Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00389.t1 | XP_003594872.2 | 97.8 | 464 | 10 | 0 | 30 | 493 | 17 | 480 | 1.50E-266 | 928.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00389.t1 | Q84JF5 | 73.0 | 445 | 117 | 3 | 51 | 493 | 40 | 483 | 2.8e-194 | 679.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00389.t1 | G7INE0 | 97.8 | 464 | 10 | 0 | 30 | 493 | 17 | 480 | 1.1e-266 | 928.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene00389.t1 | TR | SET |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00389.t1 | MTR_2g035660 | 97.845 | 464 | 10 | 0 | 30 | 493 | 17 | 480 | 0.0 | 950 |
MS.gene00389.t1 | MTR_4g082305 | 24.883 | 426 | 244 | 18 | 108 | 492 | 80 | 470 | 8.95e-15 | 77.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00389.t1 | AT4G20130 | 71.648 | 455 | 126 | 3 | 41 | 493 | 30 | 483 | 0.0 | 687 |
MS.gene00389.t1 | AT4G20130 | 73.425 | 365 | 96 | 1 | 129 | 493 | 1 | 364 | 0.0 | 580 |
MS.gene00389.t1 | AT4G20130 | 73.425 | 365 | 96 | 1 | 129 | 493 | 1 | 364 | 0.0 | 580 |
Find 106 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGAATTACCTAACAGTTTC+TGG | 0.135526 | 2.2:+51060998 | None:intergenic |
GAGCTACATTTAGATCTTTC+TGG | 0.147647 | 2.2:-51068399 | MS.gene00389:CDS |
CCATGGTAATTTCTTGCTTA+TGG | 0.197935 | 2.2:+51064360 | None:intergenic |
GAAGCTGTTTCATCATCTTT+AGG | 0.257907 | 2.2:+51065290 | None:intergenic |
TTGTCAGTCTTCAACATATC+TGG | 0.279113 | 2.2:-51061330 | MS.gene00389:CDS |
GTATATCTAGGAGGAACTTT+TGG | 0.297229 | 2.2:-51063831 | MS.gene00389:intron |
CAGTTTCTGGTCTTGCTTAG+AGG | 0.304127 | 2.2:+51061011 | None:intergenic |
GTCCGAAGTATGCGAGCTTA+TGG | 0.311545 | 2.2:-51064590 | MS.gene00389:CDS |
AAGGAAGGGCCAAATGGTTT+TGG | 0.316532 | 2.2:-51064557 | MS.gene00389:CDS |
AACAACGAGCGTTAGAATTC+TGG | 0.322289 | 2.2:-51063766 | MS.gene00389:CDS |
TGACCAAGGGGAATTATATC+AGG | 0.327820 | 2.2:+51064328 | None:intergenic |
TTGAACCTTCTTCTTAATAG+AGG | 0.330392 | 2.2:-51068372 | MS.gene00389:CDS |
TTCAAGAGTTCTCGTAGCTT+CGG | 0.331867 | 2.2:+51060483 | None:intergenic |
TTCCTTTCTTCACTTGGGAT+TGG | 0.339331 | 2.2:+51061090 | None:intergenic |
TGAACTTGGGCAGGTTATAA+TGG | 0.358603 | 2.2:-51064407 | MS.gene00389:intron |
GCAGCCTTCCTTTCTTCACT+TGG | 0.361561 | 2.2:+51061084 | None:intergenic |
TAGAATTCTGGGAGAAGAAC+TGG | 0.366779 | 2.2:-51063754 | MS.gene00389:CDS |
TGGCGACCCACTTACTCGTT+TGG | 0.373384 | 2.2:-51065386 | MS.gene00389:CDS |
TTGACTGCAAAGACAACTTT+TGG | 0.380436 | 2.2:-51064041 | MS.gene00389:CDS |
AATCTTTGTGGCAGACAGAT+TGG | 0.384792 | 2.2:-51064098 | MS.gene00389:intron |
GTTTCAACAGAAGCTTTAAC+AGG | 0.387453 | 2.2:+51065338 | None:intergenic |
AGGCAATGCACGAATCCATT+TGG | 0.393759 | 2.2:-51061361 | MS.gene00389:CDS |
ACTTAAATATGCAGAATCCT+TGG | 0.397663 | 2.2:-51061401 | MS.gene00389:intron |
AATCCTATCTTGTAGAAATC+AGG | 0.398262 | 2.2:+51064614 | None:intergenic |
GATCCTGATTTCTACAAGAT+AGG | 0.398743 | 2.2:-51064617 | MS.gene00389:CDS |
CCGTTACGATAATACTCTTC+AGG | 0.400533 | 2.2:+51061303 | None:intergenic |
CTTTCTTCACTTGGGATTGG+AGG | 0.404062 | 2.2:+51061093 | None:intergenic |
CAGAAAATTGCTAATGGAAA+AGG | 0.406976 | 2.2:-51060293 | MS.gene00389:CDS |
AAGCAAGACCAGAAACTGTT+AGG | 0.413582 | 2.2:-51061006 | MS.gene00389:intron |
ATCTTTGTGGCAGACAGATT+GGG | 0.429709 | 2.2:-51064097 | MS.gene00389:intron |
GAGGCTGAAACAAGGGAAAT+GGG | 0.430134 | 2.2:+51065312 | None:intergenic |
GAGTTGATAATATCAAATAT+TGG | 0.430427 | 2.2:+51064304 | None:intergenic |
CTTAAATATGCAGAATCCTT+GGG | 0.431199 | 2.2:-51061400 | MS.gene00389:intron |
TCAAGAGTTCTCGTAGCTTC+GGG | 0.432228 | 2.2:+51060484 | None:intergenic |
ATTGCACAGAAAATTGCTAA+TGG | 0.432867 | 2.2:-51060299 | MS.gene00389:CDS |
CTTGAGGTTCTTATAAATGC+TGG | 0.434356 | 2.2:-51063258 | MS.gene00389:CDS |
GGAGGCTGAAACAAGGGAAA+TGG | 0.441003 | 2.2:+51065311 | None:intergenic |
CAGCCTTCCTTTCTTCACTT+GGG | 0.444382 | 2.2:+51061085 | None:intergenic |
GCTAGTACTTTCATCTGCAC+TGG | 0.452982 | 2.2:+51063996 | None:intergenic |
TTCCCTGATATAATTCCCCT+TGG | 0.459258 | 2.2:-51064331 | MS.gene00389:CDS |
TTGTAGAAATCAGGATCTAC+AGG | 0.465598 | 2.2:+51064623 | None:intergenic |
TTTGGATTTGGCTTATGAAA+GGG | 0.467054 | 2.2:-51068425 | None:intergenic |
CTCCATAAGCTCGCATACTT+CGG | 0.475886 | 2.2:+51064588 | None:intergenic |
ACTGCCCACATGAACCTTTG+AGG | 0.479039 | 2.2:+51063595 | None:intergenic |
GTTTGCGCCATGGTTATTTG+TGG | 0.479861 | 2.2:-51065406 | MS.gene00389:CDS |
ACAACGAGCGTTAGAATTCT+GGG | 0.481989 | 2.2:-51063765 | MS.gene00389:CDS |
CTTTGGATTTGGCTTATGAA+AGG | 0.482076 | 2.2:-51068426 | None:intergenic |
GAACAAAGCTTACCAGCATA+AGG | 0.490671 | 2.2:+51063496 | None:intergenic |
AACAATTTGGCTCAAACGAA+TGG | 0.492685 | 2.2:+51063310 | None:intergenic |
CTGACAAGAAAGAATCCAAA+TGG | 0.492742 | 2.2:+51061346 | None:intergenic |
GCATATACACCAAAACCATT+TGG | 0.494211 | 2.2:+51064548 | None:intergenic |
TCTCATTGTAGAAGCAAGAT+CGG | 0.504225 | 2.2:+51063796 | None:intergenic |
CAGTCCCTCTATTAAGAAGA+AGG | 0.504320 | 2.2:+51068367 | None:intergenic |
TGGGATGTGATCAAATTCTC+AGG | 0.506817 | 2.2:-51061381 | MS.gene00389:CDS |
ATCAAATATTGGATGACCAA+GGG | 0.508658 | 2.2:+51064315 | None:intergenic |
CTCCAATCCCAAGTGAAGAA+AGG | 0.512257 | 2.2:-51061092 | MS.gene00389:CDS |
TCTTTAGGAGGCTGAAACAA+GGG | 0.516914 | 2.2:+51065305 | None:intergenic |
GGAAAAGGTTATCCTAGCAT+TGG | 0.517530 | 2.2:-51060278 | MS.gene00389:CDS |
CAGTTCAAAGGTTTGCGCCA+TGG | 0.522935 | 2.2:-51065416 | MS.gene00389:CDS |
GTTAATCTTGTTCAGCATAG+TGG | 0.526606 | 2.2:-51063652 | MS.gene00389:intron |
TGCTGGACAACGGATAAGAA+AGG | 0.527485 | 2.2:-51063241 | MS.gene00389:CDS |
CTCATTGTAGAAGCAAGATC+GGG | 0.528009 | 2.2:+51063797 | None:intergenic |
TGAACCTTCTTCTTAATAGA+GGG | 0.535150 | 2.2:-51068371 | MS.gene00389:CDS |
TTACTTTCTAAACAGTTCAA+AGG | 0.544119 | 2.2:-51065428 | MS.gene00389:intron |
CTTGATAGATCTCCAATGCT+AGG | 0.544253 | 2.2:+51060266 | None:intergenic |
TCGAACCTCTTCGCCGACCA+AGG | 0.545300 | 2.2:-51064514 | MS.gene00389:CDS |
AATATGCTGATTCCTTATGC+TGG | 0.547916 | 2.2:-51063508 | MS.gene00389:intron |
CAAAGGTTCATGTGGGCAGT+AGG | 0.553144 | 2.2:-51063592 | MS.gene00389:CDS |
GCAGAAGTTCTATCGAGCAC+TGG | 0.557263 | 2.2:-51061186 | MS.gene00389:intron |
CAGCACGAACATTGCCAACA+TGG | 0.557449 | 2.2:-51061131 | MS.gene00389:CDS |
GCTGTTTCATCATCTTTAGG+AGG | 0.562065 | 2.2:+51065293 | None:intergenic |
GCTGGACAACGGATAAGAAA+GGG | 0.563259 | 2.2:-51063240 | MS.gene00389:CDS |
AGATGATGAAACAGCTTCTG+AGG | 0.564802 | 2.2:-51065285 | MS.gene00389:intron |
CTCACCCTTGGTCGGCGAAG+AGG | 0.565363 | 2.2:+51064509 | None:intergenic |
GACATGTTAATGCAAAGATA+CGG | 0.568057 | 2.2:-51061840 | MS.gene00389:CDS |
CTAGTACTTTCATCTGCACT+GGG | 0.569363 | 2.2:+51063997 | None:intergenic |
TCCTGTCCTTAAAACGCCAA+TGG | 0.569618 | 2.2:+51063283 | None:intergenic |
TTTCTGGTCTTGCTTAGAGG+TGG | 0.573797 | 2.2:+51061014 | None:intergenic |
GTGATCCTCAAAGGTTCATG+TGG | 0.575415 | 2.2:-51063600 | MS.gene00389:CDS |
GAGAATTTGATCACATCCCA+AGG | 0.578387 | 2.2:+51061384 | None:intergenic |
GTCTTGCTCGTGATCCTCAA+AGG | 0.578672 | 2.2:-51063609 | MS.gene00389:CDS |
ATCTTTAGGAGGCTGAAACA+AGG | 0.580488 | 2.2:+51065304 | None:intergenic |
TATCAAATATTGGATGACCA+AGG | 0.581735 | 2.2:+51064314 | None:intergenic |
AGTCAAATGAAAACAAGAGA+AGG | 0.583863 | 2.2:+51064058 | None:intergenic |
AGGGACTGAGGGAAGCAAGT+TGG | 0.584147 | 2.2:-51068352 | MS.gene00389:CDS |
CTTCTTAATAGAGGGACTGA+GGG | 0.589182 | 2.2:-51068363 | MS.gene00389:CDS |
AATCCCAAGTGAAGAAAGGA+AGG | 0.592614 | 2.2:-51061088 | MS.gene00389:CDS |
CCTGAAGAGTATTATCGTAA+CGG | 0.595528 | 2.2:-51061303 | MS.gene00389:intron |
ATGGTTAGCATCAATTCAAG+AGG | 0.596700 | 2.2:+51064379 | None:intergenic |
TCTTCTTAATAGAGGGACTG+AGG | 0.600828 | 2.2:-51068364 | MS.gene00389:CDS |
CGAACCTCTTCGCCGACCAA+GGG | 0.606118 | 2.2:-51064513 | MS.gene00389:intron |
GACCAAGGGGAATTATATCA+GGG | 0.608421 | 2.2:+51064329 | None:intergenic |
TGAGGCTACTCACCCTTGGT+CGG | 0.610693 | 2.2:+51064501 | None:intergenic |
AGGCTGAAACAAGGGAAATG+GGG | 0.620587 | 2.2:+51065313 | None:intergenic |
TCAAATATTGGATGACCAAG+GGG | 0.620822 | 2.2:+51064316 | None:intergenic |
ACATTGCCAACATGGTCAGA+TGG | 0.621351 | 2.2:-51061123 | MS.gene00389:CDS |
AGAATTCTGGGAGAAGAACT+GGG | 0.626608 | 2.2:-51063753 | MS.gene00389:intron |
TTCTTATAAATGCTGGACAA+CGG | 0.630290 | 2.2:-51063251 | MS.gene00389:CDS |
ACATCTCCATCTGACCATGT+TGG | 0.640415 | 2.2:+51061117 | None:intergenic |
TACGATAATACTCTTCAGGA+AGG | 0.641879 | 2.2:+51061307 | None:intergenic |
ACGGATAAGAAAGGGAGATG+AGG | 0.666436 | 2.2:-51063232 | MS.gene00389:intron |
TAGCTTACTTCTAGCTACAG+AGG | 0.670222 | 2.2:-51063977 | MS.gene00389:intron |
TGATCCTCAAAGGTTCATGT+GGG | 0.670337 | 2.2:-51063599 | MS.gene00389:CDS |
CCATAAGCAAGAAATTACCA+TGG | 0.675291 | 2.2:-51064360 | MS.gene00389:CDS |
TATCAACTCAACAAATCCAG+AGG | 0.680162 | 2.2:-51064290 | MS.gene00389:intron |
TGGGTCGCCACAAATAACCA+TGG | 0.693090 | 2.2:+51065399 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 51060249 | 51068433 | 51060249 | ID=MS.gene00389 |
chr2.2 | mRNA | 51060249 | 51068433 | 51060249 | ID=MS.gene00389.t1;Parent=MS.gene00389 |
chr2.2 | exon | 51068344 | 51068433 | 51068344 | ID=MS.gene00389.t1.exon1;Parent=MS.gene00389.t1 |
chr2.2 | CDS | 51068344 | 51068433 | 51068344 | ID=cds.MS.gene00389.t1;Parent=MS.gene00389.t1 |
chr2.2 | exon | 51065286 | 51065435 | 51065286 | ID=MS.gene00389.t1.exon2;Parent=MS.gene00389.t1 |
chr2.2 | CDS | 51065286 | 51065435 | 51065286 | ID=cds.MS.gene00389.t1;Parent=MS.gene00389.t1 |
chr2.2 | exon | 51064514 | 51064651 | 51064514 | ID=MS.gene00389.t1.exon3;Parent=MS.gene00389.t1 |
chr2.2 | CDS | 51064514 | 51064651 | 51064514 | ID=cds.MS.gene00389.t1;Parent=MS.gene00389.t1 |
chr2.2 | exon | 51064291 | 51064416 | 51064291 | ID=MS.gene00389.t1.exon4;Parent=MS.gene00389.t1 |
chr2.2 | CDS | 51064291 | 51064416 | 51064291 | ID=cds.MS.gene00389.t1;Parent=MS.gene00389.t1 |
chr2.2 | exon | 51063978 | 51064106 | 51063978 | ID=MS.gene00389.t1.exon5;Parent=MS.gene00389.t1 |
chr2.2 | CDS | 51063978 | 51064106 | 51063978 | ID=cds.MS.gene00389.t1;Parent=MS.gene00389.t1 |
chr2.2 | exon | 51063754 | 51063843 | 51063754 | ID=MS.gene00389.t1.exon6;Parent=MS.gene00389.t1 |
chr2.2 | CDS | 51063754 | 51063843 | 51063754 | ID=cds.MS.gene00389.t1;Parent=MS.gene00389.t1 |
chr2.2 | exon | 51063509 | 51063659 | 51063509 | ID=MS.gene00389.t1.exon7;Parent=MS.gene00389.t1 |
chr2.2 | CDS | 51063509 | 51063659 | 51063509 | ID=cds.MS.gene00389.t1;Parent=MS.gene00389.t1 |
chr2.2 | exon | 51063233 | 51063342 | 51063233 | ID=MS.gene00389.t1.exon8;Parent=MS.gene00389.t1 |
chr2.2 | CDS | 51063233 | 51063342 | 51063233 | ID=cds.MS.gene00389.t1;Parent=MS.gene00389.t1 |
chr2.2 | exon | 51061824 | 51061895 | 51061824 | ID=MS.gene00389.t1.exon9;Parent=MS.gene00389.t1 |
chr2.2 | CDS | 51061824 | 51061895 | 51061824 | ID=cds.MS.gene00389.t1;Parent=MS.gene00389.t1 |
chr2.2 | exon | 51061304 | 51061409 | 51061304 | ID=MS.gene00389.t1.exon10;Parent=MS.gene00389.t1 |
chr2.2 | CDS | 51061304 | 51061409 | 51061304 | ID=cds.MS.gene00389.t1;Parent=MS.gene00389.t1 |
chr2.2 | exon | 51061007 | 51061204 | 51061007 | ID=MS.gene00389.t1.exon11;Parent=MS.gene00389.t1 |
chr2.2 | CDS | 51061007 | 51061204 | 51061007 | ID=cds.MS.gene00389.t1;Parent=MS.gene00389.t1 |
chr2.2 | exon | 51060472 | 51060514 | 51060472 | ID=MS.gene00389.t1.exon12;Parent=MS.gene00389.t1 |
chr2.2 | CDS | 51060472 | 51060514 | 51060472 | ID=cds.MS.gene00389.t1;Parent=MS.gene00389.t1 |
chr2.2 | exon | 51060249 | 51060327 | 51060249 | ID=MS.gene00389.t1.exon13;Parent=MS.gene00389.t1 |
chr2.2 | CDS | 51060249 | 51060327 | 51060249 | ID=cds.MS.gene00389.t1;Parent=MS.gene00389.t1 |
Gene Sequence |
Protein sequence |