AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene004165

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004165.t1 MTR_5g096790 32.188 320 162 7 2 269 5 321 3.90e-43 149
MS.gene004165.t1 MTR_5g096700 29.560 318 168 9 2 266 7 321 1.53e-30 117
MS.gene004165.t1 MTR_3g061090 34.555 191 121 1 82 268 60 250 2.96e-30 114
MS.gene004165.t1 MTR_3g061090 27.187 320 176 6 3 268 6 322 7.30e-30 115
MS.gene004165.t1 MTR_5g096700 32.922 243 135 7 48 266 24 262 1.70e-28 110
MS.gene004165.t1 MTR_1g029850 35.099 151 94 1 125 271 175 325 1.68e-21 92.4
MS.gene004165.t1 MTR_3g088560 30.366 191 127 3 81 266 6 195 1.24e-19 84.7
MS.gene004165.t1 MTR_3g088560 30.366 191 127 3 81 266 58 247 3.63e-19 84.7
MS.gene004165.t1 MTR_3g088560 30.366 191 127 3 81 266 73 262 4.88e-19 84.7
MS.gene004165.t1 MTR_3g088560 25.234 321 181 9 1 266 1 317 7.92e-19 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004165.t1 AT1G55760 29.154 319 168 10 2 266 5 319 7.75e-30 115
MS.gene004165.t1 AT1G21780 35.256 156 97 1 115 266 161 316 1.35e-23 98.2
MS.gene004165.t1 AT1G21780 35.256 156 97 1 115 266 161 316 1.35e-23 98.2

Find 43 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAACCAAGAGCAAACTTA+TGG 0.314969 4.2:-43353215 None:intergenic
TGCATCTAAACAAACTATTA+TGG 0.321751 4.2:+43353191 MS.gene004165:CDS
GGAGAATCTTTCCGAGCTAA+TGG 0.351527 4.2:+43353096 MS.gene004165:CDS
CAGTGGGTTACCTTGCTCAT+TGG 0.357342 4.2:+43351932 MS.gene004165:CDS
CGGAAAACAAAGTCAAATTC+TGG 0.362138 4.2:+43352242 MS.gene004165:CDS
TGATGTAATTGATCTGATAA+AGG 0.372083 4.2:+43353407 MS.gene004165:CDS
TTTCCGTAGAACTCTTGATA+TGG 0.407271 4.2:+43353587 MS.gene004165:CDS
TGAACCAAGAGCAAACTTAT+GGG 0.415322 4.2:-43353214 None:intergenic
ATGGCCCATAAGTTTGCTCT+TGG 0.423668 4.2:+43353210 MS.gene004165:CDS
TCTATGACTTGAAGACTTTG+AGG 0.462188 4.2:+43353499 MS.gene004165:CDS
TCTTTGTCTCCTCGAATCAA+TGG 0.480595 4.2:-43353150 None:intergenic
AGTCAAATTCTGGCCATGTC+AGG 0.484616 4.2:+43352252 MS.gene004165:CDS
CTATGACTTGAAGACTTTGA+GGG 0.500931 4.2:+43353500 MS.gene004165:CDS
ACCTCAATGTAGTATGCCTC+AGG 0.505531 4.2:-43353001 None:intergenic
TCTACGATATCGTGAGAGAC+GGG 0.513513 4.2:+43353337 MS.gene004165:CDS
GAAAGTGGATGTCAACTACT+TGG 0.515256 4.2:+43351954 MS.gene004165:CDS
ATCGCTTAAATCCATTAGCT+CGG 0.517959 4.2:-43353107 None:intergenic
TCTGATGATCCATTGATTCG+AGG 0.522998 4.2:+43353141 MS.gene004165:CDS
TCAATGTGCTCGTTTACTTG+TGG 0.534848 4.2:+43353524 MS.gene004165:CDS
GCCTATCTTGTCAAATCAGT+GGG 0.535790 4.2:+43351916 MS.gene004165:CDS
ATGTAGAAGAAGTTAGAGAC+TGG 0.556201 4.2:+43352921 MS.gene004165:intron
TATAGTTGTCATATCTGAGA+TGG 0.556735 4.2:-43353289 None:intergenic
TATCCATATCAAGAGTTCTA+CGG 0.557020 4.2:-43353590 None:intergenic
ACCCACTGATTTGACAAGAT+AGG 0.557206 4.2:-43351917 None:intergenic
TCAAAATTGATATGTGGCAG+TGG 0.558226 4.2:+43352010 MS.gene004165:CDS
TGAGATGGAAATGCTATCAA+CGG 0.566339 4.2:-43353274 None:intergenic
TCAAAGTCTTCAAGTCATAG+AGG 0.581895 4.2:-43353497 None:intergenic
ATACATTCAAAATTGATATG+TGG 0.583691 4.2:+43352004 MS.gene004165:CDS
TTAAAATCACTCGGTAGCAA+AGG 0.583693 4.2:-43353643 None:intergenic
TTACCTTGCTCATTGGAAAG+TGG 0.591036 4.2:+43351939 MS.gene004165:CDS
GGCCTATCTTGTCAAATCAG+TGG 0.591536 4.2:+43351915 MS.gene004165:CDS
TGATAAAGGATATTGAGATA+AGG 0.600618 4.2:+43353421 MS.gene004165:CDS
CATCCACTTTCCAATGAGCA+AGG 0.612077 4.2:-43351942 None:intergenic
TATAATTAAATCACCTGACA+TGG 0.614099 4.2:-43352265 None:intergenic
CTACACAGAATGTAATTGAG+AGG 0.614219 4.2:+43353460 MS.gene004165:CDS
TTCTACGATATCGTGAGAGA+CGG 0.622856 4.2:+43353336 MS.gene004165:CDS
AGCACGAATTTCTGTCCGAA+CGG 0.623731 4.2:-43353565 None:intergenic
CTACGATATCGTGAGAGACG+GGG 0.633807 4.2:+43353338 MS.gene004165:CDS
TAATCTATAAATATTTGACA+TGG 0.652304 4.2:-43353312 None:intergenic
GCCTGAGGCATACTACATTG+AGG 0.668232 4.2:+43353000 MS.gene004165:CDS
GGATCTTCTGAATTATAGTG+AGG 0.671599 4.2:+43353359 MS.gene004165:CDS
GTGTGATATTGAGCTGCCTG+AGG 0.690565 4.2:+43352985 MS.gene004165:CDS
TTCAACTTAAGCTTAGAACG+AGG 0.728389 4.2:+43352947 MS.gene004165:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTATATTAGTATATATTA+TGG - chr4.2:43352883-43352902 None:intergenic 10.0%
!! AACAAAAATAGTAAATAACT+CGG - chr4.2:43353055-43353074 None:intergenic 15.0%
!! TAATCTATAAATATTTGACA+TGG - chr4.2:43353315-43353334 None:intergenic 15.0%
!!! TTAAAATTTTGAATGAAGAA+CGG + chr4.2:43353075-43353094 MS.gene004165:intron 15.0%
!! AAATATGATTTCGATATATG+CGG + chr4.2:43352671-43352690 MS.gene004165:intron 20.0%
!! ATACATTCAAAATTGATATG+TGG + chr4.2:43352004-43352023 MS.gene004165:CDS 20.0%
!! TATCCCAATTATAAAATTGT+GGG + chr4.2:43352168-43352187 MS.gene004165:intron 20.0%
!!! ATTTTTTTAGAGATACCAAT+TGG + chr4.2:43352344-43352363 MS.gene004165:intron 20.0%
!!! TTTTATCTCCATTGAAAATT+AGG - chr4.2:43352430-43352449 None:intergenic 20.0%
!!! TTTTTTTAGAGATACCAATT+GGG + chr4.2:43352345-43352364 MS.gene004165:intron 20.0%
! AAATACTAGACAAAAAACAC+AGG - chr4.2:43352838-43352857 None:intergenic 25.0%
! AATATGATTTCGATATATGC+GGG + chr4.2:43352672-43352691 MS.gene004165:intron 25.0%
! CTAATTTGAAAAGATGCAAT+GGG - chr4.2:43352207-43352226 None:intergenic 25.0%
! CTGGAGGAATAAAAAAAAAT+TGG - chr4.2:43352102-43352121 None:intergenic 25.0%
! GTATCCCAATTATAAAATTG+TGG + chr4.2:43352167-43352186 MS.gene004165:intron 25.0%
! TAATTTGAAAAGATGCAATG+GGG - chr4.2:43352206-43352225 None:intergenic 25.0%
! TATAATTAAATCACCTGACA+TGG - chr4.2:43352268-43352287 None:intergenic 25.0%
! TGATAAAGGATATTGAGATA+AGG + chr4.2:43353421-43353440 MS.gene004165:CDS 25.0%
! TGATGTAATTGATCTGATAA+AGG + chr4.2:43353407-43353426 MS.gene004165:CDS 25.0%
! TGCATCTAAACAAACTATTA+TGG + chr4.2:43353191-43353210 MS.gene004165:CDS 25.0%
!! ATCTTTTCAAATTAGGGTTT+TGG + chr4.2:43352212-43352231 MS.gene004165:intron 25.0%
!! CATTGCATCTTTTCAAATTA+GGG + chr4.2:43352206-43352225 MS.gene004165:intron 25.0%
!! TTTTCCCTAATTTCAAAAGA+CGG - chr4.2:43352742-43352761 None:intergenic 25.0%
!!! CAATTTTTTTTTATTCCTCC+AGG + chr4.2:43352100-43352119 MS.gene004165:intron 25.0%
AAAAACATAGAGAGAAAGAG+AGG - chr4.2:43352053-43352072 None:intergenic 30.0%
AAAACATAGAGAGAAAGAGA+GGG - chr4.2:43352052-43352071 None:intergenic 30.0%
AATTTGAAAAGATGCAATGG+GGG - chr4.2:43352205-43352224 None:intergenic 30.0%
ATATGATTTCGATATATGCG+GGG + chr4.2:43352673-43352692 MS.gene004165:intron 30.0%
ATTGAAAATTAGGAGAGGTT+TGG - chr4.2:43352420-43352439 None:intergenic 30.0%
CCTAATTTGAAAAGATGCAA+TGG - chr4.2:43352208-43352227 None:intergenic 30.0%
TATAGTTGTCATATCTGAGA+TGG - chr4.2:43353292-43353311 None:intergenic 30.0%
TATCCATATCAAGAGTTCTA+CGG - chr4.2:43353593-43353612 None:intergenic 30.0%
TTGAAAATTAGGAGAGGTTT+GGG - chr4.2:43352419-43352438 None:intergenic 30.0%
TTTCCCTAATTTCAAAAGAC+GGG - chr4.2:43352741-43352760 None:intergenic 30.0%
! AAACCTCTCCTAATTTTCAA+TGG + chr4.2:43352419-43352438 MS.gene004165:intron 30.0%
! ACCACCCACAATTTTATAAT+TGG - chr4.2:43352175-43352194 None:intergenic 30.0%
! CCACCCACAATTTTATAATT+GGG - chr4.2:43352174-43352193 None:intergenic 30.0%
! CCATTGCATCTTTTCAAATT+AGG + chr4.2:43352205-43352224 MS.gene004165:intron 30.0%
!! TGTTTTTAAGCAAATGTTCG+AGG + chr4.2:43353245-43353264 MS.gene004165:CDS 30.0%
!!! AATTTGACTTTGTTTTCCGA+TGG - chr4.2:43352241-43352260 None:intergenic 30.0%
AATAATGATATCTCGCTCGT+GGG + chr4.2:43352125-43352144 MS.gene004165:intron 35.0%
AGATATCATTATTCTCCTGG+AGG - chr4.2:43352118-43352137 None:intergenic 35.0%
ATCGCTTAAATCCATTAGCT+CGG - chr4.2:43353110-43353129 None:intergenic 35.0%
ATGTAGAAGAAGTTAGAGAC+TGG + chr4.2:43352921-43352940 MS.gene004165:intron 35.0%
ATTTGAAAAGATGCAATGGG+GGG - chr4.2:43352204-43352223 None:intergenic 35.0%
CCCAATTATAAAATTGTGGG+TGG + chr4.2:43352171-43352190 MS.gene004165:intron 35.0%
CGGAAAACAAAGTCAAATTC+TGG + chr4.2:43352242-43352261 MS.gene004165:CDS 35.0%
CTACACAGAATGTAATTGAG+AGG + chr4.2:43353460-43353479 MS.gene004165:CDS 35.0%
CTAGACAAAAAACACAGGAT+AGG - chr4.2:43352833-43352852 None:intergenic 35.0%
CTATGACTTGAAGACTTTGA+GGG + chr4.2:43353500-43353519 MS.gene004165:CDS 35.0%
GGATCTTCTGAATTATAGTG+AGG + chr4.2:43353359-43353378 MS.gene004165:CDS 35.0%
TAATACAACTCAAGTTCACG+TGG - chr4.2:43352509-43352528 None:intergenic 35.0%
TCAAAAAATTGCACACCGTT+CGG + chr4.2:43353550-43353569 MS.gene004165:CDS 35.0%
TCAAAATTGATATGTGGCAG+TGG + chr4.2:43352010-43352029 MS.gene004165:CDS 35.0%
TCAAAGTCTTCAAGTCATAG+AGG - chr4.2:43353500-43353519 None:intergenic 35.0%
TCTATGACTTGAAGACTTTG+AGG + chr4.2:43353499-43353518 MS.gene004165:CDS 35.0%
TCTCCATTGAAAATTAGGAG+AGG - chr4.2:43352425-43352444 None:intergenic 35.0%
TGAACCAAGAGCAAACTTAT+GGG - chr4.2:43353217-43353236 None:intergenic 35.0%
TGAGATGGAAATGCTATCAA+CGG - chr4.2:43353277-43353296 None:intergenic 35.0%
TTCAACTTAAGCTTAGAACG+AGG + chr4.2:43352947-43352966 MS.gene004165:CDS 35.0%
TTCCCTAATTTCAAAAGACG+GGG - chr4.2:43352740-43352759 None:intergenic 35.0%
TTGAACCAAGAGCAAACTTA+TGG - chr4.2:43353218-43353237 None:intergenic 35.0%
TTTCCGTAGAACTCTTGATA+TGG + chr4.2:43353587-43353606 MS.gene004165:CDS 35.0%
! ATACCCGAATTTTATGGGTT+TGG - chr4.2:43352396-43352415 None:intergenic 35.0%
! CGTGAACTTGAGTTGTATTA+TGG + chr4.2:43352509-43352528 MS.gene004165:intron 35.0%
! TACCCGAATTTTATGGGTTT+GGG - chr4.2:43352395-43352414 None:intergenic 35.0%
! TTGGGATACCCGAATTTTAT+GGG - chr4.2:43352401-43352420 None:intergenic 35.0%
! TTTTAAGCAAATGTTCGAGG+AGG + chr4.2:43353248-43353267 MS.gene004165:CDS 35.0%
!! TTTGGGATACCCGAATTTTA+TGG - chr4.2:43352402-43352421 None:intergenic 35.0%
AAATCCAGACCCAATCAACT+TGG + chr4.2:43352759-43352778 MS.gene004165:intron 40.0%
AATCCAGACCCAATCAACTT+GGG + chr4.2:43352760-43352779 MS.gene004165:intron 40.0%
AATTTCAAAAGACGGGGGTT+GGG - chr4.2:43352734-43352753 None:intergenic 40.0%
ATAATGATATCTCGCTCGTG+GGG + chr4.2:43352126-43352145 MS.gene004165:intron 40.0%
CTCCCCAAACCCATAAAATT+CGG + chr4.2:43352389-43352408 MS.gene004165:intron 40.0%
GAAAGTGGATGTCAACTACT+TGG + chr4.2:43351954-43351973 MS.gene004165:CDS 40.0%
GAATAATGATATCTCGCTCG+TGG + chr4.2:43352124-43352143 MS.gene004165:intron 40.0%
GCCTATCTTGTCAAATCAGT+GGG + chr4.2:43351916-43351935 MS.gene004165:CDS 40.0%
GCGAGATATCATTATTCTCC+TGG - chr4.2:43352121-43352140 None:intergenic 40.0%
TAATTTCAAAAGACGGGGGT+TGG - chr4.2:43352735-43352754 None:intergenic 40.0%
TCAATGTGCTCGTTTACTTG+TGG + chr4.2:43353524-43353543 MS.gene004165:CDS 40.0%
TCCCCAAACCCATAAAATTC+GGG + chr4.2:43352390-43352409 MS.gene004165:intron 40.0%
TCCCTAATTTCAAAAGACGG+GGG - chr4.2:43352739-43352758 None:intergenic 40.0%
TCTTTGTCTCCTCGAATCAA+TGG - chr4.2:43353153-43353172 None:intergenic 40.0%
TTACCTTGCTCATTGGAAAG+TGG + chr4.2:43351939-43351958 MS.gene004165:CDS 40.0%
TTCTACGATATCGTGAGAGA+CGG + chr4.2:43353336-43353355 MS.gene004165:CDS 40.0%
TTTGAAAAGATGCAATGGGG+GGG - chr4.2:43352203-43352222 None:intergenic 40.0%
! ACCCGAATTTTATGGGTTTG+GGG - chr4.2:43352394-43352413 None:intergenic 40.0%
! GAATTTTATGGGTTTGGGGA+GGG - chr4.2:43352390-43352409 None:intergenic 40.0%
! TGGGTTTTCTCCGTCAAATT+GGG + chr4.2:43352779-43352798 MS.gene004165:intron 40.0%
! TTGGGTTTTCTCCGTCAAAT+TGG + chr4.2:43352778-43352797 MS.gene004165:intron 40.0%
!! ACCCACTGATTTGACAAGAT+AGG - chr4.2:43351920-43351939 None:intergenic 40.0%
!! GGAGAAAACCCAAGTTGATT+GGG - chr4.2:43352771-43352790 None:intergenic 40.0%
!! TAGAACGAGGCACTTTTACT+TGG + chr4.2:43352960-43352979 MS.gene004165:CDS 40.0%
!! TCTGATGATCCATTGATTCG+AGG + chr4.2:43353141-43353160 MS.gene004165:CDS 40.0%
!!! AACCCCCGTCTTTTGAAATT+AGG + chr4.2:43352734-43352753 MS.gene004165:intron 40.0%
!!! ACCCCCGTCTTTTGAAATTA+GGG + chr4.2:43352735-43352754 MS.gene004165:intron 40.0%
!!! ATTAGGGTTTTGGACACCAT+CGG + chr4.2:43352222-43352241 MS.gene004165:intron 40.0%
AACACAGGATAGGACAACTG+CGG - chr4.2:43352823-43352842 None:intergenic 45.0%
ACCTCAATGTAGTATGCCTC+AGG - chr4.2:43353004-43353023 None:intergenic 45.0%
AGATACCAATTGGGTAGACC+GGG + chr4.2:43352354-43352373 MS.gene004165:intron 45.0%
AGCACGAATTTCTGTCCGAA+CGG - chr4.2:43353568-43353587 None:intergenic 45.0%
AGTCAAATTCTGGCCATGTC+AGG + chr4.2:43352252-43352271 MS.gene004165:CDS 45.0%
CATCCACTTTCCAATGAGCA+AGG - chr4.2:43351945-43351964 None:intergenic 45.0%
GAGATACCAATTGGGTAGAC+CGG + chr4.2:43352353-43352372 MS.gene004165:intron 45.0%
GGAGAATCTTTCCGAGCTAA+TGG + chr4.2:43353096-43353115 MS.gene004165:CDS 45.0%
GGCCTATCTTGTCAAATCAG+TGG + chr4.2:43351915-43351934 MS.gene004165:CDS 45.0%
TCTACGATATCGTGAGAGAC+GGG + chr4.2:43353337-43353356 MS.gene004165:CDS 45.0%
TGATTTCGATATATGCGGGG+CGG + chr4.2:43352676-43352695 MS.gene004165:intron 45.0%
! ATGGCCCATAAGTTTGCTCT+TGG + chr4.2:43353210-43353229 MS.gene004165:CDS 45.0%
! CGAATTTTATGGGTTTGGGG+AGG - chr4.2:43352391-43352410 None:intergenic 45.0%
! GGGTTTTCTCCGTCAAATTG+GGG + chr4.2:43352780-43352799 MS.gene004165:intron 45.0%
! TTTTCTCCGTCAAATTGGGG+CGG + chr4.2:43352783-43352802 MS.gene004165:intron 45.0%
!! AAACCCAAGTTGATTGGGTC+TGG - chr4.2:43352766-43352785 None:intergenic 45.0%
!! CGGAGAAAACCCAAGTTGAT+TGG - chr4.2:43352772-43352791 None:intergenic 45.0%
ACACAGGATAGGACAACTGC+GGG - chr4.2:43352822-43352841 None:intergenic 50.0%
CAACTCAAGTTCACGTGGAG+TGG - chr4.2:43352504-43352523 None:intergenic 50.0%
CTACGATATCGTGAGAGACG+GGG + chr4.2:43353338-43353357 MS.gene004165:CDS 50.0%
GATTTCGATATATGCGGGGC+GGG + chr4.2:43352677-43352696 MS.gene004165:intron 50.0%
GCCTGAGGCATACTACATTG+AGG + chr4.2:43353000-43353019 MS.gene004165:CDS 50.0%
GCGGTTAATGGGGATATTGG+TGG - chr4.2:43352712-43352731 None:intergenic 50.0%
GTGTGATATTGAGCTGCCTG+AGG + chr4.2:43352985-43353004 MS.gene004165:CDS 50.0%
TCACGTGGAGTGGAGAGAAA+CGG - chr4.2:43352494-43352513 None:intergenic 50.0%
TGGGCGGTTAATGGGGATAT+TGG - chr4.2:43352715-43352734 None:intergenic 50.0%
TTTCTCCGTCAAATTGGGGC+GGG + chr4.2:43352784-43352803 MS.gene004165:intron 50.0%
! AAATTGGGGCGGGTTCGAAT+GGG + chr4.2:43352794-43352813 MS.gene004165:intron 50.0%
!! CAGTGGGTTACCTTGCTCAT+TGG + chr4.2:43351932-43351951 MS.gene004165:CDS 50.0%
AACCCATACCCGACAGGGTT+TGG + chr4.2:43352462-43352481 MS.gene004165:intron 55.0%
AACCCTGTCGGGTATGGGTT+TGG - chr4.2:43352462-43352481 None:intergenic 55.0%
ACCCAAACCCTGTCGGGTAT+GGG - chr4.2:43352467-43352486 None:intergenic 55.0%
ACCCATACCCGACAGGGTTT+GGG + chr4.2:43352463-43352482 MS.gene004165:intron 55.0%
ACCCTGTCGGGTATGGGTTT+GGG - chr4.2:43352461-43352480 None:intergenic 55.0%
ACGTGGAGTGGAGAGAAACG+GGG - chr4.2:43352492-43352511 None:intergenic 55.0%
CACGTGGAGTGGAGAGAAAC+GGG - chr4.2:43352493-43352512 None:intergenic 55.0%
TACCCAAACCCTGTCGGGTA+TGG - chr4.2:43352468-43352487 None:intergenic 55.0%
TCGAACCCGCCCCAATTTGA+CGG - chr4.2:43352792-43352811 None:intergenic 55.0%
TTCAAAAGACGGGGGTTGGG+CGG - chr4.2:43352731-43352750 None:intergenic 55.0%
! CAAATTGGGGCGGGTTCGAA+TGG + chr4.2:43352793-43352812 MS.gene004165:intron 55.0%
ACCCCAAACCCATACCCGAC+AGG + chr4.2:43352456-43352475 MS.gene004165:intron 60.0%
ACGGGGGTTGGGCGGTTAAT+GGG - chr4.2:43352723-43352742 None:intergenic 60.0%
CCAATTGGGTAGACCGGGTC+CGG + chr4.2:43352359-43352378 MS.gene004165:intron 60.0%
CCCCAAACCCATACCCGACA+GGG + chr4.2:43352457-43352476 MS.gene004165:intron 60.0%
CCCTGTCGGGTATGGGTTTG+GGG - chr4.2:43352460-43352479 None:intergenic 60.0%
CGGGGATACCCAAACCCTGT+CGG - chr4.2:43352474-43352493 None:intergenic 60.0%
GGGGATACCCAAACCCTGTC+GGG - chr4.2:43352473-43352492 None:intergenic 60.0%
GGGTTTGGGGAGGGCAAAAC+CGG - chr4.2:43352381-43352400 None:intergenic 60.0%
! ATATGCGGGGCGGGTTTGGA+TGG + chr4.2:43352686-43352705 MS.gene004165:intron 60.0%
! CGATATATGCGGGGCGGGTT+TGG + chr4.2:43352682-43352701 MS.gene004165:intron 60.0%
CCGGACCCGGTCTACCCAAT+TGG - chr4.2:43352362-43352381 None:intergenic 65.0%
CGGGGGTTGGGCGGTTAATG+GGG - chr4.2:43352722-43352741 None:intergenic 65.0%
GACGGGGGTTGGGCGGTTAA+TGG - chr4.2:43352724-43352743 None:intergenic 65.0%
GGGGAGGGCAAAACCGGACC+CGG - chr4.2:43352375-43352394 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 43351913 43353659 43351913 ID=MS.gene004165
chr4.2 mRNA 43351913 43353659 43351913 ID=MS.gene004165.t1;Parent=MS.gene004165
chr4.2 exon 43351913 43352031 43351913 ID=MS.gene004165.t1.exon1;Parent=MS.gene004165.t1
chr4.2 CDS 43351913 43352031 43351913 ID=cds.MS.gene004165.t1;Parent=MS.gene004165.t1
chr4.2 exon 43352227 43352273 43352227 ID=MS.gene004165.t1.exon2;Parent=MS.gene004165.t1
chr4.2 CDS 43352227 43352273 43352227 ID=cds.MS.gene004165.t1;Parent=MS.gene004165.t1
chr4.2 exon 43352927 43353021 43352927 ID=MS.gene004165.t1.exon3;Parent=MS.gene004165.t1
chr4.2 CDS 43352927 43353021 43352927 ID=cds.MS.gene004165.t1;Parent=MS.gene004165.t1
chr4.2 exon 43353093 43353659 43353093 ID=MS.gene004165.t1.exon4;Parent=MS.gene004165.t1
chr4.2 CDS 43353093 43353659 43353093 ID=cds.MS.gene004165.t1;Parent=MS.gene004165.t1
Gene Sequence

>MS.gene004165

ATGGCCTATCTTGTCAAATCAGTGGGTTACCTTGCTCATTGGAAAGTGGATGTCAACTACTTGGATCAGAATGAACTCAAACACATATCTGATACATTCAAAATTGATATGTGGCAGTGGTATATATTTTCTCACTCCCTCTCTTTCTCTCTATGTTTTTTTATTTTGCATGCATCGATTAATCAGCCAATTTTTTTTTATTCCTCCAGGAGAATAATGATATCTCGCTCGTGGGGTGCTTCTAATATCTCATTGTATCCCAATTATAAAATTGTGGGTGGTTTAAACCCCCCCATTGCATCTTTTCAAATTAGGGTTTTGGACACCATCGGAAAACAAAGTCAAATTCTGGCCATGTCAGGTGATTTAATTATACTAGTATCTAAGCACTTATAGAATTTAAATGTAAATATTTTCTTGTTAATTTTGATATTTTTTTAGAGATACCAATTGGGTAGACCGGGTCCGGTTTTGCCCTCCCCAAACCCATAAAATTCGGGTATCCCAAACCTCTCCTAATTTTCAATGGAGATAAAATGTAGAACCCCAAACCCATACCCGACAGGGTTTGGGTATCCCCGTTTCTCTCCACTCCACGTGAACTTGAGTTGTATTATGGTATTTTTTATATTAAAAGTTAAAAATCTATACTATTTTTTTTTCAACAATATAATATTTGTAAACAAAGAAATGATAGAGCAAAACAACTTGTTTGTAATTTACGAGTTTGTTTAAAGATTTTAATTTTAAGAGATGTAAAATATGATTTCGATATATGCGGGGCGGGTTTGGATGGCCACCAATATCCCCATTAACCGCCCAACCCCCGTCTTTTGAAATTAGGGAAAATCCAGACCCAATCAACTTGGGTTTTCTCCGTCAAATTGGGGCGGGTTCGAATGGGTACCCGCAGTTGTCCTATCCTGTGTTTTTTGTCTAGTATTTATATTTTGCAGATCAAATAGATCCATAATATATACTAATATACTTTCTGTCTTTTCTATATTAATGTAGAAGAAGTTAGAGACTGGCAGTTCAACTTAAGCTTAGAACGAGGCACTTTTACTTGGATGTGTGATATTGAGCTGCCTGAGGCATACTACATTGAGGTAGAGTTCTCAAGATAACTTAGTTACATACCGAGTTATTTACTATTTTTGTTTTAAAATTTTGAATGAAGAACGGAGAATCTTTCCGAGCTAATGGATTTAAGCGATATAAATTATCATCTGATGATCCATTGATTCGAGGAGACAAAGACACAACAATCTATATCGATGCATCTAAACAAACTATTATGGCCCATAAGTTTGCTCTTGGTTCAAAGTCAAGTGTTTTTAAGCAAATGTTCGAGGAGGATTCCGTTGATAGCATTTCCATCTCAGATATGACAACTATACCATGTCAAATATTTATAGATTACTTCTACGATATCGTGAGAGACGGGGATCTTCTGAATTATAGTGAGGAGTTATTAGAAGCTGCAAAGAAATATGATGTAATTGATCTGATAAAGGATATTGAGATAAGGCTCATAAAAGATCTCACTACACAGAATGTAATTGAGAGGATGAAGATAGCATACCTCTATGACTTGAAGACTTTGAGGGATCAATGTGCTCGTTTACTTGTGGAGTTCAAAAAATTGCACACCGTTCGGACAGAAATTCGTGCTTTCCGTAGAACTCTTGATATGGATACAATTAGCAAAATGTTTTGTGATTTTTGTACCTTTGCTACCGAGTGA
Protein sequence

>MS.gene004165.t1

MAYLVKSVGYLAHWKVDVNYLDQNELKHISDTFKIDMWQWVLDTIGKQSQILAMSEEVRDWQFNLSLERGTFTWMCDIELPEAYYIENGESFRANGFKRYKLSSDDPLIRGDKDTTIYIDASKQTIMAHKFALGSKSSVFKQMFEEDSVDSISISDMTTIPCQIFIDYFYDIVRDGDLLNYSEELLEAAKKYDVIDLIKDIEIRLIKDLTTQNVIERMKIAYLYDLKTLRDQCARLLVEFKKLHTVRTEIRAFRRTLDMDTISKMFCDFCTFATE