AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene004249

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004249.t1 MTR_2g016140 94.624 186 10 0 1 186 1 186 1.78e-132 377
MS.gene004249.t1 MTR_2g016140 96.875 64 2 0 182 245 250 313 1.23e-35 129
MS.gene004249.t1 MTR_2g016140 94.624 186 10 0 1 186 1 186 1.83e-132 376
MS.gene004249.t1 MTR_2g016140 98.413 63 1 0 182 244 250 312 1.47e-35 129
MS.gene004249.t1 MTR_4g079960 50.171 293 87 7 11 249 19 306 7.66e-78 238
MS.gene004249.t1 MTR_4g079960 50.519 289 84 7 11 245 19 302 1.14e-77 237
MS.gene004249.t1 MTR_4g079960 50.699 286 82 7 19 250 27 307 1.86e-77 237
MS.gene004249.t1 MTR_8g022290 40.794 277 109 6 19 241 64 339 4.38e-49 166
MS.gene004249.t1 MTR_2g092960 44.776 134 70 3 11 144 34 163 8.98e-29 114
MS.gene004249.t1 MTR_6g486270 28.384 229 139 7 23 236 130 348 4.31e-26 104
MS.gene004249.t1 MTR_2g102227 31.799 239 140 7 14 237 263 493 1.48e-24 102
MS.gene004249.t1 MTR_1g061600 37.624 101 57 3 23 122 133 228 4.70e-17 80.5
MS.gene004249.t1 MTR_1g037650 36.735 98 55 2 18 115 33 123 2.83e-14 69.3
MS.gene004249.t1 MTR_3g014280 37.755 98 54 2 18 115 33 123 8.71e-14 70.1
MS.gene004249.t1 MTR_5g017500 23.529 221 134 8 23 232 22 218 3.17e-12 64.7
MS.gene004249.t1 MTR_4g117990 31.915 94 62 2 22 114 43 135 7.60e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004249.t1 AT3G58630 42.384 302 99 7 3 237 2 295 4.02e-63 200
MS.gene004249.t1 AT3G58630 42.333 300 102 6 3 237 2 295 6.85e-63 199
MS.gene004249.t1 AT5G05550 43.388 242 110 6 19 248 20 246 6.10e-50 164
MS.gene004249.t1 AT5G05550 44.635 233 102 6 19 239 20 237 8.27e-50 164
MS.gene004249.t1 AT5G05550 44.635 233 102 6 19 239 20 237 1.40e-49 163
MS.gene004249.t1 AT3G11100 41.880 234 112 5 19 239 18 240 5.86e-47 156
MS.gene004249.t1 AT3G14180 50.000 126 58 3 19 142 80 202 2.56e-35 130
MS.gene004249.t1 AT3G14180 46.970 66 33 1 184 247 356 421 2.36e-12 66.6
MS.gene004249.t1 AT3G24490 30.317 221 139 4 23 236 90 302 1.44e-27 108
MS.gene004249.t1 AT1G54060 51.020 98 44 2 19 116 90 183 1.18e-21 92.8
MS.gene004249.t1 AT3G10030 35.433 127 74 3 23 145 161 283 2.44e-20 90.1
MS.gene004249.t1 AT3G10030 35.433 127 74 3 23 145 161 283 2.51e-20 90.1
MS.gene004249.t1 AT3G54390 26.071 280 137 10 5 235 16 274 1.87e-19 85.9
MS.gene004249.t1 AT3G54390 26.786 280 135 11 5 235 32 290 1.95e-19 85.9
MS.gene004249.t1 AT2G44730 32.979 94 61 2 22 114 63 155 4.73e-11 62.4

Find 63 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGAGGATGCAGATGTTTA+TGG 0.218617 2.4:+68882215 MS.gene004249:CDS
CATCGGAAATTTGCTAATTC+TGG 0.236718 2.4:+68881787 MS.gene004249:CDS
ACTGAGGCAGATGGTGGATT+TGG 0.320650 2.4:+68882155 MS.gene004249:CDS
AACTTCTTAGCACTGAAATT+AGG 0.324747 2.4:-68881703 None:intergenic
TTCCACTCTCGTCGATGCAT+GGG 0.378747 2.4:+68881438 MS.gene004249:CDS
GACCAACAATCCTCGCGAAC+GGG 0.390355 2.4:-68881403 None:intergenic
CTTCCACTCTCGTCGATGCA+TGG 0.395037 2.4:+68881437 MS.gene004249:CDS
GTGGAATGTACCGCAATTGC+AGG 0.408758 2.4:-68881823 None:intergenic
GCGAAGGCGATAGAGAGTTT+TGG 0.411580 2.4:+68882102 MS.gene004249:intron
ATTAAGCGTGGAAAACCATC+TGG 0.413416 2.4:+68882261 MS.gene004249:CDS
ATCAATTTCTTCACCGGTGG+CGG 0.426236 2.4:+68881726 MS.gene004249:CDS
AAAGAATCGTGGTGAAAATC+CGG 0.442007 2.4:-68881358 None:intergenic
GGAAAACCATCTGGGTCTAA+TGG 0.443061 2.4:+68882270 MS.gene004249:CDS
GTAATCTTCGTCAGAAAGAT+TGG 0.446554 2.4:+68881488 MS.gene004249:CDS
TCCCCGTTCGCGAGGATTGT+TGG 0.451755 2.4:+68881401 MS.gene004249:CDS
GGCGGTGACACCGTCGCCTC+CGG 0.452209 2.4:+68881744 MS.gene004249:CDS
GAAGTTATCAATTTCTTCAC+CGG 0.471334 2.4:+68881720 MS.gene004249:CDS
GATGCTGTTAACGCTCTTCA+TGG 0.472381 2.4:+68881523 MS.gene004249:CDS
GCTAGGGTTACGGAATCTAA+TGG 0.474097 2.4:+68881628 MS.gene004249:CDS
TATGGATACTCAAGTTCAGC+TGG 0.498348 2.4:+68882233 MS.gene004249:CDS
CGGAAATTTGCTAATTCTGG+TGG 0.506455 2.4:+68881790 MS.gene004249:CDS
CTCTTCCGTTGATTCCTCAT+CGG 0.506683 2.4:+68881770 MS.gene004249:CDS
CGTGGCTGCGGCTACTGCTA+CGG 0.507470 2.4:+68881882 MS.gene004249:CDS
GGCGACGGTGTCACCGCCAC+CGG 0.524853 2.4:-68881739 None:intergenic
GAATTATTCTGCCGTGGCTG+CGG 0.538446 2.4:+68881870 MS.gene004249:CDS
TGGTGAAATGTATGAGAGAG+TGG 0.540008 2.4:+68882122 MS.gene004249:CDS
GGAAGAGCCACCGGAGGCGA+CGG 0.553904 2.4:-68881754 None:intergenic
ACAATCCTCGCGAACGGGGA+CGG 0.571999 2.4:-68881398 None:intergenic
TCGTCGATGCATGGGGTCGT+CGG 0.574131 2.4:+68881446 MS.gene004249:CDS
CGTAGCAGTAGCCGCAGCCA+CGG 0.576525 2.4:-68881881 None:intergenic
TGACCAACAATCCTCGCGAA+CGG 0.577799 2.4:-68881404 None:intergenic
CTAAAGATCTTGAAGTGCAG+AGG 0.579375 2.4:+68882199 MS.gene004249:CDS
GGAATCAACGGAAGAGCCAC+CGG 0.582868 2.4:-68881763 None:intergenic
ATCTCACCATTAGACCCAGA+TGG 0.584691 2.4:-68882276 None:intergenic
TTATTCATCACCTGCAATTG+CGG 0.591019 2.4:+68881813 MS.gene004249:CDS
CGAACGGGGACGGTGCGTGA+CGG 0.602447 2.4:-68881388 None:intergenic
GCAGAATAATTCCTCTTCTG+AGG 0.603793 2.4:-68881859 None:intergenic
TGGTGGATTTGGAGAAACAA+AGG 0.604782 2.4:+68882166 MS.gene004249:CDS
ACGGGGACGGTGCGTGACGG+TGG 0.605580 2.4:-68881385 None:intergenic
ACCCCATGCATCGACGAGAG+TGG 0.606737 2.4:-68881440 None:intergenic
ACGCACCGTCCCCGTTCGCG+AGG 0.609985 2.4:+68881393 MS.gene004249:CDS
GAAGAGGAATTATTCTGCCG+TGG 0.613185 2.4:+68881864 MS.gene004249:CDS
TCGTGGTGAAAATCCGGCAT+CGG 0.613818 2.4:-68881352 None:intergenic
ACAGAAACTGAGGCAGATGG+TGG 0.614677 2.4:+68882149 MS.gene004249:CDS
GGTGACACCGTCGCCTCCGG+TGG 0.615400 2.4:+68881747 MS.gene004249:CDS
AATTTCCGATGAGGAATCAA+CGG 0.616061 2.4:-68881775 None:intergenic
CGGTGGCGTTACCTCAGAAG+AGG 0.617929 2.4:+68881848 MS.gene004249:CDS
GTTATCAATTTCTTCACCGG+TGG 0.628483 2.4:+68881723 MS.gene004249:CDS
GAGTGGAAGAACAGAAACTG+AGG 0.631673 2.4:+68882139 MS.gene004249:CDS
AGAACAGAAACTGAGGCAGA+TGG 0.635950 2.4:+68882146 MS.gene004249:CDS
TCCACTCTCGTCGATGCATG+GGG 0.638750 2.4:+68881439 MS.gene004249:CDS
TGCGGTACATTCCACCGCGG+TGG 0.640964 2.4:+68881831 MS.gene004249:CDS
GAATTAGCAAATTTCCGATG+AGG 0.643473 2.4:-68881784 None:intergenic
CTGAGGTAACGCCACCGCGG+TGG 0.646102 2.4:-68881842 None:intergenic
TTAAGCGTGGAAAACCATCT+GGG 0.647441 2.4:+68882262 MS.gene004249:CDS
ATCAACGGAAGAGCCACCGG+AGG 0.652573 2.4:-68881760 None:intergenic
ACCAACAATCCTCGCGAACG+GGG 0.660501 2.4:-68881402 None:intergenic
CTTTCTGACGAAGATTACCA+CGG 0.666897 2.4:-68881483 None:intergenic
CGGTATCTTGAACTCAACCG+TGG 0.727584 2.4:+68881466 MS.gene004249:CDS
CAGCTGGAGAGAATTAAGCG+TGG 0.736726 2.4:+68882249 MS.gene004249:CDS
CTTCTGAGGTAACGCCACCG+CGG 0.741340 2.4:-68881845 None:intergenic
ACGGTGGTGTGAAAGAATCG+TGG 0.749435 2.4:-68881369 None:intergenic
AATTGCGGTACATTCCACCG+CGG 0.821763 2.4:+68881828 MS.gene004249:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACGATTAAGAAAAAGTATA+AGG + chr2.4:68881597-68881616 MS.gene004249:CDS 20.0%
! TATCAAATCACAAGCTAAAA+GGG - chr2.4:68882343-68882362 None:intergenic 25.0%
! TTATCAAATCACAAGCTAAA+AGG - chr2.4:68882344-68882363 None:intergenic 25.0%
!!! ATGGTGTTTTGAATTCTAAT+TGG + chr2.4:68881647-68881666 MS.gene004249:CDS 25.0%
ACATCTAACCGTTCAAAAAA+AGG - chr2.4:68881673-68881692 None:intergenic 30.0%
AGTATAAGGTTGAAAAAGCT+AGG + chr2.4:68881611-68881630 MS.gene004249:CDS 30.0%
ATCAAATCACAAGCTAAAAG+GGG - chr2.4:68882342-68882361 None:intergenic 30.0%
GAAGTTATCAATTTCTTCAC+CGG + chr2.4:68881720-68881739 MS.gene004249:CDS 30.0%
GTATAAGGTTGAAAAAGCTA+GGG + chr2.4:68881612-68881631 MS.gene004249:CDS 30.0%
! AACTTCTTAGCACTGAAATT+AGG - chr2.4:68881706-68881725 None:intergenic 30.0%
!! TTTTAGGAGGAATTATTCTG+CGG + chr2.4:68881921-68881940 MS.gene004249:intron 30.0%
!!! CTAATTGGCCTTTTTTTGAA+CGG + chr2.4:68881662-68881681 MS.gene004249:CDS 30.0%
AAAGAATCGTGGTGAAAATC+CGG - chr2.4:68881361-68881380 None:intergenic 35.0%
AATTTCCGATGAGGAATCAA+CGG - chr2.4:68881778-68881797 None:intergenic 35.0%
GAATTAGCAAATTTCCGATG+AGG - chr2.4:68881787-68881806 None:intergenic 35.0%
GTAATCTTCGTCAGAAAGAT+TGG + chr2.4:68881488-68881507 MS.gene004249:CDS 35.0%
TTATTCATCACCTGCAATTG+CGG + chr2.4:68881813-68881832 MS.gene004249:CDS 35.0%
!! CATCGGAAATTTGCTAATTC+TGG + chr2.4:68881787-68881806 MS.gene004249:CDS 35.0%
!!! GAACGGTTAGATGTTTTGAT+TGG + chr2.4:68881679-68881698 MS.gene004249:CDS 35.0%
!!! TGATGGATGATGGGTATTTT+AGG + chr2.4:68881905-68881924 MS.gene004249:intron 35.0%
AAGTGGATGAAGGGGATAAA+GGG + chr2.4:68882058-68882077 MS.gene004249:intron 40.0%
ATTAAGCGTGGAAAACCATC+TGG + chr2.4:68882261-68882280 MS.gene004249:CDS 40.0%
CTAAAGATCTTGAAGTGCAG+AGG + chr2.4:68882199-68882218 MS.gene004249:CDS 40.0%
CTTTCTGACGAAGATTACCA+CGG - chr2.4:68881486-68881505 None:intergenic 40.0%
GCAGAATAATTCCTCTTCTG+AGG - chr2.4:68881862-68881881 None:intergenic 40.0%
GGTTGAAAAAGCTAGGGTTA+CGG + chr2.4:68881618-68881637 MS.gene004249:CDS 40.0%
GTTATCAATTTCTTCACCGG+TGG + chr2.4:68881723-68881742 MS.gene004249:CDS 40.0%
TATGGATACTCAAGTTCAGC+TGG + chr2.4:68882233-68882252 MS.gene004249:CDS 40.0%
TGGTGAAATGTATGAGAGAG+TGG + chr2.4:68882122-68882141 MS.gene004249:CDS 40.0%
TTAAGCGTGGAAAACCATCT+GGG + chr2.4:68882262-68882281 MS.gene004249:CDS 40.0%
! ATCTGTGCGATGAGTTTTCT+TGG - chr2.4:68881554-68881573 None:intergenic 40.0%
!! CGGAAATTTGCTAATTCTGG+TGG + chr2.4:68881790-68881809 MS.gene004249:CDS 40.0%
!! TGGTGGATTTGGAGAAACAA+AGG + chr2.4:68882166-68882185 MS.gene004249:CDS 40.0%
!!! TGGATGATGGGTATTTTAGG+AGG + chr2.4:68881908-68881927 MS.gene004249:intron 40.0%
AAGGGGATAAAGGGAGAGAA+GGG + chr2.4:68882067-68882086 MS.gene004249:intron 45.0%
AGAACAGAAACTGAGGCAGA+TGG + chr2.4:68882146-68882165 MS.gene004249:CDS 45.0%
ATCAATTTCTTCACCGGTGG+CGG + chr2.4:68881726-68881745 MS.gene004249:CDS 45.0%
ATCTCACCATTAGACCCAGA+TGG - chr2.4:68882279-68882298 None:intergenic 45.0%
GAAGAGGAATTATTCTGCCG+TGG + chr2.4:68881864-68881883 MS.gene004249:CDS 45.0%
GAAGTGGATGAAGGGGATAA+AGG + chr2.4:68882057-68882076 MS.gene004249:intron 45.0%
GAGTGGAAGAACAGAAACTG+AGG + chr2.4:68882139-68882158 MS.gene004249:CDS 45.0%
GATGCTGTTAACGCTCTTCA+TGG + chr2.4:68881523-68881542 MS.gene004249:CDS 45.0%
GCAGAGGATGCAGATGTTTA+TGG + chr2.4:68882215-68882234 MS.gene004249:CDS 45.0%
GCTAGGGTTACGGAATCTAA+TGG + chr2.4:68881628-68881647 MS.gene004249:CDS 45.0%
GGAAAACCATCTGGGTCTAA+TGG + chr2.4:68882270-68882289 MS.gene004249:CDS 45.0%
TGGAAGTAGAGGAAGAGGAA+GGG + chr2.4:68882025-68882044 MS.gene004249:intron 45.0%
! AGCTGATGAGGATGATGATG+AGG + chr2.4:68881969-68881988 MS.gene004249:intron 45.0%
! GGATGATGATGAGGATGATG+AGG + chr2.4:68881978-68881997 MS.gene004249:intron 45.0%
! TGATGATGAGGATGATGAGG+TGG + chr2.4:68881981-68882000 MS.gene004249:intron 45.0%
!! CTCTTCCGTTGATTCCTCAT+CGG + chr2.4:68881770-68881789 MS.gene004249:CDS 45.0%
AAGGGAGAGAAGGGATGAAG+AGG + chr2.4:68882076-68882095 MS.gene004249:intron 50.0%
AAGTAGAGGAAGAGGAAGGG+AGG + chr2.4:68882028-68882047 MS.gene004249:intron 50.0%
AATTGCGGTACATTCCACCG+CGG + chr2.4:68881828-68881847 MS.gene004249:CDS 50.0%
ACAGAAACTGAGGCAGATGG+TGG + chr2.4:68882149-68882168 MS.gene004249:CDS 50.0%
ACGGTGGTGTGAAAGAATCG+TGG - chr2.4:68881372-68881391 None:intergenic 50.0%
AGAGGTGGAAGTAGAGGAAG+AGG + chr2.4:68882020-68882039 MS.gene004249:intron 50.0%
AGTAGAGGAAGAGGAAGGGA+GGG + chr2.4:68882029-68882048 MS.gene004249:intron 50.0%
CAGCTGGAGAGAATTAAGCG+TGG + chr2.4:68882249-68882268 MS.gene004249:CDS 50.0%
CGGTATCTTGAACTCAACCG+TGG + chr2.4:68881466-68881485 MS.gene004249:CDS 50.0%
GAAGGGGATAAAGGGAGAGA+AGG + chr2.4:68882066-68882085 MS.gene004249:intron 50.0%
GAATTATTCTGCCGTGGCTG+CGG + chr2.4:68881870-68881889 MS.gene004249:CDS 50.0%
GAGAGAAGGGATGAAGAGGT+TGG + chr2.4:68882080-68882099 MS.gene004249:intron 50.0%
GTGGAAGTAGAGGAAGAGGA+AGG + chr2.4:68882024-68882043 MS.gene004249:intron 50.0%
GTGGAATGTACCGCAATTGC+AGG - chr2.4:68881826-68881845 None:intergenic 50.0%
TGACCAACAATCCTCGCGAA+CGG - chr2.4:68881407-68881426 None:intergenic 50.0%
TGATGAGGATGATGAGGTGG+AGG + chr2.4:68881984-68882003 MS.gene004249:intron 50.0%
TGATGAGGTGGAGGAAGTTG+AGG + chr2.4:68881993-68882012 MS.gene004249:intron 50.0%
TTCCACTCTCGTCGATGCAT+GGG + chr2.4:68881438-68881457 MS.gene004249:CDS 50.0%
! GCGAAGGCGATAGAGAGTTT+TGG + chr2.4:68882102-68882121 MS.gene004249:intron 50.0%
!! ACTGAGGCAGATGGTGGATT+TGG + chr2.4:68882155-68882174 MS.gene004249:CDS 50.0%
!! ACTGCTACGGTGATGGATGA+TGG + chr2.4:68881895-68881914 MS.gene004249:intron 50.0%
!! CTGCTACGGTGATGGATGAT+GGG + chr2.4:68881896-68881915 MS.gene004249:intron 50.0%
ACCAACAATCCTCGCGAACG+GGG - chr2.4:68881405-68881424 None:intergenic 55.0%
AGGGATGAAGAGGTTGGCGA+AGG + chr2.4:68882086-68882105 MS.gene004249:intron 55.0%
AGGGGGAGTGAAGTGGATGA+AGG + chr2.4:68882048-68882067 MS.gene004249:intron 55.0%
CTTCCACTCTCGTCGATGCA+TGG + chr2.4:68881437-68881456 MS.gene004249:CDS 55.0%
GACCAACAATCCTCGCGAAC+GGG - chr2.4:68881406-68881425 None:intergenic 55.0%
GGAAGTTGAGGAGGAAGAGG+TGG + chr2.4:68882005-68882024 MS.gene004249:intron 55.0%
GGAATCAACGGAAGAGCCAC+CGG - chr2.4:68881766-68881785 None:intergenic 55.0%
GGAGGAAGAGGTGGAAGTAG+AGG + chr2.4:68882014-68882033 MS.gene004249:intron 55.0%
GGAGGAAGTTGAGGAGGAAG+AGG + chr2.4:68882002-68882021 MS.gene004249:intron 55.0%
GGGGAGTGAAGTGGATGAAG+GGG + chr2.4:68882050-68882069 MS.gene004249:intron 55.0%
GGGGGAGTGAAGTGGATGAA+GGG + chr2.4:68882049-68882068 MS.gene004249:intron 55.0%
GTAGAGGAAGAGGAAGGGAG+GGG + chr2.4:68882030-68882049 MS.gene004249:intron 55.0%
TAGAGGAAGAGGAAGGGAGG+GGG + chr2.4:68882031-68882050 MS.gene004249:intron 55.0%
TCCACTCTCGTCGATGCATG+GGG + chr2.4:68881439-68881458 MS.gene004249:CDS 55.0%
TGAGGTGGAGGAAGTTGAGG+AGG + chr2.4:68881996-68882015 MS.gene004249:intron 55.0%
ACAATCCTCGCGAACGGGGA+CGG - chr2.4:68881401-68881420 None:intergenic 60.0%
ATCAACGGAAGAGCCACCGG+AGG - chr2.4:68881763-68881782 None:intergenic 60.0%
ATCAGCTTCCGCAGCAGCAG+CGG - chr2.4:68881956-68881975 None:intergenic 60.0%
CGGTGGCGTTACCTCAGAAG+AGG + chr2.4:68881848-68881867 MS.gene004249:CDS 60.0%
TCCCCGTTCGCGAGGATTGT+TGG + chr2.4:68881401-68881420 MS.gene004249:CDS 60.0%
TCGTCGATGCATGGGGTCGT+CGG + chr2.4:68881446-68881465 MS.gene004249:CDS 60.0%
TGCGGCTACTGCTACGGTGA+TGG + chr2.4:68881888-68881907 MS.gene004249:intron 60.0%
TGCTGCTGCGGAAGCTGATG+AGG + chr2.4:68881957-68881976 MS.gene004249:intron 60.0%
! ACCCCATGCATCGACGAGAG+TGG - chr2.4:68881443-68881462 None:intergenic 60.0%
!! CTTCTGAGGTAACGCCACCG+CGG - chr2.4:68881848-68881867 None:intergenic 60.0%
CGTAGCAGTAGCCGCAGCCA+CGG - chr2.4:68881884-68881903 None:intergenic 65.0%
CGTGGCTGCGGCTACTGCTA+CGG + chr2.4:68881882-68881901 MS.gene004249:CDS 65.0%
GGAAGGGAGGGGGAGTGAAG+TGG + chr2.4:68882041-68882060 MS.gene004249:intron 65.0%
TGCGGTACATTCCACCGCGG+TGG + chr2.4:68881831-68881850 MS.gene004249:CDS 65.0%
AGCTGCAGCCGCTGCTGCTG+CGG + chr2.4:68881945-68881964 MS.gene004249:intron 70.0%
CGAACGGGGACGGTGCGTGA+CGG - chr2.4:68881391-68881410 None:intergenic 70.0%
CTGAGGTAACGCCACCGCGG+TGG - chr2.4:68881845-68881864 None:intergenic 70.0%
GGAAGAGCCACCGGAGGCGA+CGG - chr2.4:68881757-68881776 None:intergenic 70.0%
ACGCACCGTCCCCGTTCGCG+AGG + chr2.4:68881393-68881412 MS.gene004249:CDS 75.0%
ACGGGGACGGTGCGTGACGG+TGG - chr2.4:68881388-68881407 None:intergenic 75.0%
GGCGGTGACACCGTCGCCTC+CGG + chr2.4:68881744-68881763 MS.gene004249:CDS 75.0%
GGTGACACCGTCGCCTCCGG+TGG + chr2.4:68881747-68881766 MS.gene004249:CDS 75.0%
!! GGCGACGGTGTCACCGCCAC+CGG - chr2.4:68881742-68881761 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 68881355 68882368 68881355 ID=MS.gene004249
chr2.4 mRNA 68881355 68882368 68881355 ID=MS.gene004249.t1;Parent=MS.gene004249
chr2.4 exon 68881355 68881903 68881355 ID=MS.gene004249.t1.exon1;Parent=MS.gene004249.t1
chr2.4 CDS 68881355 68881903 68881355 ID=cds.MS.gene004249.t1;Parent=MS.gene004249.t1
chr2.4 exon 68882108 68882291 68882108 ID=MS.gene004249.t1.exon2;Parent=MS.gene004249.t1
chr2.4 CDS 68882108 68882291 68882108 ID=cds.MS.gene004249.t1;Parent=MS.gene004249.t1
chr2.4 exon 68882349 68882368 68882349 ID=MS.gene004249.t1.exon3;Parent=MS.gene004249.t1
chr2.4 CDS 68882349 68882368 68882349 ID=cds.MS.gene004249.t1;Parent=MS.gene004249.t1
Gene Sequence

>MS.gene004249

ATGCCGGATTTTCACCACGATTCTTTCACACCACCGTCACGCACCGTCCCCGTTCGCGAGGATTGTTGGTCAGAAGAAGCTTCTTCCACTCTCGTCGATGCATGGGGTCGTCGGTATCTTGAACTCAACCGTGGTAATCTTCGTCAGAAAGATTGGCAAGATGTTGCTGATGCTGTTAACGCTCTTCATGGTCATACCAAGAAAACTCATCGCACAGATGTTCAGTGTAAGAATCGAATCGATACGATTAAGAAAAAGTATAAGGTTGAAAAAGCTAGGGTTACGGAATCTAATGGTGTTTTGAATTCTAATTGGCCTTTTTTTGAACGGTTAGATGTTTTGATTGGACCTAATTTCAGTGCTAAGAAGTTATCAATTTCTTCACCGGTGGCGGTGACACCGTCGCCTCCGGTGGCTCTTCCGTTGATTCCTCATCGGAAATTTGCTAATTCTGGTGGTTATTCATCACCTGCAATTGCGGTACATTCCACCGCGGTGGCGTTACCTCAGAAGAGGAATTATTCTGCCGTGGCTGCGGCTACTGCTACGGTGATGGATGATGGGTATTTTAGGAGGAATTATTCTGCGGTAGCTGCAGCCGCTGCTGCTGCGGAAGCTGATGAGGATGATGATGAGGATGATGAGGTGGAGGAAGTTGAGGAGGAAGAGGTGGAAGTAGAGGAAGAGGAAGGGAGGGGGAGTGAAGTGGATGAAGGGGATAAAGGGAGAGAAGGGATGAAGAGGTTGGCGAAGGCGATAGAGAGTTTTGGTGAAATGTATGAGAGAGTGGAAGAACAGAAACTGAGGCAGATGGTGGATTTGGAGAAACAAAGGATGCAGTTTGCTAAAGATCTTGAAGTGCAGAGGATGCAGATGTTTATGGATACTCAAGTTCAGCTGGAGAGAATTAAGCGTGGAAAACCATCTGGGTCTAATGGTGAGATATAAAGTAAAGTAATTTAAGCTTTTTAATTGTTTTTGTTTCCCCTTTTAGCTTGTGATTTGATAATTTAA
Protein sequence

>MS.gene004249.t1

MPDFHHDSFTPPSRTVPVREDCWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKVEKARVTESNGVLNSNWPFFERLDVLIGPNFSAKKLSISSPVAVTPSPPVALPLIPHRKFANSGGYSSPAIAVHSTAVALPQKRNYSAVAAATATAIESFGEMYERVEEQKLRQMVDLEKQRMQFAKDLEVQRMQMFMDTQVQLERIKRGKPSGSNACDLII