AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003879

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003879.t1 MTR_4g067290 95.367 259 10 2 3 260 40 297 2.00e-174 482
MS.gene003879.t1 MTR_4g067290 95.294 255 11 1 7 260 3 257 1.46e-173 478
MS.gene003879.t1 MTR_4g067290 94.510 255 11 2 7 260 3 255 5.60e-170 469
MS.gene003879.t1 MTR_4g067290 94.510 255 11 2 7 260 1 253 7.81e-170 469
MS.gene003879.t1 MTR_4g067290 95.359 237 10 1 25 260 1 237 1.36e-159 442
MS.gene003879.t1 MTR_4g067290 94.515 237 10 2 25 260 1 235 3.31e-156 434
MS.gene003879.t1 MTR_2g098920 64.567 254 83 6 7 256 6 256 1.56e-109 317
MS.gene003879.t1 MTR_3g006370 43.684 190 97 3 73 258 44 227 8.36e-44 148
MS.gene003879.t1 MTR_2g098880 36.923 195 105 6 71 251 53 243 6.36e-35 126
MS.gene003879.t1 MTR_2g098880 36.923 195 105 6 71 251 65 255 1.18e-34 125
MS.gene003879.t1 MTR_5g015480 42.593 108 56 3 79 182 56 161 2.94e-18 82.0
MS.gene003879.t1 MTR_1g057920 45.652 92 44 3 79 166 34 123 2.54e-16 73.6
MS.gene003879.t1 MTR_0402s0040 41.121 107 57 3 79 181 26 130 4.27e-15 74.7
MS.gene003879.t1 MTR_2g070590 37.864 103 62 2 79 179 17 119 3.81e-13 65.1
MS.gene003879.t1 MTR_6g017200 38.776 98 54 3 79 172 58 153 1.60e-12 63.9
MS.gene003879.t1 MTR_7g113010 33.835 133 62 5 79 201 457 573 7.78e-12 65.5
MS.gene003879.t1 MTR_1g070355 31.126 151 91 7 40 179 29 177 3.00e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003879.t1 AT3G59470 59.227 233 84 4 36 260 20 249 7.19e-95 279
MS.gene003879.t1 AT3G59470 59.227 233 84 4 36 260 20 249 7.19e-95 279
MS.gene003879.t1 AT3G59470 59.227 233 84 4 36 260 32 261 1.09e-94 279
MS.gene003879.t1 AT3G07500 42.938 177 98 3 78 251 32 208 2.61e-44 149
MS.gene003879.t1 AT2G43280 38.571 210 105 5 47 251 2 192 2.14e-37 131
MS.gene003879.t1 AT4G12850 35.714 182 109 3 73 253 5 179 6.13e-32 116
MS.gene003879.t1 AT2G43280 39.877 163 86 4 94 251 2 157 4.90e-31 113
MS.gene003879.t1 AT4G38180 54.630 108 45 2 78 181 72 179 1.59e-24 102
MS.gene003879.t1 AT4G12850 40.650 123 70 2 73 194 5 125 3.30e-24 94.7
MS.gene003879.t1 AT4G12850 42.056 107 60 1 73 179 5 109 8.50e-24 94.0
MS.gene003879.t1 AT5G18960 36.184 152 71 2 36 187 14 139 6.99e-23 98.2
MS.gene003879.t1 AT5G18960 37.963 108 55 1 75 182 207 302 8.46e-20 89.0
MS.gene003879.t1 AT5G18960 36.184 152 71 2 36 187 14 139 6.99e-23 98.2
MS.gene003879.t1 AT5G18960 37.963 108 55 1 75 182 207 302 8.46e-20 89.0
MS.gene003879.t1 AT3G06250 38.793 116 59 1 76 191 187 290 5.34e-21 92.4
MS.gene003879.t1 AT3G06250 40.952 105 50 1 75 179 24 116 1.97e-20 90.9
MS.gene003879.t1 AT3G06250 38.793 116 59 1 76 191 187 290 5.34e-21 92.4
MS.gene003879.t1 AT3G06250 40.952 105 50 1 75 179 24 116 1.97e-20 90.9
MS.gene003879.t1 AT3G06250 38.793 116 59 1 76 191 187 290 5.34e-21 92.4
MS.gene003879.t1 AT3G06250 40.952 105 50 1 75 179 24 116 1.97e-20 90.9
MS.gene003879.t1 AT1G52520 38.835 103 60 1 77 179 83 182 1.28e-17 82.4
MS.gene003879.t1 AT1G80010 37.736 106 63 1 76 181 92 194 2.16e-16 79.0
MS.gene003879.t1 AT2G32250 38.182 110 62 2 74 181 33 138 4.42e-15 75.1
MS.gene003879.t1 AT2G32250 38.182 110 62 2 74 181 33 138 4.66e-15 75.1
MS.gene003879.t1 AT2G32250 38.182 110 62 2 74 181 33 138 4.66e-15 75.1
MS.gene003879.t1 AT2G32250 38.182 110 62 2 74 181 33 138 4.66e-15 75.1
MS.gene003879.t1 AT2G32250 38.182 110 62 2 74 181 33 138 4.75e-15 75.1
MS.gene003879.t1 AT2G32250 38.182 110 62 2 74 181 33 138 4.75e-15 75.1
MS.gene003879.t1 AT4G19990 28.966 145 75 2 82 212 38 168 2.15e-14 73.2
MS.gene003879.t1 AT4G19990 28.966 145 75 2 82 212 24 154 2.18e-14 73.2
MS.gene003879.t1 AT4G19990 28.966 145 75 2 82 212 24 154 2.18e-14 73.2
MS.gene003879.t1 AT4G19990 28.966 145 75 2 82 212 24 154 2.24e-14 73.2
MS.gene003879.t1 AT4G19990 28.966 145 75 2 82 212 24 154 2.24e-14 73.2
MS.gene003879.t1 AT4G19990 28.966 145 75 2 82 212 24 154 2.24e-14 73.2
MS.gene003879.t1 AT2G32250 39.000 100 55 2 84 181 2 97 4.30e-14 72.0
MS.gene003879.t1 AT2G32250 39.000 100 55 2 84 181 2 97 4.50e-14 72.0
MS.gene003879.t1 AT3G22170 28.859 149 89 4 54 187 46 192 1.23e-11 65.1
MS.gene003879.t1 AT3G22170 28.859 149 89 4 54 187 46 192 1.23e-11 65.1

Find 62 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAAATTAATTCTGGTAAA+TGG 0.122359 4.2:+38544717 MS.gene003879:CDS
TTATGTTCTTCTTCTTCTTT+AGG 0.197944 4.2:-38545627 None:intergenic
TCTGTATCGTTCTATGTATC+TGG 0.244963 4.2:+38544145 None:intergenic
CAGAAACAAGGGTTGGTTGC+AGG 0.300475 4.2:+38544678 MS.gene003879:CDS
TCTATGTATCTGGGCTTCTT+AGG 0.304144 4.2:+38544155 None:intergenic
GAAAATTAATTCTGGTAAAT+GGG 0.333770 4.2:+38544718 MS.gene003879:CDS
ATGATGAGGAAAATTAATTC+TGG 0.337234 4.2:+38544710 MS.gene003879:CDS
ATCTCCTTTCTACTACTTCC+AGG 0.346138 4.2:-38544782 None:intergenic
GAGATTGATGACTCTGTTAA+CGG 0.380618 4.2:+38544269 MS.gene003879:CDS
AGGAAAGACGGAACTGCTAT+TGG 0.388968 4.2:+38544584 MS.gene003879:CDS
AACGTGACTCAAGATTCTTC+TGG 0.391633 4.2:+38544395 MS.gene003879:CDS
CTTGAGTCACGTTATCATCT+TGG 0.395456 4.2:-38544385 None:intergenic
TCTTCTTCCATGTATTCATC+AGG 0.412222 4.2:-38544335 None:intergenic
TCTTGGTCTTGTTTGTAAGA+TGG 0.422563 4.2:-38544368 None:intergenic
TCTACTACTTCCAGGATTCA+AGG 0.432111 4.2:-38544774 None:intergenic
GGAGATGTTTGAAATTTATC+CGG 0.433714 4.2:+38544799 MS.gene003879:CDS
TTCTGCTGAGGAGCCTTATG+TGG 0.437415 4.2:+38544463 MS.gene003879:CDS
GGCTCCTCAGCAGAAGCGTC+TGG 0.448272 4.2:-38544455 None:intergenic
TAAGCAAGCTCTCACGATCA+AGG 0.471737 4.2:+38544564 MS.gene003879:CDS
CACACACATCCCTTGAATCC+TGG 0.472295 4.2:+38544764 MS.gene003879:CDS
CCAACTGCTGAGATAGTTCG+CGG 0.495662 4.2:-38545476 None:intergenic
CTGTATCGTTCTATGTATCT+GGG 0.499393 4.2:+38544146 None:intergenic
TCGAACTCTTGACCCACATA+AGG 0.503181 4.2:-38544476 None:intergenic
CTACTACTTCCAGGATTCAA+GGG 0.508347 4.2:-38544773 None:intergenic
AGAAACAAGGGTTGGTTGCA+GGG 0.508414 4.2:+38544679 MS.gene003879:CDS
GGTTATTACGAAGTTTGTAA+AGG 0.521568 4.2:+38544739 MS.gene003879:CDS
AGCAGAAGCGTCTGGTAGTG+TGG 0.524624 4.2:-38544447 None:intergenic
AATGCATACGCAGCCGAGGT+TGG 0.541461 4.2:+38544527 MS.gene003879:CDS
CGAAAAGATTGTGAGGCAAA+GGG 0.544339 4.2:+38544655 MS.gene003879:CDS
GCGAAAAGATTGTGAGGCAA+AGG 0.552809 4.2:+38544654 MS.gene003879:CDS
AGCATAATGTGGGTCTCTCA+AGG 0.559262 4.2:+38545565 MS.gene003879:CDS
GGCTCTTGTTTGCAACAAAG+AGG 0.560233 4.2:+38544610 MS.gene003879:CDS
AGTAGACAGTGTGAAGGAGA+TGG 0.569154 4.2:+38545602 MS.gene003879:CDS
GAATCCTGGAAGTAGTAGAA+AGG 0.569556 4.2:+38544778 MS.gene003879:CDS
GATGGTGCCATGGTTGTAGC+TGG 0.569629 4.2:+38544305 MS.gene003879:CDS
CCGCGAACTATCTCAGCAGT+TGG 0.570583 4.2:+38545476 MS.gene003879:CDS
TGGTAGTGTGGGAACTGCAG+TGG 0.577611 4.2:-38544435 None:intergenic
GCTCTTGTTTGCAACAAAGA+GGG 0.580043 4.2:+38544611 MS.gene003879:CDS
TGAGGCAAAGGGCAGAAACA+AGG 0.583136 4.2:+38544666 MS.gene003879:CDS
TAGCATACCTGATGAATACA+TGG 0.584054 4.2:+38544328 MS.gene003879:CDS
GCAGAAGCGTCTGGTAGTGT+GGG 0.584434 4.2:-38544446 None:intergenic
GGTAGTGTGGGAACTGCAGT+GGG 0.584997 4.2:-38544434 None:intergenic
AGACGGAACTGCTATTGGAC+GGG 0.589838 4.2:+38544589 MS.gene003879:CDS
CTCTCACGATCAAGGAAAGA+CGG 0.590017 4.2:+38544572 MS.gene003879:CDS
AAGACGGAACTGCTATTGGA+CGG 0.612304 4.2:+38544588 MS.gene003879:CDS
TCTGCTGAGGAGCCTTATGT+GGG 0.621782 4.2:+38544464 MS.gene003879:CDS
AGTGATATTTGATTATATCG+AGG 0.622955 4.2:+38545542 MS.gene003879:CDS
CAAAGGGCAGAAACAAGGGT+TGG 0.628129 4.2:+38544671 MS.gene003879:CDS
TTACAATGCATACGCAGCCG+AGG 0.629238 4.2:+38544523 MS.gene003879:CDS
TATGCTACCAGCTACAACCA+TGG 0.631572 4.2:-38544312 None:intergenic
GCGTATAGTAGACAGTGTGA+AGG 0.633138 4.2:+38545596 MS.gene003879:CDS
TACAGTAAGAGATGGTGCCA+TGG 0.635293 4.2:+38544295 MS.gene003879:CDS
TTATATCGAGGAGCATAATG+TGG 0.635828 4.2:+38545554 MS.gene003879:CDS
TATATCGAGGAGCATAATGT+GGG 0.635920 4.2:+38545555 MS.gene003879:CDS
ACTACCAGACGCTTCTGCTG+AGG 0.646967 4.2:+38544451 MS.gene003879:CDS
AACGGCGATACAGTAAGAGA+TGG 0.652494 4.2:+38544287 MS.gene003879:CDS
GAGGCAAAGGGCAGAAACAA+GGG 0.664007 4.2:+38544667 MS.gene003879:CDS
GCAGGGCAATGATTATGATG+AGG 0.664420 4.2:+38544696 MS.gene003879:CDS
ACAAGCGCGAAAAGATTGTG+AGG 0.665448 4.2:+38544648 MS.gene003879:CDS
GTGACTCAAGATTCTTCTGG+AGG 0.668755 4.2:+38544398 MS.gene003879:CDS
GCGTATGATGAATCCAACCT+CGG 0.694329 4.2:-38544540 None:intergenic
TGTGGGTCAAGAGTTCGAGT+CGG 0.698582 4.2:+38544481 MS.gene003879:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAAAATTAAAAATGAA+TGG - chr4.2:38545100-38545119 None:intergenic 10.0%
!! TTATAATTTATACAATTCTT+CGG - chr4.2:38544847-38544866 None:intergenic 10.0%
!! GAAAATTAATTCTGGTAAAT+GGG + chr4.2:38544718-38544737 MS.gene003879:CDS 20.0%
!!! AATGGATGAAGTATTATATA+AGG - chr4.2:38545082-38545101 None:intergenic 20.0%
!!! TAAGTAGTTAAAGGTATTAT+AGG + chr4.2:38545241-38545260 MS.gene003879:intron 20.0%
!!! TGAAGTTTTTAGGATAATAT+TGG + chr4.2:38545005-38545024 MS.gene003879:intron 20.0%
!!! TTCTTGTTATGTAGTTATAT+TGG + chr4.2:38545275-38545294 MS.gene003879:intron 20.0%
! AGTGATATTTGATTATATCG+AGG + chr4.2:38545542-38545561 MS.gene003879:CDS 25.0%
! ATGAGATGATAAGTAGTTAA+AGG + chr4.2:38545232-38545251 MS.gene003879:intron 25.0%
! ATGATGAGGAAAATTAATTC+TGG + chr4.2:38544710-38544729 MS.gene003879:CDS 25.0%
! CAACTTAGAAATTACCTTTA+CGG + chr4.2:38545327-38545346 MS.gene003879:intron 25.0%
! GATTCTCGTATATATTGTAA+TGG + chr4.2:38544893-38544912 MS.gene003879:intron 25.0%
! GGAAAATTAATTCTGGTAAA+TGG + chr4.2:38544717-38544736 MS.gene003879:CDS 25.0%
! TTATGTTCTTCTTCTTCTTT+AGG - chr4.2:38545630-38545649 None:intergenic 25.0%
!! CATTTCAGAATGAAGTTTTT+AGG + chr4.2:38544995-38545014 MS.gene003879:intron 25.0%
!! CTAAAAACTTCATTCTGAAA+TGG - chr4.2:38544997-38545016 None:intergenic 25.0%
!! GAATGAATGGTATTAGTTTA+AGG + chr4.2:38544955-38544974 MS.gene003879:intron 25.0%
AAGCATAAAGTAACAATGAC+AGG - chr4.2:38544925-38544944 None:intergenic 30.0%
AGTTAATTCTGCATTGAACT+TGG - chr4.2:38545157-38545176 None:intergenic 30.0%
CTTGATAGATTGAGAATGAA+TGG + chr4.2:38544942-38544961 MS.gene003879:intron 30.0%
GGTTATTACGAAGTTTGTAA+AGG + chr4.2:38544739-38544758 MS.gene003879:CDS 30.0%
TTTATCGCAGAGAGATAAAT+AGG + chr4.2:38545205-38545224 MS.gene003879:intron 30.0%
! CTATAAGATTTTCAGTGTTC+AGG - chr4.2:38544221-38544240 None:intergenic 30.0%
! GGAGATGTTTGAAATTTATC+CGG + chr4.2:38544799-38544818 MS.gene003879:CDS 30.0%
AGAAACAAACGAGGTAAGTA+GGG - chr4.2:38545426-38545445 None:intergenic 35.0%
TAGAAACAAACGAGGTAAGT+AGG - chr4.2:38545427-38545446 None:intergenic 35.0%
TAGCATACCTGATGAATACA+TGG + chr4.2:38544328-38544347 MS.gene003879:CDS 35.0%
TCTTCTTCCATGTATTCATC+AGG - chr4.2:38544338-38544357 None:intergenic 35.0%
! GAGATTGATGACTCTGTTAA+CGG + chr4.2:38544269-38544288 MS.gene003879:CDS 35.0%
! TAAAAAGCATAGGAACTGAC+CGG - chr4.2:38544821-38544840 None:intergenic 35.0%
! TATATCGAGGAGCATAATGT+GGG + chr4.2:38545555-38545574 MS.gene003879:CDS 35.0%
! TCTTCGGTAGTAAAAAGCAT+AGG - chr4.2:38544831-38544850 None:intergenic 35.0%
! TTATATCGAGGAGCATAATG+TGG + chr4.2:38545554-38545573 MS.gene003879:CDS 35.0%
!! TCTTGGTCTTGTTTGTAAGA+TGG - chr4.2:38544371-38544390 None:intergenic 35.0%
AAACAAACGAGGTAAGTAGG+GGG - chr4.2:38545424-38545443 None:intergenic 40.0%
AACGTGACTCAAGATTCTTC+TGG + chr4.2:38544395-38544414 MS.gene003879:CDS 40.0%
ATCTCCTTTCTACTACTTCC+AGG - chr4.2:38544785-38544804 None:intergenic 40.0%
CGAAAAGATTGTGAGGCAAA+GGG + chr4.2:38544655-38544674 MS.gene003879:CDS 40.0%
CTAAGTTGCAATTTCTCTCG+TGG - chr4.2:38545315-38545334 None:intergenic 40.0%
CTACTACTTCCAGGATTCAA+GGG - chr4.2:38544776-38544795 None:intergenic 40.0%
CTTGAGTCACGTTATCATCT+TGG - chr4.2:38544388-38544407 None:intergenic 40.0%
GAAACAAACGAGGTAAGTAG+GGG - chr4.2:38545425-38545444 None:intergenic 40.0%
GAATCCTGGAAGTAGTAGAA+AGG + chr4.2:38544778-38544797 MS.gene003879:CDS 40.0%
GACTGACATAGAAACAAACG+AGG - chr4.2:38545435-38545454 None:intergenic 40.0%
TCTACTACTTCCAGGATTCA+AGG - chr4.2:38544777-38544796 None:intergenic 40.0%
TTGCAATTTCTCTCGTGGAA+AGG - chr4.2:38545310-38545329 None:intergenic 40.0%
TTTCTCTCGTGGAAAGGATA+AGG - chr4.2:38545304-38545323 None:intergenic 40.0%
! GCTCTTGTTTGCAACAAAGA+GGG + chr4.2:38544611-38544630 MS.gene003879:CDS 40.0%
!!! CAGATCTTTTGTTGTTGCAG+TGG + chr4.2:38544241-38544260 MS.gene003879:intron 40.0%
AACAAACGAGGTAAGTAGGG+GGG - chr4.2:38545423-38545442 None:intergenic 45.0%
AACGGCGATACAGTAAGAGA+TGG + chr4.2:38544287-38544306 MS.gene003879:CDS 45.0%
AAGACGGAACTGCTATTGGA+CGG + chr4.2:38544588-38544607 MS.gene003879:CDS 45.0%
ACAAGCGCGAAAAGATTGTG+AGG + chr4.2:38544648-38544667 MS.gene003879:CDS 45.0%
AGCATAATGTGGGTCTCTCA+AGG + chr4.2:38545565-38545584 MS.gene003879:CDS 45.0%
AGGAAAGACGGAACTGCTAT+TGG + chr4.2:38544584-38544603 MS.gene003879:CDS 45.0%
AGTAGACAGTGTGAAGGAGA+TGG + chr4.2:38545602-38545621 MS.gene003879:CDS 45.0%
CTCTCACGATCAAGGAAAGA+CGG + chr4.2:38544572-38544591 MS.gene003879:CDS 45.0%
GCAGGGCAATGATTATGATG+AGG + chr4.2:38544696-38544715 MS.gene003879:CDS 45.0%
GCGAAAAGATTGTGAGGCAA+AGG + chr4.2:38544654-38544673 MS.gene003879:CDS 45.0%
GCGTATAGTAGACAGTGTGA+AGG + chr4.2:38545596-38545615 MS.gene003879:CDS 45.0%
GCGTATGATGAATCCAACCT+CGG - chr4.2:38544543-38544562 None:intergenic 45.0%
GTGACTCAAGATTCTTCTGG+AGG + chr4.2:38544398-38544417 MS.gene003879:CDS 45.0%
TAAGCAAGCTCTCACGATCA+AGG + chr4.2:38544564-38544583 MS.gene003879:CDS 45.0%
TATGCTACCAGCTACAACCA+TGG - chr4.2:38544315-38544334 None:intergenic 45.0%
TCGAACTCTTGACCCACATA+AGG - chr4.2:38544479-38544498 None:intergenic 45.0%
! ACAATCTTTTCGCGCTTGTC+AGG - chr4.2:38544647-38544666 None:intergenic 45.0%
! GGCTCTTGTTTGCAACAAAG+AGG + chr4.2:38544610-38544629 MS.gene003879:CDS 45.0%
! TACAGTAAGAGATGGTGCCA+TGG + chr4.2:38544295-38544314 MS.gene003879:CDS 45.0%
!! ACATGCAGAAAGTGCCGTAA+AGG - chr4.2:38545344-38545363 None:intergenic 45.0%
!! AGAAACAAGGGTTGGTTGCA+GGG + chr4.2:38544679-38544698 MS.gene003879:CDS 45.0%
AGACGGAACTGCTATTGGAC+GGG + chr4.2:38544589-38544608 MS.gene003879:CDS 50.0%
CAAAGGGCAGAAACAAGGGT+TGG + chr4.2:38544671-38544690 MS.gene003879:CDS 50.0%
CACACACATCCCTTGAATCC+TGG + chr4.2:38544764-38544783 MS.gene003879:CDS 50.0%
CCAACTGCTGAGATAGTTCG+CGG - chr4.2:38545479-38545498 None:intergenic 50.0%
CTCTCGTGGAAAGGATAAGG+TGG - chr4.2:38545301-38545320 None:intergenic 50.0%
GAGGCAAAGGGCAGAAACAA+GGG + chr4.2:38544667-38544686 MS.gene003879:CDS 50.0%
TGAGGCAAAGGGCAGAAACA+AGG + chr4.2:38544666-38544685 MS.gene003879:CDS 50.0%
TGTGGGTCAAGAGTTCGAGT+CGG + chr4.2:38544481-38544500 MS.gene003879:CDS 50.0%
TTACAATGCATACGCAGCCG+AGG + chr4.2:38544523-38544542 MS.gene003879:CDS 50.0%
! TCTGCTGAGGAGCCTTATGT+GGG + chr4.2:38544464-38544483 MS.gene003879:CDS 50.0%
! TTCTGCTGAGGAGCCTTATG+TGG + chr4.2:38544463-38544482 MS.gene003879:CDS 50.0%
!! CAGAAACAAGGGTTGGTTGC+AGG + chr4.2:38544678-38544697 MS.gene003879:CDS 50.0%
AATGCATACGCAGCCGAGGT+TGG + chr4.2:38544527-38544546 MS.gene003879:CDS 55.0%
ACTACCAGACGCTTCTGCTG+AGG + chr4.2:38544451-38544470 MS.gene003879:CDS 55.0%
CCGCGAACTATCTCAGCAGT+TGG + chr4.2:38545476-38545495 MS.gene003879:CDS 55.0%
GGTAGTGTGGGAACTGCAGT+GGG - chr4.2:38544437-38544456 None:intergenic 55.0%
! TGGTAGTGTGGGAACTGCAG+TGG - chr4.2:38544438-38544457 None:intergenic 55.0%
!! AGCAGAAGCGTCTGGTAGTG+TGG - chr4.2:38544450-38544469 None:intergenic 55.0%
!! GATGGTGCCATGGTTGTAGC+TGG + chr4.2:38544305-38544324 MS.gene003879:CDS 55.0%
!! GCAGAAGCGTCTGGTAGTGT+GGG - chr4.2:38544449-38544468 None:intergenic 55.0%
!! GGCTCCTCAGCAGAAGCGTC+TGG - chr4.2:38544458-38544477 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 38544158 38545656 38544158 ID=MS.gene003879
chr4.2 mRNA 38544158 38545656 38544158 ID=MS.gene003879.t1;Parent=MS.gene003879
chr4.2 exon 38544158 38544176 38544158 ID=MS.gene003879.t1.exon1;Parent=MS.gene003879.t1
chr4.2 CDS 38544158 38544176 38544158 ID=cds.MS.gene003879.t1;Parent=MS.gene003879.t1
chr4.2 exon 38544261 38544820 38544261 ID=MS.gene003879.t1.exon2;Parent=MS.gene003879.t1
chr4.2 CDS 38544261 38544820 38544261 ID=cds.MS.gene003879.t1;Parent=MS.gene003879.t1
chr4.2 exon 38545453 38545656 38545453 ID=MS.gene003879.t1.exon3;Parent=MS.gene003879.t1
chr4.2 CDS 38545453 38545656 38545453 ID=cds.MS.gene003879.t1;Parent=MS.gene003879.t1
Gene Sequence

>MS.gene003879

ATGTATCTGGGCTTCTTAGGTTATCGATCAACTTTGTAGACTGTTCTGTAGAATATATCACCTGAACACTGAAAATCTTATAGCAGATCTTTTGTTGTTGCAGTGGAGTTTGAGATTGATGACTCTGTTAACGGCGATACAGTAAGAGATGGTGCCATGGTTGTAGCTGGTAGCATACCTGATGAATACATGGAAGAAGAAAGTTCTGAACCATCTTACAAACAAGACCAAGATGATAACGTGACTCAAGATTCTTCTGGAGGAGTGTTAACAATACCCACTGCAGTTCCCACACTACCAGACGCTTCTGCTGAGGAGCCTTATGTGGGTCAAGAGTTCGAGTCGGAAGCAGCAGCGCATGCATTTTACAATGCATACGCAGCCGAGGTTGGATTCATCATACGCGTAAGCAAGCTCTCACGATCAAGGAAAGACGGAACTGCTATTGGACGGGCTCTTGTTTGCAACAAAGAGGGTTACAGAATGCCTGACAAGCGCGAAAAGATTGTGAGGCAAAGGGCAGAAACAAGGGTTGGTTGCAGGGCAATGATTATGATGAGGAAAATTAATTCTGGTAAATGGGTTATTACGAAGTTTGTAAAGGAGCACACACATCCCTTGAATCCTGGAAGTAGTAGAAAGGAGATGTTTGAAATTTATCCGGTCAGTTCCTATGCTTTTTACTACCGAAGAATTGTATAAATTATAATAGTTTATAAATTATAATAGTTTATTGATTCTCGTATATATTGTAATGGTTTATTCCTGTCATTGTTACTTTATGCTTGATAGATTGAGAATGAATGGTATTAGTTTAAGGATTAGATAATTTAAGACCATTTCAGAATGAAGTTTTTAGGATAATATTGGTTCTTTCACACATTTTAGCAAAATTTTGAATGAAGATTCTGTCTTTTTTCACCTTATATAATACTTCATCCATTCATTTTTAATTTTCATTTTTGTAAGAAACAAATCTTATTTATTTGTCGTTTTCCAAGTTCAATGCAGAATTAACTATTGTTTTGTCGATAATACTCTTAAGTATTTATCGCAGAGAGATAAATAGGTAGAATGAGATGATAAGTAGTTAAAGGTATTATAGGAAAATAGATCATTCTTGTTATGTAGTTATATTGGCCACCTTATCCTTTCCACGAGAGAAATTGCAACTTAGAAATTACCTTTACGGCACTTTCTGCATGTGAAGAACTTGCGTGATTTATAATTATTCTATTCTGTTCTCTTTTCAGTTTATTTTTCCCCCCTACTTACCTCGTTTGTTTCTATGTCAGTCTCAGAACGAACATGATAAAATCCGCGAACTATCTCAGCAGTTGGCAATAGAGAAAAAGCGATCTGTGACATATAAAAGACAACTTGAAGTGATATTTGATTATATCGAGGAGCATAATGTGGGTCTCTCAAGGAAAATGCAGCGTATAGTAGACAGTGTGAAGGAGATGGAACCTAAAGAAGAAGAAGAACATAATCATTGA
Protein sequence

>MS.gene003879.t1

MYLGFLVEFEIDDSVNGDTVRDGAMVVAGSIPDEYMEEESSEPSYKQDQDDNVTQDSSGGVLTIPTAVPTLPDASAEEPYVGQEFESEAAAHAFYNAYAAEVGFIIRVSKLSRSRKDGTAIGRALVCNKEGYRMPDKREKIVRQRAETRVGCRAMIMMRKINSGKWVITKFVKEHTHPLNPGSSRKEMFEIYPSQNEHDKIRELSQQLAIEKKRSVTYKRQLEVIFDYIEEHNVGLSRKMQRIVDSVKEMEPKEEEEHNH