AT1G61980 27.390 387 202 8 32 379 53 399 1.88e-30 121
MS.gene00384.t1 AT1G61980 27.390 387 202 8 32 379 53 399 1.88e-30 121
MS.gene00384.t1 AT1G61980 27.390 387 202 8 32 379 53 399 1.88e-30 121
MS.gene00384.t1 AT5G64950 27.177 379 232 6 24 393 32 375 9.14e-29 116
MS.gene00384.t1 AT3G46950 23.709 426 201 11 32 380 53 431 4.14e-24 104
MS.gene00384.t1 AT1G61960 28.417 278 161 3 32 308 53 293 5.45e-24 103
MS.gene00384.t1 AT1G62150 26.573 286 157 4 32 308 59 300 1.31e-23 102
MS.gene00384.t1 AT1G62085 28.173 323 170 8 32 339 56 331 4.13e-23 101
MS.gene00384.t1 AT1G62085 28.173 323 170 8 32 339 56 331 4.13e-23 101
MS.gene00384.t1 AT1G62110 25.784 287 160 4 32 309 53 295 4.78e-21 95.1
MS.gene00384.t1 AT1G62010 24.857 350 186 6 64 376 71 380 6.11e-21 94.7
MS.gene00384.t1 AT5G23930 22.892 415 206 9 32 375 56 427 3.64e-17 83.6
MS.gene00384.t1 AT2G44020 20.436 367 267 8 9 357 82 441 2.50e-12 68.9

Find 76 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTCAAGGCCATCTATATT+TGG 0.148576 2.2:-51180275 MS.gene00384:CDS
GATCCTTCATTGACTACTTT+TGG 0.148781 2.2:-51180203 MS.gene00384:CDS
ATCAGTTTGATGACTGATTT+TGG 0.150667 2.2:-51180329 MS.gene00384:CDS
TTAATTTGGTGATGAGATTT+TGG 0.155421 2.2:-51180034 MS.gene00384:CDS
TTCAATTGATAAGATTAATT+TGG 0.211307 2.2:-51180048 MS.gene00384:CDS
TTAGTTATAGTTTACATAAA+AGG 0.215972 2.2:-51179959 MS.gene00384:CDS
AAACTATAACTAAACATATT+TGG 0.236813 2.2:+51179969 None:intergenic
TGGAGGAAGTAAAGAGTTTA+GGG 0.240494 2.2:-51180229 MS.gene00384:CDS
TTGGAGGAAGTAAAGAGTTT+AGG 0.267899 2.2:-51180230 MS.gene00384:CDS
TTTCTCGGTCGTAATGCTTT+TGG 0.287185 2.2:-51180944 MS.gene00384:CDS
AACTGATTTGATTAAATCAT+TGG 0.289242 2.2:-51180249 MS.gene00384:CDS
ATTGAAGTCAACATCAAATT+AGG 0.302705 2.2:+51180065 None:intergenic
ATGAGGTAGGATACGGTAAA+TGG 0.313971 2.2:+51180866 None:intergenic
AAACCGTTATTCGAGTATTT+AGG 0.319173 2.2:-51180094 MS.gene00384:CDS
AAGCTAATGTGTAAAATTGT+AGG 0.327956 2.2:+51180482 None:intergenic
TAGAGGTAACCCTCAGTTCT+TGG 0.332921 2.2:-51180597 MS.gene00384:CDS
ATTTGATGTCTTTAAGAAAT+GGG 0.334222 2.2:-51180129 MS.gene00384:CDS
GAAGCTTTGAGTGCGGATTC+AGG 0.344614 2.2:+51180824 None:intergenic
AATTTGATGTCTTTAAGAAA+TGG 0.359065 2.2:-51180130 MS.gene00384:CDS
CGATTCTCAGAATAAGTAAA+TGG 0.361831 2.2:+51179861 None:intergenic
GTCAGATTCAGAAGCACCTT+TGG 0.364937 2.2:+51180634 None:intergenic
AGATCAAAATCTTATACATT+TGG 0.374741 2.2:+51179725 None:intergenic
AAGAAGTTGAGAACTGAATC+AGG 0.382302 2.2:+51180770 None:intergenic
GACATTGTCCGCATGGTTAG+AGG 0.397781 2.2:-51180614 MS.gene00384:CDS
TAGTTATAGTTTACATAAAA+GGG 0.406121 2.2:-51179958 MS.gene00384:CDS
ATGAGATGAAGAAGCACCTT+TGG 0.415506 2.2:+51180529 None:intergenic
TCATTTAGGTTGGGATTCCT+TGG 0.419185 2.2:-51180006 MS.gene00384:CDS
TTGGGTCAATCATTTAGGTT+GGG 0.436055 2.2:-51180015 MS.gene00384:CDS
TCAGTTGAACCAAATATAGA+TGG 0.441181 2.2:+51180266 None:intergenic
TCAATGTTGAAAGCATTTCT+CGG 0.441510 2.2:-51180959 MS.gene00384:CDS
CATTTACTTATTCTGAGAAT+CGG 0.448897 2.2:-51179860 MS.gene00384:CDS
TCAAAATCTTATACATTTGG+TGG 0.453156 2.2:+51179728 None:intergenic
TTTCAGCTTTAAGGAGGAAT+CGG 0.464344 2.2:-51179820 MS.gene00384:CDS
ACATACGCAATATCATCAAA+AGG 0.472800 2.2:-51180721 MS.gene00384:CDS
CAAATACAACGGAGAACAAT+GGG 0.473276 2.2:-51179758 MS.gene00384:CDS
TTTGGGTCAATCATTTAGGT+TGG 0.474131 2.2:-51180016 MS.gene00384:CDS
AGCTAATGTGTAAAATTGTA+GGG 0.492224 2.2:+51180483 None:intergenic
TACTCGAATAACGGTTTCAT+CGG 0.500961 2.2:+51180100 None:intergenic
AGCTTAATTCCAAGAACTGA+GGG 0.508231 2.2:+51180588 None:intergenic
TTTGATGTCTTTAAGAAATG+GGG 0.510130 2.2:-51180128 MS.gene00384:CDS
AATTGCAAAACTGAGGCCCT+TGG 0.520839 2.2:+51179930 None:intergenic
GTGAAGAGGTGGTAGTGGTA+AGG 0.521046 2.2:+51180891 None:intergenic
TACATAAAAGGGTCATTCCA+AGG 0.527481 2.2:-51179947 MS.gene00384:CDS
TGAGGTAGGATACGGTAAAT+GGG 0.529833 2.2:+51180867 None:intergenic
CATACGCAATATCATCAAAA+GGG 0.549145 2.2:-51180720 MS.gene00384:CDS
TGGAAATTTAGCAAGTGCCA+AGG 0.550727 2.2:+51179989 None:intergenic
GCCCCAAAAGTAGTCAATGA+AGG 0.551784 2.2:+51180200 None:intergenic
CTCTTTGGAAGCTTTGAGTG+CGG 0.552416 2.2:+51180817 None:intergenic
GTAGGGTTTGAAGTTAACAA+TGG 0.555837 2.2:+51180500 None:intergenic
AACTGATATTAGCCACCGTA+AGG 0.557576 2.2:+51180345 None:intergenic
TTGCTAGATTGCTTCACTCA+AGG 0.565363 2.2:-51180289 MS.gene00384:CDS
TACGGTAAATGGGTGTGAAG+AGG 0.567945 2.2:+51180877 None:intergenic
TGATTTGATTAAATCATTGG+AGG 0.568194 2.2:-51180246 MS.gene00384:CDS
GCAAATACAACGGAGAACAA+TGG 0.572984 2.2:-51179759 MS.gene00384:CDS
TTCAAATTTGTCGATGAGGT+AGG 0.573096 2.2:+51180853 None:intergenic
TGAATCTGACATTGTCCGCA+TGG 0.573592 2.2:-51180621 MS.gene00384:CDS
GCTGCTTTGAAAGCCAAGAA+AGG 0.575078 2.2:-51180179 MS.gene00384:CDS
AGACCTAAATACTCGAATAA+CGG 0.575195 2.2:+51180091 None:intergenic
GGTAAATGGGTGTGAAGAGG+TGG 0.576624 2.2:+51180880 None:intergenic
TTTGTCGATGAGGTAGGATA+CGG 0.586173 2.2:+51180859 None:intergenic
TATTAGCCACCGTAAGGCGA+TGG 0.602409 2.2:+51180351 None:intergenic
ACATAAAAGGGTCATTCCAA+GGG 0.603881 2.2:-51179946 MS.gene00384:CDS
AGAATTCAAATTTGTCGATG+AGG 0.604058 2.2:+51180849 None:intergenic
AAGCTTAATTCCAAGAACTG+AGG 0.606825 2.2:+51180587 None:intergenic
TGGGTGTGAAGAGGTGGTAG+TGG 0.611966 2.2:+51180886 None:intergenic
ATGTCTTTAAGAAATGGGGT+TGG 0.618819 2.2:-51180124 MS.gene00384:CDS
ATATCATCAAAAGGGTACCA+TGG 0.628317 2.2:-51180712 MS.gene00384:CDS
GTATTGCAGGAAAGAATCCA+TGG 0.640699 2.2:+51180695 None:intergenic
CAAAAGAAATTGCAAAACTG+AGG 0.646915 2.2:+51179923 None:intergenic
TGAGTGAAGCAATCTAGCAA+TGG 0.650793 2.2:+51180292 None:intergenic
AATGAAACTTGCAAATACAA+CGG 0.655557 2.2:-51179769 MS.gene00384:CDS
TAATTGCCATCGCCTTACGG+TGG 0.656944 2.2:-51180357 MS.gene00384:CDS
AAGGTTCTTTAAAACTGACA+AGG 0.658226 2.2:-51180423 MS.gene00384:CDS
GATATTGCGTATGTCTGAGT+CGG 0.676717 2.2:+51180730 None:intergenic
ATGTCGAATTAAGCAAACAA+CGG 0.712898 2.2:+51180397 None:intergenic
GAGGGTTACCTCTAACCATG+CGG 0.732169 2.2:+51180606 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTATAACTAAACATATT+TGG + chr2.2:51180718-51180737 None:intergenic 15.0%
!! TAGTTATAGTTTACATAAAA+GGG - chr2.2:51180726-51180745 MS.gene00384:CDS 15.0%
!! TTAGTTATAGTTTACATAAA+AGG - chr2.2:51180725-51180744 MS.gene00384:CDS 15.0%
!! TTCAATTGATAAGATTAATT+TGG - chr2.2:51180636-51180655 MS.gene00384:CDS 15.0%
!!! TTTGATTATTTTTTATCCAA+AGG - chr2.2:51180139-51180158 MS.gene00384:CDS 15.0%
!! AGAGTAAAAATTGAAACTTT+GGG + chr2.2:51180030-51180049 None:intergenic 20.0%
!! AGGTATTAGTAAAAAACTTT+GGG - chr2.2:51180525-51180544 MS.gene00384:CDS 20.0%
!! TTCTTAACAATTCAAAAAGA+GGG + chr2.2:51180243-51180262 None:intergenic 20.0%
!!! AACTGATTTGATTAAATCAT+TGG - chr2.2:51180435-51180454 MS.gene00384:CDS 20.0%
!!! AAGGTATTAGTAAAAAACTT+TGG - chr2.2:51180524-51180543 MS.gene00384:CDS 20.0%
!!! AATTTGATGTCTTTAAGAAA+TGG - chr2.2:51180554-51180573 MS.gene00384:CDS 20.0%
!!! ATTTGATGTCTTTAAGAAAT+GGG - chr2.2:51180555-51180574 MS.gene00384:CDS 20.0%
!!! TTTTTTACTAATACCTTTCT+TGG + chr2.2:51180521-51180540 None:intergenic 20.0%
! AAGCTAATGTGTAAAATTGT+AGG + chr2.2:51180205-51180224 None:intergenic 25.0%
! AATGAAACTTGCAAATACAA+CGG - chr2.2:51180915-51180934 MS.gene00384:CDS 25.0%
! AGCTAATGTGTAAAATTGTA+GGG + chr2.2:51180204-51180223 None:intergenic 25.0%
! ATTGAAGTCAACATCAAATT+AGG + chr2.2:51180622-51180641 None:intergenic 25.0%
! CTTCTTAACAATTCAAAAAG+AGG + chr2.2:51180244-51180263 None:intergenic 25.0%
! GAGAGTAAAAATTGAAACTT+TGG + chr2.2:51180031-51180050 None:intergenic 25.0%
! TCAAAATCTTATACATTTGG+TGG + chr2.2:51180959-51180978 None:intergenic 25.0%
! TGATTTGATTAAATCATTGG+AGG - chr2.2:51180438-51180457 MS.gene00384:CDS 25.0%
!! CATTTACTTATTCTGAGAAT+CGG - chr2.2:51180824-51180843 MS.gene00384:CDS 25.0%
!! CTCTTTTTGAATTGTTAAGA+AGG - chr2.2:51180242-51180261 MS.gene00384:CDS 25.0%
!! TACAATTTTACACATTAGCT+TGG - chr2.2:51180204-51180223 MS.gene00384:CDS 25.0%
!! TTGCAATTTCTTTTGATGAA+AGG - chr2.2:51180769-51180788 MS.gene00384:CDS 25.0%
!! TTTCAATTTTTACTCTCCAA+AGG - chr2.2:51180034-51180053 MS.gene00384:CDS 25.0%
!! TTTGATGTCTTTAAGAAATG+GGG - chr2.2:51180556-51180575 MS.gene00384:CDS 25.0%
!!! TAATTTGGTGATGAGATTTT+GGG - chr2.2:51180651-51180670 MS.gene00384:CDS 25.0%
!!! TTAATTTGGTGATGAGATTT+TGG - chr2.2:51180650-51180669 MS.gene00384:CDS 25.0%
AAACCGTTATTCGAGTATTT+AGG - chr2.2:51180590-51180609 MS.gene00384:CDS 30.0%
ACATACGCAATATCATCAAA+AGG - chr2.2:51179963-51179982 MS.gene00384:CDS 30.0%
AGAATTCAAATTTGTCGATG+AGG + chr2.2:51179838-51179857 None:intergenic 30.0%
AGACCTAAATACTCGAATAA+CGG + chr2.2:51180596-51180615 None:intergenic 30.0%
ATGTCGAATTAAGCAAACAA+CGG + chr2.2:51180290-51180309 None:intergenic 30.0%
CAAAAGAAATTGCAAAACTG+AGG + chr2.2:51180764-51180783 None:intergenic 30.0%
CATACGCAATATCATCAAAA+GGG - chr2.2:51179964-51179983 MS.gene00384:CDS 30.0%
CGATTCTCAGAATAAGTAAA+TGG + chr2.2:51180826-51180845 None:intergenic 30.0%
TCAGTTGAACCAAATATAGA+TGG + chr2.2:51180421-51180440 None:intergenic 30.0%
!! AAGGTTCTTTAAAACTGACA+AGG - chr2.2:51180261-51180280 MS.gene00384:CDS 30.0%
!! AGATTTTGGGTCAATCATTT+AGG - chr2.2:51180664-51180683 MS.gene00384:CDS 30.0%
!! ATCAGTTTGATGACTGATTT+TGG - chr2.2:51180355-51180374 MS.gene00384:CDS 30.0%
!! ATCCTTCATTGACTACTTTT+GGG - chr2.2:51180482-51180501 MS.gene00384:CDS 30.0%
!!! GGTTTTGAAATAAAGCTCTT+TGG + chr2.2:51179885-51179904 None:intergenic 30.0%
AAGAAGTTGAGAACTGAATC+AGG + chr2.2:51179917-51179936 None:intergenic 35.0%
AAGCTTAATTCCAAGAACTG+AGG + chr2.2:51180100-51180119 None:intergenic 35.0%
ACATAAAAGGGTCATTCCAA+GGG - chr2.2:51180738-51180757 MS.gene00384:CDS 35.0%
AGCTTAATTCCAAGAACTGA+GGG + chr2.2:51180099-51180118 None:intergenic 35.0%
CAAATACAACGGAGAACAAT+GGG - chr2.2:51180926-51180945 MS.gene00384:CDS 35.0%
TACATAAAAGGGTCATTCCA+AGG - chr2.2:51180737-51180756 MS.gene00384:CDS 35.0%
TACTCGAATAACGGTTTCAT+CGG + chr2.2:51180587-51180606 None:intergenic 35.0%
TGGAGGAAGTAAAGAGTTTA+GGG - chr2.2:51180455-51180474 MS.gene00384:CDS 35.0%
TTCAAATTTGTCGATGAGGT+AGG + chr2.2:51179834-51179853 None:intergenic 35.0%
TTGGAGGAAGTAAAGAGTTT+AGG - chr2.2:51180454-51180473 MS.gene00384:CDS 35.0%
TTTGGGTCAATCATTTAGGT+TGG - chr2.2:51180668-51180687 MS.gene00384:CDS 35.0%
! AACTGAATCAGGTTTTTGTG+AGG + chr2.2:51179906-51179925 None:intergenic 35.0%
! ATGTCTTTAAGAAATGGGGT+TGG - chr2.2:51180560-51180579 MS.gene00384:CDS 35.0%
! CAAGTGTGTTTTCAGCTTTA+AGG - chr2.2:51180855-51180874 MS.gene00384:CDS 35.0%
! GTAGGGTTTGAAGTTAACAA+TGG + chr2.2:51180187-51180206 None:intergenic 35.0%
! TTGGGTCAATCATTTAGGTT+GGG - chr2.2:51180669-51180688 MS.gene00384:CDS 35.0%
!! ATATCATCAAAAGGGTACCA+TGG - chr2.2:51179972-51179991 MS.gene00384:CDS 35.0%
!! GATCCTTCATTGACTACTTT+TGG - chr2.2:51180481-51180500 MS.gene00384:CDS 35.0%
!! TCCTTCATTGACTACTTTTG+GGG - chr2.2:51180483-51180502 MS.gene00384:CDS 35.0%
!! TTTCAGCTTTAAGGAGGAAT+CGG - chr2.2:51180864-51180883 MS.gene00384:CDS 35.0%
!! TTTTAATTGCCATCGCCTTA+CGG - chr2.2:51180324-51180343 MS.gene00384:CDS 35.0%
AACTGATATTAGCCACCGTA+AGG + chr2.2:51180342-51180361 None:intergenic 40.0%
ATGAGGTAGGATACGGTAAA+TGG + chr2.2:51179821-51179840 None:intergenic 40.0%
CACTCAAGGCCATCTATATT+TGG - chr2.2:51180409-51180428 MS.gene00384:CDS 40.0%
GATATTGCGTATGTCTGAGT+CGG + chr2.2:51179957-51179976 None:intergenic 40.0%
GCAAATACAACGGAGAACAA+TGG - chr2.2:51180925-51180944 MS.gene00384:CDS 40.0%
GTATTGCAGGAAAGAATCCA+TGG + chr2.2:51179992-51180011 None:intergenic 40.0%
TGAGGTAGGATACGGTAAAT+GGG + chr2.2:51179820-51179839 None:intergenic 40.0%
TGAGTGAAGCAATCTAGCAA+TGG + chr2.2:51180395-51180414 None:intergenic 40.0%
TGGAAATTTAGCAAGTGCCA+AGG + chr2.2:51180698-51180717 None:intergenic 40.0%
TTGCTAGATTGCTTCACTCA+AGG - chr2.2:51180395-51180414 MS.gene00384:CDS 40.0%
TTTGTCGATGAGGTAGGATA+CGG + chr2.2:51179828-51179847 None:intergenic 40.0%
! TTTCTCGGTCGTAATGCTTT+TGG - chr2.2:51179740-51179759 MS.gene00384:CDS 40.0%
!! AATCGTTTTGTGGGTATTGC+AGG + chr2.2:51180005-51180024 None:intergenic 40.0%
!! ACTTTGGGAGAATCGTTTTG+TGG + chr2.2:51180015-51180034 None:intergenic 40.0%
!! ATGAGATGAAGAAGCACCTT+TGG + chr2.2:51180158-51180177 None:intergenic 40.0%
!! CTTTGGGAGAATCGTTTTGT+GGG + chr2.2:51180014-51180033 None:intergenic 40.0%
!! TCATTTAGGTTGGGATTCCT+TGG - chr2.2:51180678-51180697 MS.gene00384:CDS 40.0%
!!! GTGTGTTTTCAGCTTTAAGG+AGG - chr2.2:51180858-51180877 MS.gene00384:CDS 40.0%
AATTGCAAAACTGAGGCCCT+TGG + chr2.2:51180757-51180776 None:intergenic 45.0%
GCCCCAAAAGTAGTCAATGA+AGG + chr2.2:51180487-51180506 None:intergenic 45.0%
TACGGTAAATGGGTGTGAAG+AGG + chr2.2:51179810-51179829 None:intergenic 45.0%
TAGAGGTAACCCTCAGTTCT+TGG - chr2.2:51180087-51180106 MS.gene00384:CDS 45.0%
TGAATCTGACATTGTCCGCA+TGG - chr2.2:51180063-51180082 MS.gene00384:CDS 45.0%
!! CTCTTTGGAAGCTTTGAGTG+CGG + chr2.2:51179870-51179889 None:intergenic 45.0%
!! GCTGCTTTGAAAGCCAAGAA+AGG - chr2.2:51180505-51180524 MS.gene00384:CDS 45.0%
!! GTCAGATTCAGAAGCACCTT+TGG + chr2.2:51180053-51180072 None:intergenic 45.0%
GACATTGTCCGCATGGTTAG+AGG - chr2.2:51180070-51180089 MS.gene00384:CDS 50.0%
GAGGGTTACCTCTAACCATG+CGG + chr2.2:51180081-51180100 None:intergenic 50.0%
GGTAAATGGGTGTGAAGAGG+TGG + chr2.2:51179807-51179826 None:intergenic 50.0%
TAATTGCCATCGCCTTACGG+TGG - chr2.2:51180327-51180346 MS.gene00384:CDS 50.0%
TATTAGCCACCGTAAGGCGA+TGG + chr2.2:51180336-51180355 None:intergenic 50.0%
!! GAAGCTTTGAGTGCGGATTC+AGG + chr2.2:51179863-51179882 None:intergenic 50.0%
!! GTGAAGAGGTGGTAGTGGTA+AGG + chr2.2:51179796-51179815 None:intergenic 50.0%
TGGGTGTGAAGAGGTGGTAG+TGG + chr2.2:51179801-51179820 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 51179728 51180978 51179728 ID=MS.gene00384
chr2.2 mRNA 51179728 51180978 51179728 ID=MS.gene00384.t1;Parent=MS.gene00384
chr2.2 exon 51179728 51180978 51179728 ID=MS.gene00384.t1.exon1;Parent=MS.gene00384.t1
chr2.2 CDS 51179728 51180978 51179728 ID=cds.MS.gene00384.t1;Parent=MS.gene00384.t1
Gene Sequence

>MS.gene00384

ATGTTGAAAGCATTTCTCGGTCGTAATGCTTTTGGCATATCAAATTACTCACAAACACTCAGATTCCTTACCACTACCACCTCTTCACACCCATTTACCGTATCCTACCTCATCGACAAATTTGAATTCTCACCTGAATCCGCACTCAAAGCTTCCAAAGAGCTTTATTTCAAAACCTCACAAAAACCTGATTCAGTTCTCAACTTCTTCAAAAATCACAGTTTCACCGACTCAGACATACGCAATATCATCAAAAGGGTACCATGGATTCTTTCCTGCAATACCCACAAAACGATTCTCCCAAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCTGAATCTGACATTGTCCGCATGGTTAGAGGTAACCCTCAGTTCTTGGAATTAAGCTTGAAGAATCATCAAATTAAGTTTGATTATTTTTTATCCAAAGGTGCTTCTTCATCTCATATTGTTCCATTGTTAACTTCAAACCCTACAATTTTACACATTAGCTTGGAGAAACGAATAATCCCTCTTTTTGAATTGTTAAGAAGGTTCTTTAAAACTGACAAGGATACCGTTGTTTGCTTAATTCGACATTCAACTACATTTACTTTTAATTGCCATCGCCTTACGGTGGCTAATATCAGTTTGATGACTGATTTTGGAGTTTCTGATTCTACCATTGCTAGATTGCTTCACTCAAGGCCATCTATATTTGGTTCAACTGATTTGATTAAATCATTGGAGGAAGTAAAGAGTTTAGGGTTTGATCCTTCATTGACTACTTTTGGGGCTGCTTTGAAAGCCAAGAAAGGTATTAGTAAAAAACTTTGGGATGAGAAATTTGATGTCTTTAAGAAATGGGGTTGGTCCGATGAAACCGTTATTCGAGTATTTAGGTCTCAGCCTAATTTGATGTTGACTTCAATTGATAAGATTAATTTGGTGATGAGATTTTGGGTCAATCATTTAGGTTGGGATTCCTTGGCACTTGCTAAATTTCCAAATATGTTTAGTTATAGTTTACATAAAAGGGTCATTCCAAGGGCCTCAGTTTTGCAATTTCTTTTGATGAAAGGTTTGCGAAAAAAGAATGCAAGCTTAGTCACACCATTTACTTATTCTGAGAATCGGTTCTTGAACAAGTGTGTTTTCAGCTTTAAGGAGGAATCGGATTATCTGTTGAAGCTATATGACGAAAAAATGAAACTTGCAAATACAACGGAGAACAATGGGATGTCATCCACCAAATGTATAAGATTTTGA
Protein sequence

>MS.gene00384.t1

MLKAFLGRNAFGISNYSQTLRFLTTTTSSHPFTVSYLIDKFEFSPESALKASKELYFKTSQKPDSVLNFFKNHSFTDSDIRNIIKRVPWILSCNTHKTILPKFQFLLSKGASESDIVRMVRGNPQFLELSLKNHQIKFDYFLSKGASSSHIVPLLTSNPTILHISLEKRIIPLFELLRRFFKTDKDTVVCLIRHSTTFTFNCHRLTVANISLMTDFGVSDSTIARLLHSRPSIFGSTDLIKSLEEVKSLGFDPSLTTFGAALKAKKGISKKLWDEKFDVFKKWGWSDETVIRVFRSQPNLMLTSIDKINLVMRFWVNHLGWDSLALAKFPNMFSYSLHKRVIPRASVLQFLLMKGLRKKNASLVTPFTYSENRFLNKCVFSFKEESDYLLKLYDEKMKLANTTENNGMSSTKCIRF