AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003906

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003906.t1 MTR_4g066460 81.620 321 28 6 1 308 1 303 1.14e-175 489
MS.gene003906.t1 MTR_4g066380 82.390 318 28 4 1 308 1 300 5.04e-175 487
MS.gene003906.t1 MTR_4g067010 78.438 320 32 6 1 308 1 295 7.28e-172 479
MS.gene003906.t1 MTR_6g047570 63.720 328 81 10 1 308 1 310 3.03e-128 369
MS.gene003906.t1 MTR_0011s0260 59.026 349 87 7 1 308 1 334 1.70e-117 342
MS.gene003906.t1 MTR_0011s0210 58.739 349 88 7 1 308 1 334 8.93e-116 338
MS.gene003906.t1 MTR_0250s0040 55.219 297 64 7 23 308 1 239 2.61e-96 285
MS.gene003906.t1 MTR_0246s0020 50.418 359 121 8 1 308 1 353 3.90e-90 274
MS.gene003906.t1 MTR_0246s0020 50.418 359 121 8 1 308 1 353 6.12e-90 273
MS.gene003906.t1 MTR_6g047550 57.317 246 63 8 1 222 1 228 5.98e-74 228
MS.gene003906.t1 MTR_4g098035 45.161 341 129 11 1 308 1 316 8.96e-73 228
MS.gene003906.t1 MTR_0246s0050 43.887 319 122 10 22 308 2 295 3.59e-65 207
MS.gene003906.t1 MTR_5g014520 43.648 307 140 10 17 308 20 308 9.28e-56 184
MS.gene003906.t1 MTR_5g014560 46.377 207 83 7 117 308 89 282 4.95e-42 147
MS.gene003906.t1 MTR_5g014600 34.954 329 159 9 13 308 7 313 1.46e-37 136
MS.gene003906.t1 MTR_4g097920 36.626 243 122 6 93 308 52 289 7.35e-36 131
MS.gene003906.t1 MTR_4g097920 36.626 243 122 6 93 308 67 304 1.13e-35 131
MS.gene003906.t1 MTR_8g009020 38.009 221 112 4 105 308 89 301 4.13e-35 130
MS.gene003906.t1 MTR_4g097940 35.802 243 124 6 93 308 67 304 6.84e-34 126
MS.gene003906.t1 MTR_2g010450 45.342 161 75 2 159 308 171 329 9.88e-34 127
MS.gene003906.t1 MTR_4g092700 41.304 184 86 3 141 308 132 309 1.26e-33 126
MS.gene003906.t1 MTR_4g009540 41.209 182 86 6 148 308 128 309 3.26e-33 124
MS.gene003906.t1 MTR_2g104490 35.417 240 135 5 78 308 58 286 6.48e-33 124
MS.gene003906.t1 MTR_2g104490 36.100 241 132 7 78 308 58 286 7.04e-33 123
MS.gene003906.t1 MTR_4g009540 41.209 182 86 6 148 308 128 309 7.22e-33 124
MS.gene003906.t1 MTR_8g069740 42.690 171 82 5 153 308 96 265 8.30e-33 122
MS.gene003906.t1 MTR_4g097950 47.531 162 68 4 164 308 67 228 1.15e-32 121
MS.gene003906.t1 MTR_5g014640 32.422 256 127 6 81 308 65 302 1.93e-32 122
MS.gene003906.t1 MTR_4g009110 36.638 232 111 7 98 308 112 328 2.69e-32 122
MS.gene003906.t1 MTR_2g104550 37.037 216 117 4 105 308 82 290 2.69e-32 122
MS.gene003906.t1 MTR_8g009010 36.098 205 99 3 105 308 77 250 7.41e-30 115
MS.gene003906.t1 MTR_2g104650 42.857 168 80 5 156 308 81 247 1.03e-28 111
MS.gene003906.t1 MTR_7g080780 39.247 186 105 4 126 308 127 307 1.29e-28 112
MS.gene003906.t1 MTR_7g080780 39.247 186 105 4 126 308 114 294 1.32e-28 112
MS.gene003906.t1 MTR_2g104560 38.323 167 91 5 153 308 38 203 1.61e-26 104
MS.gene003906.t1 MTR_2g104530 37.805 164 92 4 153 308 91 252 5.78e-24 99.0
MS.gene003906.t1 MTR_2g104500 31.222 221 144 5 95 308 31 250 4.16e-21 91.3
MS.gene003906.t1 MTR_2g104590 36.145 166 72 6 156 308 58 202 4.55e-20 87.4
MS.gene003906.t1 MTR_5g014550 44.444 126 52 3 197 308 54 175 8.38e-20 85.9
MS.gene003906.t1 MTR_4g009510 35.664 143 85 5 169 308 45 183 9.62e-17 77.8
MS.gene003906.t1 MTR_8g067280 29.940 167 86 2 158 293 443 609 1.30e-15 77.8
MS.gene003906.t1 MTR_7g451650 36.000 125 68 2 190 308 57 175 1.89e-15 73.6
MS.gene003906.t1 MTR_7g451650 36.000 125 68 2 190 308 57 175 1.95e-15 73.9
MS.gene003906.t1 MTR_1g072320 31.944 144 76 3 167 290 470 611 5.12e-15 75.9
MS.gene003906.t1 MTR_4g009420 37.815 119 66 2 190 308 65 175 1.22e-14 71.6
MS.gene003906.t1 MTR_4g009420 37.815 119 66 2 190 308 65 175 2.02e-14 71.2
MS.gene003906.t1 MTR_8g024770 29.333 150 77 4 141 266 248 392 3.79e-14 72.8
MS.gene003906.t1 MTR_8g024790 29.630 162 99 4 139 286 263 423 7.25e-14 72.0
MS.gene003906.t1 MTR_5g030430 30.539 167 91 4 152 293 474 640 9.61e-14 72.0
MS.gene003906.t1 MTR_7g050350 34.454 119 66 2 196 308 1 113 3.06e-13 66.2
MS.gene003906.t1 MTR_7g451650 34.454 119 66 2 196 308 1 113 3.06e-13 66.2
MS.gene003906.t1 MTR_7g117670 53.226 62 25 1 163 220 394 455 7.74e-13 69.3
MS.gene003906.t1 MTR_3g498695 29.677 155 89 2 169 303 300 454 1.14e-12 68.6
MS.gene003906.t1 MTR_3g498695 29.677 155 89 2 169 303 300 454 1.25e-12 68.6
MS.gene003906.t1 MTR_3g030700 30.968 155 92 3 169 308 198 352 2.10e-12 67.4
MS.gene003906.t1 MTR_7g096350 36.082 97 52 1 134 220 312 408 3.10e-12 67.4
MS.gene003906.t1 MTR_8g027495 46.479 71 38 0 167 237 458 528 3.24e-12 67.4
MS.gene003906.t1 MTR_8g064700 26.036 169 102 4 157 306 234 398 5.53e-12 66.2
MS.gene003906.t1 MTR_3g104100 27.742 155 92 3 169 303 197 351 3.51e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003906.t1 AT4G37850 43.889 180 80 7 147 308 128 304 3.34e-33 125
MS.gene003906.t1 AT4G37850 43.889 180 80 7 147 308 128 304 3.34e-33 125
MS.gene003906.t1 AT2G22750 33.631 336 158 14 8 308 4 309 2.12e-30 117
MS.gene003906.t1 AT2G22750 33.631 336 158 14 8 308 4 309 2.35e-30 117
MS.gene003906.t1 AT2G22750 33.131 329 156 13 15 308 6 305 6.45e-30 116
MS.gene003906.t1 AT2G22760 38.554 166 89 3 156 308 108 273 1.29e-29 114
MS.gene003906.t1 AT2G22760 38.554 166 89 3 156 308 108 273 1.96e-29 114
MS.gene003906.t1 AT2G22750 37.788 217 97 6 125 308 70 281 2.22e-29 114
MS.gene003906.t1 AT2G22750 37.788 217 97 6 125 308 70 281 2.24e-29 114
MS.gene003906.t1 AT2G22770 38.095 168 79 2 166 308 131 298 3.12e-25 103
MS.gene003906.t1 AT4G17880 33.175 211 109 8 110 291 350 557 1.31e-17 83.6
MS.gene003906.t1 AT5G46760 35.329 167 79 7 152 291 396 560 2.37e-17 82.8
MS.gene003906.t1 AT1G32640 32.075 159 81 3 159 293 434 589 8.40e-16 78.2
MS.gene003906.t1 AT2G46510 37.931 116 54 3 159 264 377 484 8.48e-15 75.1
MS.gene003906.t1 AT1G01260 25.974 231 135 5 91 306 351 560 1.81e-13 71.2
MS.gene003906.t1 AT1G01260 25.974 231 135 5 91 306 351 560 1.81e-13 71.2
MS.gene003906.t1 AT1G01260 25.974 231 135 5 91 306 351 560 1.81e-13 71.2
MS.gene003906.t1 AT4G09820 29.193 161 97 3 118 278 321 464 4.48e-13 69.7
MS.gene003906.t1 AT4G16430 46.575 73 35 1 152 220 301 373 1.01e-12 68.6
MS.gene003906.t1 AT5G46830 54.839 62 24 1 163 220 335 396 3.50e-12 67.0
MS.gene003906.t1 AT5G41315 29.348 184 90 7 158 305 437 616 7.20e-12 66.2
MS.gene003906.t1 AT5G41315 29.348 184 90 7 158 305 440 619 7.76e-12 66.2
MS.gene003906.t1 AT5G41315 29.348 184 90 7 158 305 432 611 8.16e-12 66.2
MS.gene003906.t1 AT3G26744 29.487 156 90 2 168 303 308 463 7.37e-11 63.2
MS.gene003906.t1 AT3G26744 29.487 156 90 2 168 303 308 463 9.06e-11 62.8
MS.gene003906.t1 AT3G26744 29.487 156 90 2 168 303 308 463 9.06e-11 62.8
MS.gene003906.t1 AT3G26744 29.487 156 90 2 168 303 308 463 9.06e-11 62.8

Find 47 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGTTCCTAACCTTAAAA+AGG 0.267726 4.2:+39261598 MS.gene003906:CDS
CAGCAGCTGGTTATCTGATT+TGG 0.268145 4.2:+39260744 MS.gene003906:CDS
TCAAGAACAAAACAAACAAT+TGG 0.334442 4.2:+39261196 MS.gene003906:CDS
CAAGTGGAAGCAAGAGTGTT+AGG 0.334987 4.2:+39262413 MS.gene003906:CDS
GGGGCTTCTAGTTAAAATTA+TGG 0.343764 4.2:+39262475 MS.gene003906:CDS
GATGGTGATGGAGAAATATT+TGG 0.350142 4.2:-39261302 None:intergenic
CTGCAAGAGCAATGAAGCTT+TGG 0.357341 4.2:-39261574 None:intergenic
ATCAGTGTCTCCAACCGAAT+TGG 0.364748 4.2:+39261409 MS.gene003906:CDS
CAAGAACAAAACAAACAATT+GGG 0.390107 4.2:+39261197 MS.gene003906:CDS
CATCTGCATCAAGAAAATTA+AGG 0.394973 4.2:-39261136 None:intergenic
TTGATGATACTTTCATTGCT+TGG 0.395476 4.2:-39260720 None:intergenic
ATCGCTGCATATGCATGGTT+TGG 0.407010 4.2:-39262336 None:intergenic
ACTCTTGCTTCCACTTGAAA+TGG 0.409697 4.2:-39262407 None:intergenic
AGAAACCTCAAAAGGGTCAT+TGG 0.411401 4.2:+39261451 MS.gene003906:CDS
AATAACAGTGTCTTACCCTT+TGG 0.416567 4.2:+39262530 MS.gene003906:CDS
GCCCCTTGTGCTCCTTGCAT+TGG 0.417499 4.2:-39262457 None:intergenic
CACTCAACAGAAACCTCAAA+AGG 0.444007 4.2:+39261443 MS.gene003906:CDS
TAGGAAAACAAGTGTTGATT+CGG 0.449123 4.2:+39262432 MS.gene003906:CDS
TGCAAGAGCAATGAAGCTTT+GGG 0.460124 4.2:-39261573 None:intergenic
AAAGAGGAGTTAGATGGTGA+TGG 0.464747 4.2:-39261314 None:intergenic
GATAACATTGAATGTGTTGT+TGG 0.466089 4.2:+39262380 MS.gene003906:CDS
TGACTTGCTGAGATCATTTG+TGG 0.473303 4.2:-39261228 None:intergenic
AACTGAAAAGAGGAGTTAGA+TGG 0.496291 4.2:-39261320 None:intergenic
GCTGAGATCATTTGTGGAAG+TGG 0.497595 4.2:-39261222 None:intergenic
AGCAAAAGGCCTCGTGCTCA+TGG 0.502148 4.2:+39261506 MS.gene003906:CDS
GGTAGCTACCTGAGCAATGA+TGG 0.511294 4.2:-39262573 None:intergenic
AAGGCCTCGTGCTCATGGTA+AGG 0.535577 4.2:+39261511 MS.gene003906:CDS
TTCTTGATGCAGATGTGGGA+GGG 0.544131 4.2:+39261144 MS.gene003906:CDS
CGACATTACCATCATTGCTC+AGG 0.544333 4.2:+39262565 MS.gene003906:CDS
GTTGATTCGGTTCCAATGCA+AGG 0.545125 4.2:+39262445 MS.gene003906:CDS
GTTCCAATGCAAGGAGCACA+AGG 0.563766 4.2:+39262454 MS.gene003906:CDS
TCTTCATCGCTGCATATGCA+TGG 0.570607 4.2:-39262341 None:intergenic
AAGTATCATCAATCAGCAGC+TGG 0.573007 4.2:+39260731 MS.gene003906:CDS
TTTCTTGATGCAGATGTGGG+AGG 0.583981 4.2:+39261143 MS.gene003906:CDS
TGGTATTTGAAACTGAAAAG+AGG 0.585974 4.2:-39261330 None:intergenic
ACTCAACAGAAACCTCAAAA+GGG 0.587077 4.2:+39261444 MS.gene003906:CDS
GTCGAGTGTAGAATCTCCAA+AGG 0.590011 4.2:-39262546 None:intergenic
TCCAATGCAAGGAGCACAAG+GGG 0.595381 4.2:+39262456 MS.gene003906:CDS
TGTTGGTTCACCATTTCAAG+TGG 0.611743 4.2:+39262397 MS.gene003906:CDS
TCATGGTAAGGATCACATCA+TGG 0.611981 4.2:+39261523 MS.gene003906:CDS
TCGAGTGTAGAATCTCCAAA+GGG 0.615421 4.2:-39262545 None:intergenic
CTGCATATGCATGGTTTGGT+CGG 0.617639 4.2:-39262332 None:intergenic
CGAATACAATATATTTGCTG+AGG 0.624364 4.2:+39261106 MS.gene003906:CDS
TGAAGATTCGTCATCATGTG+AGG 0.642706 4.2:+39262358 MS.gene003906:CDS
TTCCAATGCAAGGAGCACAA+GGG 0.644827 4.2:+39262455 MS.gene003906:CDS
AAGAACAAAACAAACAATTG+GGG 0.650416 4.2:+39261198 MS.gene003906:CDS
TGATCCTTACCATGAGCACG+AGG 0.705697 4.2:-39261515 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTATATTTTGAAATATTT+AGG + chr4.2:39261784-39261803 MS.gene003906:intron 10.0%
!!! TTTATTATTTTTCTTTTAGA+TGG + chr4.2:39262229-39262248 MS.gene003906:intron 10.0%
!! AAAAAAAAATCTTGAAGACT+TGG - chr4.2:39260978-39260997 None:intergenic 20.0%
!! ATACTTTGATCATATGTAAA+GGG - chr4.2:39261843-39261862 None:intergenic 20.0%
!! ATTTGACATATAATTATGAG+CGG + chr4.2:39262128-39262147 MS.gene003906:intron 20.0%
!! CCTTAAATAAGAATAAACAT+AGG + chr4.2:39260933-39260952 MS.gene003906:intron 20.0%
!! TATACATGACATATATGAAT+TGG - chr4.2:39261713-39261732 None:intergenic 20.0%
!! TGTATATTGTTTGTGTATAT+AGG - chr4.2:39262062-39262081 None:intergenic 20.0%
!!! CCTATGTTTATTCTTATTTA+AGG - chr4.2:39260936-39260955 None:intergenic 20.0%
!!! CTTACATTTAACTTAATCAA+TGG - chr4.2:39260848-39260867 None:intergenic 20.0%
!!! GAACTTTTATTTTTTTTTGC+AGG + chr4.2:39261076-39261095 MS.gene003906:intron 20.0%
!!! GTTTATTCTTATTTAAGGTT+AGG - chr4.2:39260931-39260950 None:intergenic 20.0%
!!! TTACATAACATACCTTTTTA+AGG - chr4.2:39261613-39261632 None:intergenic 20.0%
!!! TTATTTTTTTTTGCAGGAAA+TGG + chr4.2:39261082-39261101 MS.gene003906:intron 20.0%
!!! TTTTTTCAGACAATAATTGA+TGG + chr4.2:39260996-39261015 MS.gene003906:intron 20.0%
! AAGAACAAAACAAACAATTG+GGG + chr4.2:39261198-39261217 MS.gene003906:CDS 25.0%
! CAAGAACAAAACAAACAATT+GGG + chr4.2:39261197-39261216 MS.gene003906:CDS 25.0%
! CACAAAAGTTGTCAAAAAAA+TGG - chr4.2:39261897-39261916 None:intergenic 25.0%
! CATACTTTGATCATATGTAA+AGG - chr4.2:39261844-39261863 None:intergenic 25.0%
! TAAAATTTGCACAAAAACCA+AGG - chr4.2:39261971-39261990 None:intergenic 25.0%
! TAATCAACCATCTTTGAATT+TGG - chr4.2:39260809-39260828 None:intergenic 25.0%
! TATATTATTTGTCTCAACGT+TGG + chr4.2:39261023-39261042 MS.gene003906:intron 25.0%
! TCAAGAACAAAACAAACAAT+TGG + chr4.2:39261196-39261215 MS.gene003906:CDS 25.0%
!! ATTCTAAGAGTTAGCTAATA+GGG - chr4.2:39261646-39261665 None:intergenic 25.0%
!! GATTTGGTAAGAAAATCAAA+AGG + chr4.2:39260760-39260779 MS.gene003906:intron 25.0%
!! GTGATTCATATTTTCCAATT+CGG - chr4.2:39261426-39261445 None:intergenic 25.0%
!!! ATGCTATTTTACTCAATCAT+AGG + chr4.2:39260889-39260908 MS.gene003906:intron 25.0%
!!! GTGTTATTTGAACAACTATT+TGG - chr4.2:39262038-39262057 None:intergenic 25.0%
!!! TAACATACCTTTTTAAGGTT+AGG - chr4.2:39261608-39261627 None:intergenic 25.0%
CATCTGCATCAAGAAAATTA+AGG - chr4.2:39261139-39261158 None:intergenic 30.0%
GATAACATTGAATGTGTTGT+TGG + chr4.2:39262380-39262399 MS.gene003906:CDS 30.0%
TAGGTCTCAAATAGATTTGT+AGG + chr4.2:39260952-39260971 MS.gene003906:intron 30.0%
TCTTGTTCCTAACCTTAAAA+AGG + chr4.2:39261598-39261617 MS.gene003906:CDS 30.0%
! AATTTTCTTGATGCAGATGT+GGG + chr4.2:39261140-39261159 MS.gene003906:CDS 30.0%
! CGAATACAATATATTTGCTG+AGG + chr4.2:39261106-39261125 MS.gene003906:CDS 30.0%
! GATTCTAAGAGTTAGCTAAT+AGG - chr4.2:39261647-39261666 None:intergenic 30.0%
! TAATTTTCTTGATGCAGATG+TGG + chr4.2:39261139-39261158 MS.gene003906:CDS 30.0%
! TGGTATTTGAAACTGAAAAG+AGG - chr4.2:39261333-39261352 None:intergenic 30.0%
! TTCATATTTTCCAATTCGGT+TGG - chr4.2:39261422-39261441 None:intergenic 30.0%
! TTGATGATACTTTCATTGCT+TGG - chr4.2:39260723-39260742 None:intergenic 30.0%
!! TAGGAAAACAAGTGTTGATT+CGG + chr4.2:39262432-39262451 MS.gene003906:CDS 30.0%
!!! ATTCTCTTTTGAGTTACTAG+GGG - chr4.2:39261381-39261400 None:intergenic 30.0%
!!! CATTCTCTTTTGAGTTACTA+GGG - chr4.2:39261382-39261401 None:intergenic 30.0%
!!! TCATTCTCTTTTGAGTTACT+AGG - chr4.2:39261383-39261402 None:intergenic 30.0%
!!! TTTTTTCCACAACTTCCAAT+CGG - chr4.2:39262307-39262326 None:intergenic 30.0%
AACTGAAAAGAGGAGTTAGA+TGG - chr4.2:39261323-39261342 None:intergenic 35.0%
AATAACAGTGTCTTACCCTT+TGG + chr4.2:39262530-39262549 MS.gene003906:CDS 35.0%
ACTCAACAGAAACCTCAAAA+GGG + chr4.2:39261444-39261463 MS.gene003906:CDS 35.0%
ACTTTACCTCTTTATTGCCT+TGG + chr4.2:39261951-39261970 MS.gene003906:intron 35.0%
CAAAAACCAAGGCAATAAAG+AGG - chr4.2:39261960-39261979 None:intergenic 35.0%
CATCTTTGAATTTGGAAAGC+AGG - chr4.2:39260801-39260820 None:intergenic 35.0%
CCAAAACCTCAAAAAGCAAA+AGG + chr4.2:39261492-39261511 MS.gene003906:CDS 35.0%
CTGCTTTCCAAATTCAAAGA+TGG + chr4.2:39260799-39260818 MS.gene003906:intron 35.0%
GAAAGAGCTTAAAAACCGAT+TGG + chr4.2:39262289-39262308 MS.gene003906:CDS 35.0%
TAAAAACCGATTGGAAGTTG+TGG + chr4.2:39262298-39262317 MS.gene003906:CDS 35.0%
TACTCAATCATAGGTCTCAA+GGG + chr4.2:39260898-39260917 MS.gene003906:intron 35.0%
TTACTCAATCATAGGTCTCA+AGG + chr4.2:39260897-39260916 MS.gene003906:intron 35.0%
TTGAATTTGGAAAGCAGGAA+AGG - chr4.2:39260796-39260815 None:intergenic 35.0%
! ATTTTCCAATGACCCTTTTG+AGG - chr4.2:39261459-39261478 None:intergenic 35.0%
! GGGGCTTCTAGTTAAAATTA+TGG + chr4.2:39262475-39262494 MS.gene003906:CDS 35.0%
!! GATGGTGATGGAGAAATATT+TGG - chr4.2:39261305-39261324 None:intergenic 35.0%
!!! CCTTTTGCTTTTTGAGGTTT+TGG - chr4.2:39261495-39261514 None:intergenic 35.0%
!!! TTCTCTTTTGAGTTACTAGG+GGG - chr4.2:39261380-39261399 None:intergenic 35.0%
AAAGAGGAGTTAGATGGTGA+TGG - chr4.2:39261317-39261336 None:intergenic 40.0%
AAGTATCATCAATCAGCAGC+TGG + chr4.2:39260731-39260750 MS.gene003906:CDS 40.0%
ACTCTTGCTTCCACTTGAAA+TGG - chr4.2:39262410-39262429 None:intergenic 40.0%
AGAAACCTCAAAAGGGTCAT+TGG + chr4.2:39261451-39261470 MS.gene003906:CDS 40.0%
CACTCAACAGAAACCTCAAA+AGG + chr4.2:39261443-39261462 MS.gene003906:CDS 40.0%
TCATGGTAAGGATCACATCA+TGG + chr4.2:39261523-39261542 MS.gene003906:CDS 40.0%
TCGAGTGTAGAATCTCCAAA+GGG - chr4.2:39262548-39262567 None:intergenic 40.0%
TGAAGATTCGTCATCATGTG+AGG + chr4.2:39262358-39262377 MS.gene003906:CDS 40.0%
TGCAAGAGCAATGAAGCTTT+GGG - chr4.2:39261576-39261595 None:intergenic 40.0%
! AGTTACTAGGGGGTGAATTT+TGG - chr4.2:39261370-39261389 None:intergenic 40.0%
! GTTACTAGGGGGTGAATTTT+GGG - chr4.2:39261369-39261388 None:intergenic 40.0%
! TTACTAGGGGGTGAATTTTG+GGG - chr4.2:39261368-39261387 None:intergenic 40.0%
!! TGACTTGCTGAGATCATTTG+TGG - chr4.2:39261231-39261250 None:intergenic 40.0%
!! TGTTGGTTCACCATTTCAAG+TGG + chr4.2:39262397-39262416 MS.gene003906:CDS 40.0%
!! TTTTGGGGGTTGTCAAAAGA+TGG - chr4.2:39261353-39261372 None:intergenic 40.0%
ATCAGTGTCTCCAACCGAAT+TGG + chr4.2:39261409-39261428 MS.gene003906:CDS 45.0%
ATCGCTGCATATGCATGGTT+TGG - chr4.2:39262339-39262358 None:intergenic 45.0%
CAGCAGCTGGTTATCTGATT+TGG + chr4.2:39260744-39260763 MS.gene003906:CDS 45.0%
CTGCAAGAGCAATGAAGCTT+TGG - chr4.2:39261577-39261596 None:intergenic 45.0%
GCTGAGATCATTTGTGGAAG+TGG - chr4.2:39261225-39261244 None:intergenic 45.0%
GTCGAGTGTAGAATCTCCAA+AGG - chr4.2:39262549-39262568 None:intergenic 45.0%
TCTTCATCGCTGCATATGCA+TGG - chr4.2:39262344-39262363 None:intergenic 45.0%
TTCTTGATGCAGATGTGGGA+GGG + chr4.2:39261144-39261163 MS.gene003906:CDS 45.0%
TTTCTTGATGCAGATGTGGG+AGG + chr4.2:39261143-39261162 MS.gene003906:CDS 45.0%
! TACTAGGGGGTGAATTTTGG+GGG - chr4.2:39261367-39261386 None:intergenic 45.0%
! TTCCAATGCAAGGAGCACAA+GGG + chr4.2:39262455-39262474 MS.gene003906:CDS 45.0%
!! CAAGTGGAAGCAAGAGTGTT+AGG + chr4.2:39262413-39262432 MS.gene003906:CDS 45.0%
!! CTGCATATGCATGGTTTGGT+CGG - chr4.2:39262335-39262354 None:intergenic 45.0%
!! GTTGATTCGGTTCCAATGCA+AGG + chr4.2:39262445-39262464 MS.gene003906:CDS 45.0%
!!! ACGAGGCCTTTTGCTTTTTG+AGG - chr4.2:39261501-39261520 None:intergenic 45.0%
!!! TTATTTTTTTTTGTAAATTT+TGG + chr4.2:39261993-39262012 MS.gene003906:intron 5.0%
!!! TTTATATTTTGAAATATTTA+GGG + chr4.2:39261785-39261804 MS.gene003906:intron 5.0%
TGATCCTTACCATGAGCACG+AGG - chr4.2:39261518-39261537 None:intergenic 50.0%
! GTTCCAATGCAAGGAGCACA+AGG + chr4.2:39262454-39262473 MS.gene003906:CDS 50.0%
! TCCAATGCAAGGAGCACAAG+GGG + chr4.2:39262456-39262475 MS.gene003906:CDS 50.0%
AAGGCCTCGTGCTCATGGTA+AGG + chr4.2:39261511-39261530 MS.gene003906:CDS 55.0%
AGCAAAAGGCCTCGTGCTCA+TGG + chr4.2:39261506-39261525 MS.gene003906:CDS 55.0%
GCCCCTTGTGCTCCTTGCAT+TGG - chr4.2:39262460-39262479 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 39260703 39262586 39260703 ID=MS.gene003906
chr4.2 mRNA 39260703 39262586 39260703 ID=MS.gene003906.t1;Parent=MS.gene003906
chr4.2 exon 39260703 39260765 39260703 ID=MS.gene003906.t1.exon1;Parent=MS.gene003906.t1
chr4.2 CDS 39260703 39260765 39260703 ID=cds.MS.gene003906.t1;Parent=MS.gene003906.t1
chr4.2 exon 39261098 39261619 39261098 ID=MS.gene003906.t1.exon2;Parent=MS.gene003906.t1
chr4.2 CDS 39261098 39261619 39261098 ID=cds.MS.gene003906.t1;Parent=MS.gene003906.t1
chr4.2 exon 39262248 39262586 39262248 ID=MS.gene003906.t1.exon3;Parent=MS.gene003906.t1
chr4.2 CDS 39262248 39262586 39262248 ID=cds.MS.gene003906.t1;Parent=MS.gene003906.t1
Gene Sequence

>MS.gene003906

ATGGAGGAAATCAACAACCAAGCAATGAAAGTATCATCAATCAGCAGCTGGTTATCTGATTTGGTAAGAAAATCAAAAGGCAATTATTCACCTTTCCTGCTTTCCAAATTCAAAGATGGTTGATTATTAATTAATTCTTTTGCCATTGATTAAGTTAAATGTAAGCTAAGTGAAGCTTATAATCTTATGCTATTTTACTCAATCATAGGTCTCAAGGGAAATAAGCCTAACCTTAAATAAGAATAAACATAGGTCTCAAATAGATTTGTAGGCCAAGTCTTCAAGATTTTTTTTTTTTTCAGACAATAATTGATGGACTTTATATTATTTGTCTCAACGTTGGAATAATATAGTCATTAATTAATTAACACTTGAACTTTTATTTTTTTTTGCAGGAAATGGACGAATACAATATATTTGCTGAGGAATGCAACCTTAATTTTCTTGATGCAGATGTGGGAGGGTTTCTTTCAGATGACATATCTAATGTATTTCAAGAACAAAACAAACAATTGGGGTCCACTTCCACAAATGATCTCAGCAAGTCATTCATTCACGAAACAATTGATAATAGTGACAAAATCAATGAATCACTTTCACCAAATATTTCTCCATCACCATCTAACTCCTCTTTTCAGTTTCAAATACCATCTTTTGACAACCCCCAAAATTCACCCCCTAGTAACTCAAAAGAGAATGAAACAATATCAGTGTCTCCAACCGAATTGGAAAATATGAATCACTCAACAGAAACCTCAAAAGGGTCATTGGAAAATGAAAAGTTTGAAGCCAAAACCTCAAAAAGCAAAAGGCCTCGTGCTCATGGTAAGGATCACATCATGGCTGAGAGAAATCGTAGAGAGAAACTCACCCAAAGCTTCATTGCTCTTGCAGCTCTTGTTCCTAACCTTAAAAAGGTATGTTATGTAATTTTCACTTACCCTATTAGCTAACTCTTAGAATCATCAACTATCAATCAATTACTTCATCGATAAATACATGTTGCACCAATTCATATATGTCATGTATAAGATTTTGATCACTAATATCTTTAAATATTTATCATAAAAAATTATGAAAAGTTTATATTTTGAAATATTTAGGGAGACAAATCGAACATCATATATATTAACGTTTCCCTTTACATATGATCAAAGTATGTTATATGAATGAGAAATGATATTTGAACATCCATTTTTTTGACAACTTTTGTGATAATTTTCTTTCTCATACTCACATTATTTTTTTACTTTACCTCTTTATTGCCTTGGTTTTTGTGCAAATTTTATTTTATTTTTTTTTGTAAATTTTGGTTGTCATATAAGTTGTCAACCAAATAGTTGTTCAAATAACACTCCTATATACACAAACAATATACATATTTAATAATTAATTACATATTTAATACATTCTTTGTCAAAAAATATTTGACATATAATTATGAGCGGTGAGTACAAATATAAGAAAATTAATTACATATTTAATACATTCTTTGTCAAAAAATATTTAATACATTCTTATCTTTCTTTATTATTTTTCTTTTAGATGGACAAGTTATCTGTACTAATTGACACTATCAAATACTTGAAAGAGCTTAAAAACCGATTGGAAGTTGTGGAAAAAAAGTCACCGACCAAACCATGCATATGCAGCGATGAAGATTCGTCATCATGTGAGGATAACATTGAATGTGTTGTTGGTTCACCATTTCAAGTGGAAGCAAGAGTGTTAGGAAAACAAGTGTTGATTCGGTTCCAATGCAAGGAGCACAAGGGGCTTCTAGTTAAAATTATGGTCGAAATTCAAAAATTTCAACTATTTGTTGTCAATAACAGTGTCTTACCCTTTGGAGATTCTACACTCGACATTACCATCATTGCTCAG
Protein sequence

>MS.gene003906.t1

MEEINNQAMKVSSISSWLSDLEMDEYNIFAEECNLNFLDADVGGFLSDDISNVFQEQNKQLGSTSTNDLSKSFIHETIDNSDKINESLSPNISPSPSNSSFQFQIPSFDNPQNSPPSNSKENETISVSPTELENMNHSTETSKGSLENEKFEAKTSKSKRPRAHGKDHIMAERNRREKLTQSFIALAALVPNLKKMDKLSVLIDTIKYLKELKNRLEVVEKKSPTKPCICSDEDSSSCEDNIECVVGSPFQVEARVLGKQVLIRFQCKEHKGLLVKIMVEIQKFQLFVVNNSVLPFGDSTLDITIIAQ