AlfalfaGEDB | MS.gene003845

M. sativa cultivar XinJiangDaYe / MS.gene003845

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003845.t1	XP_003606842.1	96	429	14	1	1	426	1	429	2.00E-232	814.7

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003845.t1	Q8L3W1	50.4	393	139	7	1	391	1	339	9.0e-96	352.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003845.t1	G7JEY1	96.0	429	14	1	1	426	1	429	1.5e-232	814.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene003845.t1	TF	B3

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003845.t1	MTR_4g068320	96.037	429	14	1	1	426	1	429	0.0	848
MS.gene003845.t1	MTR_1g034240	61.556	437	150	7	2	426	3	433	0.0	543
MS.gene003845.t1	MTR_1g034210	47.475	396	173	7	4	397	5	367	5.95e-115	341
MS.gene003845.t1	MTR_1g034210	45.042	353	159	7	4	354	5	324	5.12e-91	278
MS.gene003845.t1	MTR_3g005480	35.971	139	84	1	3	141	18	151	3.14e-24	101
MS.gene003845.t1	MTR_3g005480	37.241	145	71	6	257	391	129	263	6.59e-16	77.8
MS.gene003845.t1	MTR_5g070440	42.157	102	59	0	3	104	18	119	1.84e-23	99.8
MS.gene003845.t1	MTR_5g070440	36.170	141	69	4	263	388	134	268	2.02e-14	73.6
MS.gene003845.t1	MTR_3g005490	40.000	110	66	0	3	112	18	127	1.22e-22	97.1
MS.gene003845.t1	MTR_3g005490	35.821	134	70	5	267	391	136	262	1.20e-13	71.2

Showing 1 to 10 of 71 entries

Previous1 2 3 4 5…8Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003845.t1	AT3G18990	50.382	393	139	7	1	391	1	339	7.70e-126	368
MS.gene003845.t1	AT3G18990	50.125	399	140	8	1	394	1	345	1.42e-124	366
MS.gene003845.t1	AT1G49480	66.061	165	53	2	229	391	61	224	2.88e-72	227
MS.gene003845.t1	AT1G49480	66.061	165	53	2	229	391	61	224	2.88e-72	227
MS.gene003845.t1	AT1G49480	66.061	165	53	2	229	391	61	224	2.88e-72	227
MS.gene003845.t1	AT4G01580	39.806	103	62	0	2	104	26	128	3.55e-21	91.3
MS.gene003845.t1	AT3G18960	37.864	103	64	0	2	104	26	128	2.03e-20	89.0
MS.gene003845.t1	AT3G18960	37.864	103	64	0	2	104	26	128	2.31e-20	89.4
MS.gene003845.t1	AT1G49475	33.803	142	87	3	2	137	27	167	5.29e-18	82.0
MS.gene003845.t1	AT3G18960	34.524	84	55	0	21	104	8	91	1.35e-13	68.9

Showing 1 to 10 of 11 entries

Previous1 2Next

Find 97 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTAGACAACAAATTT+TGG	0.211575	4.2:-38233150	MS.gene003845:CDS
AAACTGGAGACCTATATCTC+TGG	0.534467	4.2:+38232697	None:intergenic
AAACTTAATAGCATAAACTG+GGG	0.737966	4.2:-38232773	MS.gene003845:CDS
AAATCTCTGATGGGAGACAG+TGG	0.637373	4.2:-38232140	MS.gene003845:CDS
AACAGATTCTGCAGTGCTGG+AGG	0.607091	4.2:+38232806	None:intergenic
AACAGCTGAAGAAAGAGAGA+AGG	0.598211	4.2:-38232397	MS.gene003845:CDS
AACCAGTTGACCAGAGATAT+AGG	0.450024	4.2:-38232707	MS.gene003845:CDS
AACCATCTAATCCTTTCTGT+CGG	0.454042	4.2:-38232350	MS.gene003845:CDS
AACGAAGGAAGTAGTGCTGC+AGG	0.550293	4.2:-38232004	MS.gene003845:CDS
AAGAACTTGAATGGCGTTTC+AGG	0.211639	4.2:-38232177	MS.gene003845:CDS

Showing 1 to 10 of 97 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATATATGTGTGTTGCATGT+TGG	+	chr4.2:38232294-38232313	None:intergenic	30.0%
AGAACAAGCTTATGAAATGA+AGG	+	chr4.2:38231885-38231904	None:intergenic	30.0%
AGCATATGTTAGTAAATTGC+TGG	+	chr4.2:38232771-38232790	None:intergenic	30.0%
ATCAAACTTCAAATCTCTGA+TGG	-	chr4.2:38234211-38234230	MS.gene003845:intron	30.0%
TACTGTATTTCGTATTACAG+AGG	-	chr4.2:38234381-38234400	MS.gene003845:intron	30.0%
TCAAACTTCAAATCTCTGAT+GGG	-	chr4.2:38234212-38234231	MS.gene003845:intron	30.0%
TGAAGATTCTGTTGAAATCA+TGG	-	chr4.2:38233440-38233459	MS.gene003845:intron	30.0%
TGATAGTTAATCTCAGATGT+AGG	+	chr4.2:38233348-38233367	None:intergenic	30.0%
AACCATCTAATCCTTTCTGT+CGG	-	chr4.2:38234011-38234030	MS.gene003845:intron	35.0%
ACGACCCTCCTATTTATATA+GGG	-	chr4.2:38234042-38234061	MS.gene003845:intron	35.0%

Showing 1 to 10 of 207 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	38231873	38234510	38231873	ID=MS.gene003845
chr4.2	mRNA	38231873	38234510	38231873	ID=MS.gene003845.t1;Parent=MS.gene003845
chr4.2	exon	38234451	38234510	38234451	ID=MS.gene003845.t1.exon1;Parent=MS.gene003845.t1
chr4.2	CDS	38234451	38234510	38234451	ID=cds.MS.gene003845.t1;Parent=MS.gene003845.t1
chr4.2	exon	38232600	38233269	38232600	ID=MS.gene003845.t1.exon2;Parent=MS.gene003845.t1
chr4.2	CDS	38232600	38233269	38232600	ID=cds.MS.gene003845.t1;Parent=MS.gene003845.t1
chr4.2	exon	38232308	38232507	38232308	ID=MS.gene003845.t1.exon3;Parent=MS.gene003845.t1
chr4.2	CDS	38232308	38232507	38232308	ID=cds.MS.gene003845.t1;Parent=MS.gene003845.t1
chr4.2	exon	38231873	38232223	38231873	ID=MS.gene003845.t1.exon4;Parent=MS.gene003845.t1
chr4.2	CDS	38231873	38232223	38231873	ID=cds.MS.gene003845.t1;Parent=MS.gene003845.t1

Gene Sequence

>MS.gene003845

ATGCCTTCTCCTTCATTTCATAAGCTTGTTCTACCCTCCACTCTTCAAGCTAAGCAACTGGTATACCTAAAAATTCAATCTTTTGTGTATTATTTTTTGGTTTTTTGACTCTATTTTCTTAGATGAATTTTTGCATGGTTTATTTATTTATTTATTTATTTATTTTTGTAGTGGGTTTATGAGAATTTTGATAGAGTGAAGAAAGGGTTTGATAATTTTTCTGGGTTTTTACTTTTTATTTTCACCAATCATCCACAACCTCAAACCTTGTCATCCCTTTCATCAAGTTTAAATTTTTAGATTAGATGGGCGTGGAAAAAAAAGAGTCATAAATATTTTTGGGTCAAGGTCTCAAGATTAGTCATGGACTTTTAAAGTCAAATCATAAAGTGGGGTTGGCTAATTTTATGCCCTATTTCCAACATGCAACACACATATATTTAAGTTTTCTCAAATTTATTAATTGAAAATTCTCCACACAAAAAAAAAAGGATTTTTTTCAACTTGAAATTAGAGTTTTTTGGATGACTGATGGGTTGTTTTACTGGTGGAATTTTTGAGGAAATTTATGCTGAGTAAATATAATTAATAGTGTACTTTGGTTTAGAGATCTACTCTGTATGAAGCATGTGCTAGGTTGTAACATGAAGGTAGCTCGGTTGGTGAGTTAAGGGACATTGAAATAGTTTAAATCAGGAGGTCCCGAGTTCGATTTTTTTTTTTTTTTAAATGGCTAATTTTATTCTCGACGAGTTTATGCAAGACGCACAAAAAACTCGTGGCAAGGAAAGGGAAACAATACAACAAGGTGCCGCTTATATAAGTTACACCTCCGCCCGATAAAAACAAACCCACGAAAACCCAAATAAGGCATCGATGGGTAAAACTAATATAACCAGCAATTTACTAACATATGCTTATAAAAAAAATGCATTAGCCGAGTTACAGGGAGAAACAATTCCCATGCATTGGAGGAGGAACCTGAACTAAACCTATATCTTTTTCGAATCTATCTTTGCAATTAGAATTTTAGCTTTGTTTGTCAGATTAGCTTGAGTGTTTGTGTGTTACGGTGCAATTTATGAAGTTCCGTGATTCTGAAATTGGCTGCCGATCTTGCCAAACCGATTCGACGAACTTAGTACAATAGAATATTGCACTTTTTGAAATGAAATGGTGTTTTTTATACTATCATGGCAATTTACAAATATTTGGAACCTAATATGATTTGTGAATTGCAGAGGCTTCCAGATGATTTTATGAGGAAATATGGTGGTGATATTTCTCCAATGGTTACTCTCAAAGTTCCTGATGGCAGTGCGTGGCGTGTAGGAATGAAAAAGGTAGACAACAAATTTTGGTTCCTTGATGGCTGGAATGAATTTGTTCAAAAATATTCCATTAGTACTGGATACTTGTTGGTATTCAAATATGAAGGAAAGTCGTATTTCACTGTTAATATTTTTAGTTTGCCTACATCTGAGATTAACTATCAATCACCTGCGCAAAGAAGTAATGAAGCGTCTCTCTTTGGAAAACGTCTTACTATTTTCGAAGAAATGGAAGATGAAGATTCTGTTGAAATCATGGACTCGTCGCCTACGAACCTTACTCCTAGCCTATTGCAAAACAAAGCAGTTACCGGCTCAGCTGATAAACTTACTCCTTGCAAGTCTCGTCCGCCTCCAGCACTGCAGAATCTGTTTAATGGATCTAAACTTAATAGCATAAACTGGGGTGAAGGTGGGAATACTCCTTCCAGAAATGCCAACTCGGTAGACAACCAGTTGACCAGAGATATAGGTCTCCAGTTTAATGTAGTTGAGTTTAAAAAGTTTAATGAAGAGTTGAAGTTGCGCGCGGCTACTGATGAAAAGGTTAAGAAAACTGCTGTAAAGAAGAGGAAATCAGGTCTTAGTTATTGTTTATAACTCGGTTTTCTTTATCTGATCTCGTTATCTGAAATGAAATTTATAATCAAAATGCTATTTTTGAAAGTGCAGATGTCCAGGAACCTCCTTCTGAACATGAAGATGAGGTAGAAATGCGCAATAGGTTTTATGAAAGTGCATCCGCAAGGAAAAGAACTGCAACAGCTGAAGAAAGAGAGAAGGCCATCAATGCAGCAAAATCATTTGAACCATCTAATCCTTTCTGTCGGGTTGTCCTACGACCCTCCTATTTATATAGGGGGTGCATAATGGTGAATCATTGAATCCAACACAACTTTTTTTTTATTCTCTTATAACATTTTGATCTTGCATGCTAAATTCTTTCCGTTTTCCAGTATCTACCATCTTGCTTTGCAGAGAAGAACTTGAATGGCGTTTCAGGAATTATCAAACTTCAAATCTCTGATGGGAGACAGTGGCCAGTTCGCTGCCTTTATAGAGGTGGTAGAGCTAAGTTAAGCCAGGGGTGGTATGAGTTTTCGCTGGAGAACAATTTAGGGGAAGGCGATGTGTGTGTGTTTGAGCTGGTTGCAACGAAGGAAGTAGTGCTGCAGGTTACTGTATTTCGTATTACAGAGGATGAAGGACCGTTGAGCCCACAGCCGTTGCAGCAGAACCAACATGTGAAACTGGTAAACGTTCCGTTTCAGCATCACCTCGCTTCAACTAAACTGATTAGAAATTAA

Protein sequence

>MS.gene003845.t1

MPSPSFHKLVLPSTLQAKQLRLPDDFMRKYGGDISPMVTLKVPDGSAWRVGMKKVDNKFWFLDGWNEFVQKYSISTGYLLVFKYEGKSYFTVNIFSLPTSEINYQSPAQRSNEASLFGKRLTIFEEMEDEDSVEIMDSSPTNLTPSLLQNKAVTGSADKLTPCKSRPPPALQNLFNGSKLNSINWGEGGNTPSRNANSVDNQLTRDIGLQFNVVEFKKFNEELKLRAATDEKVKKTAVKKRKSDVQEPPSEHEDEVEMRNRFYESASARKRTATAEEREKAINAAKSFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGIIKLQISDGRQWPVRCLYRGGRAKLSQGWYEFSLENNLGEGDVCVFELVATKEVVLQVTVFRITEDEGPLSPQPLQQNQHVKLVNVPFQHHLASTKLIRN