Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004257.t1 | XP_013462567.1 | 92.2 | 243 | 19 | 0 | 1 | 243 | 1 | 243 | 1.80E-121 | 445.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004257.t1 | Q9FJK3 | 41.6 | 178 | 98 | 2 | 1 | 173 | 1 | 177 | 5.4e-29 | 129.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004257.t1 | G7ZXK2 | 92.2 | 243 | 19 | 0 | 1 | 243 | 1 | 243 | 1.3e-121 | 445.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene004257.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004257.t1 | MTR_2g016210 | 92.181 | 243 | 19 | 0 | 1 | 243 | 1 | 243 | 9.04e-169 | 465 |
MS.gene004257.t1 | MTR_3g031100 | 42.424 | 231 | 124 | 3 | 1 | 227 | 1 | 226 | 2.61e-57 | 182 |
MS.gene004257.t1 | MTR_3g466980 | 47.486 | 179 | 91 | 2 | 1 | 177 | 1 | 178 | 2.73e-49 | 161 |
MS.gene004257.t1 | MTR_4g063790 | 45.509 | 167 | 91 | 0 | 1 | 167 | 1 | 167 | 2.21e-47 | 155 |
MS.gene004257.t1 | MTR_3g031240 | 43.558 | 163 | 92 | 0 | 1 | 163 | 1 | 163 | 4.43e-41 | 139 |
MS.gene004257.t1 | MTR_3g467080 | 43.590 | 156 | 88 | 0 | 5 | 160 | 5 | 160 | 4.88e-41 | 138 |
MS.gene004257.t1 | MTR_8g036130 | 46.250 | 160 | 84 | 1 | 1 | 158 | 1 | 160 | 7.40e-40 | 138 |
MS.gene004257.t1 | MTR_5g075380 | 37.342 | 158 | 98 | 1 | 1 | 158 | 1 | 157 | 3.51e-37 | 128 |
MS.gene004257.t1 | MTR_3g465410 | 43.972 | 141 | 79 | 0 | 29 | 169 | 1 | 141 | 9.50e-37 | 127 |
MS.gene004257.t1 | MTR_4g032620 | 37.500 | 200 | 111 | 2 | 1 | 200 | 1 | 186 | 9.79e-37 | 129 |
MS.gene004257.t1 | MTR_3g065100 | 47.742 | 155 | 80 | 1 | 1 | 155 | 1 | 154 | 1.93e-36 | 129 |
MS.gene004257.t1 | MTR_4g031910 | 42.949 | 156 | 89 | 0 | 1 | 156 | 1 | 156 | 5.67e-34 | 122 |
MS.gene004257.t1 | MTR_2g035580 | 39.873 | 158 | 94 | 1 | 1 | 158 | 1 | 157 | 4.16e-29 | 107 |
MS.gene004257.t1 | MTR_4g032290 | 41.358 | 162 | 95 | 0 | 1 | 162 | 1 | 162 | 4.19e-29 | 109 |
MS.gene004257.t1 | MTR_3g466830 | 39.456 | 147 | 88 | 1 | 4 | 150 | 3 | 148 | 1.13e-28 | 106 |
MS.gene004257.t1 | MTR_4g032260 | 40.252 | 159 | 95 | 0 | 1 | 159 | 1 | 159 | 1.41e-28 | 106 |
MS.gene004257.t1 | MTR_1g077390 | 39.073 | 151 | 90 | 2 | 1 | 151 | 1 | 149 | 5.37e-28 | 104 |
MS.gene004257.t1 | MTR_1g090697 | 39.490 | 157 | 91 | 3 | 1 | 156 | 1 | 154 | 9.30e-28 | 104 |
MS.gene004257.t1 | MTR_5g047580 | 37.086 | 151 | 93 | 2 | 1 | 151 | 1 | 149 | 5.46e-27 | 102 |
MS.gene004257.t1 | MTR_2g035610 | 44.444 | 117 | 65 | 0 | 1 | 117 | 1 | 117 | 1.29e-25 | 97.4 |
MS.gene004257.t1 | MTR_1g090783 | 36.129 | 155 | 97 | 2 | 4 | 158 | 3 | 155 | 2.39e-24 | 95.1 |
MS.gene004257.t1 | MTR_1g090710 | 34.615 | 156 | 101 | 1 | 1 | 156 | 1 | 155 | 1.58e-23 | 93.2 |
MS.gene004257.t1 | MTR_3g466890 | 34.667 | 150 | 97 | 1 | 5 | 154 | 4 | 152 | 2.62e-23 | 92.8 |
MS.gene004257.t1 | MTR_1g077320 | 38.365 | 159 | 96 | 2 | 1 | 159 | 1 | 157 | 3.61e-23 | 92.4 |
MS.gene004257.t1 | MTR_7g011950 | 38.365 | 159 | 96 | 2 | 1 | 159 | 1 | 157 | 1.40e-22 | 90.9 |
MS.gene004257.t1 | MTR_4g028720 | 37.107 | 159 | 98 | 2 | 1 | 159 | 1 | 157 | 2.70e-21 | 87.4 |
MS.gene004257.t1 | MTR_4g028800 | 55.714 | 70 | 29 | 1 | 1 | 70 | 1 | 68 | 2.77e-21 | 84.7 |
MS.gene004257.t1 | MTR_3g093900 | 32.051 | 156 | 95 | 2 | 4 | 159 | 7 | 151 | 6.17e-21 | 91.7 |
MS.gene004257.t1 | MTR_1g084950 | 35.256 | 156 | 99 | 2 | 1 | 156 | 1 | 154 | 6.06e-20 | 83.6 |
MS.gene004257.t1 | MTR_4g019670 | 31.973 | 147 | 96 | 2 | 4 | 150 | 7 | 149 | 6.41e-19 | 85.5 |
MS.gene004257.t1 | MTR_1g077300 | 37.013 | 154 | 93 | 3 | 1 | 154 | 1 | 150 | 6.49e-19 | 80.9 |
MS.gene004257.t1 | MTR_7g106510 | 30.612 | 147 | 98 | 2 | 4 | 150 | 7 | 149 | 2.33e-18 | 84.0 |
MS.gene004257.t1 | MTR_3g466900 | 33.613 | 119 | 78 | 1 | 32 | 150 | 2 | 119 | 1.11e-15 | 71.6 |
MS.gene004257.t1 | MTR_3g466930 | 34.454 | 119 | 77 | 1 | 32 | 150 | 2 | 119 | 5.79e-15 | 69.7 |
MS.gene004257.t1 | MTR_4g045977 | 25.641 | 156 | 106 | 2 | 1 | 154 | 1 | 148 | 9.45e-14 | 70.1 |
MS.gene004257.t1 | MTR_1g114730 | 33.333 | 108 | 64 | 4 | 3 | 103 | 2 | 108 | 4.09e-13 | 68.2 |
MS.gene004257.t1 | MTR_4g107170 | 22.018 | 218 | 148 | 5 | 3 | 208 | 2 | 209 | 6.20e-12 | 63.9 |
MS.gene004257.t1 | MTR_5g047560 | 29.139 | 151 | 89 | 3 | 1 | 151 | 1 | 133 | 7.57e-12 | 61.6 |
MS.gene004257.t1 | MTR_6g018920 | 31.481 | 108 | 66 | 4 | 3 | 103 | 2 | 108 | 9.08e-12 | 64.3 |
MS.gene004257.t1 | MTR_6g005440 | 26.415 | 159 | 101 | 5 | 3 | 154 | 2 | 151 | 3.33e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004257.t1 | AT5G48670 | 44.516 | 155 | 85 | 1 | 1 | 155 | 1 | 154 | 1.02e-31 | 119 |
MS.gene004257.t1 | AT3G05860 | 36.723 | 177 | 107 | 2 | 1 | 175 | 1 | 174 | 3.01e-31 | 115 |
MS.gene004257.t1 | AT3G05860 | 36.723 | 177 | 107 | 2 | 1 | 175 | 1 | 174 | 3.30e-31 | 114 |
MS.gene004257.t1 | AT3G05860 | 36.723 | 177 | 107 | 2 | 1 | 175 | 1 | 174 | 4.30e-31 | 115 |
MS.gene004257.t1 | AT1G65300 | 36.184 | 152 | 96 | 1 | 4 | 155 | 3 | 153 | 1.85e-29 | 112 |
MS.gene004257.t1 | AT5G27960 | 36.129 | 155 | 94 | 2 | 4 | 156 | 2 | 153 | 2.35e-27 | 107 |
MS.gene004257.t1 | AT5G26650 | 36.601 | 153 | 96 | 1 | 4 | 156 | 2 | 153 | 3.90e-27 | 107 |
MS.gene004257.t1 | AT1G65330 | 35.099 | 151 | 97 | 1 | 5 | 155 | 4 | 153 | 2.40e-25 | 101 |
MS.gene004257.t1 | AT2G28700 | 30.189 | 212 | 139 | 4 | 1 | 208 | 1 | 207 | 3.06e-23 | 96.3 |
MS.gene004257.t1 | AT1G31640 | 33.775 | 151 | 94 | 3 | 5 | 153 | 4 | 150 | 7.48e-22 | 94.0 |
MS.gene004257.t1 | AT1G31630 | 31.973 | 147 | 98 | 2 | 5 | 151 | 4 | 148 | 8.84e-22 | 92.4 |
MS.gene004257.t1 | AT1G22590 | 31.013 | 158 | 105 | 1 | 1 | 158 | 1 | 154 | 1.11e-20 | 85.9 |
MS.gene004257.t1 | AT5G27810 | 40.860 | 93 | 55 | 0 | 29 | 121 | 1 | 93 | 1.19e-19 | 82.0 |
MS.gene004257.t1 | AT2G40210 | 35.915 | 142 | 89 | 1 | 1 | 142 | 1 | 140 | 1.01e-18 | 84.3 |
MS.gene004257.t1 | AT5G26580 | 31.210 | 157 | 89 | 3 | 1 | 155 | 1 | 140 | 2.14e-17 | 80.5 |
MS.gene004257.t1 | AT5G06500 | 29.630 | 162 | 110 | 2 | 1 | 161 | 1 | 159 | 8.89e-17 | 77.4 |
MS.gene004257.t1 | AT5G26630 | 33.548 | 155 | 102 | 1 | 1 | 155 | 1 | 154 | 9.02e-16 | 73.9 |
MS.gene004257.t1 | AT5G55690 | 45.455 | 77 | 34 | 3 | 3 | 71 | 2 | 78 | 4.01e-15 | 73.2 |
MS.gene004257.t1 | AT5G55690 | 45.455 | 77 | 34 | 3 | 3 | 71 | 2 | 78 | 4.01e-15 | 73.2 |
MS.gene004257.t1 | AT5G58890 | 42.308 | 78 | 38 | 2 | 1 | 71 | 1 | 78 | 8.42e-14 | 69.7 |
MS.gene004257.t1 | AT2G15660 | 28.182 | 110 | 77 | 2 | 38 | 147 | 31 | 138 | 6.18e-11 | 61.2 |
Find 64 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAAATACTTTAGTAATAAAT+TGG | 0.162034 | 2.4:+68814965 | None:intergenic |
AATAGGTAATGAGGGTAATA+AGG | 0.250530 | 2.4:-68814785 | MS.gene004257:CDS |
AGGAGATATGCAAGCTAATA+TGG | 0.251220 | 2.4:-68814737 | MS.gene004257:CDS |
CTTCAGATTGTTATCTATAA+AGG | 0.253823 | 2.4:+68814885 | None:intergenic |
TTGGATAGCAACATGAATTA+TGG | 0.300972 | 2.4:-68814691 | MS.gene004257:CDS |
TTGATCATCGTTGTCATGAC+TGG | 0.312663 | 2.4:-68815669 | None:intergenic |
ATACGGACATTAATGGTCTT+TGG | 0.313083 | 2.4:-68814606 | MS.gene004257:CDS |
GATAACACATTTCTTGTTGC+AGG | 0.342611 | 2.4:+68815123 | None:intergenic |
GGTAATAAGGGTGATGCATC+AGG | 0.346713 | 2.4:-68814772 | MS.gene004257:CDS |
TGCCTTCCTGCTCGATGAAT+TGG | 0.351091 | 2.4:+68815620 | None:intergenic |
TTCAATAGGTTTGCTAAAGA+AGG | 0.384024 | 2.4:-68815235 | MS.gene004257:intron |
GCAGAAGATATGAATGGAAT+AGG | 0.400967 | 2.4:-68814802 | MS.gene004257:CDS |
AGCATTTCATGATGTTAATA+CGG | 0.402387 | 2.4:-68814623 | MS.gene004257:CDS |
GAAGCATGCGCAATAATCTT+TGG | 0.415897 | 2.4:-68815183 | MS.gene004257:CDS |
GATGTTAATACGGACATTAA+TGG | 0.419770 | 2.4:-68814613 | MS.gene004257:CDS |
ATTGTTGTTGAAGAAACAAA+TGG | 0.421492 | 2.4:-68815013 | MS.gene004257:CDS |
ATTGAGATTTCGCTATACTT+TGG | 0.431628 | 2.4:+68815034 | None:intergenic |
GGACCTTGTGGCCAAACCTC+TGG | 0.435290 | 2.4:+68815144 | None:intergenic |
TCTCAAGAGGAAGCTGGAAA+TGG | 0.439401 | 2.4:-68814826 | MS.gene004257:CDS |
ACAATGCTCAACCAGAGGTT+TGG | 0.442796 | 2.4:-68815155 | MS.gene004257:CDS |
ACAATCTGAAGAAAATTGAT+TGG | 0.445024 | 2.4:-68814873 | MS.gene004257:CDS |
TTCAGGCAAGTGTAGGAACT+TGG | 0.447788 | 2.4:+68815101 | None:intergenic |
AAATACTTTAGTAATAAATT+GGG | 0.448846 | 2.4:+68814966 | None:intergenic |
CTCATTCATGTTCACATCCT+CGG | 0.449631 | 2.4:+68814924 | None:intergenic |
ATAGGTAATGAGGGTAATAA+GGG | 0.483783 | 2.4:-68814784 | MS.gene004257:CDS |
ATTACTAAAGTATTTAGTAC+TGG | 0.490777 | 2.4:-68814958 | MS.gene004257:CDS |
TCATTCATGTTCACATCCTC+GGG | 0.496079 | 2.4:+68814925 | None:intergenic |
TGGTGCTGATGTCCAAGGTT+TGG | 0.501853 | 2.4:-68814710 | MS.gene004257:CDS |
TGTTATCTATAAAGGCCATC+AGG | 0.507830 | 2.4:+68814893 | None:intergenic |
TATGAATGGAATAGGTAATG+AGG | 0.512938 | 2.4:-68814794 | MS.gene004257:CDS |
ATTCAATCTCAAGAGGAAGC+TGG | 0.518424 | 2.4:-68814832 | MS.gene004257:CDS |
CAACCAGAGGTTTGGCCACA+AGG | 0.519368 | 2.4:-68815147 | MS.gene004257:CDS |
TGATCATCGTTGTCATGACT+GGG | 0.524662 | 2.4:-68815668 | None:intergenic |
TCATGTTGCTATCCAAACCT+TGG | 0.527597 | 2.4:+68814698 | None:intergenic |
ATGAATGGAATAGGTAATGA+GGG | 0.529671 | 2.4:-68814793 | MS.gene004257:CDS |
AATGGAGCAGAAGATATGAA+TGG | 0.530854 | 2.4:-68814808 | MS.gene004257:CDS |
ATCTGAAGAAAATTGATTGG+AGG | 0.531271 | 2.4:-68814870 | MS.gene004257:CDS |
GGAGATATGCAAGCTAATAT+GGG | 0.531775 | 2.4:-68814736 | MS.gene004257:CDS |
CGTTGTCATGACTGGGAGGA+AGG | 0.534161 | 2.4:-68815661 | None:intergenic |
GTTCGATTTCAGGCAAGTGT+AGG | 0.534412 | 2.4:+68815094 | None:intergenic |
TTTCTTGTTGCAGGACCTTG+TGG | 0.537057 | 2.4:+68815132 | None:intergenic |
ACATAGCCAATTCATCGAGC+AGG | 0.541522 | 2.4:-68815626 | MS.gene004257:CDS |
TGATTGGAGGTTGCAATCGA+CGG | 0.558130 | 2.4:-68814857 | MS.gene004257:CDS |
TAAGGGTGATGCATCAGGGC+TGG | 0.558559 | 2.4:-68814767 | MS.gene004257:CDS |
TGATTATCAAGATCCACCTT+GGG | 0.562050 | 2.4:-68814659 | MS.gene004257:CDS |
GTGATTATCAAGATCCACCT+TGG | 0.566592 | 2.4:-68814660 | MS.gene004257:CDS |
ATGCAAGCTAATATGGGCCA+TGG | 0.597067 | 2.4:-68814730 | MS.gene004257:CDS |
TAGCAACATGAATTATGGCA+TGG | 0.605759 | 2.4:-68814686 | MS.gene004257:CDS |
ATGAAATCAGCACTCTATGT+GGG | 0.608529 | 2.4:-68815209 | MS.gene004257:CDS |
AATGAAATCAGCACTCTATG+TGG | 0.614486 | 2.4:-68815210 | MS.gene004257:CDS |
GACGGAAATTCAATCTCAAG+AGG | 0.615492 | 2.4:-68814839 | MS.gene004257:CDS |
GCATCAGGGCTGGTGAATGT+AGG | 0.618345 | 2.4:-68814757 | MS.gene004257:CDS |
GGCCATGGTGCTGATGTCCA+AGG | 0.619615 | 2.4:-68814715 | MS.gene004257:CDS |
GAATGAGCTGAATGACCTGA+TGG | 0.627003 | 2.4:-68814908 | MS.gene004257:CDS |
AACATCATGAAATGCTAACA+TGG | 0.649787 | 2.4:+68814630 | None:intergenic |
GTAATAAGGGTGATGCATCA+GGG | 0.652229 | 2.4:-68814771 | MS.gene004257:CDS |
GTTGTTGAAGAAACAAATGG+AGG | 0.654091 | 2.4:-68815010 | MS.gene004257:CDS |
AGCCAATTCATCGAGCAGGA+AGG | 0.659357 | 2.4:-68815622 | MS.gene004257:CDS |
GCTAACATGGAGAAGTCCCA+AGG | 0.667501 | 2.4:+68814643 | None:intergenic |
TACTGGACAATATCGTCCCG+AGG | 0.674998 | 2.4:-68814941 | MS.gene004257:CDS |
AACCTTGGACATCAGCACCA+TGG | 0.676746 | 2.4:+68814713 | None:intergenic |
TGAAAACAATGCTCAACCAG+AGG | 0.685492 | 2.4:-68815160 | MS.gene004257:CDS |
AACATGGAGAAGTCCCAAGG+TGG | 0.697499 | 2.4:+68814646 | None:intergenic |
TCATCGTTGTCATGACTGGG+AGG | 0.723014 | 2.4:-68815665 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATACTTTAGTAATAAATT+GGG | + | chr2.4:68815288-68815307 | None:intergenic | 10.0% |
!! | TAAATACTTTAGTAATAAAT+TGG | + | chr2.4:68815289-68815308 | None:intergenic | 10.0% |
!!! | TTCACTTTATTTTATTTTTT+TGG | - | chr2.4:68814919-68814938 | MS.gene004257:CDS | 10.0% |
!!! | AACTATATATGTTTTTCAAT+AGG | - | chr2.4:68815002-68815021 | MS.gene004257:CDS | 15.0% |
!! | ATTGAATTTAAACAAACTCA+AGG | - | chr2.4:68814846-68814865 | MS.gene004257:CDS | 20.0% |
!! | TAATGGTATGAAAATGATTT+AGG | - | chr2.4:68814758-68814777 | MS.gene004257:CDS | 20.0% |
!! | TACCATTAATCATTATCTAA+TGG | + | chr2.4:68814746-68814765 | None:intergenic | 20.0% |
!! | TACCATTAGATAATGATTAA+TGG | - | chr2.4:68814741-68814760 | MS.gene004257:CDS | 20.0% |
!! | TGAAAAACATATATAGTTAG+AGG | + | chr2.4:68815000-68815019 | None:intergenic | 20.0% |
!! | TTGAATTTAAACAAACTCAA+GGG | - | chr2.4:68814847-68814866 | MS.gene004257:CDS | 20.0% |
!!! | ATTACTAAAGTATTTAGTAC+TGG | - | chr2.4:68815293-68815312 | MS.gene004257:intron | 20.0% |
!!! | TAACATCTATATAATTTGCA+TGG | + | chr2.4:68814723-68814742 | None:intergenic | 20.0% |
! | ACAATCTGAAGAAAATTGAT+TGG | - | chr2.4:68815378-68815397 | MS.gene004257:intron | 25.0% |
! | AGCATTTCATGATGTTAATA+CGG | - | chr2.4:68815628-68815647 | MS.gene004257:CDS | 25.0% |
! | CTTCAGATTGTTATCTATAA+AGG | + | chr2.4:68815369-68815388 | None:intergenic | 25.0% |
!! | ATTGTTGTTGAAGAAACAAA+TGG | - | chr2.4:68815238-68815257 | MS.gene004257:intron | 25.0% |
!! | TACACGCTTTATTGAAAATA+AGG | + | chr2.4:68814696-68814715 | None:intergenic | 25.0% |
AACATCATGAAATGCTAACA+TGG | + | chr2.4:68815624-68815643 | None:intergenic | 30.0% | |
AATAGGTAATGAGGGTAATA+AGG | - | chr2.4:68815466-68815485 | MS.gene004257:intron | 30.0% | |
AATCGAACGAAGCAAAAATA+TGG | - | chr2.4:68815172-68815191 | MS.gene004257:CDS | 30.0% | |
AATTCAATCTCTTACTAGTG+AGG | + | chr2.4:68814834-68814853 | None:intergenic | 30.0% | |
ATAGGTAATGAGGGTAATAA+GGG | - | chr2.4:68815467-68815486 | MS.gene004257:intron | 30.0% | |
ATCTGAAGAAAATTGATTGG+AGG | - | chr2.4:68815381-68815400 | MS.gene004257:intron | 30.0% | |
ATGAATGGAATAGGTAATGA+GGG | - | chr2.4:68815458-68815477 | MS.gene004257:intron | 30.0% | |
ATTGAGATTTCGCTATACTT+TGG | + | chr2.4:68815220-68815239 | None:intergenic | 30.0% | |
GATGTTAATACGGACATTAA+TGG | - | chr2.4:68815638-68815657 | MS.gene004257:CDS | 30.0% | |
TATGAATGGAATAGGTAATG+AGG | - | chr2.4:68815457-68815476 | MS.gene004257:intron | 30.0% | |
TTGGATAGCAACATGAATTA+TGG | - | chr2.4:68815560-68815579 | MS.gene004257:intron | 30.0% | |
!! | TTCAATAGGTTTGCTAAAGA+AGG | - | chr2.4:68815016-68815035 | MS.gene004257:CDS | 30.0% |
AATGAAATCAGCACTCTATG+TGG | - | chr2.4:68815041-68815060 | MS.gene004257:CDS | 35.0% | |
AATGGAGCAGAAGATATGAA+TGG | - | chr2.4:68815443-68815462 | MS.gene004257:intron | 35.0% | |
AGCTACAAAAAAAGGAAAGC+TGG | - | chr2.4:68814654-68814673 | MS.gene004257:CDS | 35.0% | |
AGGAGATATGCAAGCTAATA+TGG | - | chr2.4:68815514-68815533 | MS.gene004257:intron | 35.0% | |
ATACGGACATTAATGGTCTT+TGG | - | chr2.4:68815645-68815664 | MS.gene004257:CDS | 35.0% | |
ATGAAATCAGCACTCTATGT+GGG | - | chr2.4:68815042-68815061 | MS.gene004257:CDS | 35.0% | |
GATAACACATTTCTTGTTGC+AGG | + | chr2.4:68815131-68815150 | None:intergenic | 35.0% | |
GCAGAAGATATGAATGGAAT+AGG | - | chr2.4:68815449-68815468 | MS.gene004257:intron | 35.0% | |
GGAGATATGCAAGCTAATAT+GGG | - | chr2.4:68815515-68815534 | MS.gene004257:intron | 35.0% | |
GTTGTTGAAGAAACAAATGG+AGG | - | chr2.4:68815241-68815260 | MS.gene004257:intron | 35.0% | |
TAGCAACATGAATTATGGCA+TGG | - | chr2.4:68815565-68815584 | MS.gene004257:intron | 35.0% | |
TGATTATCAAGATCCACCTT+GGG | - | chr2.4:68815592-68815611 | MS.gene004257:intron | 35.0% | |
TGTTATCTATAAAGGCCATC+AGG | + | chr2.4:68815361-68815380 | None:intergenic | 35.0% | |
! | TTTTTGCTTCGTTCGATTTC+AGG | + | chr2.4:68815170-68815189 | None:intergenic | 35.0% |
ATTCAATCTCAAGAGGAAGC+TGG | - | chr2.4:68815419-68815438 | MS.gene004257:intron | 40.0% | |
CGAACGAAGCAAAAATATGG+TGG | - | chr2.4:68815175-68815194 | MS.gene004257:CDS | 40.0% | |
CTCATTCATGTTCACATCCT+CGG | + | chr2.4:68815330-68815349 | None:intergenic | 40.0% | |
GAAGCATGCGCAATAATCTT+TGG | - | chr2.4:68815068-68815087 | MS.gene004257:CDS | 40.0% | |
GACGGAAATTCAATCTCAAG+AGG | - | chr2.4:68815412-68815431 | MS.gene004257:intron | 40.0% | |
GGAAGGCAAGCTACAAAAAA+AGG | - | chr2.4:68814646-68814665 | MS.gene004257:CDS | 40.0% | |
GTAATAAGGGTGATGCATCA+GGG | - | chr2.4:68815480-68815499 | MS.gene004257:intron | 40.0% | |
GTGATTATCAAGATCCACCT+TGG | - | chr2.4:68815591-68815610 | MS.gene004257:intron | 40.0% | |
TCATGTTGCTATCCAAACCT+TGG | + | chr2.4:68815556-68815575 | None:intergenic | 40.0% | |
TCATTCATGTTCACATCCTC+GGG | + | chr2.4:68815329-68815348 | None:intergenic | 40.0% | |
TGAAAACAATGCTCAACCAG+AGG | - | chr2.4:68815091-68815110 | MS.gene004257:CDS | 40.0% | |
ACAATGCTCAACCAGAGGTT+TGG | - | chr2.4:68815096-68815115 | MS.gene004257:CDS | 45.0% | |
ACATAGCCAATTCATCGAGC+AGG | - | chr2.4:68814625-68814644 | MS.gene004257:CDS | 45.0% | |
ATGCAAGCTAATATGGGCCA+TGG | - | chr2.4:68815521-68815540 | MS.gene004257:intron | 45.0% | |
GAATGAGCTGAATGACCTGA+TGG | - | chr2.4:68815343-68815362 | MS.gene004257:intron | 45.0% | |
GGTAATAAGGGTGATGCATC+AGG | - | chr2.4:68815479-68815498 | MS.gene004257:intron | 45.0% | |
GTTCGATTTCAGGCAAGTGT+AGG | + | chr2.4:68815160-68815179 | None:intergenic | 45.0% | |
TCTCAAGAGGAAGCTGGAAA+TGG | - | chr2.4:68815425-68815444 | MS.gene004257:intron | 45.0% | |
TGATTGGAGGTTGCAATCGA+CGG | - | chr2.4:68815394-68815413 | MS.gene004257:intron | 45.0% | |
TTCAGGCAAGTGTAGGAACT+TGG | + | chr2.4:68815153-68815172 | None:intergenic | 45.0% | |
TTTCTTGTTGCAGGACCTTG+TGG | + | chr2.4:68815122-68815141 | None:intergenic | 45.0% | |
AACATGGAGAAGTCCCAAGG+TGG | + | chr2.4:68815608-68815627 | None:intergenic | 50.0% | |
AACCTTGGACATCAGCACCA+TGG | + | chr2.4:68815541-68815560 | None:intergenic | 50.0% | |
AGCCAATTCATCGAGCAGGA+AGG | - | chr2.4:68814629-68814648 | MS.gene004257:CDS | 50.0% | |
GCTAACATGGAGAAGTCCCA+AGG | + | chr2.4:68815611-68815630 | None:intergenic | 50.0% | |
TACTGGACAATATCGTCCCG+AGG | - | chr2.4:68815310-68815329 | MS.gene004257:intron | 50.0% | |
TGCCTTCCTGCTCGATGAAT+TGG | + | chr2.4:68814634-68814653 | None:intergenic | 50.0% | |
!! | TGGTGCTGATGTCCAAGGTT+TGG | - | chr2.4:68815541-68815560 | MS.gene004257:intron | 50.0% |
CAACCAGAGGTTTGGCCACA+AGG | - | chr2.4:68815104-68815123 | MS.gene004257:CDS | 55.0% | |
TAAGGGTGATGCATCAGGGC+TGG | - | chr2.4:68815484-68815503 | MS.gene004257:intron | 55.0% | |
! | GCATCAGGGCTGGTGAATGT+AGG | - | chr2.4:68815494-68815513 | MS.gene004257:intron | 55.0% |
GGACCTTGTGGCCAAACCTC+TGG | + | chr2.4:68815110-68815129 | None:intergenic | 60.0% | |
!! | GGCCATGGTGCTGATGTCCA+AGG | - | chr2.4:68815536-68815555 | MS.gene004257:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 68814597 | 68815676 | 68814597 | ID=MS.gene004257 |
chr2.4 | mRNA | 68814597 | 68815676 | 68814597 | ID=MS.gene004257.t1;Parent=MS.gene004257 |
chr2.4 | exon | 68815598 | 68815676 | 68815598 | ID=MS.gene004257.t1.exon1;Parent=MS.gene004257.t1 |
chr2.4 | CDS | 68815598 | 68815676 | 68815598 | ID=cds.MS.gene004257.t1;Parent=MS.gene004257.t1 |
chr2.4 | exon | 68814597 | 68815249 | 68814597 | ID=MS.gene004257.t1.exon2;Parent=MS.gene004257.t1 |
chr2.4 | CDS | 68814597 | 68815249 | 68814597 | ID=cds.MS.gene004257.t1;Parent=MS.gene004257.t1 |
Gene Sequence |
Protein sequence |