AlfalfaGEDB | MS.gene004040

M. sativa cultivar XinJiangDaYe / MS.gene004040

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004040.t1	KEH30160.1	90.4	406	39	0	1	406	93	498	2.00E-205	724.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004040.t1	P46573	62.5	416	130	6	9	404	1	410	8.5e-136	485.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004040.t1	A0A072UWB3	90.4	406	39	0	1	406	93	498	1.5e-205	724.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004040.t1	MTR_4g063930	90.394	406	39	0	1	406	93	498	0.0	761
MS.gene004040.t1	MTR_4g063945	78.810	420	70	3	1	406	1	415	0.0	665
MS.gene004040.t1	MTR_4g063940	78.622	421	72	3	1	406	1	418	0.0	658
MS.gene004040.t1	MTR_4g063945	78.333	420	70	4	1	406	1	413	0.0	657
MS.gene004040.t1	MTR_4g063935	77.327	419	81	2	1	406	19	436	0.0	644
MS.gene004040.t1	MTR_4g063935	76.850	419	81	3	1	406	1	416	0.0	636
MS.gene004040.t1	MTR_2g096950	68.049	410	116	5	9	406	1	407	0.0	553
MS.gene004040.t1	MTR_7g061660	61.029	408	144	5	9	404	1	405	3.58e-173	489
MS.gene004040.t1	MTR_5g079840	59.021	388	147	4	9	386	1	386	9.66e-166	471
MS.gene004040.t1	MTR_2g096970	63.889	360	113	5	9	365	1	346	4.19e-158	449

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004040.t1	AT2G28930	61.538	416	134	5	9	404	1	410	2.20e-179	506
MS.gene004040.t1	AT2G28930	61.538	416	137	5	9	404	1	413	2.98e-179	505
MS.gene004040.t1	AT1G07570	69.167	360	103	3	9	366	1	354	1.35e-178	504
MS.gene004040.t1	AT1G07570	69.167	360	103	3	9	366	1	354	1.35e-178	504
MS.gene004040.t1	AT1G07570	69.167	360	103	3	9	366	1	354	1.35e-178	504
MS.gene004040.t1	AT2G28930	67.213	366	99	4	59	404	57	421	1.63e-175	496
MS.gene004040.t1	AT1G07570	69.429	350	104	2	19	366	17	365	5.19e-174	493
MS.gene004040.t1	AT5G02290	57.360	394	159	4	9	400	1	387	5.85e-163	463
MS.gene004040.t1	AT5G02290	57.360	394	159	4	9	400	1	387	5.85e-163	463
MS.gene004040.t1	AT2G39660	61.290	310	118	1	59	366	44	353	2.63e-144	416

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Find 98 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTGTATAGTTT+TGG	0.335406	4.3:-39773918	MS.gene004040:CDS
AAACATCATCTAATTCATAT+TGG	0.369537	4.3:+39773751	None:intergenic
AAACGGAGGCTCCAAGAAAG+AGG	0.572488	4.3:+39774561	None:intergenic
AATGATGATACAGAAAATGT+TGG	0.588823	4.3:-39775528	MS.gene004040:CDS
AATGCAAAACTTTCTAATTT+TGG	0.035265	4.3:-39774268	MS.gene004040:CDS
AATTAGTATTGTTTCTGCCA+TGG	0.508841	4.3:-39775736	MS.gene004040:CDS
ACAAAAGTCATGTCTCCACC+AGG	0.606241	4.3:-39774219	MS.gene004040:CDS
ACAACTCAATTTGGTGGAAT+GGG	0.443962	4.3:-39773835	MS.gene004040:CDS
ACAACTCAGTGTGACCTTTG+AGG	0.481810	4.3:+39775253	None:intergenic
ACCAAATTGAGTTGTCTTGG+TGG	0.420746	4.3:+39773843	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAGTCTCACAAATTCTT+AGG	-	chr4.3:39774367-39774386	MS.gene004040:intron	30.0%
ACTTCAGCCTAAAATAGAAA+TGG	+	chr4.3:39774468-39774487	None:intergenic	30.0%
CAAAGCAAAGTTCTTCAAAT+TGG	+	chr4.3:39773840-39773859	None:intergenic	30.0%
CATATACCATTTCAGTTTCA+GGG	-	chr4.3:39773705-39773724	MS.gene004040:CDS	30.0%
GTTATAGATTATAATACCGG+TGG	+	chr4.3:39775115-39775134	None:intergenic	30.0%
TAAGAATTTGTGAGACTGTT+TGG	+	chr4.3:39774368-39774387	None:intergenic	30.0%
TATGAATACCGGAATTAATC+GGG	+	chr4.3:39773598-39773617	None:intergenic	30.0%
TCACATTGTTATACTTGACA+AGG	-	chr4.3:39774641-39774660	MS.gene004040:intron	30.0%
TCATATACCATTTCAGTTTC+AGG	-	chr4.3:39773704-39773723	MS.gene004040:CDS	30.0%
ACCAAATATGTTGTAACAGG+AGG	-	chr4.3:39774677-39774696	MS.gene004040:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	39773533	39775763	39773533	ID=MS.gene004040
chr4.3	mRNA	39773533	39775763	39773533	ID=MS.gene004040.t1;Parent=MS.gene004040
chr4.3	exon	39775688	39775763	39775688	ID=MS.gene004040.t1.exon1;Parent=MS.gene004040.t1
chr4.3	CDS	39775688	39775763	39775688	ID=cds.MS.gene004040.t1;Parent=MS.gene004040.t1
chr4.3	exon	39775251	39775576	39775251	ID=MS.gene004040.t1.exon2;Parent=MS.gene004040.t1
chr4.3	CDS	39775251	39775576	39775251	ID=cds.MS.gene004040.t1;Parent=MS.gene004040.t1
chr4.3	exon	39774681	39774816	39774681	ID=MS.gene004040.t1.exon3;Parent=MS.gene004040.t1
chr4.3	CDS	39774681	39774816	39774681	ID=cds.MS.gene004040.t1;Parent=MS.gene004040.t1
chr4.3	exon	39774458	39774600	39774458	ID=MS.gene004040.t1.exon4;Parent=MS.gene004040.t1
chr4.3	CDS	39774458	39774600	39774458	ID=cds.MS.gene004040.t1;Parent=MS.gene004040.t1
chr4.3	exon	39774179	39774296	39774179	ID=MS.gene004040.t1.exon5;Parent=MS.gene004040.t1
chr4.3	CDS	39774179	39774296	39774179	ID=cds.MS.gene004040.t1;Parent=MS.gene004040.t1
chr4.3	exon	39773533	39773954	39773533	ID=MS.gene004040.t1.exon6;Parent=MS.gene004040.t1
chr4.3	CDS	39773533	39773954	39773533	ID=cds.MS.gene004040.t1;Parent=MS.gene004040.t1

Gene Sequence

>MS.gene004040

ATGGGAATTAGTATTGTTTCTGCCATGGGAGTTTGTTTGGGCAGCCATACCAAAGCCGAAGGCCCGATTAATTCCGGTATTCATATTCTTAAACATCAAGATCACCTTATTAATTACATATGTACACTAGTAAGATGTAATACGCAATTGATGTAATTTTAGTTTTATTTATCATATACCATTTCAGTTTCAGGGTTGAGTTCAAAGAGTGTGAATGATGATACAGAAAATGTTGGTAGCCCATGTTGCAAGGTTTCTGACGAACTTATTAGCTCAAGTAACGCGGGAGAGATCTTGCAATCATCCAATTTGAAGAACTTTGCTTTGACAGAACTTCAGGCTGCTACGAGAAATTTCCGTGTAGACAGTGTGTTAGGAGAAGGTGATTTTGGATCAGTTTTTAAAGGTTGGATTGATAAACACTCACCTTCTGCTGCCAAACCTGGCACAGGCATGGCTGTTGCTGTCAAAAGACTTAATCAAGATGCCCTCAAAGGTCACACTGAGTTGTTGGTTAGTTTAACTCATTTAATTAAGAAGCAAACAATGCCTTTGTTGCATATTTAATTATTATTATTATGGCATCTTTGAGAATATTTTTACATCTTTCATCTTATCCATCTCTGATAAGTTAACTAATCTTATTAGAAAACCTAGAAAACCAGCTCTAGTGAAGCATTTATCATATAAGTGTTTATGTATAAGTTATTTCAATAATAAATATAAAATATAGCAAACTGTTTTCATATAAGTTATAACATGTTTTCATAAGCTATCTTGAAGAGCTTATAGAAATAAGATGAAAACAACTTAGCTGATTTCTTAAACTCTTCCAAACAGTCTCACAAATTCTTAGGTCCCTCAATCAATTCTAACAAGTCAAACAGACTTTAAGAGGGATTTGTTTTGAGTTTTACATCTAATAGTGTTTTCCATTTCTATTTTAGGCTGAAGTGAACTATCTAGGCCAGCTTTCTCATCCTCATCTAGTGAAATTGATCGGTTATTGCCTTGAAGAGGAGAACAAAATTCTGGTCTATGAATTTATGCCTCGTGGCACGTTGGAGAATCACTTGTTCATCAGTGAGTTTCTTCCTATTTCATCTTTTCACATTGTTATACTTGACAAGGCATGCCTAACATTACCAAATATGTTGTAACAGGAGGCTCATATTTTCAACCTCTTTCTTGGAGCCTCCGTTTGAAGGTCGCTCTTGGTGCTGCCAAAGGCCTTGCATTTCTTCACAGTTCTGAGACAAAAGCTATATACAGAGATTTCAAGACTTCAAATGTCTTACTAGATTCAGTATGTGTCCTTTTGAACACACCCAACATACAAATGAATATATTCGAATTTGAAACCCTTACAGCCGCTGCACGGTGCAGAAGCCGTGGAGATCCAAATCAGAATATATTATGTTTATATAGGTATCATATCTGAAATTTTTCTTGGTAACTTGATCACAGAATTATAATGCAAAACTTTCTAATTTTGGGCTGGCAAAGGGCGGGTCCGCCGTTGACAAAAGTCATGTCTCCACCAGGCTAACCTACGGATATGCAGCTCCAGAATACCTAGCCACCGGTATTATAATCTATAACCACTAGAGAAAATCAAATTATCAACATATATTAGAGACAGAAAAAATGAAATTAATGTCAAATTTTGGTGTCTATAATACTTAACAACATAATTAGAAACAAATTTCATGTTTTTCTGTCTATCCGTTGAGTTCAATAACATAATCGATAATCGACTAGCAAACATCATTTGGTTAGTGACTAATATAAAATGATTTGTTGATGAAGGTAATCACACTGCTAAAAGTGATGTGTATAGTTTTGGAGTTGTGCTATTGGAAATGTTGTCGGGGAGGAGAGTTGTCGACAAGAATAGGCCACCAAGACAACTCAATTTGGTGGAATGGGCTAAGCCATATATATCCAACAAGCGTAAGATTTTGCGTGTGTTGGATAGCCGTCTTGAGGGCCAATATGAATTAGATGATGTTTATAAGGTTGCTACACTCTCCCTAAGGTGCCTTTCTATAGAAGCCAAGTTGAGACCAAACATGGACGAGGTTGTTACAAATCTGGAGCAGTTGCAGGTTCCACATGTAAATGGAAGCAACCAGAGTCGTCTGCGTAGAAGAAGTGCTGATGATGTTACCAATGTTAGAACAGCCTCAACAGCTTTTCCCCAACGTTCTTCTTCTATGCTATGTACATGA

Protein sequence

>MS.gene004040.t1

MGISIVSAMGVCLGSHTKAEGPINSVSGLSSKSVNDDTENVGSPCCKVSDELISSSNAGEILQSSNLKNFALTELQAATRNFRVDSVLGEGDFGSVFKGWIDKHSPSAAKPGTGMAVAVKRLNQDALKGHTELLAEVNYLGQLSHPHLVKLIGYCLEEENKILVYEFMPRGTLENHLFIRGSYFQPLSWSLRLKVALGAAKGLAFLHSSETKAIYRDFKTSNVLLDSNYNAKLSNFGLAKGGSAVDKSHVSTRLTYGYAAPEYLATGNHTAKSDVYSFGVVLLEMLSGRRVVDKNRPPRQLNLVEWAKPYISNKRKILRVLDSRLEGQYELDDVYKVATLSLRCLSIEAKLRPNMDEVVTNLEQLQVPHVNGSNQSRLRRRSADDVTNVRTASTAFPQRSSSMLCT