AlfalfaGEDB | MS.gene004267

M. sativa cultivar XinJiangDaYe / MS.gene004267

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004267.t1	XP_024632576.1	98.1	211	4	0	1	211	1	211	2.60E-111	411.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004267.t1	Q9SN43	87.6	201	25	0	11	211	6	206	4.8e-98	358.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004267.t1	A0A396J5M5	98.1	211	4	0	1	211	1	211	1.9e-111	411.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004267.t1	MTR_8g086380	88.601	193	22	0	19	211	14	206	1.75e-123	359
MS.gene004267.t1	MTR_2g016280	81.043	211	3	2	1	211	1	174	8.82e-111	325
MS.gene004267.t1	MTR_4g131060	72.340	188	52	0	24	211	11	198	2.53e-100	297
MS.gene004267.t1	MTR_4g029020	70.370	189	56	0	23	211	4	192	1.66e-97	291
MS.gene004267.t1	MTR_7g072575	71.123	187	54	0	25	211	6	192	3.78e-97	290
MS.gene004267.t1	MTR_5g075060	69.312	189	58	0	23	211	4	192	1.22e-95	286
MS.gene004267.t1	MTR_3g466400	68.085	188	60	0	24	211	7	194	5.83e-94	282
MS.gene004267.t1	MTR_3g466480	67.380	187	61	0	25	211	15	201	1.13e-93	281
MS.gene004267.t1	MTR_2g016340	67.914	187	60	0	25	211	6	192	2.70e-93	280
MS.gene004267.t1	MTR_1g013700	73.118	186	50	0	26	211	8	193	9.28e-92	275

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004267.t1	AT4G18700	87.562	201	25	0	11	211	6	206	1.33e-127	369
MS.gene004267.t1	AT5G45810	83.886	211	31	2	1	211	1	208	4.79e-124	359
MS.gene004267.t1	AT1G29230	77.500	200	45	0	12	211	55	254	7.58e-111	327
MS.gene004267.t1	AT2G34180	67.442	215	62	1	5	211	23	237	5.57e-102	304
MS.gene004267.t1	AT5G01810	72.917	192	51	1	20	211	2	192	3.60e-100	295
MS.gene004267.t1	AT5G01810	72.917	192	51	1	20	211	2	192	1.19e-99	295
MS.gene004267.t1	AT5G01810	72.917	192	51	1	20	211	2	192	1.19e-99	295
MS.gene004267.t1	AT5G45820	72.043	186	52	0	26	211	7	192	1.70e-98	293
MS.gene004267.t1	AT5G58380	70.588	187	55	0	25	211	6	192	5.25e-97	290
MS.gene004267.t1	AT5G25110	69.072	194	60	0	18	211	30	223	6.92e-97	290

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Find 31 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTTGCAAATGTTCCA+TGG	0.569771	2.4:-68661039	None:intergenic
AATTTGAAAGTGTCTGATTT+TGG	0.301997	2.4:+68661421	MS.gene004267:CDS
AATTTGTTGCTTGATGAGAA+TGG	0.564736	2.4:+68661397	MS.gene004267:CDS
ACCTCAGGTGCAACATAAGC+AGG	0.503295	2.4:-68661505	None:intergenic
ACCTGCTTATGTTGCACCTG+AGG	0.502323	2.4:+68661504	MS.gene004267:CDS
ATGCTAGAGGTGTTTATCAT+AGG	0.346416	2.4:+68661359	MS.gene004267:CDS
CAAACAATTGAACGATATTC+GGG	0.444036	2.4:-68661189	None:intergenic
CAACAATTGATTTCTGCTGT+TGG	0.423701	2.4:+68661328	MS.gene004267:CDS
CAGCAAAGACAAAGACAAGA+AGG	0.540398	2.4:+68660967	MS.gene004267:CDS
CCTTTCCTAGCCAAAACCTC+AGG	0.580605	2.4:-68661520	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACATCAAAACCGATGA+AGG	+	chr2.4:68661070-68661089	MS.gene004267:CDS	30.0%
CAAACAATTGAACGATATTC+GGG	-	chr2.4:68661192-68661211	None:intergenic	30.0%
GAATATCGTTCAATTGTTTG+AGG	+	chr2.4:68661192-68661211	MS.gene004267:CDS	30.0%
TCTGATCAAATTAGACAAGA+TGG	+	chr2.4:68661457-68661476	MS.gene004267:CDS	30.0%
TTGTTATGGAATATGTTCGT+GGG	+	chr2.4:68661242-68661261	MS.gene004267:CDS	30.0%
AAACCTTTGCAAATGTTCCA+TGG	-	chr2.4:68661042-68661061	None:intergenic	35.0%
TGTTATGGAATATGTTCGTG+GGG	+	chr2.4:68661243-68661262	MS.gene004267:CDS	35.0%
TTCGAAGTTGGAAAACTTCT+TGG	+	chr2.4:68661016-68661035	MS.gene004267:CDS	35.0%
TTTGATTGCAACACCTTCAT+CGG	-	chr2.4:68661086-68661105	None:intergenic	35.0%
CAGCAAAGACAAAGACAAGA+AGG	+	chr2.4:68660967-68660986	MS.gene004267:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	68660926	68661558	68660926	ID=MS.gene004267
chr2.4	mRNA	68660926	68661558	68660926	ID=MS.gene004267.t1;Parent=MS.gene004267
chr2.4	exon	68660926	68661558	68660926	ID=MS.gene004267.t1.exon1;Parent=MS.gene004267.t1
chr2.4	CDS	68660926	68661558	68660926	ID=cds.MS.gene004267.t1;Parent=MS.gene004267.t1

Gene Sequence

>MS.gene004267

ATGGCTGACGTGCTTTTACACAAGGTGAAAACATCATCAAACAGCAAAGACAAAGACAAGAAGGAAACATCGACTCTCTTATTGGGTCGTTTCGAAGTTGGAAAACTTCTTGGCCATGGAACATTTGCAAAGGTTTACTATGCAAAAAACATCAAAACCGATGAAGGTGTTGCAATCAAAGTGATTGACAAAGAGAAGATTTTAAAGGGTGGTTTGGTTGCTCATATCAAACGTGAGATCTCAATTCTTCGCCGTGTTCGACACCCGAATATCGTTCAATTGTTTGAGGTAATGGCTACAAAAACAAAGATCTATTTTGTTATGGAATATGTTCGTGGGGGTGAGCTTTTTAACAAGGTTGCTAAGGGTAGGTTGAAAGAAGAAGTTGCTAGAAAGTATTTTCAACAATTGATTTCTGCTGTTGGATTTTGTCATGCTAGAGGTGTTTATCATAGGGATCTTAAGCCTGAAAATTTGTTGCTTGATGAGAATGGTAATTTGAAAGTGTCTGATTTTGGTTTGAGTGCTGTTTCTGATCAAATTAGACAAGATGGTTTGTTTCATACTTTTTGTGGTACACCTGCTTATGTTGCACCTGAGGTTTTGGCTAGGAAAGGTTATGATGGTGCAAAG

Protein sequence

>MS.gene004267.t1

MADVLLHKVKTSSNSKDKDKKETSTLLLGRFEVGKLLGHGTFAKVYYAKNIKTDEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAK