Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003876.t1 | XP_013456310.1 | 99.2 | 240 | 2 | 0 | 1 | 240 | 1 | 240 | 1.40E-134 | 488.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003876.t1 | Q96288 | 63.3 | 248 | 83 | 5 | 1 | 240 | 1 | 248 | 1.2e-81 | 304.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003876.t1 | A0A072ULU3 | 99.2 | 240 | 2 | 0 | 1 | 240 | 1 | 240 | 1.0e-134 | 488.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene003876.t1 | TF | DBB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003876.t1 | MTR_4g067320 | 99.167 | 240 | 2 | 0 | 1 | 240 | 1 | 240 | 9.11e-179 | 490 |
| MS.gene003876.t1 | MTR_4g067320 | 98.750 | 240 | 2 | 1 | 1 | 240 | 1 | 239 | 5.88e-176 | 483 |
| MS.gene003876.t1 | MTR_2g099010 | 69.262 | 244 | 70 | 3 | 1 | 240 | 1 | 243 | 8.49e-117 | 333 |
| MS.gene003876.t1 | MTR_2g099010 | 68.852 | 244 | 70 | 4 | 1 | 240 | 1 | 242 | 3.03e-114 | 327 |
| MS.gene003876.t1 | MTR_2g099010 | 61.702 | 188 | 67 | 3 | 57 | 240 | 31 | 217 | 1.71e-72 | 220 |
| MS.gene003876.t1 | MTR_2g073370 | 60.550 | 109 | 43 | 0 | 1 | 109 | 1 | 109 | 1.02e-42 | 146 |
| MS.gene003876.t1 | MTR_1g023260 | 34.799 | 273 | 133 | 8 | 1 | 240 | 1 | 261 | 1.04e-37 | 133 |
| MS.gene003876.t1 | MTR_3g117320 | 54.717 | 106 | 47 | 1 | 1 | 105 | 1 | 106 | 1.80e-35 | 126 |
| MS.gene003876.t1 | MTR_1g023260 | 57.407 | 108 | 39 | 2 | 1 | 104 | 1 | 105 | 1.89e-35 | 125 |
| MS.gene003876.t1 | MTR_4g071200 | 49.558 | 113 | 56 | 1 | 1 | 112 | 1 | 113 | 2.20e-35 | 125 |
| MS.gene003876.t1 | MTR_3g113070 | 52.830 | 106 | 48 | 1 | 1 | 104 | 1 | 106 | 1.44e-32 | 118 |
| MS.gene003876.t1 | MTR_5g021580 | 42.537 | 134 | 71 | 4 | 1 | 131 | 1 | 131 | 5.50e-25 | 97.8 |
| MS.gene003876.t1 | MTR_5g021580 | 42.537 | 134 | 71 | 4 | 1 | 131 | 1 | 131 | 5.95e-25 | 97.8 |
| MS.gene003876.t1 | MTR_7g018170 | 43.478 | 92 | 43 | 1 | 5 | 96 | 26 | 108 | 9.14e-19 | 84.7 |
| MS.gene003876.t1 | MTR_3g105710 | 43.750 | 96 | 45 | 1 | 5 | 100 | 6 | 92 | 1.87e-18 | 82.4 |
| MS.gene003876.t1 | MTR_1g013450 | 42.391 | 92 | 44 | 1 | 5 | 96 | 6 | 88 | 2.48e-18 | 82.4 |
| MS.gene003876.t1 | MTR_4g128930 | 39.130 | 92 | 47 | 1 | 5 | 96 | 22 | 104 | 1.20e-16 | 78.6 |
| MS.gene003876.t1 | MTR_7g108150 | 41.837 | 98 | 47 | 2 | 5 | 102 | 20 | 107 | 9.25e-16 | 75.9 |
| MS.gene003876.t1 | MTR_5g069480 | 35.417 | 96 | 53 | 1 | 1 | 96 | 1 | 87 | 4.67e-14 | 71.2 |
| MS.gene003876.t1 | MTR_5g069480 | 35.417 | 96 | 53 | 1 | 1 | 96 | 1 | 87 | 5.30e-14 | 70.1 |
| MS.gene003876.t1 | MTR_3g082630 | 38.542 | 96 | 49 | 2 | 1 | 96 | 1 | 86 | 6.52e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003876.t1 | AT1G06040 | 62.500 | 248 | 85 | 4 | 1 | 240 | 1 | 248 | 8.69e-105 | 303 |
| MS.gene003876.t1 | AT2G31380 | 59.836 | 244 | 88 | 7 | 1 | 240 | 1 | 238 | 3.08e-92 | 271 |
| MS.gene003876.t1 | AT1G06040 | 66.071 | 168 | 51 | 3 | 1 | 162 | 1 | 168 | 2.66e-70 | 213 |
| MS.gene003876.t1 | AT1G78600 | 56.800 | 125 | 52 | 1 | 1 | 125 | 1 | 123 | 5.56e-42 | 145 |
| MS.gene003876.t1 | AT1G78600 | 56.800 | 125 | 52 | 1 | 1 | 125 | 1 | 123 | 1.19e-41 | 144 |
| MS.gene003876.t1 | AT4G10240 | 47.619 | 147 | 64 | 4 | 1 | 141 | 1 | 140 | 2.37e-36 | 126 |
| MS.gene003876.t1 | AT1G75540 | 56.522 | 115 | 47 | 2 | 1 | 112 | 1 | 115 | 5.46e-36 | 130 |
| MS.gene003876.t1 | AT4G39070 | 45.890 | 146 | 76 | 2 | 1 | 145 | 1 | 144 | 8.20e-34 | 122 |
| MS.gene003876.t1 | AT2G21320 | 50.000 | 104 | 49 | 2 | 1 | 104 | 1 | 101 | 4.25e-25 | 97.8 |
| MS.gene003876.t1 | AT4G38960 | 42.424 | 132 | 68 | 3 | 1 | 127 | 1 | 129 | 6.36e-25 | 97.4 |
| MS.gene003876.t1 | AT4G38960 | 42.424 | 132 | 68 | 3 | 1 | 127 | 1 | 129 | 6.36e-25 | 97.4 |
| MS.gene003876.t1 | AT5G15850 | 33.143 | 175 | 90 | 4 | 5 | 163 | 12 | 175 | 8.05e-20 | 87.4 |
| MS.gene003876.t1 | AT2G24790 | 43.478 | 92 | 43 | 1 | 5 | 96 | 8 | 90 | 1.20e-18 | 82.0 |
| MS.gene003876.t1 | AT2G24790 | 43.478 | 92 | 43 | 1 | 5 | 96 | 8 | 90 | 1.31e-18 | 83.2 |
| MS.gene003876.t1 | AT3G02380 | 43.478 | 92 | 43 | 1 | 5 | 96 | 16 | 98 | 1.55e-17 | 80.9 |
| MS.gene003876.t1 | AT5G15840 | 35.200 | 125 | 72 | 1 | 5 | 129 | 20 | 135 | 2.35e-17 | 79.3 |
| MS.gene003876.t1 | AT5G15840 | 35.200 | 125 | 72 | 1 | 5 | 129 | 20 | 135 | 2.40e-17 | 80.5 |
| MS.gene003876.t1 | AT4G38960 | 32.000 | 175 | 68 | 4 | 1 | 127 | 1 | 172 | 5.61e-17 | 77.4 |
| MS.gene003876.t1 | AT5G24930 | 41.667 | 96 | 47 | 1 | 5 | 100 | 6 | 92 | 7.75e-17 | 79.0 |
| MS.gene003876.t1 | AT2G47890 | 42.353 | 85 | 40 | 1 | 5 | 89 | 13 | 88 | 2.19e-14 | 71.6 |
| MS.gene003876.t1 | AT2G47890 | 42.353 | 85 | 40 | 1 | 5 | 89 | 13 | 88 | 2.23e-14 | 71.6 |
| MS.gene003876.t1 | AT2G47890 | 42.353 | 85 | 40 | 1 | 5 | 89 | 13 | 88 | 4.23e-14 | 69.7 |
| MS.gene003876.t1 | AT1G28050 | 34.653 | 101 | 57 | 1 | 2 | 102 | 6 | 97 | 3.88e-13 | 68.6 |
| MS.gene003876.t1 | AT1G68190 | 34.375 | 96 | 52 | 2 | 1 | 96 | 39 | 123 | 7.23e-13 | 67.8 |
| MS.gene003876.t1 | AT1G68190 | 34.375 | 96 | 52 | 2 | 1 | 96 | 10 | 94 | 8.09e-13 | 67.4 |
| MS.gene003876.t1 | AT1G68190 | 34.375 | 96 | 52 | 2 | 1 | 96 | 10 | 94 | 8.09e-13 | 67.4 |
| MS.gene003876.t1 | AT2G33500 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 1.20e-12 | 67.0 |
| MS.gene003876.t1 | AT2G33500 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 1.24e-12 | 67.0 |
| MS.gene003876.t1 | AT3G07650 | 37.647 | 85 | 44 | 1 | 1 | 85 | 1 | 76 | 1.39e-12 | 66.6 |
| MS.gene003876.t1 | AT3G07650 | 37.647 | 85 | 44 | 1 | 1 | 85 | 1 | 76 | 1.39e-12 | 66.6 |
| MS.gene003876.t1 | AT3G07650 | 37.647 | 85 | 44 | 1 | 1 | 85 | 1 | 76 | 1.39e-12 | 66.6 |
| MS.gene003876.t1 | AT3G07650 | 37.647 | 85 | 44 | 1 | 1 | 85 | 1 | 76 | 1.39e-12 | 66.6 |
| MS.gene003876.t1 | AT5G48250 | 32.653 | 98 | 55 | 2 | 1 | 96 | 1 | 89 | 1.95e-11 | 63.5 |
| MS.gene003876.t1 | AT5G57660 | 33.333 | 93 | 49 | 2 | 4 | 96 | 21 | 100 | 2.65e-11 | 62.8 |
Find 50 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGTAGCTGGTAGTCTTTC+TGG | 0.109250 | 4.2:+38523868 | MS.gene003876:CDS |
| TTGGGCTGTTGATGATTTCT+TGG | 0.216145 | 4.2:+38524050 | MS.gene003876:CDS |
| GATGATTTCTTGGAATTAAC+TGG | 0.278064 | 4.2:+38524060 | MS.gene003876:CDS |
| CAGAAGCAATCCATGGAGTT+TGG | 0.289917 | 4.2:+38524666 | MS.gene003876:intron |
| ACTTGGCAGATATCACATTT+AGG | 0.310599 | 4.2:-38522873 | None:intergenic |
| GTAAGACATATAAGATTTAG+AGG | 0.311347 | 4.2:-38524811 | None:intergenic |
| ACACTGCCAGCATGCATTAC+TGG | 0.340744 | 4.2:-38524774 | None:intergenic |
| ACGGGAACTTGTTGCGTGTC+TGG | 0.356267 | 4.2:-38523985 | None:intergenic |
| TACTGGTATCCGTGTGGCTT+TGG | 0.357752 | 4.2:+38523912 | MS.gene003876:CDS |
| TAAAGTTGTCTTACCTTGTC+TGG | 0.367338 | 4.2:-38524093 | None:intergenic |
| TGCCTAGTTTCGCATCCTCT+TGG | 0.378192 | 4.2:+38524031 | MS.gene003876:CDS |
| GCCTAGTTTCGCATCCTCTT+GGG | 0.385410 | 4.2:+38524032 | MS.gene003876:CDS |
| AGACTACCAGCTACATGAAT+TGG | 0.402532 | 4.2:-38523862 | None:intergenic |
| CTAAACCTTCCTGAGGAAAC+TGG | 0.421815 | 4.2:-38524728 | None:intergenic |
| TAAGATTTAGAGGCTTTGTA+AGG | 0.437114 | 4.2:-38524801 | None:intergenic |
| CGATGATGATGAGCACTTCA+TGG | 0.441777 | 4.2:+38524866 | MS.gene003876:CDS |
| CATGTGCTTTAGCCGAGATC+TGG | 0.447542 | 4.2:-38524891 | None:intergenic |
| TGGAGTTTGGAGAGCTTGAA+TGG | 0.451045 | 4.2:+38524679 | MS.gene003876:CDS |
| TGTTGCGTGTCTGGATTAGA+TGG | 0.466529 | 4.2:-38523976 | None:intergenic |
| GCACAACAAATCACCGTAGC+AGG | 0.495596 | 4.2:-38522744 | None:intergenic |
| CTGGATTAGATGGTTCAACT+TGG | 0.497438 | 4.2:-38523966 | None:intergenic |
| TTTCAATGACCAGTTTCCTC+AGG | 0.500064 | 4.2:+38524719 | MS.gene003876:CDS |
| CTGAGGAGGAGAAACTTTGA+CGG | 0.504586 | 4.2:-38524004 | None:intergenic |
| CACTTCATGGTGCCAGATCT+CGG | 0.507917 | 4.2:+38524879 | MS.gene003876:CDS |
| CACCAGCGCTTCCTTGCTAC+TGG | 0.509921 | 4.2:+38523895 | MS.gene003876:CDS |
| CTTGAATGGCTATCGGATGC+AGG | 0.516958 | 4.2:+38524693 | MS.gene003876:CDS |
| TCAACACAAAATATGAAAGC+TGG | 0.522233 | 4.2:-38523805 | None:intergenic |
| TACCAGTAGCAAGGAAGCGC+TGG | 0.525649 | 4.2:-38523897 | None:intergenic |
| GCCCAAGAGGATGCGAAACT+AGG | 0.529539 | 4.2:-38524033 | None:intergenic |
| TCATGTCGGACTTCAATCCT+AGG | 0.531676 | 4.2:-38524840 | None:intergenic |
| AGACCGAGCACTGTTCTGTA+AGG | 0.533969 | 4.2:+38523828 | MS.gene003876:CDS |
| AGCTTGCTAGCAAGCATCAA+AGG | 0.550543 | 4.2:+38522820 | MS.gene003876:CDS |
| TTCAAGCTCTCCAAACTCCA+TGG | 0.552963 | 4.2:-38524676 | None:intergenic |
| TGGAGAGCTTGAATGGCTAT+CGG | 0.557707 | 4.2:+38524686 | MS.gene003876:CDS |
| AAACTAGGCACTTGCTGAGG+AGG | 0.565089 | 4.2:-38524018 | None:intergenic |
| CAACTTCCAGTAATGCATGC+TGG | 0.570734 | 4.2:+38524768 | MS.gene003876:CDS |
| TGAGGAGGAGAAACTTTGAC+GGG | 0.575513 | 4.2:-38524003 | None:intergenic |
| AATGACCAGTTTCCTCAGGA+AGG | 0.575639 | 4.2:+38524723 | MS.gene003876:CDS |
| CATCATCATCGTCTTCATGT+CGG | 0.589449 | 4.2:-38524854 | None:intergenic |
| GAAATCATCAACAGCCCAAG+AGG | 0.601713 | 4.2:-38524046 | None:intergenic |
| CAGTAGCAAGGAAGCGCTGG+TGG | 0.607311 | 4.2:-38523894 | None:intergenic |
| GATGAACCAATTCATGTAGC+TGG | 0.610215 | 4.2:+38523856 | MS.gene003876:CDS |
| TGGCTTTGATTCACCAGACA+AGG | 0.610663 | 4.2:+38524080 | MS.gene003876:CDS |
| GCATGCATTACTGGAAGTTG+CGG | 0.617995 | 4.2:-38524765 | None:intergenic |
| AACTAGAAGCCAAAGCCACA+CGG | 0.621527 | 4.2:-38523921 | None:intergenic |
| AGTCCTTACAGAACAGTGCT+CGG | 0.631276 | 4.2:-38523831 | None:intergenic |
| GCGAAACTAGGCACTTGCTG+AGG | 0.649769 | 4.2:-38524021 | None:intergenic |
| CCTTGCTACTGGTATCCGTG+TGG | 0.669909 | 4.2:+38523906 | MS.gene003876:CDS |
| CCACACGGATACCAGTAGCA+AGG | 0.684874 | 4.2:-38523906 | None:intergenic |
| GCTGCAGCTAAACCTTCCTG+AGG | 0.726877 | 4.2:-38524735 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTAAAATAATATTTT+TGG | + | chr4.2:38523024-38523043 | MS.gene003876:intron | 0.0% |
| !! | AATTAAAAAAAAGACTTTAA+AGG | - | chr4.2:38523011-38523030 | None:intergenic | 10.0% |
| !! | CAAATATTAAAACAATATAA+AGG | - | chr4.2:38524623-38524642 | None:intergenic | 10.0% |
| !!! | AATAATATATTGAATTTTGT+AGG | + | chr4.2:38523068-38523087 | MS.gene003876:intron | 10.0% |
| !!! | CTTTATATTGTTTTAATATT+TGG | + | chr4.2:38524621-38524640 | MS.gene003876:intron | 10.0% |
| !! | AATAAATTATTATGAGAGTT+TGG | + | chr4.2:38523155-38523174 | MS.gene003876:intron | 15.0% |
| !! | ATATTAAAACAATATAAAGG+AGG | - | chr4.2:38524620-38524639 | None:intergenic | 15.0% |
| !! | CTTCTTATTCAAAATAAATA+GGG | - | chr4.2:38523533-38523552 | None:intergenic | 15.0% |
| !! | GCTTCTTATTCAAAATAAAT+AGG | - | chr4.2:38523534-38523553 | None:intergenic | 20.0% |
| !! | GTGCAAAAAAAAAATAACAT+GGG | - | chr4.2:38523209-38523228 | None:intergenic | 20.0% |
| !! | TACTGTTAACATAATCATAA+AGG | - | chr4.2:38524581-38524600 | None:intergenic | 20.0% |
| !! | TGTGCAAAAAAAAAATAACA+TGG | - | chr4.2:38523210-38523229 | None:intergenic | 20.0% |
| !!! | ATTTTGTAGGATTTAAGATT+AGG | + | chr4.2:38523081-38523100 | MS.gene003876:intron | 20.0% |
| !!! | TCTGTTTATATGAATTTTTG+AGG | + | chr4.2:38524494-38524513 | MS.gene003876:intron | 20.0% |
| !!! | TTTTGTAGGATTTAAGATTA+GGG | + | chr4.2:38523082-38523101 | MS.gene003876:intron | 20.0% |
| ! | AAAATCTTCATGAATCTACA+TGG | - | chr4.2:38523254-38523273 | None:intergenic | 25.0% |
| ! | AATCAATGTCTTGGAATAAA+TGG | + | chr4.2:38523386-38523405 | MS.gene003876:intron | 25.0% |
| ! | ATAATTGTCTTTGATTGGAT+TGG | + | chr4.2:38523322-38523341 | MS.gene003876:intron | 25.0% |
| ! | ATAGATAGAAATCAATGTCT+TGG | + | chr4.2:38523377-38523396 | MS.gene003876:intron | 25.0% |
| ! | ATCCTATAGTTATAAGATGA+AGG | - | chr4.2:38523782-38523801 | None:intergenic | 25.0% |
| ! | ATGCTATAATTGTCTTTGAT+TGG | + | chr4.2:38523317-38523336 | MS.gene003876:intron | 25.0% |
| ! | CATTATTTCATTAAACGAAC+TGG | - | chr4.2:38524422-38524441 | None:intergenic | 25.0% |
| ! | GTAAGACATATAAGATTTAG+AGG | - | chr4.2:38524814-38524833 | None:intergenic | 25.0% |
| ! | TCATATAAACAGAAACCAAA+CGG | - | chr4.2:38524487-38524506 | None:intergenic | 25.0% |
| ! | TGAGAGATTATGATTTATGA+TGG | + | chr4.2:38524171-38524190 | MS.gene003876:intron | 25.0% |
| !! | AGATTATGATTTATGATGGA+GGG | + | chr4.2:38524175-38524194 | MS.gene003876:intron | 25.0% |
| !!! | AAGACATTGATTTCTATCTA+TGG | - | chr4.2:38523378-38523397 | None:intergenic | 25.0% |
| !!! | ATTTTGAATAAGAAGCATCT+AGG | + | chr4.2:38523538-38523557 | MS.gene003876:intron | 25.0% |
| AAAATTGCAATATTCGGATC+GGG | - | chr4.2:38523671-38523690 | None:intergenic | 30.0% | |
| AAATGCTAAATCTGATGTAC+TGG | - | chr4.2:38523581-38523600 | None:intergenic | 30.0% | |
| AATGCTAAATCTGATGTACT+GGG | - | chr4.2:38523580-38523599 | None:intergenic | 30.0% | |
| AGCAAAAACAAAACCATACT+TGG | - | chr4.2:38522893-38522912 | None:intergenic | 30.0% | |
| ATATGTCTTACAAAAAGCCT+AGG | + | chr4.2:38524823-38524842 | MS.gene003876:CDS | 30.0% | |
| GAAAATTGCAATATTCGGAT+CGG | - | chr4.2:38523672-38523691 | None:intergenic | 30.0% | |
| GAGATTATGATTTATGATGG+AGG | + | chr4.2:38524174-38524193 | MS.gene003876:intron | 30.0% | |
| GATGATTTCTTGGAATTAAC+TGG | + | chr4.2:38524060-38524079 | MS.gene003876:CDS | 30.0% | |
| TCAACACAAAATATGAAAGC+TGG | - | chr4.2:38523808-38523827 | None:intergenic | 30.0% | |
| TGAGGTCTTGAATTAATACT+TGG | + | chr4.2:38524512-38524531 | MS.gene003876:intron | 30.0% | |
| ! | TAAGATTTAGAGGCTTTGTA+AGG | - | chr4.2:38524804-38524823 | None:intergenic | 30.0% |
| ! | TGTTGATAAATGATCTGTGA+AGG | + | chr4.2:38524270-38524289 | MS.gene003876:intron | 30.0% |
| ! | TTGCTTCTGAAAAGAAAGAA+AGG | - | chr4.2:38524655-38524674 | None:intergenic | 30.0% |
| ! | TTTTGAATTGTGTTTCGAAC+TGG | + | chr4.2:38523699-38523718 | MS.gene003876:intron | 30.0% |
| !! | ACACTTTTGATCGATTCTTT+AGG | - | chr4.2:38523503-38523522 | None:intergenic | 30.0% |
| !!! | ATGGATGATTTTACTGACTT+TGG | + | chr4.2:38523756-38523775 | MS.gene003876:intron | 30.0% |
| AATGTGATATCTGCCAAGTA+TGG | + | chr4.2:38522877-38522896 | MS.gene003876:intron | 35.0% | |
| ACTTGGCAGATATCACATTT+AGG | - | chr4.2:38522876-38522895 | None:intergenic | 35.0% | |
| CCGGTGAAAATTGCAATATT+CGG | - | chr4.2:38523677-38523696 | None:intergenic | 35.0% | |
| CGAAACACAATTCAAAATCC+CGG | - | chr4.2:38523696-38523715 | None:intergenic | 35.0% | |
| GGCCTTCATCTTATAACTAT+AGG | + | chr4.2:38523777-38523796 | MS.gene003876:intron | 35.0% | |
| TAAAGTTGTCTTACCTTGTC+TGG | - | chr4.2:38524096-38524115 | None:intergenic | 35.0% | |
| ! | CCGAATATTGCAATTTTCAC+CGG | + | chr4.2:38523674-38523693 | MS.gene003876:intron | 35.0% |
| ! | CGAATATTGCAATTTTCACC+GGG | + | chr4.2:38523675-38523694 | MS.gene003876:intron | 35.0% |
| ! | GTTGAAGTATTTGCTGAACA+TGG | + | chr4.2:38523737-38523756 | MS.gene003876:intron | 35.0% |
| ! | TTCTTTTCAGAAGCAATCCA+TGG | + | chr4.2:38524659-38524678 | MS.gene003876:intron | 35.0% |
| !! | TTGGCTTTTCTCATTGTCTT+TGG | - | chr4.2:38523950-38523969 | None:intergenic | 35.0% |
| AACCATATTTGCACAGGCAA+TGG | + | chr4.2:38524535-38524554 | MS.gene003876:intron | 40.0% | |
| ACTTGGAACCATATTTGCAC+AGG | + | chr4.2:38524529-38524548 | MS.gene003876:intron | 40.0% | |
| AGACTACCAGCTACATGAAT+TGG | - | chr4.2:38523865-38523884 | None:intergenic | 40.0% | |
| ATACCACTAGACTAACCCTT+AGG | + | chr4.2:38523461-38523480 | MS.gene003876:intron | 40.0% | |
| ATCTGTGAAGGAAACCAACT+TGG | + | chr4.2:38524282-38524301 | MS.gene003876:intron | 40.0% | |
| CATCATCATCGTCTTCATGT+CGG | - | chr4.2:38524857-38524876 | None:intergenic | 40.0% | |
| CCAAACTAACCCACCAAAAT+GGG | - | chr4.2:38524382-38524401 | None:intergenic | 40.0% | |
| GATGAACCAATTCATGTAGC+TGG | + | chr4.2:38523856-38523875 | MS.gene003876:CDS | 40.0% | |
| GATGATGTTGTGTTTGTAGC+AGG | + | chr4.2:38523408-38523427 | MS.gene003876:intron | 40.0% | |
| TACCACTAGACTAACCCTTA+GGG | + | chr4.2:38523462-38523481 | MS.gene003876:intron | 40.0% | |
| TACCATTGCCTGTGCAAATA+TGG | - | chr4.2:38524540-38524559 | None:intergenic | 40.0% | |
| TATTTGCACAGGCAATGGTA+AGG | + | chr4.2:38524540-38524559 | MS.gene003876:intron | 40.0% | |
| TCTGTGAAGGAAACCAACTT+GGG | + | chr4.2:38524283-38524302 | MS.gene003876:intron | 40.0% | |
| TTTCAATGACCAGTTTCCTC+AGG | + | chr4.2:38524719-38524738 | MS.gene003876:CDS | 40.0% | |
| ! | CTGGATTAGATGGTTCAACT+TGG | - | chr4.2:38523969-38523988 | None:intergenic | 40.0% |
| !! | GATTCTCTAAAGCCATTGCA+CGG | - | chr4.2:38523649-38523668 | None:intergenic | 40.0% |
| !! | TAAGGGTTAGTCTAGTGGTA+TGG | - | chr4.2:38523462-38523481 | None:intergenic | 40.0% |
| !! | TTGGGCTGTTGATGATTTCT+TGG | + | chr4.2:38524050-38524069 | MS.gene003876:CDS | 40.0% |
| AAAGCCATTGCACGGTGTAA+CGG | - | chr4.2:38523641-38523660 | None:intergenic | 45.0% | |
| AACTAGAAGCCAAAGCCACA+CGG | - | chr4.2:38523924-38523943 | None:intergenic | 45.0% | |
| AATGACCAGTTTCCTCAGGA+AGG | + | chr4.2:38524723-38524742 | MS.gene003876:CDS | 45.0% | |
| AGTCCTTACAGAACAGTGCT+CGG | - | chr4.2:38523834-38523853 | None:intergenic | 45.0% | |
| ATGTCCTATTCGTGCCCTAA+GGG | - | chr4.2:38523479-38523498 | None:intergenic | 45.0% | |
| CAACTTCCAGTAATGCATGC+TGG | + | chr4.2:38524768-38524787 | MS.gene003876:CDS | 45.0% | |
| CAGAAGCAATCCATGGAGTT+TGG | + | chr4.2:38524666-38524685 | MS.gene003876:intron | 45.0% | |
| CAGGAATCGAACCCTTTCTT+CGG | + | chr4.2:38523427-38523446 | MS.gene003876:intron | 45.0% | |
| CATGTAGCTGGTAGTCTTTC+TGG | + | chr4.2:38523868-38523887 | MS.gene003876:CDS | 45.0% | |
| CTAAACCTTCCTGAGGAAAC+TGG | - | chr4.2:38524731-38524750 | None:intergenic | 45.0% | |
| CTGAGGAGGAGAAACTTTGA+CGG | - | chr4.2:38524007-38524026 | None:intergenic | 45.0% | |
| GAAATCATCAACAGCCCAAG+AGG | - | chr4.2:38524049-38524068 | None:intergenic | 45.0% | |
| GCATGCATTACTGGAAGTTG+CGG | - | chr4.2:38524768-38524787 | None:intergenic | 45.0% | |
| GCCAAACTAACCCACCAAAA+TGG | - | chr4.2:38524383-38524402 | None:intergenic | 45.0% | |
| GTGTGAAAAAGCTCCTGCTA+CGG | + | chr4.2:38522731-38522750 | MS.gene003876:CDS | 45.0% | |
| TAACCCACCAAAATGGGTAC+CGG | - | chr4.2:38524376-38524395 | None:intergenic | 45.0% | |
| TACACACTAACTCTGCCGTT+TGG | + | chr4.2:38524469-38524488 | MS.gene003876:intron | 45.0% | |
| TCATGTCGGACTTCAATCCT+AGG | - | chr4.2:38524843-38524862 | None:intergenic | 45.0% | |
| TGAAGGAAACCAACTTGGGT+TGG | + | chr4.2:38524287-38524306 | MS.gene003876:intron | 45.0% | |
| TGAGGAGGAGAAACTTTGAC+GGG | - | chr4.2:38524006-38524025 | None:intergenic | 45.0% | |
| TGGAGAGCTTGAATGGCTAT+CGG | + | chr4.2:38524686-38524705 | MS.gene003876:CDS | 45.0% | |
| TGGAGTTTGGAGAGCTTGAA+TGG | + | chr4.2:38524679-38524698 | MS.gene003876:CDS | 45.0% | |
| TTCAAGCTCTCCAAACTCCA+TGG | - | chr4.2:38524679-38524698 | None:intergenic | 45.0% | |
| ! | CGATGATGATGAGCACTTCA+TGG | + | chr4.2:38524866-38524885 | MS.gene003876:CDS | 45.0% |
| ! | TGTTGCGTGTCTGGATTAGA+TGG | - | chr4.2:38523979-38523998 | None:intergenic | 45.0% |
| !! | AGCTTGCTAGCAAGCATCAA+AGG | + | chr4.2:38522820-38522839 | MS.gene003876:CDS | 45.0% |
| !! | GGGTTAGTTTGGCTCTATGA+AGG | + | chr4.2:38524390-38524409 | MS.gene003876:intron | 45.0% |
| !! | TGGCTTTGATTCACCAGACA+AGG | + | chr4.2:38524080-38524099 | MS.gene003876:CDS | 45.0% |
| !!! | CCCATTTTGGTGGGTTAGTT+TGG | + | chr4.2:38524379-38524398 | MS.gene003876:intron | 45.0% |
| AACCCACCAAAATGGGTACC+GGG | - | chr4.2:38524375-38524394 | None:intergenic | 50.0% | |
| AAGCCATTGCACGGTGTAAC+GGG | - | chr4.2:38523640-38523659 | None:intergenic | 50.0% | |
| ACACTGCCAGCATGCATTAC+TGG | - | chr4.2:38524777-38524796 | None:intergenic | 50.0% | |
| ACCACAAAGCCAACCCAAGT+TGG | - | chr4.2:38524299-38524318 | None:intergenic | 50.0% | |
| ATCGAACCTGAGACCTTGAG+AGG | - | chr4.2:38524348-38524367 | None:intergenic | 50.0% | |
| CATGTCCTATTCGTGCCCTA+AGG | - | chr4.2:38523480-38523499 | None:intergenic | 50.0% | |
| CTAACCCTTAGGGCACGAAT+AGG | + | chr4.2:38523472-38523491 | MS.gene003876:intron | 50.0% | |
| CTTGAATGGCTATCGGATGC+AGG | + | chr4.2:38524693-38524712 | MS.gene003876:CDS | 50.0% | |
| GCACAACAAATCACCGTAGC+AGG | - | chr4.2:38522747-38522766 | None:intergenic | 50.0% | |
| GCCTAGTTTCGCATCCTCTT+GGG | + | chr4.2:38524032-38524051 | MS.gene003876:CDS | 50.0% | |
| GGACTGAGACACCGAAGAAA+GGG | - | chr4.2:38523441-38523460 | None:intergenic | 50.0% | |
| TACTGGTATCCGTGTGGCTT+TGG | + | chr4.2:38523912-38523931 | MS.gene003876:CDS | 50.0% | |
| TGCCTAGTTTCGCATCCTCT+TGG | + | chr4.2:38524031-38524050 | MS.gene003876:CDS | 50.0% | |
| TGGACTGAGACACCGAAGAA+AGG | - | chr4.2:38523442-38523461 | None:intergenic | 50.0% | |
| ! | AAACTAGGCACTTGCTGAGG+AGG | - | chr4.2:38524021-38524040 | None:intergenic | 50.0% |
| ! | AGACCGAGCACTGTTCTGTA+AGG | + | chr4.2:38523828-38523847 | MS.gene003876:CDS | 50.0% |
| ! | ATTCTCCCCGGTACCCATTT+TGG | + | chr4.2:38524366-38524385 | MS.gene003876:intron | 50.0% |
| ! | CACTTCATGGTGCCAGATCT+CGG | + | chr4.2:38524879-38524898 | MS.gene003876:CDS | 50.0% |
| !! | ACCAACTTGGGTTGGCTTTG+TGG | + | chr4.2:38524295-38524314 | MS.gene003876:intron | 50.0% |
| !! | TGCCCTAAGGGTTAGTCTAG+TGG | - | chr4.2:38523467-38523486 | None:intergenic | 50.0% |
| !! | TGGCTTTGTGGTGTTGGCTT+GGG | + | chr4.2:38524307-38524326 | MS.gene003876:intron | 50.0% |
| !! | TTGGCTTTGTGGTGTTGGCT+TGG | + | chr4.2:38524306-38524325 | MS.gene003876:intron | 50.0% |
| !! | TTGGGTTGGCTTTGTGGTGT+TGG | + | chr4.2:38524301-38524320 | MS.gene003876:intron | 50.0% |
| CAACCCGTTACACCGTGCAA+TGG | + | chr4.2:38523634-38523653 | MS.gene003876:intron | 55.0% | |
| CCACACGGATACCAGTAGCA+AGG | - | chr4.2:38523909-38523928 | None:intergenic | 55.0% | |
| CCTTGCTACTGGTATCCGTG+TGG | + | chr4.2:38523906-38523925 | MS.gene003876:CDS | 55.0% | |
| CTTGGAGTGTGCTCCTCTCA+AGG | + | chr4.2:38524332-38524351 | MS.gene003876:intron | 55.0% | |
| GCCCAAGAGGATGCGAAACT+AGG | - | chr4.2:38524036-38524055 | None:intergenic | 55.0% | |
| GCTGCAGCTAAACCTTCCTG+AGG | - | chr4.2:38524738-38524757 | None:intergenic | 55.0% | |
| GTCTCAGGTTCGATTCTCCC+CGG | + | chr4.2:38524354-38524373 | MS.gene003876:intron | 55.0% | |
| TGTGCTCCTCTCAAGGTCTC+AGG | + | chr4.2:38524339-38524358 | MS.gene003876:intron | 55.0% | |
| ! | ACCCACCAAAATGGGTACCG+GGG | - | chr4.2:38524374-38524393 | None:intergenic | 55.0% |
| ! | CTTGAGAGGAGCACACTCCA+AGG | - | chr4.2:38524334-38524353 | None:intergenic | 55.0% |
| ! | GCGAAACTAGGCACTTGCTG+AGG | - | chr4.2:38524024-38524043 | None:intergenic | 55.0% |
| ! | TACCAGTAGCAAGGAAGCGC+TGG | - | chr4.2:38523900-38523919 | None:intergenic | 55.0% |
| !! | ACGGGAACTTGTTGCGTGTC+TGG | - | chr4.2:38523988-38524007 | None:intergenic | 55.0% |
| !! | TCCCCGGTACCCATTTTGGT+GGG | + | chr4.2:38524370-38524389 | MS.gene003876:intron | 55.0% |
| !! | TTGCACGGTGTAACGGGTTG+TGG | - | chr4.2:38523634-38523653 | None:intergenic | 55.0% |
| CACCAGCGCTTCCTTGCTAC+TGG | + | chr4.2:38523895-38523914 | MS.gene003876:CDS | 60.0% | |
| ! | CTCCCCGGTACCCATTTTGG+TGG | + | chr4.2:38524369-38524388 | MS.gene003876:intron | 60.0% |
| !! | CAGTAGCAAGGAAGCGCTGG+TGG | - | chr4.2:38523897-38523916 | None:intergenic | 60.0% |
| !! | GTGGTGTTGGCTTGGGACCT+TGG | + | chr4.2:38524314-38524333 | MS.gene003876:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 38522711 | 38524905 | 38522711 | ID=MS.gene003876 |
| chr4.2 | mRNA | 38522711 | 38524905 | 38522711 | ID=MS.gene003876.t1;Parent=MS.gene003876 |
| chr4.2 | exon | 38522711 | 38522893 | 38522711 | ID=MS.gene003876.t1.exon1;Parent=MS.gene003876.t1 |
| chr4.2 | CDS | 38522711 | 38522893 | 38522711 | ID=cds.MS.gene003876.t1;Parent=MS.gene003876.t1 |
| chr4.2 | exon | 38523799 | 38524101 | 38523799 | ID=MS.gene003876.t1.exon2;Parent=MS.gene003876.t1 |
| chr4.2 | CDS | 38523799 | 38524101 | 38523799 | ID=cds.MS.gene003876.t1;Parent=MS.gene003876.t1 |
| chr4.2 | exon | 38524669 | 38524905 | 38524669 | ID=MS.gene003876.t1.exon3;Parent=MS.gene003876.t1 |
| chr4.2 | CDS | 38524669 | 38524905 | 38524669 | ID=cds.MS.gene003876.t1;Parent=MS.gene003876.t1 |
| Gene Sequence |
| Protein sequence |
