Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004023.t1 | XP_003606673.1 | 94.4 | 656 | 29 | 2 | 1 | 652 | 1 | 652 | 0.00E+00 | 1226.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004023.t1 | Q9XE58 | 44.6 | 690 | 272 | 17 | 69 | 652 | 82 | 767 | 2.3e-143 | 510.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004023.t1 | G7JUU0 | 94.4 | 656 | 29 | 2 | 1 | 652 | 1 | 652 | 0.0e+00 | 1226.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene004023.t1 | TF | GRAS |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004023.t1 | MTR_4g064200 | 96.494 | 656 | 15 | 2 | 1 | 652 | 1 | 652 | 0.0 | 1305 |
MS.gene004023.t1 | MTR_2g097463 | 59.455 | 624 | 203 | 12 | 66 | 652 | 47 | 657 | 0.0 | 719 |
MS.gene004023.t1 | MTR_2g097467 | 59.289 | 619 | 213 | 11 | 65 | 652 | 46 | 656 | 0.0 | 710 |
MS.gene004023.t1 | MTR_2g097473 | 54.731 | 687 | 245 | 13 | 1 | 652 | 1 | 656 | 0.0 | 702 |
MS.gene004023.t1 | MTR_7g062120 | 44.043 | 747 | 307 | 18 | 8 | 652 | 5 | 742 | 0.0 | 569 |
MS.gene004023.t1 | MTR_4g064160 | 56.303 | 476 | 185 | 9 | 187 | 652 | 224 | 686 | 1.77e-180 | 528 |
MS.gene004023.t1 | MTR_4g064120 | 47.068 | 631 | 265 | 17 | 63 | 652 | 26 | 628 | 2.08e-177 | 518 |
MS.gene004023.t1 | MTR_4g064150 | 53.877 | 503 | 206 | 12 | 163 | 652 | 246 | 735 | 3.81e-177 | 521 |
MS.gene004023.t1 | MTR_4g064180 | 46.276 | 631 | 270 | 16 | 63 | 652 | 26 | 628 | 2.64e-173 | 508 |
MS.gene004023.t1 | MTR_2g097410 | 55.076 | 463 | 183 | 9 | 202 | 652 | 294 | 743 | 3.23e-173 | 512 |
MS.gene004023.t1 | MTR_2g097390 | 41.368 | 614 | 309 | 15 | 70 | 652 | 50 | 643 | 1.74e-148 | 445 |
MS.gene004023.t1 | MTR_2g097310 | 49.318 | 440 | 202 | 6 | 218 | 652 | 217 | 640 | 5.71e-148 | 443 |
MS.gene004023.t1 | MTR_2g097350 | 48.140 | 457 | 214 | 8 | 203 | 652 | 202 | 642 | 7.59e-146 | 438 |
MS.gene004023.t1 | MTR_2g097380 | 45.517 | 435 | 183 | 5 | 218 | 652 | 183 | 563 | 1.65e-129 | 393 |
MS.gene004023.t1 | MTR_5g097480 | 33.245 | 376 | 246 | 4 | 277 | 649 | 170 | 543 | 1.74e-64 | 222 |
MS.gene004023.t1 | MTR_2g026250 | 31.630 | 411 | 271 | 6 | 243 | 649 | 191 | 595 | 6.88e-64 | 222 |
MS.gene004023.t1 | MTR_2g082090 | 32.708 | 373 | 246 | 4 | 280 | 649 | 208 | 578 | 8.29e-61 | 213 |
MS.gene004023.t1 | MTR_1g029420 | 33.333 | 369 | 241 | 4 | 284 | 649 | 225 | 591 | 1.55e-60 | 213 |
MS.gene004023.t1 | MTR_3g089055 | 31.707 | 369 | 247 | 4 | 284 | 649 | 198 | 564 | 7.29e-58 | 205 |
MS.gene004023.t1 | MTR_3g089055 | 31.707 | 369 | 247 | 4 | 284 | 649 | 203 | 569 | 8.53e-58 | 205 |
MS.gene004023.t1 | MTR_4g133660 | 32.626 | 377 | 246 | 6 | 279 | 650 | 170 | 543 | 6.88e-57 | 202 |
MS.gene004023.t1 | MTR_4g104020 | 32.642 | 386 | 231 | 9 | 281 | 649 | 146 | 519 | 9.37e-57 | 201 |
MS.gene004023.t1 | MTR_3g056110 | 31.510 | 384 | 254 | 7 | 271 | 649 | 162 | 541 | 3.34e-56 | 200 |
MS.gene004023.t1 | MTR_5g094450 | 30.769 | 377 | 252 | 5 | 280 | 649 | 157 | 531 | 1.00e-55 | 198 |
MS.gene004023.t1 | MTR_7g027190 | 31.202 | 391 | 236 | 6 | 279 | 649 | 295 | 672 | 3.67e-55 | 199 |
MS.gene004023.t1 | MTR_7g074650 | 31.436 | 369 | 233 | 8 | 287 | 651 | 441 | 793 | 3.54e-48 | 181 |
MS.gene004023.t1 | MTR_8g442410 | 29.974 | 387 | 249 | 6 | 279 | 652 | 150 | 527 | 3.97e-48 | 177 |
MS.gene004023.t1 | MTR_3g065980 | 30.711 | 394 | 233 | 10 | 277 | 649 | 165 | 539 | 3.84e-47 | 175 |
MS.gene004023.t1 | MTR_4g076140 | 27.378 | 431 | 244 | 8 | 281 | 649 | 45 | 468 | 3.82e-45 | 167 |
MS.gene004023.t1 | MTR_2g034260 | 30.179 | 391 | 241 | 12 | 279 | 649 | 205 | 583 | 5.46e-42 | 160 |
MS.gene004023.t1 | MTR_3g022830 | 27.990 | 418 | 240 | 8 | 285 | 649 | 26 | 435 | 2.54e-41 | 156 |
MS.gene004023.t1 | MTR_4g097080 | 28.042 | 378 | 256 | 8 | 284 | 651 | 133 | 504 | 3.74e-40 | 154 |
MS.gene004023.t1 | MTR_4g102790 | 25.455 | 385 | 265 | 8 | 280 | 651 | 288 | 663 | 4.75e-40 | 156 |
MS.gene004023.t1 | MTR_1g096030 | 30.273 | 403 | 236 | 13 | 276 | 649 | 72 | 458 | 7.72e-40 | 152 |
MS.gene004023.t1 | MTR_2g034250 | 28.941 | 387 | 252 | 8 | 279 | 649 | 205 | 584 | 2.12e-39 | 153 |
MS.gene004023.t1 | MTR_2g089100 | 28.395 | 405 | 243 | 10 | 284 | 652 | 52 | 445 | 2.06e-36 | 142 |
MS.gene004023.t1 | MTR_5g015490 | 27.979 | 386 | 252 | 9 | 284 | 651 | 114 | 491 | 2.83e-36 | 142 |
MS.gene004023.t1 | MTR_4g077760 | 27.807 | 374 | 248 | 9 | 285 | 649 | 194 | 554 | 1.08e-35 | 142 |
MS.gene004023.t1 | MTR_4g076020 | 28.533 | 375 | 229 | 10 | 287 | 652 | 87 | 431 | 1.24e-34 | 137 |
MS.gene004023.t1 | MTR_2g034280 | 26.753 | 385 | 260 | 9 | 279 | 649 | 198 | 574 | 1.92e-34 | 139 |
MS.gene004023.t1 | MTR_1g069725 | 27.857 | 420 | 263 | 15 | 243 | 650 | 72 | 463 | 5.02e-34 | 135 |
MS.gene004023.t1 | MTR_7g109580 | 27.273 | 385 | 251 | 10 | 279 | 649 | 184 | 553 | 1.69e-33 | 135 |
MS.gene004023.t1 | MTR_7g057230 | 29.655 | 290 | 190 | 6 | 366 | 649 | 375 | 656 | 2.32e-31 | 130 |
MS.gene004023.t1 | MTR_3g072710 | 28.193 | 415 | 238 | 18 | 270 | 650 | 112 | 500 | 2.76e-30 | 125 |
MS.gene004023.t1 | MTR_1g086970 | 24.566 | 403 | 268 | 11 | 268 | 649 | 90 | 477 | 1.01e-29 | 123 |
MS.gene004023.t1 | MTR_5g058860 | 27.033 | 418 | 267 | 15 | 258 | 650 | 93 | 497 | 1.90e-28 | 120 |
MS.gene004023.t1 | MTR_5g009080 | 30.645 | 248 | 153 | 5 | 252 | 492 | 30 | 265 | 7.04e-28 | 118 |
MS.gene004023.t1 | MTR_5g009080 | 30.000 | 150 | 104 | 1 | 500 | 649 | 329 | 477 | 1.07e-16 | 83.6 |
MS.gene004023.t1 | MTR_6g047750 | 26.385 | 379 | 252 | 10 | 285 | 649 | 296 | 661 | 1.20e-27 | 119 |
MS.gene004023.t1 | MTR_8g093070 | 27.229 | 415 | 267 | 16 | 252 | 652 | 105 | 498 | 8.01e-27 | 115 |
MS.gene004023.t1 | MTR_2g099110 | 26.923 | 390 | 252 | 11 | 284 | 651 | 74 | 452 | 2.33e-26 | 113 |
MS.gene004023.t1 | MTR_4g095500 | 25.180 | 417 | 259 | 11 | 284 | 652 | 59 | 470 | 1.43e-24 | 107 |
MS.gene004023.t1 | MTR_5g015950 | 23.923 | 418 | 265 | 12 | 284 | 652 | 35 | 448 | 2.42e-24 | 107 |
MS.gene004023.t1 | MTR_3g053270 | 23.923 | 418 | 265 | 12 | 284 | 652 | 35 | 448 | 2.42e-24 | 107 |
MS.gene004023.t1 | MTR_0092s0100 | 24.051 | 395 | 281 | 8 | 261 | 649 | 349 | 730 | 5.07e-19 | 92.0 |
MS.gene004023.t1 | MTR_0092s0100 | 24.051 | 395 | 281 | 8 | 261 | 649 | 346 | 727 | 5.65e-19 | 91.7 |
MS.gene004023.t1 | MTR_4g026485 | 26.633 | 199 | 138 | 3 | 261 | 457 | 248 | 440 | 5.69e-16 | 82.0 |
MS.gene004023.t1 | MTR_8g020840 | 22.951 | 427 | 271 | 17 | 261 | 649 | 141 | 547 | 1.48e-12 | 70.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004023.t1 | AT2G29060 | 44.131 | 673 | 320 | 19 | 11 | 651 | 8 | 656 | 1.42e-179 | 525 |
MS.gene004023.t1 | AT1G07530 | 55.973 | 452 | 190 | 6 | 208 | 652 | 318 | 767 | 3.17e-177 | 523 |
MS.gene004023.t1 | AT5G59450 | 44.640 | 625 | 273 | 15 | 39 | 652 | 38 | 600 | 1.24e-172 | 506 |
MS.gene004023.t1 | AT3G46600 | 46.755 | 601 | 248 | 10 | 59 | 652 | 46 | 581 | 1.03e-171 | 502 |
MS.gene004023.t1 | AT2G29065 | 45.691 | 615 | 284 | 14 | 70 | 652 | 34 | 630 | 1.88e-166 | 491 |
MS.gene004023.t1 | AT2G29060 | 52.298 | 457 | 207 | 8 | 203 | 651 | 240 | 693 | 7.44e-162 | 481 |
MS.gene004023.t1 | AT2G29060 | 39.216 | 102 | 51 | 3 | 11 | 112 | 8 | 98 | 6.91e-12 | 69.3 |
MS.gene004023.t1 | AT3G46600 | 52.980 | 453 | 189 | 5 | 205 | 652 | 116 | 549 | 2.26e-160 | 472 |
MS.gene004023.t1 | AT2G37650 | 51.844 | 461 | 205 | 6 | 205 | 651 | 257 | 714 | 3.29e-159 | 475 |
MS.gene004023.t1 | AT2G37650 | 51.844 | 461 | 205 | 6 | 205 | 651 | 245 | 702 | 4.10e-159 | 474 |
MS.gene004023.t1 | AT3G46600 | 58.221 | 371 | 152 | 2 | 284 | 652 | 4 | 373 | 1.19e-155 | 453 |
MS.gene004023.t1 | AT1G07520 | 51.648 | 455 | 195 | 10 | 208 | 652 | 92 | 531 | 6.29e-153 | 452 |
MS.gene004023.t1 | AT1G07520 | 51.648 | 455 | 195 | 10 | 208 | 652 | 92 | 531 | 6.29e-153 | 452 |
MS.gene004023.t1 | AT1G07520 | 51.648 | 455 | 195 | 10 | 208 | 652 | 257 | 696 | 1.95e-151 | 454 |
MS.gene004023.t1 | AT1G07520 | 51.648 | 455 | 195 | 10 | 208 | 652 | 256 | 695 | 3.25e-151 | 454 |
MS.gene004023.t1 | AT1G50600 | 34.234 | 444 | 269 | 9 | 213 | 649 | 98 | 525 | 2.17e-67 | 229 |
MS.gene004023.t1 | AT1G50600 | 34.234 | 444 | 269 | 9 | 213 | 649 | 169 | 596 | 9.12e-67 | 230 |
MS.gene004023.t1 | AT1G50600 | 34.234 | 444 | 269 | 9 | 213 | 649 | 173 | 600 | 1.05e-66 | 230 |
MS.gene004023.t1 | AT5G48150 | 31.072 | 457 | 284 | 8 | 210 | 649 | 47 | 489 | 1.04e-62 | 216 |
MS.gene004023.t1 | AT5G48150 | 31.072 | 457 | 284 | 8 | 210 | 649 | 47 | 489 | 1.04e-62 | 216 |
MS.gene004023.t1 | AT5G48150 | 31.072 | 457 | 284 | 8 | 210 | 649 | 47 | 489 | 1.04e-62 | 216 |
MS.gene004023.t1 | AT5G48150 | 31.072 | 457 | 284 | 8 | 210 | 649 | 47 | 489 | 1.04e-62 | 216 |
MS.gene004023.t1 | AT4G17230 | 33.158 | 380 | 249 | 4 | 275 | 651 | 149 | 526 | 3.86e-57 | 202 |
MS.gene004023.t1 | AT4G17230 | 33.158 | 380 | 249 | 4 | 275 | 651 | 149 | 526 | 3.86e-57 | 202 |
MS.gene004023.t1 | AT2G04890 | 31.903 | 373 | 242 | 5 | 280 | 649 | 49 | 412 | 6.28e-57 | 198 |
MS.gene004023.t1 | AT1G21450 | 31.806 | 371 | 245 | 6 | 284 | 649 | 225 | 592 | 9.77e-55 | 197 |
MS.gene004023.t1 | AT3G54220 | 32.979 | 376 | 221 | 12 | 287 | 651 | 296 | 651 | 3.51e-49 | 182 |
MS.gene004023.t1 | AT3G03450 | 31.620 | 389 | 230 | 12 | 277 | 649 | 176 | 544 | 1.33e-47 | 176 |
MS.gene004023.t1 | AT1G66350 | 30.561 | 481 | 268 | 17 | 198 | 649 | 62 | 505 | 3.83e-47 | 174 |
MS.gene004023.t1 | AT5G17490 | 30.233 | 387 | 232 | 11 | 277 | 649 | 153 | 515 | 2.28e-45 | 169 |
MS.gene004023.t1 | AT1G14920 | 31.217 | 378 | 237 | 9 | 279 | 649 | 167 | 528 | 2.48e-45 | 169 |
MS.gene004023.t1 | AT2G01570 | 31.771 | 384 | 227 | 12 | 279 | 649 | 219 | 580 | 5.17e-45 | 169 |
MS.gene004023.t1 | AT5G66770 | 31.608 | 367 | 239 | 9 | 288 | 649 | 224 | 583 | 1.28e-43 | 166 |
MS.gene004023.t1 | AT3G50650 | 30.618 | 356 | 232 | 7 | 302 | 649 | 193 | 541 | 4.86e-41 | 157 |
MS.gene004023.t1 | AT4G37650 | 27.708 | 397 | 248 | 11 | 283 | 651 | 145 | 530 | 1.01e-39 | 153 |
MS.gene004023.t1 | AT5G41920 | 27.083 | 384 | 251 | 9 | 276 | 649 | 35 | 399 | 3.35e-35 | 138 |
MS.gene004023.t1 | AT5G52510 | 27.632 | 380 | 247 | 10 | 287 | 649 | 271 | 639 | 6.45e-35 | 140 |
MS.gene004023.t1 | AT1G63100 | 27.336 | 428 | 278 | 12 | 245 | 650 | 213 | 629 | 6.73e-34 | 137 |
MS.gene004023.t1 | AT1G63100 | 27.336 | 428 | 278 | 12 | 245 | 650 | 238 | 654 | 7.73e-34 | 137 |
MS.gene004023.t1 | AT1G55580 | 26.923 | 390 | 214 | 11 | 313 | 649 | 73 | 444 | 5.32e-31 | 126 |
MS.gene004023.t1 | AT4G08250 | 30.194 | 361 | 226 | 14 | 303 | 649 | 128 | 476 | 6.75e-31 | 127 |
MS.gene004023.t1 | AT3G49950 | 27.990 | 393 | 245 | 10 | 284 | 651 | 30 | 409 | 1.13e-30 | 125 |
MS.gene004023.t1 | AT1G50420 | 30.088 | 226 | 143 | 4 | 281 | 497 | 54 | 273 | 1.33e-28 | 120 |
MS.gene004023.t1 | AT1G50420 | 30.667 | 150 | 103 | 1 | 500 | 649 | 330 | 478 | 8.53e-17 | 84.0 |
MS.gene004023.t1 | AT3G13840 | 25.822 | 426 | 257 | 20 | 251 | 649 | 116 | 509 | 7.55e-20 | 94.0 |
MS.gene004023.t1 | AT2G45160 | 22.025 | 395 | 250 | 13 | 285 | 649 | 272 | 638 | 2.92e-12 | 70.1 |
MS.gene004023.t1 | AT3G60630 | 28.502 | 207 | 113 | 6 | 352 | 536 | 327 | 520 | 4.22e-11 | 66.6 |
Find 129 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTGATTCTGTTCCTTCTTC+TGG | 0.154876 | 4.3:-39601600 | MS.gene004023:CDS |
TTCTGCTAGCTGTTTCTTGC+TGG | 0.218999 | 4.3:-39599820 | MS.gene004023:CDS |
AATATTCAAACCCTATTCTT+AGG | 0.247868 | 4.3:-39601542 | MS.gene004023:CDS |
TTCACTCTATCCACCAGTTC+TGG | 0.254183 | 4.3:+39599926 | None:intergenic |
TCGTCGCAATCACAGATTTC+TGG | 0.282921 | 4.3:-39601006 | MS.gene004023:CDS |
GTATATTAGTGATATTCTTA+TGG | 0.285545 | 4.3:-39601520 | MS.gene004023:CDS |
TCAAAGGATGTCGAATTTCT+TGG | 0.296573 | 4.3:-39600653 | MS.gene004023:CDS |
TCTTATGGATGAAGAAGATT+TGG | 0.306482 | 4.3:-39601505 | MS.gene004023:CDS |
TAAGTACTACGGTAGATTTA+TGG | 0.318992 | 4.3:-39600921 | MS.gene004023:CDS |
ATCTTCCTCAGCCAGGATTT+AGG | 0.323032 | 4.3:-39600480 | MS.gene004023:CDS |
CTCAGAAGATTCACCATTTG+AGG | 0.340982 | 4.3:+39601572 | None:intergenic |
CCACCAAGGCTTCGTATTAC+AGG | 0.346264 | 4.3:-39600508 | MS.gene004023:CDS |
ACACCATGTATGAAAATGTT+TGG | 0.351597 | 4.3:+39600214 | None:intergenic |
ACAATTGCCTTGCTCAGAAA+TGG | 0.366886 | 4.3:-39600384 | MS.gene004023:CDS |
TCACTAATATACCTAAGAAT+AGG | 0.370302 | 4.3:+39601531 | None:intergenic |
TCTGTTAACGGATGCATGTT+TGG | 0.374306 | 4.3:-39601705 | MS.gene004023:CDS |
TCTGGTTCAGGAAGATCTAA+TGG | 0.377826 | 4.3:-39600988 | MS.gene004023:CDS |
CTTACAAGCAGTGGCAGGTT+AGG | 0.393985 | 4.3:-39599985 | MS.gene004023:CDS |
GGATGGGAAGTGGGTTCTAC+AGG | 0.395488 | 4.3:-39599858 | MS.gene004023:CDS |
CAATCACAGATTTCTGGTTC+AGG | 0.395582 | 4.3:-39601000 | MS.gene004023:CDS |
TATCAAACAATGATGAGAAA+TGG | 0.404180 | 4.3:+39600134 | None:intergenic |
TCTGCTAGCTGTTTCTTGCT+GGG | 0.404236 | 4.3:-39599819 | MS.gene004023:CDS |
TGATGATGTTCTTCTTTGTA+AGG | 0.409875 | 4.3:-39601067 | MS.gene004023:CDS |
ATGATTGAGAAAGGGTTATT+CGG | 0.411272 | 4.3:-39600067 | MS.gene004023:CDS |
GTCTCTTCAACCCTTTCTGC+AGG | 0.412650 | 4.3:+39600457 | None:intergenic |
ACTTCCATTGGCTCCAGAAC+TGG | 0.415867 | 4.3:-39599939 | MS.gene004023:CDS |
TTCATACATGGTGTAGTGAA+TGG | 0.416386 | 4.3:-39600205 | MS.gene004023:CDS |
AAATTCGACATCCTTTGAAA+TGG | 0.417376 | 4.3:+39600658 | None:intergenic |
CACTAATATACCTAAGAATA+GGG | 0.422212 | 4.3:+39601532 | None:intergenic |
ATGATATACTGAAGCAGATT+AGG | 0.428145 | 4.3:-39600843 | MS.gene004023:CDS |
AGTGAAAGAAATGGTGAAGA+AGG | 0.428294 | 4.3:-39599909 | MS.gene004023:CDS |
GTGAAGTACTGCAAGAGGTT+TGG | 0.428838 | 4.3:-39600421 | MS.gene004023:CDS |
TGCCACTGCTTGTAAGTCTC+TGG | 0.433473 | 4.3:+39599992 | None:intergenic |
AGCCTCCACATTATTGACTT+TGG | 0.433913 | 4.3:-39600592 | MS.gene004023:CDS |
CGTTGTTGATTGCGATTCTC+CGG | 0.436900 | 4.3:-39601343 | MS.gene004023:CDS |
TCATCAACTACAAAATCTTT+CGG | 0.438965 | 4.3:+39599881 | None:intergenic |
GGTTATCTGATGAATGATAA+TGG | 0.445118 | 4.3:-39601174 | MS.gene004023:CDS |
GATGTTCTGGGATCAGCAAC+TGG | 0.455224 | 4.3:-39601420 | MS.gene004023:CDS |
TCTTCTGGAATAACCTCAAA+TGG | 0.456149 | 4.3:-39601585 | MS.gene004023:CDS |
GCAAGGCAATTGTACTCAAA+TGG | 0.459316 | 4.3:+39600394 | None:intergenic |
TGATAAAATTCCTCATGATC+CGG | 0.461532 | 4.3:-39601298 | MS.gene004023:CDS |
TCTAGATAATTTGATTAAGC+AGG | 0.461754 | 4.3:+39599794 | None:intergenic |
TTTGAGGTTATTCCAGAAGA+AGG | 0.463666 | 4.3:+39601588 | None:intergenic |
AAACCTCGCTGATCTCTAAC+CGG | 0.468294 | 4.3:+39601279 | None:intergenic |
TTAGCTCATTACTTTGCTGA+TGG | 0.473385 | 4.3:-39600784 | MS.gene004023:CDS |
AGGATTTAGGCCTGCAGAAA+GGG | 0.473613 | 4.3:-39600467 | MS.gene004023:CDS |
CTGATGAATGATAATGGTAT+TGG | 0.482313 | 4.3:-39601168 | MS.gene004023:CDS |
TGGGTTCTACAGGGTTGGAA+AGG | 0.483502 | 4.3:-39599848 | MS.gene004023:CDS |
CGCTGAAGTCCATCGCCACT+TGG | 0.487409 | 4.3:+39600808 | None:intergenic |
AAGACATCGCGATCGAAGAA+AGG | 0.489585 | 4.3:-39600964 | MS.gene004023:CDS |
CAATTGCCTTGCTCAGAAAT+GGG | 0.493446 | 4.3:-39600383 | MS.gene004023:CDS |
ATGCTGTGTTGAGGTTGATC+AGG | 0.494919 | 4.3:-39600246 | MS.gene004023:CDS |
CAGGATTTAGGCCTGCAGAA+AGG | 0.503621 | 4.3:-39600468 | MS.gene004023:CDS |
ATCGAAGAAAGGTTCCAGTA+AGG | 0.504093 | 4.3:-39600953 | MS.gene004023:CDS |
CTTTCTGCAGGCCTAAATCC+TGG | 0.515059 | 4.3:+39600469 | None:intergenic |
TATAGGCTGATGATTGAGAA+AGG | 0.518213 | 4.3:-39600076 | MS.gene004023:CDS |
CCTGTAATACGAAGCCTTGG+TGG | 0.518595 | 4.3:+39600508 | None:intergenic |
GAAGAATGTTTCTGATGAAA+CGG | 0.519403 | 4.3:-39600290 | MS.gene004023:CDS |
GTTTGATATGCTTGAAGCTA+CGG | 0.522691 | 4.3:-39600119 | MS.gene004023:CDS |
CATTCTTCGCCAAGTGGCGA+TGG | 0.522850 | 4.3:-39600817 | MS.gene004023:CDS |
TGAGAAAGGGTTATTCGGAA+GGG | 0.524037 | 4.3:-39600062 | MS.gene004023:CDS |
TTACAGCTTCTCCATTTCAA+AGG | 0.527701 | 4.3:-39600669 | MS.gene004023:CDS |
GGAATTGATCTTCCTCAGCC+AGG | 0.529102 | 4.3:-39600487 | MS.gene004023:CDS |
GGGTTCTACAGGGTTGGAAA+GGG | 0.530069 | 4.3:-39599847 | MS.gene004023:CDS |
CAACAGAACTATTCTGAAGC+TGG | 0.530899 | 4.3:-39600629 | MS.gene004023:CDS |
AAGGTTCAAACAACTTCCAT+TGG | 0.531648 | 4.3:-39599951 | MS.gene004023:CDS |
AAGGAGCAGAGAGGGTTGAA+AGG | 0.532815 | 4.3:-39600015 | MS.gene004023:CDS |
TCGAAGAAAGGTTCCAGTAA+GGG | 0.534571 | 4.3:-39600952 | MS.gene004023:CDS |
ATGCATCCGTTAACAGAACC+TGG | 0.537307 | 4.3:+39601711 | None:intergenic |
GAAGGAACAGAATCACTTGA+AGG | 0.539537 | 4.3:+39601606 | None:intergenic |
TCCACCAGTTCTGGAGCCAA+TGG | 0.540258 | 4.3:+39599935 | None:intergenic |
AGCTTGTGAAGGAGCAGAGA+GGG | 0.541628 | 4.3:-39600023 | MS.gene004023:CDS |
CAGCGTCTTTCAGAGAGATC+CGG | 0.542215 | 4.3:-39600535 | MS.gene004023:CDS |
GCAGAAAGGGTTGAAGAGAC+AGG | 0.545150 | 4.3:-39600454 | MS.gene004023:CDS |
TTGAGAAAGGGTTATTCGGA+AGG | 0.547490 | 4.3:-39600063 | MS.gene004023:CDS |
CAGCTTCAGAATAGTTCTGT+TGG | 0.547739 | 4.3:+39600630 | None:intergenic |
GATGTTCTTCTTTGTAAGGA+TGG | 0.548183 | 4.3:-39601063 | MS.gene004023:CDS |
AGAGGATTAGGGGAGAAGAG+AGG | 0.548379 | 4.3:-39601195 | MS.gene004023:CDS |
AAACAATCTTGCAACATGCA+AGG | 0.548776 | 4.3:+39601474 | None:intergenic |
CTTGAGGCGCGATTATCTGC+TGG | 0.549108 | 4.3:-39600760 | MS.gene004023:CDS |
TTACTTTGCTGATGGACTTG+AGG | 0.550105 | 4.3:-39600776 | MS.gene004023:CDS |
GGCCAGAGACTTACAAGCAG+TGG | 0.550744 | 4.3:-39599994 | MS.gene004023:CDS |
TTCAGCTTCCAAACATCACT+CGG | 0.553651 | 4.3:+39601246 | None:intergenic |
ACGAAGCCTTGGTGGCCCAC+CGG | 0.554118 | 4.3:+39600516 | None:intergenic |
AGTTGATGAGGATGGGAAGT+GGG | 0.558093 | 4.3:-39599867 | MS.gene004023:CDS |
CGAAGAAAGGTTCCAGTAAG+GGG | 0.564272 | 4.3:-39600951 | MS.gene004023:CDS |
TAGTTGATGAGGATGGGAAG+TGG | 0.564567 | 4.3:-39599868 | MS.gene004023:CDS |
CGGATCTCTCTGAAAGACGC+TGG | 0.565013 | 4.3:+39600536 | None:intergenic |
GGAAGTGGGTTCTACAGGGT+TGG | 0.566707 | 4.3:-39599853 | MS.gene004023:CDS |
TAGTGTCCCATTTCTGAGCA+AGG | 0.568684 | 4.3:+39600377 | None:intergenic |
TGATAGAGAAGAAGTAACAG+TGG | 0.569114 | 4.3:-39600332 | MS.gene004023:CDS |
TTTGGGTTCTAGAGGATTAG+GGG | 0.570677 | 4.3:-39601205 | MS.gene004023:CDS |
AGAGACTTACAAGCAGTGGC+AGG | 0.571929 | 4.3:-39599990 | MS.gene004023:CDS |
CTGCAGCAGACGACGACTGA+AGG | 0.573929 | 4.3:+39600719 | None:intergenic |
ATTCCTGTAATACGAAGCCT+TGG | 0.575936 | 4.3:+39600505 | None:intergenic |
CGTCTTTCAGAGAGATCCGG+TGG | 0.576548 | 4.3:-39600532 | MS.gene004023:CDS |
AACCTCAACACAGCATCTCT+AGG | 0.577064 | 4.3:+39600253 | None:intergenic |
ATAGGCTGATGATTGAGAAA+GGG | 0.583749 | 4.3:-39600075 | MS.gene004023:CDS |
TCTCAATGTGCACAAGCTGT+TGG | 0.587807 | 4.3:-39600889 | MS.gene004023:CDS |
AGGTTAGGAACAAGAGAGCA+AGG | 0.590161 | 4.3:-39599970 | MS.gene004023:CDS |
TCCATTGGCTCCAGAACTGG+TGG | 0.592807 | 4.3:-39599936 | MS.gene004023:CDS |
GACTTGTGAAGTACTGCAAG+AGG | 0.596425 | 4.3:-39600426 | MS.gene004023:CDS |
AGAGATCCGGTGGGCCACCA+AGG | 0.598231 | 4.3:-39600522 | MS.gene004023:CDS |
CTGTTGGTAGCTATGATCAA+AGG | 0.603395 | 4.3:-39600873 | MS.gene004023:CDS |
CGGAGAATCGCAATCAACAA+CGG | 0.604253 | 4.3:+39601344 | None:intergenic |
CGCGTGAAGATGATCAATAT+AGG | 0.605875 | 4.3:-39600093 | MS.gene004023:CDS |
GATGGGAAGTGGGTTCTACA+GGG | 0.611882 | 4.3:-39599857 | MS.gene004023:CDS |
GCAGGCCTAAATCCTGGCTG+AGG | 0.614834 | 4.3:+39600475 | None:intergenic |
CTGTGTTGAGGTTGATCAGG+AGG | 0.616107 | 4.3:-39600243 | MS.gene004023:CDS |
GGTGGATAGAGTGAAAGAAA+TGG | 0.616135 | 4.3:-39599918 | MS.gene004023:CDS |
AAATACCAAAGTCAATAATG+TGG | 0.616394 | 4.3:+39600587 | None:intergenic |
GTCCTAGAGATGCTGTGTTG+AGG | 0.620188 | 4.3:-39600255 | MS.gene004023:CDS |
GTTTGGAAGCTGAATGAAGA+GGG | 0.621160 | 4.3:-39601237 | MS.gene004023:CDS |
ATGGGACACTATAAGACTTG+AGG | 0.623248 | 4.3:-39600365 | MS.gene004023:CDS |
TACCAAAGTCAATAATGTGG+AGG | 0.623436 | 4.3:+39600590 | None:intergenic |
TGATCTCTAACCGGATCATG+AGG | 0.623977 | 4.3:+39601288 | None:intergenic |
GAAAGACGCTGGATGAGACA+AGG | 0.629384 | 4.3:+39600547 | None:intergenic |
AGGCAGCATTCTTCGCCAAG+TGG | 0.643469 | 4.3:-39600823 | MS.gene004023:CDS |
AGAAGATCTGAGAAGTAACA+AGG | 0.644638 | 4.3:-39601133 | MS.gene004023:CDS |
AAAGGGTTGAAGAGACAGGT+CGG | 0.646693 | 4.3:-39600450 | MS.gene004023:CDS |
TGTTTCTGATGAAACGGTGA+CGG | 0.654600 | 4.3:-39600284 | MS.gene004023:CDS |
GTCTTTCAGAGAGATCCGGT+GGG | 0.679118 | 4.3:-39600531 | MS.gene004023:CDS |
CTATATTGATCATCTTCACG+CGG | 0.683616 | 4.3:+39600094 | None:intergenic |
TCCGGAAAATAATGCATACG+AGG | 0.702672 | 4.3:-39601325 | MS.gene004023:CDS |
GTAAATGTGATAGCTTGTGA+AGG | 0.707067 | 4.3:-39600034 | MS.gene004023:CDS |
TAGCTTGTGAAGGAGCAGAG+AGG | 0.713278 | 4.3:-39600024 | MS.gene004023:CDS |
TGTTTGGAAGCTGAATGAAG+AGG | 0.744567 | 4.3:-39601238 | MS.gene004023:CDS |
GACTGAAGGAGTTTATACAT+CGG | 0.748275 | 4.3:+39600733 | None:intergenic |
GATCCGGTTAGAGATCAGCG+AGG | 0.803140 | 4.3:-39601282 | MS.gene004023:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTATATTAGTGATATTCTTA+TGG | - | chr4.3:39600032-39600051 | MS.gene004023:CDS | 20.0% |
! | AAATACCAAAGTCAATAATG+TGG | + | chr4.3:39600968-39600987 | None:intergenic | 25.0% |
! | AATATTCAAACCCTATTCTT+AGG | - | chr4.3:39600010-39600029 | MS.gene004023:CDS | 25.0% |
! | CACTAATATACCTAAGAATA+GGG | + | chr4.3:39600023-39600042 | None:intergenic | 25.0% |
! | GAATTATCACAAAAAATCGA+CGG | + | chr4.3:39600522-39600541 | None:intergenic | 25.0% |
! | TATCAAACAATGATGAGAAA+TGG | + | chr4.3:39601421-39601440 | None:intergenic | 25.0% |
! | TCACTAATATACCTAAGAAT+AGG | + | chr4.3:39600024-39600043 | None:intergenic | 25.0% |
! | TCATCAACTACAAAATCTTT+CGG | + | chr4.3:39601674-39601693 | None:intergenic | 25.0% |
!! | AAAATCGTTTTATGATGTTC+TGG | - | chr4.3:39600119-39600138 | MS.gene004023:CDS | 25.0% |
!! | AAATCGTTTTATGATGTTCT+GGG | - | chr4.3:39600120-39600139 | MS.gene004023:CDS | 25.0% |
!! | AATCCAAACATTTTCATACA+TGG | - | chr4.3:39601335-39601354 | MS.gene004023:CDS | 25.0% |
!!! | ATTGACTTTGGTATTTTCTA+TGG | - | chr4.3:39600972-39600991 | MS.gene004023:CDS | 25.0% |
ACACCATGTATGAAAATGTT+TGG | + | chr4.3:39601341-39601360 | None:intergenic | 30.0% | |
ATGATATACTGAAGCAGATT+AGG | - | chr4.3:39600709-39600728 | MS.gene004023:CDS | 30.0% | |
ATGATTGAGAAAGGGTTATT+CGG | - | chr4.3:39601485-39601504 | MS.gene004023:CDS | 30.0% | |
CTGAACCTAGTAAGAAAAAA+GGG | + | chr4.3:39601386-39601405 | None:intergenic | 30.0% | |
GGTTATCTGATGAATGATAA+TGG | - | chr4.3:39600378-39600397 | MS.gene004023:CDS | 30.0% | |
TAAGTACTACGGTAGATTTA+TGG | - | chr4.3:39600631-39600650 | MS.gene004023:CDS | 30.0% | |
TCTTATGGATGAAGAAGATT+TGG | - | chr4.3:39600047-39600066 | MS.gene004023:CDS | 30.0% | |
TGATAAAATTCCTCATGATC+CGG | - | chr4.3:39600254-39600273 | MS.gene004023:CDS | 30.0% | |
! | AAATTCGACATCCTTTGAAA+TGG | + | chr4.3:39600897-39600916 | None:intergenic | 30.0% |
! | AATTTTCCAGGTTCTGTTAA+CGG | - | chr4.3:39599835-39599854 | MS.gene004023:CDS | 30.0% |
! | GAAGAATGTTTCTGATGAAA+CGG | - | chr4.3:39601262-39601281 | MS.gene004023:CDS | 30.0% |
! | TGATGATGTTCTTCTTTGTA+AGG | - | chr4.3:39600485-39600504 | MS.gene004023:CDS | 30.0% |
! | TTGGTTTGAAAAAACAGACA+CGG | + | chr4.3:39599881-39599900 | None:intergenic | 30.0% |
!! | CTGATGAATGATAATGGTAT+TGG | - | chr4.3:39600384-39600403 | MS.gene004023:CDS | 30.0% |
!! | GAAAGATTTTGTAGTTGATG+AGG | - | chr4.3:39601673-39601692 | MS.gene004023:CDS | 30.0% |
!!! | ATTTTGTAGTTGATGAGGAT+GGG | - | chr4.3:39601678-39601697 | MS.gene004023:CDS | 30.0% |
!!! | CTTTTTTCTTACTAGGTTCA+GGG | - | chr4.3:39601385-39601404 | MS.gene004023:CDS | 30.0% |
AAACAATCTTGCAACATGCA+AGG | + | chr4.3:39600081-39600100 | None:intergenic | 35.0% | |
AAGGTTCAAACAACTTCCAT+TGG | - | chr4.3:39601601-39601620 | MS.gene004023:CDS | 35.0% | |
AGAAGATCTGAGAAGTAACA+AGG | - | chr4.3:39600419-39600438 | MS.gene004023:CDS | 35.0% | |
AGTGAAAGAAATGGTGAAGA+AGG | - | chr4.3:39601643-39601662 | MS.gene004023:CDS | 35.0% | |
ATAGGCTGATGATTGAGAAA+GGG | - | chr4.3:39601477-39601496 | MS.gene004023:CDS | 35.0% | |
CCTGAACCTAGTAAGAAAAA+AGG | + | chr4.3:39601387-39601406 | None:intergenic | 35.0% | |
CTATATTGATCATCTTCACG+CGG | + | chr4.3:39601461-39601480 | None:intergenic | 35.0% | |
GACTGAAGGAGTTTATACAT+CGG | + | chr4.3:39600822-39600841 | None:intergenic | 35.0% | |
GATGTTCTTCTTTGTAAGGA+TGG | - | chr4.3:39600489-39600508 | MS.gene004023:CDS | 35.0% | |
GGGGAAAAAACTAAGTACTA+CGG | - | chr4.3:39600620-39600639 | MS.gene004023:CDS | 35.0% | |
GTTTGATATGCTTGAAGCTA+CGG | - | chr4.3:39601433-39601452 | MS.gene004023:CDS | 35.0% | |
TACCAAAGTCAATAATGTGG+AGG | + | chr4.3:39600965-39600984 | None:intergenic | 35.0% | |
TATAGGCTGATGATTGAGAA+AGG | - | chr4.3:39601476-39601495 | MS.gene004023:CDS | 35.0% | |
TCAAAGGATGTCGAATTTCT+TGG | - | chr4.3:39600899-39600918 | MS.gene004023:CDS | 35.0% | |
TGATAGAGAAGAAGTAACAG+TGG | - | chr4.3:39601220-39601239 | MS.gene004023:CDS | 35.0% | |
TGGTTTGAAAAAACAGACAC+GGG | + | chr4.3:39599880-39599899 | None:intergenic | 35.0% | |
TTACAGCTTCTCCATTTCAA+AGG | - | chr4.3:39600883-39600902 | MS.gene004023:CDS | 35.0% | |
TTAGCTCATTACTTTGCTGA+TGG | - | chr4.3:39600768-39600787 | MS.gene004023:CDS | 35.0% | |
TTCATACATGGTGTAGTGAA+TGG | - | chr4.3:39601347-39601366 | MS.gene004023:CDS | 35.0% | |
! | ACAGTCGTAGAAAATTTTCC+AGG | - | chr4.3:39599823-39599842 | MS.gene004023:CDS | 35.0% |
! | ACCTCGTATGCATTATTTTC+CGG | + | chr4.3:39600231-39600250 | None:intergenic | 35.0% |
! | CGAATTTAAACGCGTTTTCT+GGG | + | chr4.3:39599906-39599925 | None:intergenic | 35.0% |
! | GTAAATGTGATAGCTTGTGA+AGG | - | chr4.3:39601518-39601537 | MS.gene004023:CDS | 35.0% |
! | GTATTTTCTATGGCTTTCAG+TGG | - | chr4.3:39600982-39601001 | MS.gene004023:CDS | 35.0% |
! | TCGAATTTAAACGCGTTTTC+TGG | + | chr4.3:39599907-39599926 | None:intergenic | 35.0% |
! | TTTGAGGTTATTCCAGAAGA+AGG | + | chr4.3:39599967-39599986 | None:intergenic | 35.0% |
!! | TCTTCTGGAATAACCTCAAA+TGG | - | chr4.3:39599967-39599986 | MS.gene004023:CDS | 35.0% |
!!! | ACTTAGTTTTTTCCCCTTAC+TGG | + | chr4.3:39600616-39600635 | None:intergenic | 35.0% |
!!! | AGTTTTGTTTTGGGTTCTAG+AGG | - | chr4.3:39600339-39600358 | MS.gene004023:CDS | 35.0% |
!!! | CCTTTTTTCTTACTAGGTTC+AGG | - | chr4.3:39601384-39601403 | MS.gene004023:CDS | 35.0% |
!!! | GAAGAGGGTAGTTTTGTTTT+GGG | - | chr4.3:39600330-39600349 | MS.gene004023:CDS | 35.0% |
!!! | GATTTTGTAGTTGATGAGGA+TGG | - | chr4.3:39601677-39601696 | MS.gene004023:CDS | 35.0% |
!!! | TGAAGAGGGTAGTTTTGTTT+TGG | - | chr4.3:39600329-39600348 | MS.gene004023:CDS | 35.0% |
!!! | TTTTGGGTTCTAGAGGATTA+GGG | - | chr4.3:39600346-39600365 | MS.gene004023:CDS | 35.0% |
ACAATTGCCTTGCTCAGAAA+TGG | - | chr4.3:39601168-39601187 | MS.gene004023:CDS | 40.0% | |
AGTGATTCTGTTCCTTCTTC+TGG | - | chr4.3:39599952-39599971 | MS.gene004023:CDS | 40.0% | |
ATCGAAGAAAGGTTCCAGTA+AGG | - | chr4.3:39600599-39600618 | MS.gene004023:CDS | 40.0% | |
ATGGGACACTATAAGACTTG+AGG | - | chr4.3:39601187-39601206 | MS.gene004023:CDS | 40.0% | |
ATTCCTGTAATACGAAGCCT+TGG | + | chr4.3:39601050-39601069 | None:intergenic | 40.0% | |
CAATTGCCTTGCTCAGAAAT+GGG | - | chr4.3:39601169-39601188 | MS.gene004023:CDS | 40.0% | |
CGCGTGAAGATGATCAATAT+AGG | - | chr4.3:39601459-39601478 | MS.gene004023:CDS | 40.0% | |
CTCAGAAGATTCACCATTTG+AGG | + | chr4.3:39599983-39600002 | None:intergenic | 40.0% | |
GAAGGAACAGAATCACTTGA+AGG | + | chr4.3:39599949-39599968 | None:intergenic | 40.0% | |
GCAAGGCAATTGTACTCAAA+TGG | + | chr4.3:39601161-39601180 | None:intergenic | 40.0% | |
GGTGGATAGAGTGAAAGAAA+TGG | - | chr4.3:39601634-39601653 | MS.gene004023:CDS | 40.0% | |
GTTTGGAAGCTGAATGAAGA+GGG | - | chr4.3:39600315-39600334 | MS.gene004023:CDS | 40.0% | |
TCCGGAAAATAATGCATACG+AGG | - | chr4.3:39600227-39600246 | MS.gene004023:CDS | 40.0% | |
TCGAAGAAAGGTTCCAGTAA+GGG | - | chr4.3:39600600-39600619 | MS.gene004023:CDS | 40.0% | |
TGAGAAAGGGTTATTCGGAA+GGG | - | chr4.3:39601490-39601509 | MS.gene004023:CDS | 40.0% | |
TGTTTGGAAGCTGAATGAAG+AGG | - | chr4.3:39600314-39600333 | MS.gene004023:CDS | 40.0% | |
TTCAGCTTCCAAACATCACT+CGG | + | chr4.3:39600309-39600328 | None:intergenic | 40.0% | |
TTGAGAAAGGGTTATTCGGA+AGG | - | chr4.3:39601489-39601508 | MS.gene004023:CDS | 40.0% | |
! | CAGCTTCAGAATAGTTCTGT+TGG | + | chr4.3:39600925-39600944 | None:intergenic | 40.0% |
! | TAAACGCGTTTTCTGGGTTT+TGG | + | chr4.3:39599900-39599919 | None:intergenic | 40.0% |
! | TCTGGTTCAGGAAGATCTAA+TGG | - | chr4.3:39600564-39600583 | MS.gene004023:CDS | 40.0% |
! | TCTGTTAACGGATGCATGTT+TGG | - | chr4.3:39599847-39599866 | MS.gene004023:CDS | 40.0% |
! | TGTTTCTGATGAAACGGTGA+CGG | - | chr4.3:39601268-39601287 | MS.gene004023:CDS | 40.0% |
!! | AGCCTCCACATTATTGACTT+TGG | - | chr4.3:39600960-39600979 | MS.gene004023:CDS | 40.0% |
!! | CAACAGAACTATTCTGAAGC+TGG | - | chr4.3:39600923-39600942 | MS.gene004023:CDS | 40.0% |
!! | CAATCACAGATTTCTGGTTC+AGG | - | chr4.3:39600552-39600571 | MS.gene004023:CDS | 40.0% |
!! | CTGTTGGTAGCTATGATCAA+AGG | - | chr4.3:39600679-39600698 | MS.gene004023:CDS | 40.0% |
!! | TTACTTTGCTGATGGACTTG+AGG | - | chr4.3:39600776-39600795 | MS.gene004023:CDS | 40.0% |
!! | TTTGGGTTCTAGAGGATTAG+GGG | - | chr4.3:39600347-39600366 | MS.gene004023:CDS | 40.0% |
!!! | ACGCACCCTTTTTTCTTACT+AGG | - | chr4.3:39601378-39601397 | MS.gene004023:CDS | 40.0% |
!!! | AGAGATCAGCGAGGTTTTTT+CGG | - | chr4.3:39600279-39600298 | MS.gene004023:CDS | 40.0% |
!!! | GTTTTGGGTTCTAGAGGATT+AGG | - | chr4.3:39600345-39600364 | MS.gene004023:CDS | 40.0% |
AAACCTCGCTGATCTCTAAC+CGG | + | chr4.3:39600276-39600295 | None:intergenic | 45.0% | |
AAAGGGTTGAAGAGACAGGT+CGG | - | chr4.3:39601102-39601121 | MS.gene004023:CDS | 45.0% | |
AACCTCAACACAGCATCTCT+AGG | + | chr4.3:39601302-39601321 | None:intergenic | 45.0% | |
AAGACATCGCGATCGAAGAA+AGG | - | chr4.3:39600588-39600607 | MS.gene004023:CDS | 45.0% | |
AGGATTTAGGCCTGCAGAAA+GGG | - | chr4.3:39601085-39601104 | MS.gene004023:CDS | 45.0% | |
AGGTTAGGAACAAGAGAGCA+AGG | - | chr4.3:39601582-39601601 | MS.gene004023:CDS | 45.0% | |
ATCTTCCTCAGCCAGGATTT+AGG | - | chr4.3:39601072-39601091 | MS.gene004023:CDS | 45.0% | |
ATGCATCCGTTAACAGAACC+TGG | + | chr4.3:39599844-39599863 | None:intergenic | 45.0% | |
CGAAGAAAGGTTCCAGTAAG+GGG | - | chr4.3:39600601-39600620 | MS.gene004023:CDS | 45.0% | |
CGGAGAATCGCAATCAACAA+CGG | + | chr4.3:39600211-39600230 | None:intergenic | 45.0% | |
TAGTGTCCCATTTCTGAGCA+AGG | + | chr4.3:39601178-39601197 | None:intergenic | 45.0% | |
TCGTCGCAATCACAGATTTC+TGG | - | chr4.3:39600546-39600565 | MS.gene004023:CDS | 45.0% | |
TCTCAATGTGCACAAGCTGT+TGG | - | chr4.3:39600663-39600682 | MS.gene004023:CDS | 45.0% | |
TGATCTCTAACCGGATCATG+AGG | + | chr4.3:39600267-39600286 | None:intergenic | 45.0% | |
TTCACTCTATCCACCAGTTC+TGG | + | chr4.3:39601629-39601648 | None:intergenic | 45.0% | |
! | ATGCTGTGTTGAGGTTGATC+AGG | - | chr4.3:39601306-39601325 | MS.gene004023:CDS | 45.0% |
! | CGTTGTTGATTGCGATTCTC+CGG | - | chr4.3:39600209-39600228 | MS.gene004023:CDS | 45.0% |
! | TCGGTTTTCCGAGTGATGTT+TGG | - | chr4.3:39600298-39600317 | MS.gene004023:CDS | 45.0% |
!! | AGTTGATGAGGATGGGAAGT+GGG | - | chr4.3:39601685-39601704 | MS.gene004023:CDS | 45.0% |
!! | GACTTGTGAAGTACTGCAAG+AGG | - | chr4.3:39601126-39601145 | MS.gene004023:CDS | 45.0% |
!! | GTGAAGTACTGCAAGAGGTT+TGG | - | chr4.3:39601131-39601150 | MS.gene004023:CDS | 45.0% |
!! | TAGTTGATGAGGATGGGAAG+TGG | - | chr4.3:39601684-39601703 | MS.gene004023:CDS | 45.0% |
!! | TCTGCTAGCTGTTTCTTGCT+GGG | - | chr4.3:39601733-39601752 | MS.gene004023:CDS | 45.0% |
!! | TTCTGCTAGCTGTTTCTTGC+TGG | - | chr4.3:39601732-39601751 | MS.gene004023:CDS | 45.0% |
AAGGAGCAGAGAGGGTTGAA+AGG | - | chr4.3:39601537-39601556 | MS.gene004023:CDS | 50.0% | |
AGAGACTTACAAGCAGTGGC+AGG | - | chr4.3:39601562-39601581 | MS.gene004023:CDS | 50.0% | |
AGAGGATTAGGGGAGAAGAG+AGG | - | chr4.3:39600357-39600376 | MS.gene004023:CDS | 50.0% | |
AGCTTGTGAAGGAGCAGAGA+GGG | - | chr4.3:39601529-39601548 | MS.gene004023:CDS | 50.0% | |
CAGCGTCTTTCAGAGAGATC+CGG | - | chr4.3:39601017-39601036 | MS.gene004023:CDS | 50.0% | |
CAGGATTTAGGCCTGCAGAA+AGG | - | chr4.3:39601084-39601103 | MS.gene004023:CDS | 50.0% | |
CCACCAAGGCTTCGTATTAC+AGG | - | chr4.3:39601044-39601063 | MS.gene004023:CDS | 50.0% | |
CCTGTAATACGAAGCCTTGG+TGG | + | chr4.3:39601047-39601066 | None:intergenic | 50.0% | |
CTTACAAGCAGTGGCAGGTT+AGG | - | chr4.3:39601567-39601586 | MS.gene004023:CDS | 50.0% | |
CTTTCTGCAGGCCTAAATCC+TGG | + | chr4.3:39601086-39601105 | None:intergenic | 50.0% | |
GAAAGACGCTGGATGAGACA+AGG | + | chr4.3:39601008-39601027 | None:intergenic | 50.0% | |
GCAGAAAGGGTTGAAGAGAC+AGG | - | chr4.3:39601098-39601117 | MS.gene004023:CDS | 50.0% | |
GGAATTGATCTTCCTCAGCC+AGG | - | chr4.3:39601065-39601084 | MS.gene004023:CDS | 50.0% | |
GGGTTCTACAGGGTTGGAAA+GGG | - | chr4.3:39601705-39601724 | MS.gene004023:CDS | 50.0% | |
GTCCTAGAGATGCTGTGTTG+AGG | - | chr4.3:39601297-39601316 | MS.gene004023:CDS | 50.0% | |
GTCTCTTCAACCCTTTCTGC+AGG | + | chr4.3:39601098-39601117 | None:intergenic | 50.0% | |
GTCTTTCAGAGAGATCCGGT+GGG | - | chr4.3:39601021-39601040 | MS.gene004023:CDS | 50.0% | |
TGCCACTGCTTGTAAGTCTC+TGG | + | chr4.3:39601563-39601582 | None:intergenic | 50.0% | |
TGGGTTCTACAGGGTTGGAA+AGG | - | chr4.3:39601704-39601723 | MS.gene004023:CDS | 50.0% | |
! | CTGTGTTGAGGTTGATCAGG+AGG | - | chr4.3:39601309-39601328 | MS.gene004023:CDS | 50.0% |
! | GATGGGAAGTGGGTTCTACA+GGG | - | chr4.3:39601695-39601714 | MS.gene004023:CDS | 50.0% |
! | TAGCTTGTGAAGGAGCAGAG+AGG | - | chr4.3:39601528-39601547 | MS.gene004023:CDS | 50.0% |
!! | ACTTCCATTGGCTCCAGAAC+TGG | - | chr4.3:39601613-39601632 | MS.gene004023:CDS | 50.0% |
!! | GATGTTCTGGGATCAGCAAC+TGG | - | chr4.3:39600132-39600151 | MS.gene004023:CDS | 50.0% |
AGGCAGCATTCTTCGCCAAG+TGG | - | chr4.3:39600729-39600748 | MS.gene004023:CDS | 55.0% | |
CATTCTTCGCCAAGTGGCGA+TGG | - | chr4.3:39600735-39600754 | MS.gene004023:CDS | 55.0% | |
CGTCTTTCAGAGAGATCCGG+TGG | - | chr4.3:39601020-39601039 | MS.gene004023:CDS | 55.0% | |
CTTGAGGCGCGATTATCTGC+TGG | - | chr4.3:39600792-39600811 | MS.gene004023:CDS | 55.0% | |
GATCCGGTTAGAGATCAGCG+AGG | - | chr4.3:39600270-39600289 | MS.gene004023:CDS | 55.0% | |
GGCCAGAGACTTACAAGCAG+TGG | - | chr4.3:39601558-39601577 | MS.gene004023:CDS | 55.0% | |
! | CGGATCTCTCTGAAAGACGC+TGG | + | chr4.3:39601019-39601038 | None:intergenic | 55.0% |
! | GGAAGTGGGTTCTACAGGGT+TGG | - | chr4.3:39601699-39601718 | MS.gene004023:CDS | 55.0% |
! | GGATGGGAAGTGGGTTCTAC+AGG | - | chr4.3:39601694-39601713 | MS.gene004023:CDS | 55.0% |
!! | TCCACCAGTTCTGGAGCCAA+TGG | + | chr4.3:39601620-39601639 | None:intergenic | 55.0% |
!! | TCCATTGGCTCCAGAACTGG+TGG | - | chr4.3:39601616-39601635 | MS.gene004023:CDS | 55.0% |
CGCTGAAGTCCATCGCCACT+TGG | + | chr4.3:39600747-39600766 | None:intergenic | 60.0% | |
CTGCAGCAGACGACGACTGA+AGG | + | chr4.3:39600836-39600855 | None:intergenic | 60.0% | |
GCAGGCCTAAATCCTGGCTG+AGG | + | chr4.3:39601080-39601099 | None:intergenic | 60.0% | |
AGAGATCCGGTGGGCCACCA+AGG | - | chr4.3:39601030-39601049 | MS.gene004023:CDS | 65.0% | |
! | ACGAAGCCTTGGTGGCCCAC+CGG | + | chr4.3:39601039-39601058 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 39599808 | 39601766 | 39599808 | ID=MS.gene004023 |
chr4.3 | mRNA | 39599808 | 39601766 | 39599808 | ID=MS.gene004023.t1;Parent=MS.gene004023 |
chr4.3 | exon | 39599808 | 39601766 | 39599808 | ID=MS.gene004023.t1.exon1;Parent=MS.gene004023.t1 |
chr4.3 | CDS | 39599808 | 39601766 | 39599808 | ID=cds.MS.gene004023.t1;Parent=MS.gene004023.t1 |
Gene Sequence |
Protein sequence |