Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004305.t1 | XP_003593824.2 | 60.6 | 310 | 55 | 6 | 23 | 268 | 40 | 346 | 2.20E-73 | 285.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004305.t1 | G7ILU8 | 60.6 | 310 | 55 | 6 | 23 | 268 | 41 | 347 | 1.6e-73 | 285.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene004305.t1 | TF | OFP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004305.t1 | MTR_2g018030 | 86.256 | 211 | 24 | 4 | 23 | 230 | 41 | 249 | 8.50e-117 | 339 |
| MS.gene004305.t1 | MTR_8g087530 | 68.519 | 54 | 15 | 1 | 209 | 262 | 271 | 322 | 5.18e-19 | 85.9 |
| MS.gene004305.t1 | MTR_4g028930 | 58.333 | 60 | 21 | 2 | 209 | 268 | 327 | 382 | 1.62e-16 | 79.0 |
| MS.gene004305.t1 | MTR_7g072875 | 60.784 | 51 | 18 | 1 | 210 | 260 | 233 | 281 | 1.03e-15 | 75.9 |
| MS.gene004305.t1 | MTR_7g072630 | 60.784 | 51 | 18 | 1 | 210 | 260 | 295 | 343 | 1.68e-15 | 75.9 |
| MS.gene004305.t1 | MTR_5g075210 | 57.447 | 47 | 20 | 0 | 210 | 256 | 294 | 340 | 5.11e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004305.t1 | AT2G30400 | 65.385 | 52 | 16 | 1 | 209 | 260 | 265 | 314 | 3.20e-16 | 77.8 |
| MS.gene004305.t1 | AT1G06920 | 62.264 | 53 | 18 | 1 | 208 | 260 | 255 | 305 | 4.73e-16 | 77.0 |
| MS.gene004305.t1 | AT4G18830 | 66.667 | 48 | 16 | 0 | 209 | 256 | 295 | 342 | 3.02e-15 | 75.1 |
| MS.gene004305.t1 | AT5G01840 | 55.357 | 56 | 23 | 1 | 209 | 264 | 211 | 264 | 1.29e-14 | 72.4 |
| MS.gene004305.t1 | AT5G58360 | 51.923 | 52 | 23 | 1 | 209 | 260 | 237 | 286 | 9.80e-13 | 67.4 |
Find 35 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAAAGAGGAGGATATTAT+TGG | 0.252651 | 2.4:-68172641 | MS.gene004305:CDS |
| GAGGAAAGCACAACAGGTTT+TGG | 0.290055 | 2.4:-68172510 | MS.gene004305:CDS |
| TTCACCCTTGAAACTTTCTT+TGG | 0.300747 | 2.4:+68172212 | None:intergenic |
| TTTGATATTGGTGGAAAATA+TGG | 0.307283 | 2.4:-68172698 | MS.gene004305:CDS |
| AAAAGGAATATGAAAATATA+AGG | 0.317179 | 2.4:-68172544 | MS.gene004305:CDS |
| AAATTATTTACTAGTTAATC+AGG | 0.327036 | 2.4:-68171122 | MS.gene004305:CDS |
| ATTTACTAGTTAATCAGGTT+TGG | 0.342592 | 2.4:-68171117 | MS.gene004305:CDS |
| TTTACTAGTTAATCAGGTTT+GGG | 0.351318 | 2.4:-68171116 | MS.gene004305:CDS |
| GCAAAAGAATGTGTTGTTCT+TGG | 0.370662 | 2.4:+68172401 | None:intergenic |
| GATTAGTAAGGCAGAAGAAA+TGG | 0.373351 | 2.4:-68171955 | MS.gene004305:CDS |
| CTTGGTGTACAAATTGTTCT+TGG | 0.377176 | 2.4:+68172419 | None:intergenic |
| ATCTCATAATCAAAGTATTT+AGG | 0.389618 | 2.4:-68171884 | MS.gene004305:CDS |
| AAGATTGATGAGTATGAATA+TGG | 0.400813 | 2.4:-68172572 | MS.gene004305:CDS |
| ATTTGAGAGGAAAGCACAAC+AGG | 0.409645 | 2.4:-68172516 | MS.gene004305:CDS |
| CTGCGATTCACTAAGGTACA+TGG | 0.426392 | 2.4:+68174880 | None:intergenic |
| ACGATAGGCGGCGGCGTTTG+CGG | 0.428514 | 2.4:+68174835 | None:intergenic |
| GGAAAATATGGTAACAAAAG+TGG | 0.450154 | 2.4:-68172686 | MS.gene004305:CDS |
| AGAAGAAATGGAAGAGTTGT+TGG | 0.458484 | 2.4:-68171943 | MS.gene004305:CDS |
| TGAAGAGAAACAGATTAGTA+AGG | 0.497006 | 2.4:-68171967 | MS.gene004305:CDS |
| GGAAACCAAAGAAAGTTTCA+AGG | 0.508120 | 2.4:-68172217 | MS.gene004305:CDS |
| AGGTATAGTGAAGTTAAAAG+AGG | 0.511966 | 2.4:-68172654 | MS.gene004305:CDS |
| GTATGAATATGGTAGAGAAA+AGG | 0.531014 | 2.4:-68172561 | MS.gene004305:CDS |
| CATAATCAAAGTATTTAGGC+AGG | 0.542446 | 2.4:-68171880 | MS.gene004305:intron |
| CCACCAATATCAAAACATGA+AGG | 0.542576 | 2.4:+68172707 | None:intergenic |
| TCTCTTTCTAGATTGAAAAG+TGG | 0.543229 | 2.4:-68171177 | MS.gene004305:intron |
| TATAGTGAAGTTAAAAGAGG+AGG | 0.552468 | 2.4:-68172651 | MS.gene004305:CDS |
| GTTAATCAGGTTTGGGACTG+AGG | 0.557708 | 2.4:-68171109 | None:intergenic |
| AAAACGGTGAATGATAAGAA+GGG | 0.585607 | 2.4:-68172602 | MS.gene004305:CDS |
| GAAACCAAAGAAAGTTTCAA+GGG | 0.604643 | 2.4:-68172216 | MS.gene004305:intron |
| CCAATATCAAAACATGAAGG+TGG | 0.616765 | 2.4:+68172710 | None:intergenic |
| TTGCGGCGATTGACTGACGA+AGG | 0.616886 | 2.4:+68174852 | None:intergenic |
| ATATAAGGAGAAGATTTGAG+AGG | 0.626627 | 2.4:-68172529 | MS.gene004305:CDS |
| AACAAAAGTGGAAGAAAACA+AGG | 0.640173 | 2.4:-68172674 | MS.gene004305:CDS |
| TCGAGACTTACGATAGGCGG+CGG | 0.664477 | 2.4:+68174826 | None:intergenic |
| TATTCGAGACTTACGATAGG+CGG | 0.716091 | 2.4:+68174823 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAATAAAGTAATAAGT+TGG | - | chr2.4:68172744-68172763 | MS.gene004305:CDS | 10.0% |
| !! | AGTATATCATATATAAATTA+AGG | + | chr2.4:68174653-68174672 | None:intergenic | 10.0% |
| !! | GTATATCATATATAAATTAA+GGG | + | chr2.4:68174652-68174671 | None:intergenic | 10.0% |
| !!! | ATGCTTATATATTTAATTTA+TGG | - | chr2.4:68174429-68174448 | MS.gene004305:intron | 10.0% |
| !! | AAAAGGAATATGAAAATATA+AGG | - | chr2.4:68173445-68173464 | MS.gene004305:intron | 15.0% |
| !! | AAATAAACTATTTACATTTC+TGG | + | chr2.4:68174239-68174258 | None:intergenic | 15.0% |
| !! | AAATTATTTACTAGTTAATC+AGG | - | chr2.4:68174867-68174886 | MS.gene004305:CDS | 15.0% |
| !!! | TTTCTTTATTGTTGTTTTTT+TGG | + | chr2.4:68172182-68172201 | None:intergenic | 15.0% |
| !! | AAAAAAATTGTTCTTGTAGA+GGG | + | chr2.4:68171698-68171717 | None:intergenic | 20.0% |
| !! | AATTATAAGTGACTTTAAAC+GGG | - | chr2.4:68172452-68172471 | MS.gene004305:CDS | 20.0% |
| !! | ACAACAATAAAGAAAAATGT+TGG | - | chr2.4:68172187-68172206 | MS.gene004305:intron | 20.0% |
| !! | ATAAAGAAATTAGCGATTTA+AGG | - | chr2.4:68171217-68171236 | MS.gene004305:intron | 20.0% |
| !! | CAATTATAAGTGACTTTAAA+CGG | - | chr2.4:68172451-68172470 | MS.gene004305:CDS | 20.0% |
| !! | TAAAAAAATTGTTCTTGTAG+AGG | + | chr2.4:68171699-68171718 | None:intergenic | 20.0% |
| !! | TAAAATAAACAAGTTAACCA+GGG | - | chr2.4:68171811-68171830 | MS.gene004305:intron | 20.0% |
| !! | TATCAAAGACAAAAAACAAT+AGG | - | chr2.4:68172930-68172949 | MS.gene004305:intron | 20.0% |
| !! | TTAAAATAAACAAGTTAACC+AGG | - | chr2.4:68171810-68171829 | MS.gene004305:intron | 20.0% |
| !!! | AAGAAACAATTTCTACTTTT+AGG | - | chr2.4:68174588-68174607 | MS.gene004305:intron | 20.0% |
| !!! | AAGCAAGAAAAAGTATTAAT+TGG | - | chr2.4:68172862-68172881 | MS.gene004305:intron | 20.0% |
| !!! | ATCTCATAATCAAAGTATTT+AGG | - | chr2.4:68174105-68174124 | MS.gene004305:intron | 20.0% |
| !!! | ATTATTGTGTCAATTTTCTT+TGG | + | chr2.4:68172340-68172359 | None:intergenic | 20.0% |
| !!! | ATTTTGATATTTTGTCAAAG+AGG | - | chr2.4:68171399-68171418 | MS.gene004305:intron | 20.0% |
| !!! | CCTTAGCATAATTTTTATTA+CGG | - | chr2.4:68171628-68171647 | MS.gene004305:intron | 20.0% |
| !!! | CTTAGCATAATTTTTATTAC+GGG | - | chr2.4:68171629-68171648 | MS.gene004305:intron | 20.0% |
| !!! | TAATTGGTAATTATCATTCA+TGG | + | chr2.4:68174193-68174212 | None:intergenic | 20.0% |
| !!! | TATTAGTTTGATAGATTAGA+TGG | + | chr2.4:68172557-68172576 | None:intergenic | 20.0% |
| !!! | TGTTTTGTAAATGTTAGATT+TGG | + | chr2.4:68173060-68173079 | None:intergenic | 20.0% |
| !!! | TTAGATGGATTTTTGTTTTT+TGG | + | chr2.4:68172542-68172561 | None:intergenic | 20.0% |
| !!! | TTATTGTGTCAATTTTCTTT+GGG | + | chr2.4:68172339-68172358 | None:intergenic | 20.0% |
| !!! | TTTTCCTTTGGATTTTATAA+TGG | + | chr2.4:68172265-68172284 | None:intergenic | 20.0% |
| !!! | TTTTTTACCTTTGCAAAATT+AGG | - | chr2.4:68171712-68171731 | MS.gene004305:intron | 20.0% |
| ! | AAAAGATGAAGAAAGAAAGA+AGG | - | chr2.4:68173880-68173899 | MS.gene004305:intron | 25.0% |
| ! | AAAATAAACAAGTTAACCAG+GGG | - | chr2.4:68171812-68171831 | MS.gene004305:intron | 25.0% |
| ! | AAAGATGAAGAAAGAAAGAA+GGG | - | chr2.4:68173881-68173900 | MS.gene004305:intron | 25.0% |
| ! | AACAAAATAATGATGAAGTG+GGG | - | chr2.4:68173105-68173124 | MS.gene004305:intron | 25.0% |
| ! | AAGATTGATGAGTATGAATA+TGG | - | chr2.4:68173417-68173436 | MS.gene004305:intron | 25.0% |
| ! | AATTAGAGTAGTTAACTAAC+TGG | - | chr2.4:68174208-68174227 | MS.gene004305:intron | 25.0% |
| ! | ACAACAAAATAATGATGAAG+TGG | - | chr2.4:68173103-68173122 | MS.gene004305:intron | 25.0% |
| ! | AGTTAGTTAACTACTCTAAT+TGG | + | chr2.4:68174209-68174228 | None:intergenic | 25.0% |
| ! | ATTGTAATTTCGCAAGTATT+TGG | - | chr2.4:68174259-68174278 | MS.gene004305:intron | 25.0% |
| ! | ATTTACTAGTTAATCAGGTT+TGG | - | chr2.4:68174872-68174891 | MS.gene004305:CDS | 25.0% |
| ! | CAAACTTCCTAAAATATTTC+CGG | + | chr2.4:68172116-68172135 | None:intergenic | 25.0% |
| ! | CAACAAAATAATGATGAAGT+GGG | - | chr2.4:68173104-68173123 | MS.gene004305:intron | 25.0% |
| ! | CACTAAAATAGCTAAATAAG+TGG | + | chr2.4:68174334-68174353 | None:intergenic | 25.0% |
| ! | CCGTAATAAAAATTATGCTA+AGG | + | chr2.4:68171631-68171650 | None:intergenic | 25.0% |
| ! | CTTAGAAGATCAAAGAAAAA+CGG | - | chr2.4:68173371-68173390 | MS.gene004305:intron | 25.0% |
| ! | GAAAATATATTCACCAAGAT+TGG | - | chr2.4:68173797-68173816 | MS.gene004305:intron | 25.0% |
| ! | GAAACCATTATAAAATCCAA+AGG | - | chr2.4:68172258-68172277 | MS.gene004305:CDS | 25.0% |
| ! | GACAGTTAGAAATGTTAAAT+AGG | + | chr2.4:68172967-68172986 | None:intergenic | 25.0% |
| ! | TAAAGACTCAAGAAAAACAA+AGG | - | chr2.4:68173748-68173767 | MS.gene004305:intron | 25.0% |
| ! | TACTAGATTGTGTAAAGAAA+GGG | + | chr2.4:68173016-68173035 | None:intergenic | 25.0% |
| ! | TGAGAGTGATGAATAATTTA+GGG | - | chr2.4:68171289-68171308 | MS.gene004305:intron | 25.0% |
| ! | TTAAAAGAGGAGGATATTAT+TGG | - | chr2.4:68173348-68173367 | MS.gene004305:intron | 25.0% |
| ! | TTACTAGATTGTGTAAAGAA+AGG | + | chr2.4:68173017-68173036 | None:intergenic | 25.0% |
| ! | TTTACTAGTTAATCAGGTTT+GGG | - | chr2.4:68174873-68174892 | MS.gene004305:CDS | 25.0% |
| ! | TTTCAATCTAGAAAGAGATA+GGG | + | chr2.4:68174810-68174829 | None:intergenic | 25.0% |
| ! | TTTGATATTGGTGGAAAATA+TGG | - | chr2.4:68173291-68173310 | MS.gene004305:intron | 25.0% |
| !! | ACGTTTTACGTATTTTGTTA+TGG | + | chr2.4:68171666-68171685 | None:intergenic | 25.0% |
| !! | CGTTTAAAGTCACTTATAAT+TGG | + | chr2.4:68172453-68172472 | None:intergenic | 25.0% |
| !! | TATTAACTTTGGTGATAAAG+AGG | + | chr2.4:68172316-68172335 | None:intergenic | 25.0% |
| !! | TCTCAGATAAACAAGATTTT+GGG | - | chr2.4:68171322-68171341 | MS.gene004305:intron | 25.0% |
| !! | TGGATTTTATAATGGTTTCT+AGG | + | chr2.4:68172257-68172276 | None:intergenic | 25.0% |
| !! | TTCTCAGATAAACAAGATTT+TGG | - | chr2.4:68171321-68171340 | MS.gene004305:intron | 25.0% |
| !! | TTTTCAATCTAGAAAGAGAT+AGG | + | chr2.4:68174811-68174830 | None:intergenic | 25.0% |
| !! | TTTTCTTTGGGTATTAACTT+TGG | + | chr2.4:68172327-68172346 | None:intergenic | 25.0% |
| !!! | AATGAATGATCCCTTTTTTT+AGG | + | chr2.4:68172802-68172821 | None:intergenic | 25.0% |
| !!! | TAAAAGCATTAGAAGAAATG+AGG | - | chr2.4:68173844-68173863 | MS.gene004305:intron | 25.0% |
| !!! | TTACGTATTTTGTTATGGTA+GGG | + | chr2.4:68171661-68171680 | None:intergenic | 25.0% |
| !!! | TTGTACTTCGATTGTTTTTT+CGG | - | chr2.4:68171776-68171795 | MS.gene004305:intron | 25.0% |
| !!! | TTTACGTATTTTGTTATGGT+AGG | + | chr2.4:68171662-68171681 | None:intergenic | 25.0% |
| AAAAACGGTGAATGATAAGA+AGG | - | chr2.4:68173386-68173405 | MS.gene004305:intron | 30.0% | |
| AAAACGGTGAATGATAAGAA+GGG | - | chr2.4:68173387-68173406 | MS.gene004305:intron | 30.0% | |
| AACAAAAGTGGAAGAAAACA+AGG | - | chr2.4:68173315-68173334 | MS.gene004305:intron | 30.0% | |
| AACTTAGAAAGCCAAGAAAA+AGG | + | chr2.4:68173189-68173208 | None:intergenic | 30.0% | |
| ACAGCAAAACTATCTAATTC+TGG | + | chr2.4:68173945-68173964 | None:intergenic | 30.0% | |
| ACAGTGGACAAAGAATTTAT+AGG | + | chr2.4:68172290-68172309 | None:intergenic | 30.0% | |
| ACTAGATTGTGTAAAGAAAG+GGG | + | chr2.4:68173015-68173034 | None:intergenic | 30.0% | |
| AGAAATGTTAAATAGGAACG+TGG | + | chr2.4:68172960-68172979 | None:intergenic | 30.0% | |
| AGACTCACGAAATTCTTTAT+CGG | + | chr2.4:68171253-68171272 | None:intergenic | 30.0% | |
| AGGTATAGTGAAGTTAAAAG+AGG | - | chr2.4:68173335-68173354 | MS.gene004305:intron | 30.0% | |
| AGTGGACAAAGAATTTATAG+GGG | + | chr2.4:68172288-68172307 | None:intergenic | 30.0% | |
| ATAAACACGGAAACTAAAAG+AGG | - | chr2.4:68171858-68171877 | MS.gene004305:intron | 30.0% | |
| ATATAAGGAGAAGATTTGAG+AGG | - | chr2.4:68173460-68173479 | MS.gene004305:intron | 30.0% | |
| ATGAATAATAAGATGAAGGG+GGG | - | chr2.4:68171966-68171985 | MS.gene004305:CDS | 30.0% | |
| ATTAAATTGCACAATTGCAC+TGG | - | chr2.4:68172636-68172655 | MS.gene004305:CDS | 30.0% | |
| CAGTGGACAAAGAATTTATA+GGG | + | chr2.4:68172289-68172308 | None:intergenic | 30.0% | |
| CATGAATAATAAGATGAAGG+GGG | - | chr2.4:68171965-68171984 | MS.gene004305:CDS | 30.0% | |
| CCATGAATAATAAGATGAAG+GGG | - | chr2.4:68171964-68171983 | MS.gene004305:CDS | 30.0% | |
| CCTATAATCATCCATAAACA+CGG | - | chr2.4:68171845-68171864 | MS.gene004305:intron | 30.0% | |
| CGTGTTTATGGATGATTATA+GGG | + | chr2.4:68171847-68171866 | None:intergenic | 30.0% | |
| CTCATCGACATCTATAAAAA+AGG | - | chr2.4:68174838-68174857 | MS.gene004305:CDS | 30.0% | |
| CTGAGAGTGATGAATAATTT+AGG | - | chr2.4:68171288-68171307 | MS.gene004305:intron | 30.0% | |
| CTTCATCTTATTATTCATGG+CGG | + | chr2.4:68171964-68171983 | None:intergenic | 30.0% | |
| GAAAAAACATGAAGAGTTGA+CGG | - | chr2.4:68173725-68173744 | MS.gene004305:intron | 30.0% | |
| GAAACCAAAGAAAGTTTCAA+GGG | - | chr2.4:68173773-68173792 | MS.gene004305:intron | 30.0% | |
| GAAATGTTAAATAGGAACGT+GGG | + | chr2.4:68172959-68172978 | None:intergenic | 30.0% | |
| GATATGAGTCAATATGGTTT+AGG | - | chr2.4:68174140-68174159 | MS.gene004305:intron | 30.0% | |
| GCCATGAATAATAAGATGAA+GGG | - | chr2.4:68171963-68171982 | MS.gene004305:CDS | 30.0% | |
| GGAAAATATGGTAACAAAAG+TGG | - | chr2.4:68173303-68173322 | MS.gene004305:intron | 30.0% | |
| GTAAATGTTAGATTTGGCTA+AGG | + | chr2.4:68173054-68173073 | None:intergenic | 30.0% | |
| GTATGAATATGGTAGAGAAA+AGG | - | chr2.4:68173428-68173447 | MS.gene004305:intron | 30.0% | |
| GTCGTATATACCAAATAGAA+CGG | + | chr2.4:68171594-68171613 | None:intergenic | 30.0% | |
| GTGTTTATGGATGATTATAG+GGG | + | chr2.4:68171846-68171865 | None:intergenic | 30.0% | |
| TATAGTGAAGTTAAAAGAGG+AGG | - | chr2.4:68173338-68173357 | MS.gene004305:intron | 30.0% | |
| TATTGCTAGTAGTTAACTAG+AGG | + | chr2.4:68174397-68174416 | None:intergenic | 30.0% | |
| TCTCTTTCTAGATTGAAAAG+TGG | - | chr2.4:68174812-68174831 | MS.gene004305:intron | 30.0% | |
| TGAAGAGAAACAGATTAGTA+AGG | - | chr2.4:68174022-68174041 | MS.gene004305:intron | 30.0% | |
| TGGTTTGATATGAGTCAATA+TGG | - | chr2.4:68174134-68174153 | MS.gene004305:intron | 30.0% | |
| TTAATTGGTCACAAGATTTG+TGG | - | chr2.4:68172877-68172896 | MS.gene004305:intron | 30.0% | |
| TTCAATCTAGAAAGAGATAG+GGG | + | chr2.4:68174809-68174828 | None:intergenic | 30.0% | |
| TTCATCTAATCTAACCTACT+TGG | - | chr2.4:68172359-68172378 | MS.gene004305:CDS | 30.0% | |
| ! | AATTTATAGGGGTTTTCCTT+TGG | + | chr2.4:68172277-68172296 | None:intergenic | 30.0% |
| ! | CATAATCAAAGTATTTAGGC+AGG | - | chr2.4:68174109-68174128 | MS.gene004305:intron | 30.0% |
| ! | CTCAGATAAACAAGATTTTG+GGG | - | chr2.4:68171323-68171342 | MS.gene004305:intron | 30.0% |
| ! | TAAGTCACCGGAAATATTTT+AGG | - | chr2.4:68172106-68172125 | MS.gene004305:intron | 30.0% |
| ! | TCAGATAAACAAGATTTTGG+GGG | - | chr2.4:68171324-68171343 | MS.gene004305:intron | 30.0% |
| !! | CGGAAATATTTTAGGAAGTT+TGG | - | chr2.4:68172114-68172133 | MS.gene004305:intron | 30.0% |
| !!! | CGGTAGTTTGTCAAATTTTT+TGG | + | chr2.4:68171574-68171593 | None:intergenic | 30.0% |
| !!! | GTTTTTTAAAACTCGACATC+CGG | + | chr2.4:68172520-68172539 | None:intergenic | 30.0% |
| !!! | TCTTTTAGTTTCCGTGTTTA+TGG | + | chr2.4:68171859-68171878 | None:intergenic | 30.0% |
| AAAGAATTTCGTGAGTCTCT+TGG | - | chr2.4:68171255-68171274 | MS.gene004305:intron | 35.0% | |
| AAGAATTTCGTGAGTCTCTT+GGG | - | chr2.4:68171256-68171275 | MS.gene004305:intron | 35.0% | |
| AAGAGTTCATAAAACAGTGG+AGG | - | chr2.4:68172024-68172043 | MS.gene004305:intron | 35.0% | |
| AAGGAACCGTTCATTTGTAA+AGG | + | chr2.4:68172479-68172498 | None:intergenic | 35.0% | |
| ACTACGTGGACCTAAAAAAA+GGG | - | chr2.4:68172789-68172808 | MS.gene004305:intron | 35.0% | |
| AGAAGAAATGGAAGAGTTGT+TGG | - | chr2.4:68174046-68174065 | MS.gene004305:intron | 35.0% | |
| AGACTCAAGAAAAACAAAGG+AGG | - | chr2.4:68173751-68173770 | MS.gene004305:intron | 35.0% | |
| AGAGTTCATAAAACAGTGGA+GGG | - | chr2.4:68172025-68172044 | MS.gene004305:intron | 35.0% | |
| AGGAACCGTTCATTTGTAAA+GGG | + | chr2.4:68172478-68172497 | None:intergenic | 35.0% | |
| ATGTTCATCAAATCCAAAGC+AGG | - | chr2.4:68173971-68173990 | MS.gene004305:intron | 35.0% | |
| CCAATATCAAAACATGAAGG+TGG | + | chr2.4:68173282-68173301 | None:intergenic | 35.0% | |
| CCACCAATATCAAAACATGA+AGG | + | chr2.4:68173285-68173304 | None:intergenic | 35.0% | |
| CCCCTTCATCTTATTATTCA+TGG | + | chr2.4:68171967-68171986 | None:intergenic | 35.0% | |
| CCGTGTTTATGGATGATTAT+AGG | + | chr2.4:68171848-68171867 | None:intergenic | 35.0% | |
| CGCCATGAATAATAAGATGA+AGG | - | chr2.4:68171962-68171981 | MS.gene004305:CDS | 35.0% | |
| CTCAAAATGTTGTGGTGATT+TGG | - | chr2.4:68171747-68171766 | MS.gene004305:intron | 35.0% | |
| CTTGGATTAAGTGCAAGTAT+TGG | - | chr2.4:68172377-68172396 | MS.gene004305:CDS | 35.0% | |
| GATTAGTAAGGCAGAAGAAA+TGG | - | chr2.4:68174034-68174053 | MS.gene004305:intron | 35.0% | |
| GCTCAATGACGACAAATTTA+AGG | + | chr2.4:68172498-68172517 | None:intergenic | 35.0% | |
| GGAAACCAAAGAAAGTTTCA+AGG | - | chr2.4:68173772-68173791 | MS.gene004305:intron | 35.0% | |
| GTTAGATCAGAAATGCAATG+CGG | - | chr2.4:68174164-68174183 | MS.gene004305:intron | 35.0% | |
| GTTGATATGCTATCTGCTTA+GGG | + | chr2.4:68171928-68171947 | None:intergenic | 35.0% | |
| GTTGTAGACTCAAAATGTTG+TGG | - | chr2.4:68171739-68171758 | MS.gene004305:intron | 35.0% | |
| GTTTCTACTCAGAGAAAGTT+CGG | + | chr2.4:68172836-68172855 | None:intergenic | 35.0% | |
| TAAATTTGTCGTCATTGAGC+CGG | - | chr2.4:68172498-68172517 | MS.gene004305:CDS | 35.0% | |
| TAAGTCAATAGCTATGGCAA+CGG | - | chr2.4:68174729-68174748 | MS.gene004305:intron | 35.0% | |
| TACTACGTGGACCTAAAAAA+AGG | - | chr2.4:68172788-68172807 | MS.gene004305:intron | 35.0% | |
| TACTTGCACTTAATCCAAGT+AGG | + | chr2.4:68172376-68172395 | None:intergenic | 35.0% | |
| TAGTCAATATTCCACGCTAT+CGG | - | chr2.4:68174703-68174722 | MS.gene004305:intron | 35.0% | |
| TCACGAAATTCTTTATCGGT+TGG | + | chr2.4:68171249-68171268 | None:intergenic | 35.0% | |
| TCGAATATCGACACAAAAGT+GGG | - | chr2.4:68171182-68171201 | MS.gene004305:intron | 35.0% | |
| TCTTCTTCTTCTACTTCTTC+TGG | - | chr2.4:68173162-68173181 | MS.gene004305:intron | 35.0% | |
| TGACAAACTACCGTTCTATT+TGG | - | chr2.4:68171581-68171600 | MS.gene004305:intron | 35.0% | |
| TGTTGATATGCTATCTGCTT+AGG | + | chr2.4:68171929-68171948 | None:intergenic | 35.0% | |
| TGTTGGAATATAGACGTTTC+TGG | - | chr2.4:68172204-68172223 | MS.gene004305:intron | 35.0% | |
| TTCACCCTTGAAACTTTCTT+TGG | + | chr2.4:68173780-68173799 | None:intergenic | 35.0% | |
| TTCATGTTATGAGAGAAGAG+TGG | - | chr2.4:68171993-68172012 | MS.gene004305:CDS | 35.0% | |
| TTGATATGCTATCTGCTTAG+GGG | + | chr2.4:68171927-68171946 | None:intergenic | 35.0% | |
| ! | AACAACGCCTAATTTTGCAA+AGG | + | chr2.4:68171722-68171741 | None:intergenic | 35.0% |
| ! | CTTGGTGTACAAATTGTTCT+TGG | + | chr2.4:68173573-68173592 | None:intergenic | 35.0% |
| ! | GCAAAAGAATGTGTTGTTCT+TGG | + | chr2.4:68173591-68173610 | None:intergenic | 35.0% |
| ! | TAGCGTGGAATATTGACTAT+AGG | + | chr2.4:68174702-68174721 | None:intergenic | 35.0% |
| ! | TCAAAGTATTTAGGCAGGTA+TGG | - | chr2.4:68174114-68174133 | MS.gene004305:intron | 35.0% |
| !! | ACTTCTTAACTTGTGTCTTG+AGG | + | chr2.4:68174489-68174508 | None:intergenic | 35.0% |
| !! | CATGTTAACTTGTGTCCTTA+GGG | + | chr2.4:68174628-68174647 | None:intergenic | 35.0% |
| !! | GAATCTCTAAAATCCTGCTT+TGG | + | chr2.4:68173987-68174006 | None:intergenic | 35.0% |
| !! | TAAACAAGATTTTGGGGGTT+TGG | - | chr2.4:68171329-68171348 | MS.gene004305:intron | 35.0% |
| !! | TCAACCTTTGAAACCAATCT+TGG | + | chr2.4:68173813-68173832 | None:intergenic | 35.0% |
| !! | TCATGTTAACTTGTGTCCTT+AGG | + | chr2.4:68174629-68174648 | None:intergenic | 35.0% |
| !! | TTCACCAAGATTGGTTTCAA+AGG | - | chr2.4:68173806-68173825 | MS.gene004305:intron | 35.0% |
| !!! | CCACCTTCATGTTTTGATAT+TGG | - | chr2.4:68173279-68173298 | MS.gene004305:intron | 35.0% |
| !!! | CCTTCATGTTTTGATATTGG+TGG | - | chr2.4:68173282-68173301 | MS.gene004305:intron | 35.0% |
| AAGGGAGGAAGAAATTCATG+TGG | - | chr2.4:68173899-68173918 | MS.gene004305:intron | 40.0% | |
| AAGTCAATAGCTATGGCAAC+GGG | - | chr2.4:68174730-68174749 | MS.gene004305:intron | 40.0% | |
| AATATCGACACAAAAGTGGG+AGG | - | chr2.4:68171185-68171204 | MS.gene004305:intron | 40.0% | |
| ATCTAGAAAGAGATAGGGGT+AGG | + | chr2.4:68174805-68174824 | None:intergenic | 40.0% | |
| ATTGGTCACAAGATTTGTGG+CGG | - | chr2.4:68172880-68172899 | MS.gene004305:intron | 40.0% | |
| CACTGGTATAGTTCATCACT+TGG | - | chr2.4:68172653-68172672 | MS.gene004305:CDS | 40.0% | |
| CGATATTCGAGACTTACGAT+AGG | + | chr2.4:68171172-68171191 | None:intergenic | 40.0% | |
| CGGCTATAAGTCAATAGCTA+TGG | - | chr2.4:68174723-68174742 | MS.gene004305:intron | 40.0% | |
| CTCGAATATCGACACAAAAG+TGG | - | chr2.4:68171181-68171200 | MS.gene004305:intron | 40.0% | |
| GAGTTCATAAAACAGTGGAG+GGG | - | chr2.4:68172026-68172045 | MS.gene004305:intron | 40.0% | |
| GATGAAGAAAGAAAGAAGGG+AGG | - | chr2.4:68173884-68173903 | MS.gene004305:intron | 40.0% | |
| GATGATGCTGATGAAGAAGA+AGG | + | chr2.4:68173141-68173160 | None:intergenic | 40.0% | |
| GGGAAGAGTTCATAAAACAG+TGG | - | chr2.4:68172021-68172040 | MS.gene004305:intron | 40.0% | |
| TATGAGAGAAGAGTGGAGAT+GGG | - | chr2.4:68172000-68172019 | MS.gene004305:intron | 40.0% | |
| TATTCGAGACTTACGATAGG+CGG | + | chr2.4:68171169-68171188 | None:intergenic | 40.0% | |
| TCTAGAAAGAGATAGGGGTA+GGG | + | chr2.4:68174804-68174823 | None:intergenic | 40.0% | |
| TTATGAGAGAAGAGTGGAGA+TGG | - | chr2.4:68171999-68172018 | MS.gene004305:CDS | 40.0% | |
| ! | ATTTGAGAGGAAAGCACAAC+AGG | - | chr2.4:68173473-68173492 | MS.gene004305:intron | 40.0% |
| ! | CTTCTTCTGGTCCTTTTTCT+TGG | - | chr2.4:68173175-68173194 | MS.gene004305:intron | 40.0% |
| ! | GGTTTTTCTGCGATTCACTA+AGG | + | chr2.4:68171119-68171138 | None:intergenic | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+AGG | - | chr2.4:68174454-68174473 | MS.gene004305:intron | 40.0% |
| !! | GAATATAGACGTTTCTGGCT+GGG | - | chr2.4:68172209-68172228 | MS.gene004305:intron | 40.0% |
| AACCTACCACTACTACTACG+TGG | - | chr2.4:68172775-68172794 | MS.gene004305:intron | 45.0% | |
| AACTGCGTGACTTAAGTCAC+CGG | - | chr2.4:68172094-68172113 | MS.gene004305:intron | 45.0% | |
| AAGAAAGGGGAACAGTGATG+CGG | + | chr2.4:68173002-68173021 | None:intergenic | 45.0% | |
| ACGGGCCCTTTACAAATGAA+CGG | - | chr2.4:68172470-68172489 | MS.gene004305:CDS | 45.0% | |
| ATGAGAGAAGAGTGGAGATG+GGG | - | chr2.4:68172001-68172020 | MS.gene004305:intron | 45.0% | |
| GGAGGAAGAAATTCATGTGG+AGG | - | chr2.4:68173902-68173921 | MS.gene004305:intron | 45.0% | |
| GGTGATAAAGAGGACAACAG+TGG | + | chr2.4:68172306-68172325 | None:intergenic | 45.0% | |
| GTTGCTTAACATGTGCCCTA+AGG | - | chr2.4:68174610-68174629 | MS.gene004305:intron | 45.0% | |
| TTAGGTCCACGTAGTAGTAG+TGG | + | chr2.4:68172784-68172803 | None:intergenic | 45.0% | |
| TTGACTTATAGCCGATAGCG+TGG | + | chr2.4:68174717-68174736 | None:intergenic | 45.0% | |
| TTGGTCACAAGATTTGTGGC+GGG | - | chr2.4:68172881-68172900 | MS.gene004305:intron | 45.0% | |
| ! | ATTCCAACAAGAGCGCGATT+TGG | - | chr2.4:68171899-68171918 | MS.gene004305:CDS | 45.0% |
| ! | TGAGGTAACTTGTGCCTTGA+GGG | + | chr2.4:68174471-68174490 | None:intergenic | 45.0% |
| ! | TTGAGGTAACTTGTGCCTTG+AGG | + | chr2.4:68174472-68174491 | None:intergenic | 45.0% |
| !! | GAGGAAAGCACAACAGGTTT+TGG | - | chr2.4:68173479-68173498 | MS.gene004305:intron | 45.0% |
| !! | GGAATATAGACGTTTCTGGC+TGG | - | chr2.4:68172208-68172227 | MS.gene004305:intron | 45.0% |
| !! | TTTCTGGCTGGGAATAGTAC+AGG | - | chr2.4:68172220-68172239 | MS.gene004305:CDS | 45.0% |
| AATAGCTATGGCAACGGGTC+GGG | - | chr2.4:68174735-68174754 | MS.gene004305:intron | 50.0% | |
| CAATAGCTATGGCAACGGGT+CGG | - | chr2.4:68174734-68174753 | MS.gene004305:intron | 50.0% | |
| GAAAGAGATAGGGGTAGGGT+TGG | + | chr2.4:68174800-68174819 | None:intergenic | 50.0% | |
| GTCCACGTAGTAGTAGTGGT+AGG | + | chr2.4:68172780-68172799 | None:intergenic | 50.0% | |
| TATAGGGGTTGTTCTTCCCC+TGG | + | chr2.4:68171831-68171850 | None:intergenic | 50.0% | |
| TCGACACAAAAGTGGGAGGA+TGG | - | chr2.4:68171189-68171208 | MS.gene004305:intron | 50.0% | |
| ATAGCTATGGCAACGGGTCG+GGG | - | chr2.4:68174736-68174755 | MS.gene004305:intron | 55.0% | |
| GCACCAAATCGCGCTCTTGT+TGG | + | chr2.4:68171905-68171924 | None:intergenic | 55.0% | |
| TCGAGACTTACGATAGGCGG+CGG | + | chr2.4:68171166-68171185 | None:intergenic | 55.0% | |
| TTGCGGCGATTGACTGACGA+AGG | + | chr2.4:68171140-68171159 | None:intergenic | 55.0% | |
| TAGCTATGGCAACGGGTCGG+GGG | - | chr2.4:68174737-68174756 | MS.gene004305:intron | 60.0% | |
| ACGATAGGCGGCGGCGTTTG+CGG | + | chr2.4:68171157-68171176 | None:intergenic | 65.0% | |
| CTATGGCAACGGGTCGGGGG+TGG | - | chr2.4:68174740-68174759 | MS.gene004305:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 68171111 | 68174900 | 68171111 | ID=MS.gene004305 |
| chr2.4 | mRNA | 68171111 | 68174900 | 68171111 | ID=MS.gene004305.t1;Parent=MS.gene004305 |
| chr2.4 | exon | 68174837 | 68174900 | 68174837 | ID=MS.gene004305.t1.exon1;Parent=MS.gene004305.t1 |
| chr2.4 | CDS | 68174837 | 68174900 | 68174837 | ID=cds.MS.gene004305.t1;Parent=MS.gene004305.t1 |
| chr2.4 | exon | 68172217 | 68172779 | 68172217 | ID=MS.gene004305.t1.exon2;Parent=MS.gene004305.t1 |
| chr2.4 | CDS | 68172217 | 68172779 | 68172217 | ID=cds.MS.gene004305.t1;Parent=MS.gene004305.t1 |
| chr2.4 | exon | 68171881 | 68172018 | 68171881 | ID=MS.gene004305.t1.exon3;Parent=MS.gene004305.t1 |
| chr2.4 | CDS | 68171881 | 68172018 | 68171881 | ID=cds.MS.gene004305.t1;Parent=MS.gene004305.t1 |
| chr2.4 | exon | 68171111 | 68171188 | 68171111 | ID=MS.gene004305.t1.exon4;Parent=MS.gene004305.t1 |
| chr2.4 | CDS | 68171111 | 68171188 | 68171111 | ID=cds.MS.gene004305.t1;Parent=MS.gene004305.t1 |
| Gene Sequence |
| Protein sequence |
