Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004125.t1 | XP_003606565.1 | 86.9 | 244 | 27 | 3 | 1 | 241 | 1 | 242 | 7.20E-110 | 406.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004125.t1 | Q9SK53 | 44.6 | 74 | 38 | 1 | 116 | 186 | 200 | 273 | 2.3e-08 | 60.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004125.t1 | G7JSL7 | 86.9 | 244 | 27 | 3 | 1 | 241 | 1 | 242 | 5.2e-110 | 406.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene004125.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004125.t1 | MTR_4g061823 | 90.574 | 244 | 18 | 3 | 1 | 241 | 1 | 242 | 5.07e-149 | 415 |
| MS.gene004125.t1 | MTR_4g061910 | 90.574 | 244 | 18 | 3 | 1 | 241 | 1 | 242 | 5.07e-149 | 415 |
| MS.gene004125.t1 | MTR_2g096080 | 64.171 | 187 | 61 | 5 | 56 | 241 | 70 | 251 | 1.34e-71 | 219 |
| MS.gene004125.t1 | MTR_8g098725 | 47.857 | 140 | 58 | 7 | 55 | 186 | 141 | 273 | 9.38e-25 | 100 |
| MS.gene004125.t1 | MTR_8g098725 | 48.227 | 141 | 52 | 8 | 55 | 186 | 141 | 269 | 2.94e-24 | 99.0 |
| MS.gene004125.t1 | MTR_1g044785 | 50.562 | 89 | 44 | 0 | 127 | 215 | 119 | 207 | 8.47e-21 | 87.8 |
| MS.gene004125.t1 | MTR_1g008220 | 36.691 | 139 | 71 | 3 | 53 | 187 | 152 | 277 | 1.90e-19 | 85.1 |
| MS.gene004125.t1 | MTR_1g073350 | 46.939 | 98 | 49 | 2 | 92 | 187 | 265 | 361 | 3.05e-19 | 86.3 |
| MS.gene004125.t1 | MTR_5g010120 | 44.898 | 98 | 38 | 1 | 89 | 186 | 136 | 217 | 1.02e-18 | 82.8 |
| MS.gene004125.t1 | MTR_2g068730 | 63.333 | 60 | 22 | 0 | 127 | 186 | 148 | 207 | 5.79e-18 | 80.9 |
| MS.gene004125.t1 | MTR_3g091340 | 41.237 | 97 | 43 | 2 | 91 | 186 | 162 | 245 | 4.82e-16 | 75.5 |
| MS.gene004125.t1 | MTR_3g091340 | 41.237 | 97 | 43 | 2 | 91 | 186 | 155 | 238 | 5.29e-16 | 75.1 |
| MS.gene004125.t1 | MTR_3g091340 | 41.237 | 97 | 43 | 2 | 91 | 186 | 191 | 274 | 9.39e-16 | 75.1 |
| MS.gene004125.t1 | MTR_1g013450 | 46.552 | 58 | 31 | 0 | 133 | 190 | 246 | 303 | 1.68e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004125.t1 | AT5G41380 | 41.489 | 188 | 80 | 7 | 36 | 213 | 107 | 274 | 3.20e-30 | 114 |
| MS.gene004125.t1 | AT5G59990 | 45.029 | 171 | 70 | 6 | 51 | 220 | 87 | 234 | 6.82e-29 | 109 |
| MS.gene004125.t1 | AT1G63820 | 51.402 | 107 | 41 | 3 | 92 | 191 | 139 | 241 | 4.72e-26 | 103 |
| MS.gene004125.t1 | AT1G04500 | 34.078 | 179 | 100 | 6 | 26 | 187 | 147 | 324 | 5.76e-21 | 90.9 |
| MS.gene004125.t1 | AT1G04500 | 34.078 | 179 | 100 | 6 | 26 | 187 | 156 | 333 | 6.33e-21 | 90.5 |
| MS.gene004125.t1 | AT1G04500 | 34.078 | 179 | 100 | 6 | 26 | 187 | 156 | 333 | 6.33e-21 | 90.5 |
| MS.gene004125.t1 | AT2G33350 | 42.718 | 103 | 53 | 1 | 91 | 187 | 254 | 356 | 1.23e-20 | 90.1 |
| MS.gene004125.t1 | AT2G33350 | 45.098 | 102 | 51 | 2 | 91 | 187 | 243 | 344 | 1.37e-20 | 89.7 |
| MS.gene004125.t1 | AT2G33350 | 45.098 | 102 | 51 | 2 | 91 | 187 | 254 | 355 | 1.57e-20 | 89.7 |
| MS.gene004125.t1 | AT2G33350 | 45.098 | 102 | 51 | 2 | 91 | 187 | 263 | 364 | 1.76e-20 | 89.7 |
| MS.gene004125.t1 | AT5G53420 | 35.878 | 131 | 66 | 3 | 57 | 186 | 70 | 183 | 8.36e-20 | 84.0 |
| MS.gene004125.t1 | AT5G53420 | 35.878 | 131 | 66 | 3 | 57 | 186 | 70 | 183 | 8.36e-20 | 84.0 |
| MS.gene004125.t1 | AT5G53420 | 35.878 | 131 | 66 | 3 | 57 | 186 | 70 | 183 | 8.36e-20 | 84.0 |
| MS.gene004125.t1 | AT5G53420 | 35.878 | 131 | 66 | 3 | 57 | 186 | 149 | 262 | 2.80e-19 | 84.3 |
| MS.gene004125.t1 | AT3G12890 | 57.746 | 71 | 30 | 0 | 137 | 207 | 134 | 204 | 5.78e-19 | 83.2 |
| MS.gene004125.t1 | AT4G27900 | 42.169 | 83 | 46 | 1 | 107 | 187 | 177 | 259 | 1.50e-16 | 77.0 |
| MS.gene004125.t1 | AT4G27900 | 42.169 | 83 | 46 | 1 | 107 | 187 | 177 | 259 | 1.50e-16 | 77.0 |
| MS.gene004125.t1 | AT2G24790 | 46.479 | 71 | 35 | 1 | 116 | 183 | 200 | 270 | 1.87e-13 | 68.9 |
| MS.gene004125.t1 | AT5G59990 | 42.241 | 116 | 50 | 4 | 51 | 165 | 87 | 186 | 3.97e-12 | 63.5 |
Find 60 sgRNAs with CRISPR-Local
Find 398 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTCCATCATTATTAATA+TGG | 0.215056 | 4.2:+42657370 | None:intergenic |
| TCAGCAAACAAAGTAGAAAA+AGG | 0.225080 | 4.2:+42663119 | None:intergenic |
| AGACACTATATGAGGAATTA+TGG | 0.234337 | 4.2:+42657262 | None:intergenic |
| CCGTATGTAAAGAGAGTTAA+TGG | 0.278874 | 4.2:-42659897 | MS.gene004125:intron |
| AAGATGAGGAAGAAGAGAAT+TGG | 0.325488 | 4.2:-42657341 | MS.gene004125:CDS |
| TTAATATGGCTCCATTGATT+TGG | 0.330401 | 4.2:+42657384 | None:intergenic |
| GAACTACAATAAGAAAATTA+AGG | 0.352434 | 4.2:-42659727 | MS.gene004125:intron |
| GACTCGTCATGAGCAAGATT+TGG | 0.366759 | 4.2:+42657288 | None:intergenic |
| GACACTATATGAGGAATTAT+GGG | 0.370530 | 4.2:+42657263 | None:intergenic |
| AGATGAGGAAGAAGAGAATT+GGG | 0.375443 | 4.2:-42657340 | MS.gene004125:CDS |
| GAATTGCTTGATCAAGAAAA+TGG | 0.385253 | 4.2:-42663098 | MS.gene004125:CDS |
| TTCCTCTGGGCTGTAAGGAC+TGG | 0.386798 | 4.2:+42659794 | None:intergenic |
| GACAGTAGGCCACGTATTAG+AGG | 0.396649 | 4.2:-42657444 | MS.gene004125:CDS |
| TGGTTGTGCTGCTGCATATC+AGG | 0.400086 | 4.2:+42663308 | None:intergenic |
| CAGCGGGTGCACTAGCTACT+TGG | 0.406529 | 4.2:-42663216 | MS.gene004125:CDS |
| CAGTACTGGTGATCTTGATC+AGG | 0.424707 | 4.2:-42663057 | MS.gene004125:intron |
| TTGGGAATCAGTATGTTTGT+AGG | 0.430394 | 4.2:-42657479 | MS.gene004125:intron |
| ATCAGATAGTCCTTTGTTAA+CGG | 0.432485 | 4.2:-42659853 | MS.gene004125:CDS |
| CTCAACTCTGGTGGTGGTGG+TGG | 0.443269 | 4.2:-42663257 | MS.gene004125:CDS |
| CAGCTCAACTCTGGTGGTGG+TGG | 0.445463 | 4.2:-42663260 | MS.gene004125:CDS |
| ATATGGCTCCATTGATTTGG+TGG | 0.458606 | 4.2:+42657387 | None:intergenic |
| TGGAGCCATATTAATAATGA+TGG | 0.462252 | 4.2:-42657375 | MS.gene004125:CDS |
| TAATGAATCCACCAAATCAA+TGG | 0.463510 | 4.2:-42657395 | MS.gene004125:CDS |
| AGCGGGTGCACTAGCTACTT+GGG | 0.466418 | 4.2:-42663215 | MS.gene004125:CDS |
| TTAATACAAGACACTATATG+AGG | 0.478126 | 4.2:+42657254 | None:intergenic |
| GGACAGTTTATTTGATACAT+TGG | 0.482895 | 4.2:-42657319 | MS.gene004125:CDS |
| CACTAGCTACTTGGGGTCGC+CGG | 0.492708 | 4.2:-42663207 | MS.gene004125:CDS |
| CCACAGCTCAACTCTGGTGG+TGG | 0.501156 | 4.2:-42663263 | MS.gene004125:CDS |
| TAATGCTCCTCTGCATCAAT+CGG | 0.513230 | 4.2:+42663183 | None:intergenic |
| TGGAGAGGAATTAGAAGATG+AGG | 0.517815 | 4.2:-42657355 | MS.gene004125:CDS |
| GTGCGGCGAGTTTACAGTAC+TGG | 0.524680 | 4.2:-42663071 | MS.gene004125:CDS |
| TCGGTCCCACAGCTCAACTC+TGG | 0.546806 | 4.2:-42663269 | MS.gene004125:CDS |
| CTCCTCTGCATCAATCGGTC+CGG | 0.559465 | 4.2:+42663188 | None:intergenic |
| CGCCGGACCGATTGATGCAG+AGG | 0.577048 | 4.2:-42663190 | MS.gene004125:CDS |
| TTACAGCCCAGAGGAAAAGA+AGG | 0.592097 | 4.2:-42659787 | MS.gene004125:CDS |
| ACAGTAGGCCACGTATTAGA+GGG | 0.598648 | 4.2:-42657443 | MS.gene004125:CDS |
| ATTATAATAGCTGTAGCAGC+GGG | 0.602727 | 4.2:-42663232 | MS.gene004125:CDS |
| GTCCCACAGCTCAACTCTGG+TGG | 0.604461 | 4.2:-42663266 | MS.gene004125:CDS |
| GTATGTTTGTAGGAAGACAT+TGG | 0.609319 | 4.2:-42657469 | MS.gene004125:CDS |
| GCCCAGAGGAAAAGAAGGTG+AGG | 0.612843 | 4.2:-42659782 | MS.gene004125:CDS |
| ATGCAGCAGCACAACCACCT+TGG | 0.612920 | 4.2:-42663302 | MS.gene004125:CDS |
| CACCACCAGAGTTGAGCTGT+GGG | 0.613404 | 4.2:+42663264 | None:intergenic |
| GGAAGACATTGGCAGACAGT+AGG | 0.616987 | 4.2:-42657458 | MS.gene004125:CDS |
| CCACCACCAGAGTTGAGCTG+TGG | 0.618777 | 4.2:+42663263 | None:intergenic |
| TCATGAGCAAGATTTGGAGT+AGG | 0.623530 | 4.2:+42657294 | None:intergenic |
| GCGGGTGCACTAGCTACTTG+GGG | 0.623679 | 4.2:-42663214 | MS.gene004125:CDS |
| CCATATTAATAATGATGGAG+AGG | 0.627865 | 4.2:-42657370 | MS.gene004125:CDS |
| ATAGAAGCAAGAGAAATCAG+AGG | 0.650504 | 4.2:-42659749 | MS.gene004125:CDS |
| AATTATAATAGCTGTAGCAG+CGG | 0.651255 | 4.2:-42663233 | MS.gene004125:CDS |
| ATGTTACTCTCCGTTAACAA+AGG | 0.656013 | 4.2:+42659843 | None:intergenic |
| CTGCTGCATATCAGGCGTGG+TGG | 0.663548 | 4.2:+42663316 | None:intergenic |
| ACACTATATGAGGAATTATG+GGG | 0.665187 | 4.2:+42657264 | None:intergenic |
| ATCAAGAAAATGGTGCGGTG+CGG | 0.665222 | 4.2:-42663088 | MS.gene004125:CDS |
| AGCCAGTCCTTACAGCCCAG+AGG | 0.687171 | 4.2:-42659796 | MS.gene004125:CDS |
| GTGCTGCTGCATATCAGGCG+TGG | 0.690874 | 4.2:+42663313 | None:intergenic |
| CCACCTTGGTGAATACGAGT+CGG | 0.699146 | 4.2:-42663288 | MS.gene004125:CDS |
| GCAAATCTCCCTCTAATACG+TGG | 0.703686 | 4.2:+42657435 | None:intergenic |
| GGACCGACTCGTATTCACCA+AGG | 0.731845 | 4.2:+42663285 | None:intergenic |
| CCGACTCGTATTCACCAAGG+TGG | 0.737009 | 4.2:+42663288 | None:intergenic |
| GCTTGATCAAGAAAATGGTG+CGG | 0.768844 | 4.2:-42663093 | MS.gene004125:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTAAATAAATAT+CGG | + | chr4.2:42660977-42660996 | None:intergenic | 0.0% |
| !!! | AAAAATAATACTTTTTGTTT+AGG | + | chr4.2:42660352-42660371 | None:intergenic | 10.0% |
| !!! | AAATTATTGTTCTTTTTTTT+TGG | + | chr4.2:42657713-42657732 | None:intergenic | 10.0% |
| !!! | AATCTTCTATATTTTTTTTT+TGG | - | chr4.2:42660378-42660397 | MS.gene004125:intron | 10.0% |
| !!! | ATTAAGAAAAAAATAGATTT+TGG | + | chr4.2:42658271-42658290 | None:intergenic | 10.0% |
| !!! | CATATTATTTATATGATTTT+TGG | + | chr4.2:42659835-42659854 | None:intergenic | 10.0% |
| !!! | TTTAAAACTTAAATAGTATA+TGG | - | chr4.2:42661014-42661033 | MS.gene004125:intron | 10.0% |
| !!! | TTTAAGTTTTAAAACAATAT+TGG | + | chr4.2:42661007-42661026 | None:intergenic | 10.0% |
| !! | AAAATGTATGTATTAAAATG+AGG | + | chr4.2:42660931-42660950 | None:intergenic | 15.0% |
| !! | ACTAAAATTATTGAATAAGT+AGG | - | chr4.2:42660183-42660202 | MS.gene004125:intron | 15.0% |
| !! | CAAAGTAGTATAAAAATTAT+TGG | + | chr4.2:42657690-42657709 | None:intergenic | 15.0% |
| !! | GTCATTATTATATAAAAAAG+TGG | + | chr4.2:42657603-42657622 | None:intergenic | 15.0% |
| !! | TAAAAAAACATAAGAAGAAA+AGG | - | chr4.2:42662044-42662063 | MS.gene004125:intron | 15.0% |
| !! | TAGCCAAAAATATATAATTA+GGG | + | chr4.2:42660230-42660249 | None:intergenic | 15.0% |
| !! | TATAAACTAGAATTGAAATA+TGG | - | chr4.2:42658073-42658092 | MS.gene004125:intron | 15.0% |
| !! | TCATATTTATTTAAATAGGT+CGG | + | chr4.2:42657930-42657949 | None:intergenic | 15.0% |
| !! | TTAAGAATATTATAACAACA+TGG | - | chr4.2:42662428-42662447 | MS.gene004125:intron | 15.0% |
| !! | TTTCTTTCATCTAAAAAAAA+TGG | + | chr4.2:42661278-42661297 | None:intergenic | 15.0% |
| !!! | AAAATCTATATCACTTTTTA+TGG | - | chr4.2:42659450-42659469 | MS.gene004125:intron | 15.0% |
| !!! | AAACTCATATTTTTTTTTAG+AGG | - | chr4.2:42659301-42659320 | MS.gene004125:intron | 15.0% |
| !!! | AGAACTAATTAATTTGAATA+TGG | + | chr4.2:42661955-42661974 | None:intergenic | 15.0% |
| !!! | AGTTTATTTTTGAAAAAACT+AGG | + | chr4.2:42662780-42662799 | None:intergenic | 15.0% |
| !!! | ATATTTTTTATTTTGTTGTG+TGG | - | chr4.2:42662219-42662238 | MS.gene004125:intron | 15.0% |
| !!! | CAATAATTTTAGTTTTTTTG+AGG | + | chr4.2:42660176-42660195 | None:intergenic | 15.0% |
| !!! | GACTTCAATTTTTTTTTTTT+AGG | - | chr4.2:42659181-42659200 | MS.gene004125:intron | 15.0% |
| !!! | GTTATTGTGATTTTTTTTAT+TGG | - | chr4.2:42660484-42660503 | MS.gene004125:intron | 15.0% |
| !!! | GTTTATTTTTGAAAAAACTA+GGG | + | chr4.2:42662779-42662798 | None:intergenic | 15.0% |
| !!! | TATCCCTAATTATATATTTT+TGG | - | chr4.2:42660224-42660243 | MS.gene004125:intron | 15.0% |
| !!! | TATGAGTTTATTTTTTTCAA+TGG | + | chr4.2:42659290-42659309 | None:intergenic | 15.0% |
| !!! | TATTTTTTATTTTGTTGTGT+GGG | - | chr4.2:42662220-42662239 | MS.gene004125:intron | 15.0% |
| !!! | TCAAATTGTAACTATAATTT+TGG | - | chr4.2:42662917-42662936 | MS.gene004125:intron | 15.0% |
| !!! | TTATTGGTTAAATTTACTAT+TGG | - | chr4.2:42660500-42660519 | MS.gene004125:intron | 15.0% |
| !! | AAAAAATATAAGTGTAACAG+TGG | + | chr4.2:42662208-42662227 | None:intergenic | 20.0% |
| !! | AATATAAAACCCTCATTATT+TGG | + | chr4.2:42662517-42662536 | None:intergenic | 20.0% |
| !! | ATATAAAACCCTCATTATTT+GGG | + | chr4.2:42662516-42662535 | None:intergenic | 20.0% |
| !! | ATGAAATAAGATGTAAAATG+AGG | + | chr4.2:42659404-42659423 | None:intergenic | 20.0% |
| !! | ATTCCACATAAAATTAAACT+TGG | + | chr4.2:42660255-42660274 | None:intergenic | 20.0% |
| !! | CTCTATTTAAGAAAAAAGTT+TGG | + | chr4.2:42657834-42657853 | None:intergenic | 20.0% |
| !! | GAACTACAATAAGAAAATTA+AGG | - | chr4.2:42660871-42660890 | MS.gene004125:intron | 20.0% |
| !! | GTAGCCAAAAATATATAATT+AGG | + | chr4.2:42660231-42660250 | None:intergenic | 20.0% |
| !! | GTAGTATAAAAATTATTGGA+CGG | + | chr4.2:42657686-42657705 | None:intergenic | 20.0% |
| !! | TAAAATGAATGACCATATTA+GGG | - | chr4.2:42662315-42662334 | MS.gene004125:intron | 20.0% |
| !! | TGAAGAATGAAAATTAGAAT+TGG | - | chr4.2:42662833-42662852 | MS.gene004125:intron | 20.0% |
| !! | TTAAAATGAATGACCATATT+AGG | - | chr4.2:42662314-42662333 | MS.gene004125:intron | 20.0% |
| !! | TTACATTATGTTCTTATCAA+CGG | + | chr4.2:42660579-42660598 | None:intergenic | 20.0% |
| !! | TTCCACATAAAATTAAACTT+GGG | + | chr4.2:42660254-42660273 | None:intergenic | 20.0% |
| !! | TTTAAGAAAAAAGTTTGGTT+TGG | + | chr4.2:42657829-42657848 | None:intergenic | 20.0% |
| !!! | AAAAAAGATTTTTTAGTGTG+TGG | + | chr4.2:42661491-42661510 | None:intergenic | 20.0% |
| !!! | AAAAAGATTTTTTAGTGTGT+GGG | + | chr4.2:42661490-42661509 | None:intergenic | 20.0% |
| !!! | AAAGCTAGCAATATTTTATA+AGG | + | chr4.2:42660555-42660574 | None:intergenic | 20.0% |
| !!! | AATATGGTCATTCATTTTAA+AGG | + | chr4.2:42662314-42662333 | None:intergenic | 20.0% |
| !!! | AGTTCATTTTCCTATTTTTA+CGG | + | chr4.2:42661764-42661783 | None:intergenic | 20.0% |
| !!! | ATAGTATATGTGATTTGTTT+TGG | + | chr4.2:42661246-42661265 | None:intergenic | 20.0% |
| !!! | ATATTTTTGTGTTATAAGAG+AGG | - | chr4.2:42662167-42662186 | MS.gene004125:intron | 20.0% |
| !!! | ATCTTAGTTTTGTTTTCTTT+TGG | - | chr4.2:42663100-42663119 | MS.gene004125:CDS | 20.0% |
| !!! | CAAAAACAAAATTTGTTTCA+TGG | + | chr4.2:42662247-42662266 | None:intergenic | 20.0% |
| !!! | CAATTTTTTCCTGTATTTTT+TGG | + | chr4.2:42662345-42662364 | None:intergenic | 20.0% |
| !!! | GATGAAATAAACTTTTAAAC+AGG | - | chr4.2:42658569-42658588 | MS.gene004125:intron | 20.0% |
| !!! | TAGTATATGTGATTTGTTTT+GGG | + | chr4.2:42661245-42661264 | None:intergenic | 20.0% |
| !!! | TATAAAAAAGTGGATTTTAG+AGG | + | chr4.2:42657593-42657612 | None:intergenic | 20.0% |
| !!! | TATTCTTTTGATTTTTTGCA+TGG | - | chr4.2:42662866-42662885 | MS.gene004125:intron | 20.0% |
| !!! | TATTTTTGTGTTATAAGAGA+GGG | - | chr4.2:42662168-42662187 | MS.gene004125:intron | 20.0% |
| !!! | TCTATTTTTTTCTTAATGCA+AGG | - | chr4.2:42658274-42658293 | MS.gene004125:intron | 20.0% |
| !!! | TCTTAGTTTTGTTTTCTTTT+GGG | - | chr4.2:42663101-42663120 | MS.gene004125:CDS | 20.0% |
| !!! | TGAAATAGATTTTCATTTTG+AGG | + | chr4.2:42658238-42658257 | None:intergenic | 20.0% |
| !!! | TGTTTGTTTTGGATTTTTTT+TGG | - | chr4.2:42658112-42658131 | MS.gene004125:intron | 20.0% |
| !!! | TTTTCAAAAATAAACTGAAG+TGG | - | chr4.2:42662784-42662803 | MS.gene004125:intron | 20.0% |
| !!! | TTTTCATAAGCTTACTTTTT+AGG | + | chr4.2:42658635-42658654 | None:intergenic | 20.0% |
| ! | AAAAAAAAGCGATGATGAAA+TGG | + | chr4.2:42658917-42658936 | None:intergenic | 25.0% |
| ! | AAAAAAAGCGATGATGAAAT+GGG | + | chr4.2:42658916-42658935 | None:intergenic | 25.0% |
| ! | AAAATGAATGACCATATTAG+GGG | - | chr4.2:42662316-42662335 | MS.gene004125:intron | 25.0% |
| ! | AAATGGAAACAGTAAAAAGT+TGG | - | chr4.2:42662748-42662767 | MS.gene004125:intron | 25.0% |
| ! | AACTTAAATAGTATATGGTC+CGG | - | chr4.2:42661019-42661038 | MS.gene004125:intron | 25.0% |
| ! | ACTCCATTAAAGAAAATGTT+TGG | + | chr4.2:42659658-42659677 | None:intergenic | 25.0% |
| ! | AGAAAAGGAAAAAACAATGA+AGG | - | chr4.2:42662059-42662078 | MS.gene004125:intron | 25.0% |
| ! | AGATACTTATAAGATCAGTT+TGG | + | chr4.2:42659376-42659395 | None:intergenic | 25.0% |
| ! | ATTGTCGCAAAAGATAATAA+AGG | + | chr4.2:42660034-42660053 | None:intergenic | 25.0% |
| ! | CACTTATAAAAAACTTGAGT+TGG | - | chr4.2:42661204-42661223 | MS.gene004125:intron | 25.0% |
| ! | CATGAAGAAAAATTGTTTCA+TGG | - | chr4.2:42661463-42661482 | MS.gene004125:intron | 25.0% |
| ! | CTAATTCTTGTCTACAAAAT+TGG | + | chr4.2:42658956-42658975 | None:intergenic | 25.0% |
| ! | CTACTTTAAACAATTTAAGC+TGG | - | chr4.2:42661066-42661085 | MS.gene004125:intron | 25.0% |
| ! | GAAATATGGTACAACATATA+GGG | - | chr4.2:42658087-42658106 | MS.gene004125:intron | 25.0% |
| ! | TATAAAACCCTCATTATTTG+GGG | + | chr4.2:42662515-42662534 | None:intergenic | 25.0% |
| ! | TCCACATAAAATTAAACTTG+GGG | + | chr4.2:42660253-42660272 | None:intergenic | 25.0% |
| ! | TCTAAAAAAAATGGCATACT+TGG | + | chr4.2:42661269-42661288 | None:intergenic | 25.0% |
| ! | TCTTTGATCTAGAAGTTTAT+GGG | + | chr4.2:42661680-42661699 | None:intergenic | 25.0% |
| ! | TGAAATATGGTACAACATAT+AGG | - | chr4.2:42658086-42658105 | MS.gene004125:intron | 25.0% |
| ! | TTAATACAAGACACTATATG+AGG | + | chr4.2:42663347-42663366 | None:intergenic | 25.0% |
| ! | TTCTTAAATAGAGAAGACTT+TGG | - | chr4.2:42657841-42657860 | MS.gene004125:intron | 25.0% |
| ! | TTCTTTCTTCTTAAACAACT+AGG | - | chr4.2:42658984-42659003 | MS.gene004125:intron | 25.0% |
| ! | TTCTTTGATCTAGAAGTTTA+TGG | + | chr4.2:42661681-42661700 | None:intergenic | 25.0% |
| !! | AAAATGATGGTTCTATACTT+GGG | + | chr4.2:42661567-42661586 | None:intergenic | 25.0% |
| !! | ACAAAATTTTCTCCATTCAT+TGG | + | chr4.2:42662669-42662688 | None:intergenic | 25.0% |
| !! | ACAATTTGATATTTTCTGTG+TGG | + | chr4.2:42662906-42662925 | None:intergenic | 25.0% |
| !! | ATGTGGAATAAATTTTTGTC+TGG | - | chr4.2:42660266-42660285 | MS.gene004125:intron | 25.0% |
| !! | CATCTAAGATTGAAAGTAAA+TGG | - | chr4.2:42662731-42662750 | MS.gene004125:intron | 25.0% |
| !! | CATTTTCTTTAATGGAGTAA+TGG | - | chr4.2:42659660-42659679 | MS.gene004125:intron | 25.0% |
| !! | TAAAATGATGGTTCTATACT+TGG | + | chr4.2:42661568-42661587 | None:intergenic | 25.0% |
| !! | TTCTTTTTCCTGTTATATTG+TGG | + | chr4.2:42661842-42661861 | None:intergenic | 25.0% |
| !! | TTTTGTAGACAAGAATTAGA+TGG | - | chr4.2:42658957-42658976 | MS.gene004125:intron | 25.0% |
| !!! | AATAAATTTTTGTCTGGCTT+AGG | - | chr4.2:42660272-42660291 | MS.gene004125:intron | 25.0% |
| !!! | AATGTCTTTTATTTTCTTCC+AGG | + | chr4.2:42659690-42659709 | None:intergenic | 25.0% |
| !!! | ACAATATGTTGTTGTTGTTT+TGG | - | chr4.2:42660402-42660421 | MS.gene004125:intron | 25.0% |
| !!! | ATAAAAAACTTGAGTTGGAA+AGG | - | chr4.2:42661209-42661228 | MS.gene004125:intron | 25.0% |
| !!! | ATGTCTTTTATTTTCTTCCA+GGG | + | chr4.2:42659689-42659708 | None:intergenic | 25.0% |
| !!! | CAACTCAAGTTTTTTATAAG+TGG | + | chr4.2:42661206-42661225 | None:intergenic | 25.0% |
| !!! | CATATTTTTTTTTAGAGGAG+TGG | - | chr4.2:42659306-42659325 | MS.gene004125:intron | 25.0% |
| !!! | CTATTGAAAGTCATTTTAAG+GGG | - | chr4.2:42662276-42662295 | MS.gene004125:intron | 25.0% |
| !!! | GAGTCATTTTTCATTTATGT+AGG | - | chr4.2:42658802-42658821 | MS.gene004125:intron | 25.0% |
| !!! | GATTTGTTACTGTACATTAT+TGG | + | chr4.2:42663051-42663070 | None:intergenic | 25.0% |
| !!! | GCTATTGAAAGTCATTTTAA+GGG | - | chr4.2:42662275-42662294 | MS.gene004125:intron | 25.0% |
| !!! | GTAGTTTATTTGTTGCTTTT+TGG | + | chr4.2:42661817-42661836 | None:intergenic | 25.0% |
| !!! | TGCTATTGAAAGTCATTTTA+AGG | - | chr4.2:42662274-42662293 | MS.gene004125:intron | 25.0% |
| !!! | TTTTTAGAGAAGTTGACTAT+GGG | + | chr4.2:42658453-42658472 | None:intergenic | 25.0% |
| AAAAAAGCGATGATGAAATG+GGG | + | chr4.2:42658915-42658934 | None:intergenic | 30.0% | |
| AAACTCGCAAACAAAACATT+AGG | + | chr4.2:42661324-42661343 | None:intergenic | 30.0% | |
| AAAGAAAGAGAATAAGAACC+AGG | - | chr4.2:42660113-42660132 | MS.gene004125:intron | 30.0% | |
| AACCAAAATTGTCTACGATT+CGG | + | chr4.2:42661122-42661141 | None:intergenic | 30.0% | |
| AAGAAAGAGAATAAGAACCA+GGG | - | chr4.2:42660114-42660133 | MS.gene004125:intron | 30.0% | |
| AATTATAATAGCTGTAGCAG+CGG | - | chr4.2:42657365-42657384 | MS.gene004125:CDS | 30.0% | |
| ACACTATATGAGGAATTATG+GGG | + | chr4.2:42663337-42663356 | None:intergenic | 30.0% | |
| ACATCTTATATCATTGAGTG+TGG | - | chr4.2:42659772-42659791 | MS.gene004125:CDS | 30.0% | |
| ACCTCCATATTAACAAAATC+CGG | - | chr4.2:42658851-42658870 | MS.gene004125:intron | 30.0% | |
| AGACACTATATGAGGAATTA+TGG | + | chr4.2:42663339-42663358 | None:intergenic | 30.0% | |
| AGGAGTTAACAAAAGATGAA+AGG | - | chr4.2:42659329-42659348 | MS.gene004125:intron | 30.0% | |
| ATCAGATAGTCCTTTGTTAA+CGG | - | chr4.2:42660745-42660764 | MS.gene004125:intron | 30.0% | |
| ATGTTGAATCTAATGCAAGT+AGG | - | chr4.2:42657744-42657763 | MS.gene004125:intron | 30.0% | |
| ATTGGAAGAGATAACTTTGA+GGG | + | chr4.2:42662556-42662575 | None:intergenic | 30.0% | |
| CAATATGTTGCCGTAAAAAT+AGG | - | chr4.2:42661751-42661770 | MS.gene004125:intron | 30.0% | |
| CACTCAATGATATAAGATGT+AGG | + | chr4.2:42659772-42659791 | None:intergenic | 30.0% | |
| CAGCAAACAAAGTAGAAAAA+GGG | + | chr4.2:42657481-42657500 | None:intergenic | 30.0% | |
| CCATTAAAGAAAATGTTTGG+TGG | + | chr4.2:42659655-42659674 | None:intergenic | 30.0% | |
| CCATTAACTCTCTTTACATA+CGG | + | chr4.2:42660704-42660723 | None:intergenic | 30.0% | |
| CCTCTCCATCATTATTAATA+TGG | + | chr4.2:42663231-42663250 | None:intergenic | 30.0% | |
| CTTATAAGATCAGTTTGGAA+CGG | + | chr4.2:42659371-42659390 | None:intergenic | 30.0% | |
| CTTCATGTTCCTAAATTTCT+TGG | - | chr4.2:42661895-42661914 | MS.gene004125:intron | 30.0% | |
| GAATTGCTTGATCAAGAAAA+TGG | - | chr4.2:42657500-42657519 | MS.gene004125:intron | 30.0% | |
| GACACTATATGAGGAATTAT+GGG | + | chr4.2:42663338-42663357 | None:intergenic | 30.0% | |
| GAGGAAGATGATATTGTAAA+CGG | + | chr4.2:42657574-42657593 | None:intergenic | 30.0% | |
| GAGTTTGGAGATAAAAAGAA+GGG | + | chr4.2:42662623-42662642 | None:intergenic | 30.0% | |
| GATAAGTTAGTTGAACTGTA+TGG | - | chr4.2:42661146-42661165 | MS.gene004125:intron | 30.0% | |
| GGACAGTTTATTTGATACAT+TGG | - | chr4.2:42663279-42663298 | MS.gene004125:CDS | 30.0% | |
| GGAGTTAACAAAAGATGAAA+GGG | - | chr4.2:42659330-42659349 | MS.gene004125:intron | 30.0% | |
| GGGGAACTAAAAAATTGTAT+TGG | + | chr4.2:42662496-42662515 | None:intergenic | 30.0% | |
| GTGACAATGTGTTTATAAGT+GGG | + | chr4.2:42659596-42659615 | None:intergenic | 30.0% | |
| TAAAATGAAGGACCATACTA+GGG | + | chr4.2:42661397-42661416 | None:intergenic | 30.0% | |
| TAATATGGAGGTTAAAATCG+TGG | + | chr4.2:42658843-42658862 | None:intergenic | 30.0% | |
| TAATGAATCCACCAAATCAA+TGG | - | chr4.2:42663203-42663222 | MS.gene004125:CDS | 30.0% | |
| TCAGCAAACAAAGTAGAAAA+AGG | + | chr4.2:42657482-42657501 | None:intergenic | 30.0% | |
| TCCAACAATGTCTTTACTTA+GGG | + | chr4.2:42661713-42661732 | None:intergenic | 30.0% | |
| TGACAATGTGTTTATAAGTG+GGG | + | chr4.2:42659595-42659614 | None:intergenic | 30.0% | |
| TGGAGCCATATTAATAATGA+TGG | - | chr4.2:42663223-42663242 | MS.gene004125:CDS | 30.0% | |
| TGTGACAATGTGTTTATAAG+TGG | + | chr4.2:42659597-42659616 | None:intergenic | 30.0% | |
| TGTTGAATCTAATGCAAGTA+GGG | - | chr4.2:42657745-42657764 | MS.gene004125:intron | 30.0% | |
| TTAAAATGAAGGACCATACT+AGG | + | chr4.2:42661398-42661417 | None:intergenic | 30.0% | |
| TTCATGAAACCTGTAATTGA+AGG | + | chr4.2:42661449-42661468 | None:intergenic | 30.0% | |
| TTCTTCTTAAACAACTAGGA+AGG | - | chr4.2:42658988-42659007 | MS.gene004125:intron | 30.0% | |
| ! | AAACTTTTAAACAGGTTAGC+AGG | - | chr4.2:42658577-42658596 | MS.gene004125:intron | 30.0% |
| ! | AAATGATGGTTCTATACTTG+GGG | + | chr4.2:42661566-42661585 | None:intergenic | 30.0% |
| ! | AAGTTTATGGGTTAAATGGA+GGG | + | chr4.2:42661668-42661687 | None:intergenic | 30.0% |
| ! | AGTATGGTCCTTCATTTTAA+AGG | - | chr4.2:42661398-42661417 | MS.gene004125:intron | 30.0% |
| ! | ATGGAGAAAATTTTGTGAAG+AGG | - | chr4.2:42662673-42662692 | MS.gene004125:intron | 30.0% |
| ! | CCACCAAACATTTTCTTTAA+TGG | - | chr4.2:42659652-42659671 | MS.gene004125:intron | 30.0% |
| ! | CCATATTAATAATGATGGAG+AGG | - | chr4.2:42663228-42663247 | MS.gene004125:CDS | 30.0% |
| ! | CTAGAAGTTTATGGGTTAAA+TGG | + | chr4.2:42661672-42661691 | None:intergenic | 30.0% |
| ! | GATCATTCAAAAAGCCTTTT+AGG | - | chr4.2:42657904-42657923 | MS.gene004125:intron | 30.0% |
| ! | GCTAGCAATATTTTATAAGG+TGG | + | chr4.2:42660552-42660571 | None:intergenic | 30.0% |
| ! | TTAATATGGCTCCATTGATT+TGG | + | chr4.2:42663217-42663236 | None:intergenic | 30.0% |
| ! | TTTAGTTCCCCAAATAATGA+GGG | - | chr4.2:42662505-42662524 | MS.gene004125:intron | 30.0% |
| ! | TTTTTCCTGTTATATTGTGG+TGG | + | chr4.2:42661839-42661858 | None:intergenic | 30.0% |
| !! | ACCCCAAGTTTAATTTTATG+TGG | - | chr4.2:42660249-42660268 | MS.gene004125:intron | 30.0% |
| !! | GTGTTAATCCTTTAGTTTGT+GGG | + | chr4.2:42660330-42660349 | None:intergenic | 30.0% |
| !! | GTTTTTAGAGAAGTTGACTA+TGG | + | chr4.2:42658454-42658473 | None:intergenic | 30.0% |
| !!! | ACACAATGATTTTAACTCTC+CGG | + | chr4.2:42658873-42658892 | None:intergenic | 30.0% |
| !!! | ATTTTTTTTTAGAGGAGTGG+AGG | - | chr4.2:42659309-42659328 | MS.gene004125:intron | 30.0% |
| !!! | CTTTTTTTAATGTGCAGCAT+TGG | - | chr4.2:42661504-42661523 | MS.gene004125:intron | 30.0% |
| !!! | GGACTTGGTTTTTAAAACAT+TGG | - | chr4.2:42661171-42661190 | MS.gene004125:intron | 30.0% |
| !!! | TAATGTTTTGTTTGCGAGTT+TGG | - | chr4.2:42661323-42661342 | MS.gene004125:intron | 30.0% |
| !!! | TTATTTGTTGCTTTTTGGTG+TGG | + | chr4.2:42661812-42661831 | None:intergenic | 30.0% |
| !!! | TTTTAGTTCCCCAAATAATG+AGG | - | chr4.2:42662504-42662523 | MS.gene004125:intron | 30.0% |
| AAAATGAAGGACCATACTAG+GGG | + | chr4.2:42661396-42661415 | None:intergenic | 35.0% | |
| AAACTCGCAAACAAAACCTA+AGG | - | chr4.2:42662637-42662656 | MS.gene004125:intron | 35.0% | |
| AACGCGTTTAAATTCCAAGT+TGG | - | chr4.2:42658778-42658797 | MS.gene004125:intron | 35.0% | |
| AACTACCACCACAATATAAC+AGG | - | chr4.2:42661831-42661850 | MS.gene004125:intron | 35.0% | |
| AACTCGCAAACAAAACCTAA+GGG | - | chr4.2:42662638-42662657 | MS.gene004125:intron | 35.0% | |
| AAGATGAGGAAGAAGAGAAT+TGG | - | chr4.2:42663257-42663276 | MS.gene004125:CDS | 35.0% | |
| AATCTAATGCAAGTAGGGAT+GGG | - | chr4.2:42657750-42657769 | MS.gene004125:intron | 35.0% | |
| AATTCAACGTCTTTAACCGT+CGG | + | chr4.2:42659090-42659109 | None:intergenic | 35.0% | |
| AGAAAGAGAATAAGAACCAG+GGG | - | chr4.2:42660115-42660134 | MS.gene004125:intron | 35.0% | |
| AGAAGAAGAAGACAGTAGTA+GGG | + | chr4.2:42661617-42661636 | None:intergenic | 35.0% | |
| AGATGAGGAAGAAGAGAATT+GGG | - | chr4.2:42663258-42663277 | MS.gene004125:CDS | 35.0% | |
| AGTTAGTTGAACTGTATGGT+TGG | - | chr4.2:42661150-42661169 | MS.gene004125:intron | 35.0% | |
| ATAGAAGCAAGAGAAATCAG+AGG | - | chr4.2:42660849-42660868 | MS.gene004125:intron | 35.0% | |
| ATGTGTGTGATGTTTCATGT+CGG | - | chr4.2:42659960-42659979 | MS.gene004125:intron | 35.0% | |
| ATGTTACTCTCCGTTAACAA+AGG | + | chr4.2:42660758-42660777 | None:intergenic | 35.0% | |
| ATTATAATAGCTGTAGCAGC+GGG | - | chr4.2:42657366-42657385 | MS.gene004125:CDS | 35.0% | |
| CAAACAAAGTAGAAAAAGGG+CGG | + | chr4.2:42657478-42657497 | None:intergenic | 35.0% | |
| CATTGGAAGAGATAACTTTG+AGG | + | chr4.2:42662557-42662576 | None:intergenic | 35.0% | |
| CATTGTTAAGAGTCCTACAT+CGG | + | chr4.2:42659631-42659650 | None:intergenic | 35.0% | |
| CCGTATGTAAAGAGAGTTAA+TGG | - | chr4.2:42660701-42660720 | MS.gene004125:intron | 35.0% | |
| CGAGTTTGGAGATAAAAAGA+AGG | + | chr4.2:42662624-42662643 | None:intergenic | 35.0% | |
| CTAAATTTCTTGGATGCAGA+CGG | - | chr4.2:42661905-42661924 | MS.gene004125:intron | 35.0% | |
| CTCCAACAATGTCTTTACTT+AGG | + | chr4.2:42661714-42661733 | None:intergenic | 35.0% | |
| GACAATGTGTTTATAAGTGG+GGG | + | chr4.2:42659594-42659613 | None:intergenic | 35.0% | |
| GGAAAAAATGAAGGAGTAAG+TGG | + | chr4.2:42662593-42662612 | None:intergenic | 35.0% | |
| GTAGTTGAACCATAACTTAG+AGG | + | chr4.2:42661050-42661069 | None:intergenic | 35.0% | |
| GTATGTTTGTAGGAAGACAT+TGG | - | chr4.2:42663129-42663148 | MS.gene004125:CDS | 35.0% | |
| GTCTCTTAGAAATCATGGTT+GGG | - | chr4.2:42659526-42659545 | MS.gene004125:intron | 35.0% | |
| GTGGAAGAAATAGAAGACAT+TGG | + | chr4.2:42662574-42662593 | None:intergenic | 35.0% | |
| TAAAAATTATTGGACGGTCC+CGG | + | chr4.2:42657680-42657699 | None:intergenic | 35.0% | |
| TAAATTTCTTGGATGCAGAC+GGG | - | chr4.2:42661906-42661925 | MS.gene004125:intron | 35.0% | |
| TAGAAGAAGAAGACAGTAGT+AGG | + | chr4.2:42661618-42661637 | None:intergenic | 35.0% | |
| TAGACTATGCACAACAATTG+AGG | + | chr4.2:42659216-42659235 | None:intergenic | 35.0% | |
| TCAAAGTGACCTTCAATTAC+AGG | - | chr4.2:42661437-42661456 | MS.gene004125:intron | 35.0% | |
| TCCCTAAGTAAAGACATTGT+TGG | - | chr4.2:42661709-42661728 | MS.gene004125:intron | 35.0% | |
| TGAAAAATGACTCTCCAACT+TGG | + | chr4.2:42658795-42658814 | None:intergenic | 35.0% | |
| TGCAATATTTCACAAGTGTG+AGG | - | chr4.2:42659017-42659036 | MS.gene004125:intron | 35.0% | |
| TTGGAGATAAAAAGAAGGGA+GGG | + | chr4.2:42662619-42662638 | None:intergenic | 35.0% | |
| TTGGGAATCAGTATGTTTGT+AGG | - | chr4.2:42663119-42663138 | MS.gene004125:CDS | 35.0% | |
| TTGTGCATAGTCTACTAGTA+GGG | - | chr4.2:42659222-42659241 | MS.gene004125:intron | 35.0% | |
| TTTAAATAGGTCGGCCTAAA+AGG | + | chr4.2:42657921-42657940 | None:intergenic | 35.0% | |
| TTTGGAGATAAAAAGAAGGG+AGG | + | chr4.2:42662620-42662639 | None:intergenic | 35.0% | |
| ! | AAGGCTTTTTGAATGATCTG+TGG | + | chr4.2:42657902-42657921 | None:intergenic | 35.0% |
| ! | AGTTTATGGGTTAAATGGAG+GGG | + | chr4.2:42661667-42661686 | None:intergenic | 35.0% |
| ! | CATATAGGGCATGTTTGTTT+TGG | - | chr4.2:42658101-42658120 | MS.gene004125:intron | 35.0% |
| ! | CTCTCCGGATTTTGTTAATA+TGG | + | chr4.2:42658858-42658877 | None:intergenic | 35.0% |
| ! | GAAGTTTATGGGTTAAATGG+AGG | + | chr4.2:42661669-42661688 | None:intergenic | 35.0% |
| ! | GTTCTATACTTGGGGATTTT+AGG | + | chr4.2:42661558-42661577 | None:intergenic | 35.0% |
| ! | TAATTGAAGGTCACTTTGAG+AGG | + | chr4.2:42661436-42661455 | None:intergenic | 35.0% |
| ! | TCCGGATTTTGTTAATATGG+AGG | + | chr4.2:42658855-42658874 | None:intergenic | 35.0% |
| ! | TTTTGTCTCCCACAAACTAA+AGG | - | chr4.2:42660319-42660338 | MS.gene004125:intron | 35.0% |
| ! | TTTTTGAATGATCTGTGGCT+TGG | + | chr4.2:42657897-42657916 | None:intergenic | 35.0% |
| !! | AATTTTGGTGTGACACTTTG+TGG | - | chr4.2:42662932-42662951 | MS.gene004125:intron | 35.0% |
| !! | GGTGTTAATCCTTTAGTTTG+TGG | + | chr4.2:42660331-42660350 | None:intergenic | 35.0% |
| !! | TCATTTTAAAGGTCCACTCA+TGG | + | chr4.2:42662303-42662322 | None:intergenic | 35.0% |
| !!! | CAGTTTTTTTGACAGAGATC+TGG | + | chr4.2:42659861-42659880 | None:intergenic | 35.0% |
| !!! | GTTTTTTTCTCTCCTTGAGA+CGG | + | chr4.2:42659802-42659821 | None:intergenic | 35.0% |
| !!! | TCGTAGACAATTTTGGTTCA+TGG | - | chr4.2:42661124-42661143 | MS.gene004125:intron | 35.0% |
| !!! | TTACTTTTTAGGCTTGAGTC+TGG | + | chr4.2:42658624-42658643 | None:intergenic | 35.0% |
| !!! | TTAGGTTTTGTTTGCGAGTT+TGG | + | chr4.2:42662638-42662657 | None:intergenic | 35.0% |
| !!! | TTTTTTGGAAGCCCCTAATA+TGG | + | chr4.2:42662330-42662349 | None:intergenic | 35.0% |
| AAAAATTATTGGACGGTCCC+GGG | + | chr4.2:42657679-42657698 | None:intergenic | 40.0% | |
| AAACGCGTTCCTAATATCTG+AGG | + | chr4.2:42658767-42658786 | None:intergenic | 40.0% | |
| AGTCCAAACCCTTGGATTTA+GGG | + | chr4.2:42658744-42658763 | None:intergenic | 40.0% | |
| CATTCATTGGAGTTTCCCTT+AGG | + | chr4.2:42662656-42662675 | None:intergenic | 40.0% | |
| CGTCTCTTAGAAATCATGGT+TGG | - | chr4.2:42659525-42659544 | MS.gene004125:intron | 40.0% | |
| CGTCTGCATCCAAGAAATTT+AGG | + | chr4.2:42661907-42661926 | None:intergenic | 40.0% | |
| CTAAGGGAAACTCCAATGAA+TGG | - | chr4.2:42662654-42662673 | MS.gene004125:intron | 40.0% | |
| GAATCTAATGCAAGTAGGGA+TGG | - | chr4.2:42657749-42657768 | MS.gene004125:intron | 40.0% | |
| GAGACGTCTCTTAGAAATCA+TGG | - | chr4.2:42659521-42659540 | MS.gene004125:intron | 40.0% | |
| GATAAAAAGAAGGGAGGGTT+TGG | + | chr4.2:42662614-42662633 | None:intergenic | 40.0% | |
| GCTTAGGCCTTCAAACAAAT+TGG | - | chr4.2:42658667-42658686 | MS.gene004125:intron | 40.0% | |
| GCTTGATCAAGAAAATGGTG+CGG | - | chr4.2:42657505-42657524 | MS.gene004125:intron | 40.0% | |
| GGAGGGTTTGGAAAAAATGA+AGG | + | chr4.2:42662602-42662621 | None:intergenic | 40.0% | |
| GTTGTGCATAGTCTACTAGT+AGG | - | chr4.2:42659221-42659240 | MS.gene004125:intron | 40.0% | |
| GTTTGGACTCCTCAGATATT+AGG | - | chr4.2:42658755-42658774 | MS.gene004125:intron | 40.0% | |
| TAATGCTCCTCTGCATCAAT+CGG | + | chr4.2:42657418-42657437 | None:intergenic | 40.0% | |
| TAGGGGCTTCCAAAAAATAC+AGG | - | chr4.2:42662333-42662352 | MS.gene004125:intron | 40.0% | |
| TGGAGAGGAATTAGAAGATG+AGG | - | chr4.2:42663243-42663262 | MS.gene004125:CDS | 40.0% | |
| TGTGTGTGATGTTTCATGTC+GGG | - | chr4.2:42659961-42659980 | MS.gene004125:intron | 40.0% | |
| TTGAACTGTATGGTTGGACT+TGG | - | chr4.2:42661156-42661175 | MS.gene004125:intron | 40.0% | |
| ! | AGCCGAATCGTAGACAATTT+TGG | - | chr4.2:42661117-42661136 | MS.gene004125:intron | 40.0% |
| ! | CATCATTCTTTTGCAGAGAG+TGG | + | chr4.2:42657445-42657464 | None:intergenic | 40.0% |
| ! | GTCTACAATTTTATCGCCGA+CGG | - | chr4.2:42659071-42659090 | MS.gene004125:intron | 40.0% |
| ! | TCATGAGCAAGATTTGGAGT+AGG | + | chr4.2:42663307-42663326 | None:intergenic | 40.0% |
| ! | TTGCTGTGTTGTTCTCTTTG+TGG | + | chr4.2:42662087-42662106 | None:intergenic | 40.0% |
| !! | ATATGGCTCCATTGATTTGG+TGG | + | chr4.2:42663214-42663233 | None:intergenic | 40.0% |
| !! | GAAAAAAGTTTGGTTTGGCC+TGG | + | chr4.2:42657824-42657843 | None:intergenic | 40.0% |
| !! | TGGGTGGACCTTTAAAATGA+AGG | + | chr4.2:42661409-42661428 | None:intergenic | 40.0% |
| !! | TTTTGTTTGCGAGTTTGGAG+GGG | - | chr4.2:42661328-42661347 | MS.gene004125:intron | 40.0% |
| !!! | GTTTTGTTTGCGAGTTTGGA+GGG | - | chr4.2:42661327-42661346 | MS.gene004125:intron | 40.0% |
| !!! | TGTTTTGTTTGCGAGTTTGG+AGG | - | chr4.2:42661326-42661345 | MS.gene004125:intron | 40.0% |
| AAACCCTTGGATTTAGGGGT+GGG | + | chr4.2:42658739-42658758 | None:intergenic | 45.0% | |
| AAATACGGAAGCCCCTAGTA+TGG | - | chr4.2:42661382-42661401 | MS.gene004125:intron | 45.0% | |
| AAGAGAATAAGAACCAGGGG+CGG | - | chr4.2:42660118-42660137 | MS.gene004125:intron | 45.0% | |
| AAGGAAGGAAGGAAGGACTT+TGG | - | chr4.2:42661352-42661371 | MS.gene004125:intron | 45.0% | |
| ACAAAGTAGAAAAAGGGCGG+TGG | + | chr4.2:42657475-42657494 | None:intergenic | 45.0% | |
| ACAGTAGGCCACGTATTAGA+GGG | - | chr4.2:42663155-42663174 | MS.gene004125:CDS | 45.0% | |
| AGCTAGACATCCGTTTGTAG+AGG | - | chr4.2:42657641-42657660 | MS.gene004125:intron | 45.0% | |
| AGGAAGGAAGGAAGGACTTT+GGG | - | chr4.2:42661353-42661372 | MS.gene004125:intron | 45.0% | |
| AGGCCTTCAAACAAATTGGC+AGG | - | chr4.2:42658671-42658690 | MS.gene004125:intron | 45.0% | |
| ATCAAGAAAATGGTGCGGTG+CGG | - | chr4.2:42657510-42657529 | MS.gene004125:intron | 45.0% | |
| ATGCAAGTAGGGATGGGAAT+AGG | - | chr4.2:42657756-42657775 | MS.gene004125:intron | 45.0% | |
| ATTCCCACCCCTAAATCCAA+GGG | - | chr4.2:42658733-42658752 | MS.gene004125:intron | 45.0% | |
| CACCATCTCATATCCGATGT+AGG | - | chr4.2:42659615-42659634 | MS.gene004125:intron | 45.0% | |
| CAGAGGGAGGAGTAAAATGA+TGG | + | chr4.2:42661580-42661599 | None:intergenic | 45.0% | |
| CGAATCTACGCCTCTACAAA+CGG | + | chr4.2:42657654-42657673 | None:intergenic | 45.0% | |
| CGATGAAGAGAGAGAAAGAG+AGG | - | chr4.2:42662122-42662141 | MS.gene004125:intron | 45.0% | |
| CTAACACAACCCCACAAAAC+TGG | - | chr4.2:42659550-42659569 | MS.gene004125:intron | 45.0% | |
| GACTCGTCATGAGCAAGATT+TGG | + | chr4.2:42663313-42663332 | None:intergenic | 45.0% | |
| GAGTCCAAACCCTTGGATTT+AGG | + | chr4.2:42658745-42658764 | None:intergenic | 45.0% | |
| GCAAATCTCCCTCTAATACG+TGG | + | chr4.2:42663166-42663185 | None:intergenic | 45.0% | |
| GCCACGCGTTTATAGAGTTT+GGG | + | chr4.2:42661933-42661952 | None:intergenic | 45.0% | |
| GGATGAACAGAGAAGACAGA+GGG | + | chr4.2:42661596-42661615 | None:intergenic | 45.0% | |
| GTCCAAACCCTTGGATTTAG+GGG | + | chr4.2:42658743-42658762 | None:intergenic | 45.0% | |
| GTCCTACATCGGATATGAGA+TGG | + | chr4.2:42659620-42659639 | None:intergenic | 45.0% | |
| GTGTGTGATGTTTCATGTCG+GGG | - | chr4.2:42659962-42659981 | MS.gene004125:intron | 45.0% | |
| TATTCCCACCCCTAAATCCA+AGG | - | chr4.2:42658732-42658751 | MS.gene004125:intron | 45.0% | |
| TCCCAAACTCTATAAACGCG+TGG | - | chr4.2:42661929-42661948 | MS.gene004125:intron | 45.0% | |
| TGAAGAGAGAGAAAGAGAGG+AGG | - | chr4.2:42662125-42662144 | MS.gene004125:intron | 45.0% | |
| TGTGTGATGTTTCATGTCGG+GGG | - | chr4.2:42659963-42659982 | MS.gene004125:intron | 45.0% | |
| TTACAGCCCAGAGGAAAAGA+AGG | - | chr4.2:42660811-42660830 | MS.gene004125:intron | 45.0% | |
| TTGGATTTAGGGGTGGGAAT+AGG | + | chr4.2:42658733-42658752 | None:intergenic | 45.0% | |
| TTTGCATGGTAGAGTCTTGC+AGG | - | chr4.2:42662880-42662899 | MS.gene004125:intron | 45.0% | |
| TTTGTTTGAAGGCCTAAGCC+TGG | + | chr4.2:42658666-42658685 | None:intergenic | 45.0% | |
| ! | AGGTCACTTTGAGAGGAGTA+TGG | + | chr4.2:42661429-42661448 | None:intergenic | 45.0% |
| ! | ATCCTCACCTTCTTTTCCTC+TGG | + | chr4.2:42660821-42660840 | None:intergenic | 45.0% |
| ! | GACTTTGGGGGTGAGAAATA+CGG | - | chr4.2:42661367-42661386 | MS.gene004125:intron | 45.0% |
| ! | GGTCACTTTGAGAGGAGTAT+GGG | + | chr4.2:42661428-42661447 | None:intergenic | 45.0% |
| ! | TCCTCACCTTCTTTTCCTCT+GGG | + | chr4.2:42660820-42660839 | None:intergenic | 45.0% |
| ! | TGGCCTGCCAATTTGTTTGA+AGG | + | chr4.2:42658677-42658696 | None:intergenic | 45.0% |
| ! | TTCTTTTCCTCTGGGCTGTA+AGG | + | chr4.2:42660812-42660831 | None:intergenic | 45.0% |
| !! | ACCTCACAAGCCAGTTTTGT+GGG | + | chr4.2:42659563-42659582 | None:intergenic | 45.0% |
| !! | CAGTACTGGTGATCTTGATC+AGG | - | chr4.2:42657541-42657560 | MS.gene004125:intron | 45.0% |
| !! | CATTTTAAGGGGACCATGAG+TGG | - | chr4.2:42662287-42662306 | MS.gene004125:intron | 45.0% |
| !! | TAATGGAGTAATGGACACCC+TGG | - | chr4.2:42659669-42659688 | MS.gene004125:intron | 45.0% |
| !! | TAAATAAAAAAAATTATATG+TGG | - | chr4.2:42660526-42660545 | MS.gene004125:intron | 5.0% |
| !! | TTATTCATATTTATTTAAAT+AGG | + | chr4.2:42657934-42657953 | None:intergenic | 5.0% |
| !!! | ATATTATTTATATGATTTTT+GGG | + | chr4.2:42659834-42659853 | None:intergenic | 5.0% |
| AGGTCTTGCAAAGCCTAGCT+CGG | - | chr4.2:42658702-42658721 | MS.gene004125:intron | 50.0% | |
| ATCTGAGGAGTCCAAACCCT+TGG | + | chr4.2:42658752-42658771 | None:intergenic | 50.0% | |
| CAAACCCTTGGATTTAGGGG+TGG | + | chr4.2:42658740-42658759 | None:intergenic | 50.0% | |
| CACCCCTAAATCCAAGGGTT+TGG | - | chr4.2:42658738-42658757 | MS.gene004125:intron | 50.0% | |
| CCACCTTGGTGAATACGAGT+CGG | - | chr4.2:42657310-42657329 | MS.gene004125:CDS | 50.0% | |
| CCATAACTTAGAGGTCTCGC+CGG | + | chr4.2:42661041-42661060 | None:intergenic | 50.0% | |
| CGGATGCTTGTGCATGAAAG+GGG | - | chr4.2:42660138-42660157 | MS.gene004125:intron | 50.0% | |
| CGGATGTCTAGCTGATGAGA+TGG | + | chr4.2:42657634-42657653 | None:intergenic | 50.0% | |
| GAAGGAAGGAAGGACTTTGG+GGG | - | chr4.2:42661355-42661374 | MS.gene004125:intron | 50.0% | |
| GACAGTAGGCCACGTATTAG+AGG | - | chr4.2:42663154-42663173 | MS.gene004125:CDS | 50.0% | |
| GCGGATGCTTGTGCATGAAA+GGG | - | chr4.2:42660137-42660156 | MS.gene004125:intron | 50.0% | |
| GGAAGACATTGGCAGACAGT+AGG | - | chr4.2:42663140-42663159 | MS.gene004125:CDS | 50.0% | |
| GGAAGGAAGGAAGGACTTTG+GGG | - | chr4.2:42661354-42661373 | MS.gene004125:intron | 50.0% | |
| GGCCACGCGTTTATAGAGTT+TGG | + | chr4.2:42661934-42661953 | None:intergenic | 50.0% | |
| GGGATGAACAGAGAAGACAG+AGG | + | chr4.2:42661597-42661616 | None:intergenic | 50.0% | |
| GTGCATGAAAGGGGTAGCTA+TGG | - | chr4.2:42660147-42660166 | MS.gene004125:intron | 50.0% | |
| TGAACAGAGAAGACAGAGGG+AGG | + | chr4.2:42661593-42661612 | None:intergenic | 50.0% | |
| TTTAGGGGTGGGAATAGGCT+AGG | + | chr4.2:42658728-42658747 | None:intergenic | 50.0% | |
| TTTGCGAGTTTGGAGGGGAA+AGG | - | chr4.2:42661333-42661352 | MS.gene004125:intron | 50.0% | |
| TTTGGAGGGGAAAGGAAGGA+AGG | - | chr4.2:42661341-42661360 | MS.gene004125:intron | 50.0% | |
| ! | ATGGGTTAAATGGAGGGGTG+TGG | + | chr4.2:42661662-42661681 | None:intergenic | 50.0% |
| ! | CACCTCACAAGCCAGTTTTG+TGG | + | chr4.2:42659564-42659583 | None:intergenic | 50.0% |
| ! | CACTTTGAGAGGAGTATGGG+TGG | + | chr4.2:42661425-42661444 | None:intergenic | 50.0% |
| ! | GGCCTTCTGAAAGCCTGATA+CGG | + | chr4.2:42658603-42658622 | None:intergenic | 50.0% |
| ! | TAGAGGCGTAGATTCGAACC+CGG | - | chr4.2:42657658-42657677 | MS.gene004125:intron | 50.0% |
| ! | TGGGTTAAATGGAGGGGTGT+GGG | + | chr4.2:42661661-42661680 | None:intergenic | 50.0% |
| ! | TGGTTGTGCTGCTGCATATC+AGG | + | chr4.2:42657293-42657312 | None:intergenic | 50.0% |
| !! | CAAAACTGGCTTGTGAGGTG+AGG | - | chr4.2:42659564-42659583 | MS.gene004125:intron | 50.0% |
| !! | CCTCACAAGCCAGTTTTGTG+GGG | + | chr4.2:42659562-42659581 | None:intergenic | 50.0% |
| ACAGGTTAGCAGGCCGTATC+AGG | - | chr4.2:42658587-42658606 | MS.gene004125:intron | 55.0% | |
| AGCGGGTGCACTAGCTACTT+GGG | - | chr4.2:42657383-42657402 | MS.gene004125:CDS | 55.0% | |
| AGTAGGGATGGGAATAGGCC+AGG | - | chr4.2:42657761-42657780 | MS.gene004125:intron | 55.0% | |
| ATGCAGCAGCACAACCACCT+TGG | - | chr4.2:42657296-42657315 | MS.gene004125:CDS | 55.0% | |
| CAAATTGGCAGGCCAGACTC+AGG | - | chr4.2:42658682-42658701 | MS.gene004125:intron | 55.0% | |
| CACCACCAGAGTTGAGCTGT+GGG | + | chr4.2:42657337-42657356 | None:intergenic | 55.0% | |
| CCGGCGAGACCTCTAAGTTA+TGG | - | chr4.2:42661038-42661057 | MS.gene004125:intron | 55.0% | |
| CGAGTTTGGAGGGGAAAGGA+AGG | - | chr4.2:42661337-42661356 | MS.gene004125:intron | 55.0% | |
| CTCCTCTGCATCAATCGGTC+CGG | + | chr4.2:42657413-42657432 | None:intergenic | 55.0% | |
| CTTATGAAAAGCCGCACGCC+AGG | - | chr4.2:42658645-42658664 | MS.gene004125:intron | 55.0% | |
| GAGGGGAAAGGAAGGAAGGA+AGG | - | chr4.2:42661345-42661364 | MS.gene004125:intron | 55.0% | |
| GAGTGTGGACATCCGTCTCA+AGG | - | chr4.2:42659787-42659806 | MS.gene004125:CDS | 55.0% | |
| GCCCAGAGGAAAAGAAGGTG+AGG | - | chr4.2:42660816-42660835 | MS.gene004125:intron | 55.0% | |
| GCTAGGCCATAGGCAACTGT+AGG | + | chr4.2:42657791-42657810 | None:intergenic | 55.0% | |
| GGCCGTATCAGGCTTTCAGA+AGG | - | chr4.2:42658598-42658617 | MS.gene004125:intron | 55.0% | |
| GGCGGATGCTTGTGCATGAA+AGG | - | chr4.2:42660136-42660155 | MS.gene004125:intron | 55.0% | |
| GGCTTTGCAAGACCTGAGTC+TGG | + | chr4.2:42658697-42658716 | None:intergenic | 55.0% | |
| GTAGAAAAAGGGCGGTGGTG+TGG | + | chr4.2:42657470-42657489 | None:intergenic | 55.0% | |
| GTGCGGCGAGTTTACAGTAC+TGG | - | chr4.2:42657527-42657546 | MS.gene004125:intron | 55.0% | |
| TTCCTCTGGGCTGTAAGGAC+TGG | + | chr4.2:42660807-42660826 | None:intergenic | 55.0% | |
| ! | AGAGGCGTAGATTCGAACCC+GGG | - | chr4.2:42657659-42657678 | MS.gene004125:intron | 55.0% |
| ! | CCGACTCGTATTCACCAAGG+TGG | + | chr4.2:42657313-42657332 | None:intergenic | 55.0% |
| ! | GTTAAATGGAGGGGTGTGGG+TGG | + | chr4.2:42661658-42661677 | None:intergenic | 55.0% |
| !! | CCCCACAAAACTGGCTTGTG+AGG | - | chr4.2:42659559-42659578 | MS.gene004125:intron | 55.0% |
| !! | GGACCGACTCGTATTCACCA+AGG | + | chr4.2:42657316-42657335 | None:intergenic | 55.0% |
| AAAAGCCGCACGCCAGGCTT+AGG | - | chr4.2:42658651-42658670 | MS.gene004125:intron | 60.0% | |
| AGCCAGTCCTTACAGCCCAG+AGG | - | chr4.2:42660802-42660821 | MS.gene004125:intron | 60.0% | |
| CACTAGCTACTTGGGGTCGC+CGG | - | chr4.2:42657391-42657410 | MS.gene004125:CDS | 60.0% | |
| CAGCGGGTGCACTAGCTACT+TGG | - | chr4.2:42657382-42657401 | MS.gene004125:CDS | 60.0% | |
| CCACAGCTCAACTCTGGTGG+TGG | - | chr4.2:42657335-42657354 | MS.gene004125:CDS | 60.0% | |
| CCACCACCAGAGTTGAGCTG+TGG | + | chr4.2:42657338-42657357 | None:intergenic | 60.0% | |
| CCTATGGCCTAGCGTACGAC+AGG | - | chr4.2:42657798-42657817 | MS.gene004125:intron | 60.0% | |
| CCTGTCGTACGCTAGGCCAT+AGG | + | chr4.2:42657801-42657820 | None:intergenic | 60.0% | |
| CTGCTGCATATCAGGCGTGG+TGG | + | chr4.2:42657285-42657304 | None:intergenic | 60.0% | |
| GCGGGTGCACTAGCTACTTG+GGG | - | chr4.2:42657384-42657403 | MS.gene004125:CDS | 60.0% | |
| GGAATAGGCTAGGCCGAGCT+AGG | + | chr4.2:42658718-42658737 | None:intergenic | 60.0% | |
| GGCCATAGGCAACTGTAGGC+CGG | + | chr4.2:42657787-42657806 | None:intergenic | 60.0% | |
| GTCCCACAGCTCAACTCTGG+TGG | - | chr4.2:42657332-42657351 | MS.gene004125:CDS | 60.0% | |
| TCGGTCCCACAGCTCAACTC+TGG | - | chr4.2:42657329-42657348 | MS.gene004125:CDS | 60.0% | |
| ! | GTGCTGCTGCATATCAGGCG+TGG | + | chr4.2:42657288-42657307 | None:intergenic | 60.0% |
| !! | CAGCTCAACTCTGGTGGTGG+TGG | - | chr4.2:42657338-42657357 | MS.gene004125:CDS | 60.0% |
| !! | CTCAACTCTGGTGGTGGTGG+TGG | - | chr4.2:42657341-42657360 | MS.gene004125:CDS | 60.0% |
| CATGCACAAGCATCCGCCCC+TGG | + | chr4.2:42660134-42660153 | None:intergenic | 65.0% | |
| CGCCGGACCGATTGATGCAG+AGG | - | chr4.2:42657408-42657427 | MS.gene004125:CDS | 65.0% | |
| GAAGGCCTAAGCCTGGCGTG+CGG | + | chr4.2:42658659-42658678 | None:intergenic | 65.0% | |
| GGCCGGCCTACAGTTGCCTA+TGG | - | chr4.2:42657782-42657801 | MS.gene004125:intron | 65.0% | |
| GGGATGGGAATAGGCCAGGC+CGG | - | chr4.2:42657765-42657784 | MS.gene004125:intron | 65.0% | |
| TAGGCAACTGTAGGCCGGCC+TGG | + | chr4.2:42657782-42657801 | None:intergenic | 65.0% | |
| GGCCTAGCGTACGACAGGCC+AGG | - | chr4.2:42657803-42657822 | MS.gene004125:intron | 70.0% | |
| GGCCTGGCCTGTCGTACGCT+AGG | + | chr4.2:42657808-42657827 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 42657254 | 42663366 | 42657254 | ID=MS.gene004125 |
| chr4.2 | mRNA | 42657254 | 42663366 | 42657254 | ID=MS.gene004125.t1;Parent=MS.gene004125 |
| chr4.2 | exon | 42663058 | 42663366 | 42663058 | ID=MS.gene004125.t1.exon1;Parent=MS.gene004125.t1 |
| chr4.2 | CDS | 42663058 | 42663366 | 42663058 | ID=cds.MS.gene004125.t1;Parent=MS.gene004125.t1 |
| chr4.2 | exon | 42659728 | 42659907 | 42659728 | ID=MS.gene004125.t1.exon2;Parent=MS.gene004125.t1 |
| chr4.2 | CDS | 42659728 | 42659907 | 42659728 | ID=cds.MS.gene004125.t1;Parent=MS.gene004125.t1 |
| chr4.2 | exon | 42657254 | 42657490 | 42657254 | ID=MS.gene004125.t1.exon3;Parent=MS.gene004125.t1 |
| chr4.2 | CDS | 42657254 | 42657490 | 42657254 | ID=cds.MS.gene004125.t1;Parent=MS.gene004125.t1 |
| Gene Sequence |
| Protein sequence |
