AlfalfaGEDB | MS.gene00439

M. sativa cultivar XinJiangDaYe / MS.gene00439

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00439.t1	XP_003589168.2	94.2	173	8	2	41	212	96	267	8.10E-81	310.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00439.t1	Q9FUA4	85.1	67	10	0	41	107	202	268	1.0e-23	111.7

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00439.t1	G7I3I4	94.2	173	8	2	41	212	96	267	5.8e-81	310.1

TFs/TRs:

Gene ID	Type	Classification
MS.gene00439.t1	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00439.t1	MTR_1g019240	94.554	202	9	2	12	212	67	267	1.52e-135	380
MS.gene00439.t1	MTR_1g019890	87.069	116	13	2	91	205	1	115	5.79e-66	200
MS.gene00439.t1	MTR_5g017040	75.556	90	17	2	39	126	114	200	1.80e-34	125
MS.gene00439.t1	MTR_7g099540	63.736	91	22	1	30	120	252	331	3.68e-29	113
MS.gene00439.t1	MTR_7g099540	62.637	91	29	1	30	120	252	337	4.33e-29	113
MS.gene00439.t1	MTR_1g084980	61.538	91	35	0	30	120	462	552	2.10e-28	112
MS.gene00439.t1	MTR_1g069155	62.637	91	23	1	30	120	317	396	2.39e-28	111
MS.gene00439.t1	MTR_3g449770	66.234	77	24	1	31	107	310	384	3.35e-26	105
MS.gene00439.t1	MTR_7g111320	56.667	90	35	1	30	115	432	521	2.54e-22	94.7
MS.gene00439.t1	MTR_7g110810	67.213	61	19	1	33	92	204	264	1.43e-19	85.9
MS.gene00439.t1	MTR_4g131160	50.602	83	38	2	18	97	182	264	1.11e-18	83.6
MS.gene00439.t1	MTR_4g131160	50.602	83	38	2	18	97	185	267	1.20e-18	83.6
MS.gene00439.t1	MTR_1g080890	46.835	79	36	1	20	92	177	255	3.31e-17	79.0
MS.gene00439.t1	MTR_5g005110	40.449	89	53	0	19	107	213	301	1.09e-15	74.7
MS.gene00439.t1	MTR_3g103030	41.892	74	43	0	34	107	233	306	4.81e-14	70.1
MS.gene00439.t1	MTR_1g106470	36.709	79	50	0	29	107	195	273	1.62e-13	68.2
MS.gene00439.t1	MTR_7g053410	39.560	91	47	2	13	95	293	383	7.13e-13	67.0
MS.gene00439.t1	MTR_8g065740	43.210	81	40	2	21	95	291	371	7.65e-13	67.0
MS.gene00439.t1	MTR_7g053410	39.560	91	47	2	13	95	293	383	8.20e-13	67.0
MS.gene00439.t1	MTR_3g116770	38.043	92	51	2	10	95	166	257	8.70e-13	66.6
MS.gene00439.t1	MTR_3g116770	38.043	92	51	2	10	95	166	257	8.77e-13	66.6
MS.gene00439.t1	MTR_1g106460	43.548	62	35	0	46	107	254	315	1.01e-12	66.2
MS.gene00439.t1	MTR_4g070320	41.176	85	48	2	12	95	126	209	3.11e-12	65.1
MS.gene00439.t1	MTR_1g106480	54.348	46	21	0	47	92	86	131	3.17e-12	62.4
MS.gene00439.t1	MTR_8g012290	47.692	65	33	1	32	95	293	357	3.44e-12	65.1
MS.gene00439.t1	MTR_8g012290	47.692	65	33	1	32	95	293	357	3.61e-12	65.1
MS.gene00439.t1	MTR_1g084980	72.500	40	11	0	30	69	462	501	3.96e-12	65.1
MS.gene00439.t1	MTR_1g018090	36.842	76	48	0	29	104	273	348	4.67e-12	64.3
MS.gene00439.t1	MTR_1g017350	46.154	65	34	1	32	95	262	326	5.28e-12	64.3
MS.gene00439.t1	MTR_1g017350	46.154	65	34	1	32	95	262	326	5.51e-12	64.3
MS.gene00439.t1	MTR_8g062240	44.615	65	35	1	32	95	153	217	5.53e-12	63.5
MS.gene00439.t1	MTR_1g017350	46.154	65	34	1	32	95	262	326	5.73e-12	64.3
MS.gene00439.t1	MTR_1g017350	46.154	65	34	1	32	95	262	326	6.04e-12	64.3
MS.gene00439.t1	MTR_1g070870	41.489	94	48	2	11	97	98	191	2.01e-11	62.4
MS.gene00439.t1	MTR_1g072320	51.786	56	27	0	41	96	471	526	2.07e-11	62.8
MS.gene00439.t1	MTR_5g048860	40.741	81	42	2	21	95	351	431	2.17e-11	62.8
MS.gene00439.t1	MTR_5g037250	37.895	95	47	3	13	95	84	178	2.19e-11	61.6
MS.gene00439.t1	MTR_3g498825	45.205	73	38	2	32	103	149	220	2.22e-11	62.4
MS.gene00439.t1	MTR_1g070870	42.697	89	44	2	16	97	100	188	2.30e-11	62.0
MS.gene00439.t1	MTR_5g079500	37.805	82	46	1	16	92	199	280	7.85e-11	60.8
MS.gene00439.t1	MTR_7g017320	32.667	150	79	7	29	166	47	186	8.93e-11	60.8
MS.gene00439.t1	MTR_7g017320	32.667	150	79	7	29	166	47	186	8.96e-11	60.5
MS.gene00439.t1	MTR_8g098275	48.077	52	27	0	41	92	402	453	9.14e-11	60.8
MS.gene00439.t1	MTR_8g098275	48.077	52	27	0	41	92	309	360	9.26e-11	60.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00439.t1	AT4G36930	84.722	72	11	0	36	107	197	268	2.35e-35	128
MS.gene00439.t1	AT5G67110	75.000	84	21	0	29	112	86	169	1.65e-34	122
MS.gene00439.t1	AT1G09530	62.105	95	26	2	23	115	328	414	6.94e-29	113
MS.gene00439.t1	AT1G09530	62.105	95	26	2	23	115	328	414	6.94e-29	113
MS.gene00439.t1	AT1G09530	62.105	95	26	2	23	115	328	414	6.94e-29	113
MS.gene00439.t1	AT1G09530	62.105	95	26	2	23	115	328	414	6.94e-29	113
MS.gene00439.t1	AT1G09530	62.105	95	26	2	23	115	328	414	6.94e-29	113
MS.gene00439.t1	AT1G09530	62.105	95	26	2	23	115	328	414	6.94e-29	113
MS.gene00439.t1	AT2G20180	73.016	63	17	0	30	92	207	269	6.03e-26	103
MS.gene00439.t1	AT2G20180	73.016	63	17	0	30	92	207	269	6.03e-26	103
MS.gene00439.t1	AT2G20180	73.016	63	17	0	30	92	207	269	6.03e-26	103
MS.gene00439.t1	AT2G20180	73.016	63	17	0	30	92	278	340	1.41e-25	103
MS.gene00439.t1	AT2G20180	73.016	63	17	0	30	92	278	340	1.41e-25	103
MS.gene00439.t1	AT2G20180	73.016	63	17	0	30	92	278	340	1.41e-25	103
MS.gene00439.t1	AT2G20180	73.016	63	17	0	30	92	278	340	1.41e-25	103
MS.gene00439.t1	AT2G20180	72.581	62	17	0	30	91	278	339	4.37e-25	100
MS.gene00439.t1	AT4G00050	65.714	70	24	0	23	92	98	167	4.12e-24	97.4
MS.gene00439.t1	AT4G00050	70.968	62	18	0	31	92	208	269	7.79e-24	97.8
MS.gene00439.t1	AT4G00050	70.968	62	18	0	31	92	208	269	8.71e-24	97.8
MS.gene00439.t1	AT4G28800	57.692	78	32	1	30	107	249	325	1.26e-21	92.4
MS.gene00439.t1	AT2G46970	33.846	195	94	6	13	179	184	371	2.28e-21	91.3
MS.gene00439.t1	AT2G46970	33.846	195	94	6	13	179	175	362	2.35e-21	90.9
MS.gene00439.t1	AT2G46970	33.846	195	94	6	13	179	206	393	3.65e-21	90.9
MS.gene00439.t1	AT4G28800	64.062	64	23	0	30	93	261	324	6.51e-21	90.1
MS.gene00439.t1	AT4G28815	59.375	64	26	0	30	93	68	131	1.04e-20	87.0
MS.gene00439.t1	AT3G59060	54.651	86	36	1	30	115	250	332	2.48e-20	88.6
MS.gene00439.t1	AT3G59060	54.651	86	36	1	30	115	250	332	2.62e-20	88.6
MS.gene00439.t1	AT3G59060	54.651	86	36	1	30	115	250	332	2.62e-20	88.6
MS.gene00439.t1	AT3G59060	54.651	86	36	1	30	115	250	332	2.62e-20	88.6
MS.gene00439.t1	AT4G28790	66.129	62	21	0	30	91	271	332	2.72e-20	88.2
MS.gene00439.t1	AT2G24260	55.556	72	28	1	25	92	26	97	3.55e-20	85.9
MS.gene00439.t1	AT4G28815	59.375	64	26	0	30	93	144	207	3.85e-20	86.7
MS.gene00439.t1	AT2G43010	58.824	85	30	1	31	115	252	331	7.46e-20	87.0
MS.gene00439.t1	AT2G43010	58.824	85	30	1	31	115	252	331	7.47e-20	87.0
MS.gene00439.t1	AT2G43010	58.824	85	30	1	31	115	252	331	7.48e-20	87.0
MS.gene00439.t1	AT4G28790	62.121	66	25	0	30	95	271	336	7.55e-20	86.3
MS.gene00439.t1	AT2G43010	58.824	85	30	1	31	115	259	338	9.35e-20	87.0
MS.gene00439.t1	AT2G43010	58.824	85	30	1	31	115	294	373	1.22e-19	86.7
MS.gene00439.t1	AT2G24260	55.556	72	28	1	25	92	129	200	1.63e-19	85.5
MS.gene00439.t1	AT5G58010	47.778	90	40	2	28	110	97	186	1.92e-19	84.7
MS.gene00439.t1	AT4G30980	53.521	71	32	1	28	97	128	198	7.13e-19	83.2
MS.gene00439.t1	AT4G30980	53.521	71	32	1	28	97	176	246	2.12e-18	82.4
MS.gene00439.t1	AT3G62090	54.545	66	30	0	33	98	168	233	4.67e-16	75.9
MS.gene00439.t1	AT3G62090	54.545	66	30	0	33	98	185	250	5.22e-16	75.9
MS.gene00439.t1	AT4G33880	36.190	105	60	1	10	107	239	343	5.85e-16	75.5
MS.gene00439.t1	AT5G61270	47.619	84	42	1	12	95	56	137	8.11e-16	74.3
MS.gene00439.t1	AT5G61270	47.619	84	42	1	12	95	56	137	8.11e-16	74.3
MS.gene00439.t1	AT5G61270	47.619	84	42	1	12	95	144	225	1.43e-15	74.7
MS.gene00439.t1	AT5G67110	54.545	77	13	1	29	105	86	140	2.60e-15	71.6
MS.gene00439.t1	AT1G27740	36.842	95	56	1	13	107	154	244	9.45e-15	71.2
MS.gene00439.t1	AT4G28811	63.492	63	23	0	30	92	351	413	1.95e-14	71.6
MS.gene00439.t1	AT5G50915	37.705	122	69	5	22	138	125	244	2.37e-13	67.4
MS.gene00439.t1	AT5G50915	37.705	122	69	5	22	138	125	244	2.37e-13	67.4
MS.gene00439.t1	AT2G14760	36.559	93	58	1	16	107	235	327	3.27e-13	67.8
MS.gene00439.t1	AT2G14760	36.709	79	50	0	29	107	236	314	3.59e-13	67.4
MS.gene00439.t1	AT5G50915	37.398	123	70	5	21	138	124	244	3.78e-13	67.0
MS.gene00439.t1	AT5G50915	37.398	123	70	5	21	138	124	244	3.78e-13	67.0
MS.gene00439.t1	AT5G67110	62.745	51	19	0	29	79	86	136	4.75e-13	64.7
MS.gene00439.t1	AT5G43175	35.443	79	51	0	29	107	131	209	1.14e-12	65.1
MS.gene00439.t1	AT3G07340	47.692	65	33	1	32	95	260	324	1.52e-12	66.2
MS.gene00439.t1	AT5G48560	47.692	65	33	1	32	95	303	367	1.73e-12	65.9
MS.gene00439.t1	AT3G07340	47.692	65	33	1	32	95	260	324	1.77e-12	65.9
MS.gene00439.t1	AT5G48560	43.038	79	40	2	22	95	289	367	1.91e-12	65.9
MS.gene00439.t1	AT5G62610	39.362	94	50	3	32	122	155	244	1.94e-12	65.1
MS.gene00439.t1	AT5G62610	39.362	94	50	3	32	122	155	244	1.94e-12	65.1
MS.gene00439.t1	AT1G68920	47.692	65	33	1	32	95	304	368	2.66e-12	65.5
MS.gene00439.t1	AT4G36540	46.154	65	34	1	32	95	143	207	2.68e-12	64.7
MS.gene00439.t1	AT4G36540	46.154	65	34	1	32	95	143	207	2.85e-12	64.7
MS.gene00439.t1	AT1G68920	47.692	65	33	1	32	95	305	369	2.87e-12	65.5
MS.gene00439.t1	AT1G68920	47.692	65	33	1	32	95	305	369	2.87e-12	65.5
MS.gene00439.t1	AT1G68920	47.692	65	33	1	32	95	305	369	2.87e-12	65.5
MS.gene00439.t1	AT1G73830	44.615	65	35	1	32	95	149	213	6.01e-12	63.5
MS.gene00439.t1	AT2G18300	46.154	65	34	1	32	95	187	251	6.73e-12	63.9
MS.gene00439.t1	AT2G18300	46.154	65	34	1	32	95	187	251	6.78e-12	63.9
MS.gene00439.t1	AT1G73830	44.615	65	35	1	32	95	149	213	6.83e-12	63.5
MS.gene00439.t1	AT2G18300	46.154	65	34	1	32	95	187	251	7.40e-12	63.9
MS.gene00439.t1	AT3G23690	44.615	65	35	1	32	95	193	257	8.86e-12	63.9
MS.gene00439.t1	AT1G10120	39.785	93	47	3	12	95	180	272	8.92e-12	63.5
MS.gene00439.t1	AT1G10120	39.785	93	47	3	12	95	180	272	8.92e-12	63.5
MS.gene00439.t1	AT4G34530	43.077	65	36	1	32	95	174	238	9.60e-12	63.5
MS.gene00439.t1	AT1G02340	40.964	83	38	1	10	92	119	190	9.64e-12	63.2
MS.gene00439.t1	AT1G02340	40.964	83	38	1	10	92	112	183	1.01e-11	63.2
MS.gene00439.t1	AT1G59640	44.615	65	35	1	32	95	138	202	1.03e-11	62.8
MS.gene00439.t1	AT1G26260	44.615	65	35	1	32	95	203	267	1.28e-11	63.2
MS.gene00439.t1	AT1G26260	44.615	65	35	1	32	95	225	289	1.38e-11	63.2
MS.gene00439.t1	AT1G26260	44.615	65	35	1	32	95	225	289	1.38e-11	63.2
MS.gene00439.t1	AT1G26260	44.615	65	35	1	32	95	225	289	1.38e-11	63.2
MS.gene00439.t1	AT1G26260	44.615	65	35	1	32	95	225	289	1.38e-11	63.2
MS.gene00439.t1	AT1G59640	46.774	62	32	1	32	92	138	199	1.57e-11	62.8
MS.gene00439.t1	AT1G26260	44.615	65	35	1	32	95	174	238	1.67e-11	62.8
MS.gene00439.t1	AT1G63650	53.846	52	24	0	41	92	406	457	2.65e-11	62.8
MS.gene00439.t1	AT1G63650	53.846	52	24	0	41	92	406	457	2.65e-11	62.8
MS.gene00439.t1	AT1G63650	53.846	52	24	0	41	92	406	457	2.65e-11	62.8
MS.gene00439.t1	AT1G18400	43.077	65	36	1	32	95	147	211	2.94e-11	61.2
MS.gene00439.t1	AT1G18400	43.077	65	36	1	32	95	147	211	3.27e-11	61.6
MS.gene00439.t1	AT1G03040	42.045	88	41	2	20	97	125	212	3.31e-11	61.6
MS.gene00439.t1	AT1G03040	42.045	88	41	2	20	97	120	207	3.76e-11	61.6
MS.gene00439.t1	AT1G25330	44.615	65	35	1	32	95	106	170	4.13e-11	60.8
MS.gene00439.t1	AT1G03040	42.045	88	41	2	20	97	125	212	4.17e-11	61.6
MS.gene00439.t1	AT1G66470	43.056	72	36	1	21	92	191	257	5.84e-11	60.8
MS.gene00439.t1	AT2G22770	53.846	52	24	0	41	92	133	184	8.71e-11	60.8

Find 41 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TACATCACCTTGTTAGAATT+TGG	0.111527	1.4:+3928474	None:intergenic
CAACATGCCACAACTGATTA+TGG	0.244370	1.4:-3927263	MS.gene00439:CDS
ATTAATTCTGCAGATGTTAA+TGG	0.295896	1.4:-3927666	MS.gene00439:intron
TTTGACATGCTGCATTGTTC+TGG	0.325901	1.4:+3927467	None:intergenic
GTTCCATAATTTGTCTGAAA+AGG	0.391347	1.4:-3928636	MS.gene00439:intron
TTGCATCCAATGTCGTTATC+AGG	0.395094	1.4:-3927626	MS.gene00439:CDS
GCGAAATATTCATTGTTAGC+AGG	0.465887	1.4:+3927509	None:intergenic
AAGCTGCTTTAAATATTCAA+TGG	0.465998	1.4:+3928324	None:intergenic
AATCTTGATGAGGGTAATAG+TGG	0.470391	1.4:-3927563	MS.gene00439:CDS
GGTGGGGCAGCCTTTGATGA+TGG	0.476408	1.4:+3928695	None:intergenic
TCAAACATGAACCTTAATAG+AGG	0.484571	1.4:+3927379	None:intergenic
TTTGAAGAAGAACGTGGTGG+TGG	0.492656	1.4:+3928677	None:intergenic
ATTATGGATACAACAAGGAT+TGG	0.493878	1.4:-3927247	MS.gene00439:CDS
AATATTCATTGTTAGCAGGC+GGG	0.525894	1.4:+3927513	None:intergenic
TTGAAGAAGAACGTGGTGGT+GGG	0.545725	1.4:+3928678	None:intergenic
ATATTCATTGTTAGCAGGCG+GGG	0.547212	1.4:+3927514	None:intergenic
TTCAGAGTTGCCATCATCAA+AGG	0.550812	1.4:-3928705	MS.gene00439:CDS
AATGAATGGAACAGAGAAGG+AGG	0.550832	1.4:-3928539	MS.gene00439:intron
CAGATGTTAATGGTGAGAAA+TGG	0.552941	1.4:-3927656	MS.gene00439:CDS
GTTTATGACACATCAGAAGA+AGG	0.583034	1.4:+3927217	None:intergenic
TGAAGAAGAACGTGGTGGTG+GGG	0.583658	1.4:+3928679	None:intergenic
TGAGTTGTTCAATCTTGATG+AGG	0.583812	1.4:-3927573	MS.gene00439:CDS
AAATATTCATTGTTAGCAGG+CGG	0.584130	1.4:+3927512	None:intergenic
TCAATCTGTAATCATACCCT+CGG	0.590382	1.4:-3927444	MS.gene00439:CDS
TCAGTTGTGGCATGTTGTTG+TGG	0.593873	1.4:+3927269	None:intergenic
TTTAATTCCAAATTCTAACA+AGG	0.599565	1.4:-3928481	MS.gene00439:intron
GAGTTGTTCAATCTTGATGA+GGG	0.608970	1.4:-3927572	MS.gene00439:CDS
TAAAGCTTCAATGTTAGATG+AGG	0.610444	1.4:-3928347	MS.gene00439:CDS
AGAGGTTTGAAAACTTGATG+AGG	0.611385	1.4:+3927397	None:intergenic
TGAAGCTAAATTTGTCGCCG+AGG	0.617569	1.4:+3927427	None:intergenic
GATCCTCCTGATAACGACAT+TGG	0.621566	1.4:+3927620	None:intergenic
GTTGTATCCATAATCAGTTG+TGG	0.626275	1.4:+3927256	None:intergenic
CTTCTCTTTGAAGAAGAACG+TGG	0.628949	1.4:+3928671	None:intergenic
AGATTGAACAACTCAGTCTG+AGG	0.648355	1.4:+3927581	None:intergenic
CTCTTTGAAGAAGAACGTGG+TGG	0.649691	1.4:+3928674	None:intergenic
GAAGCTAAATTTGTCGCCGA+GGG	0.651831	1.4:+3927428	None:intergenic
TCAGTCTGAGGAAACATCGT+AGG	0.657116	1.4:+3927593	None:intergenic
CTAACAATGAATATTTCGCA+CGG	0.657592	1.4:-3927505	MS.gene00439:CDS
CATCCAATGTCGTTATCAGG+AGG	0.666461	1.4:-3927623	MS.gene00439:CDS
TGTCGTTATCAGGAGGATCG+CGG	0.666590	1.4:-3927616	MS.gene00439:CDS
AACTGATTATGGATACAACA+AGG	0.695121	1.4:-3927252	MS.gene00439:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATGTTAAATACTATTATGAA+TGG	-	chr1.4:3927728-3927747	MS.gene00439:intron	15.0%
!!	ATTAAAATTCAAAATCAGAA+AGG	+	chr1.4:3927415-3927434	None:intergenic	15.0%
!!	TATCTTATGTACATATTATA+AGG	+	chr1.4:3927909-3927928	None:intergenic	15.0%
!!!	AAAAAGAATCTTTCTTTTTA+AGG	+	chr1.4:3927381-3927400	None:intergenic	15.0%
!!!	AAAAGAATCTTTCTTTTTAA+GGG	+	chr1.4:3927380-3927399	None:intergenic	15.0%
!!!	AAGATATTTTCAACTTATTT+TGG	-	chr1.4:3927923-3927942	MS.gene00439:intron	15.0%
!!!	TGATTTTGAATTTTAATGAA+TGG	-	chr1.4:3927418-3927437	MS.gene00439:CDS	15.0%
!!	ACTTATAGCTTATATGAAAA+CGG	-	chr1.4:3927975-3927994	MS.gene00439:intron	20.0%
!!	TTTAATTCCAAATTCTAACA+AGG	-	chr1.4:3927490-3927509	MS.gene00439:CDS	20.0%
!	AATTTATCCAAAGTGACTAT+AGG	-	chr1.4:3928239-3928258	MS.gene00439:intron	25.0%
!	ACTTATTTACGCTTATTTAC+TGG	-	chr1.4:3927837-3927856	MS.gene00439:intron	25.0%
!	ATTAATTCTGCAGATGTTAA+TGG	-	chr1.4:3928305-3928324	MS.gene00439:intron	25.0%
!!	AAGCTGCTTTAAATATTCAA+TGG	+	chr1.4:3927650-3927669	None:intergenic	25.0%
!!	AAGTTTTCAAACCTCTATTA+AGG	-	chr1.4:3928581-3928600	MS.gene00439:intron	25.0%
!!!	TTTTGTTTGAAGAATGATGA+AGG	-	chr1.4:3927243-3927262	MS.gene00439:CDS	25.0%
	AAATATTCATTGTTAGCAGG+CGG	+	chr1.4:3928462-3928481	None:intergenic	30.0%
	AACTGATTATGGATACAACA+AGG	-	chr1.4:3928719-3928738	MS.gene00439:CDS	30.0%
	AAGTAACAATTAGTCCATGA+TGG	+	chr1.4:3928274-3928293	None:intergenic	30.0%
	ATTATGGATACAACAAGGAT+TGG	-	chr1.4:3928724-3928743	MS.gene00439:CDS	30.0%
	CTAACAATGAATATTTCGCA+CGG	-	chr1.4:3928466-3928485	MS.gene00439:intron	30.0%
	TAAAGCTTCAATGTTAGATG+AGG	-	chr1.4:3927624-3927643	MS.gene00439:CDS	30.0%
	TAAGCGTAAATAAGTCAATC+CGG	+	chr1.4:3927832-3927851	None:intergenic	30.0%
	TACATCACCTTGTTAGAATT+TGG	+	chr1.4:3927500-3927519	None:intergenic	30.0%
	TCAAACATGAACCTTAATAG+AGG	+	chr1.4:3928595-3928614	None:intergenic	30.0%
	TTGACAATTTGACATGGTTA+AGG	+	chr1.4:3927776-3927795	None:intergenic	30.0%
	TTTAATGAATGGAACAGAGA+AGG	-	chr1.4:3927429-3927448	MS.gene00439:CDS	30.0%
!	AGTGTTGTTGATGAAACAAA+AGG	-	chr1.4:3927795-3927814	MS.gene00439:intron	30.0%
!	ATTAGTCCATGATGGAATAA+TGG	+	chr1.4:3928266-3928285	None:intergenic	30.0%
!	GAACCTTTTCAGACAAATTA+TGG	+	chr1.4:3927341-3927360	None:intergenic	30.0%
!	GTTCCATAATTTGTCTGAAA+AGG	-	chr1.4:3927335-3927354	MS.gene00439:intron	30.0%
!	GTTGATGAAACAAAAGGTTA+AGG	-	chr1.4:3927801-3927820	MS.gene00439:intron	30.0%
!!	AACTCTTATTTCTGATGTGA+AGG	-	chr1.4:3928669-3928688	MS.gene00439:CDS	30.0%
	AATATTCATTGTTAGCAGGC+GGG	+	chr1.4:3928461-3928480	None:intergenic	35.0%
	AATCTTGATGAGGGTAATAG+TGG	-	chr1.4:3928408-3928427	MS.gene00439:intron	35.0%
	ACAAAAGGTTAAGGTTTGTC+CGG	-	chr1.4:3927810-3927829	MS.gene00439:intron	35.0%
	AGAGGTTTGAAAACTTGATG+AGG	+	chr1.4:3928577-3928596	None:intergenic	35.0%
	ATAGGTCCATTATTCCATCA+TGG	-	chr1.4:3928257-3928276	MS.gene00439:intron	35.0%
	CAACACTTGACAATTTGACA+TGG	+	chr1.4:3927782-3927801	None:intergenic	35.0%
	CAGATGTTAATGGTGAGAAA+TGG	-	chr1.4:3928315-3928334	MS.gene00439:CDS	35.0%
	GAGTTGTTCAATCTTGATGA+GGG	-	chr1.4:3928399-3928418	MS.gene00439:intron	35.0%
	GATGATCCAAATTGAGTCAT+AGG	+	chr1.4:3928119-3928138	None:intergenic	35.0%
	GCGAAATATTCATTGTTAGC+AGG	+	chr1.4:3928465-3928484	None:intergenic	35.0%
	GTTGTATCCATAATCAGTTG+TGG	+	chr1.4:3928718-3928737	None:intergenic	35.0%
	TCAATCTGTAATCATACCCT+CGG	-	chr1.4:3928527-3928546	MS.gene00439:CDS	35.0%
	TGAGTTGTTCAATCTTGATG+AGG	-	chr1.4:3928398-3928417	MS.gene00439:intron	35.0%
!	TAATGGACCTATAGTCACTT+TGG	+	chr1.4:3928249-3928268	None:intergenic	35.0%
!!!	CTTATTTTGGTAAGCTCTTC+AGG	-	chr1.4:3927936-3927955	MS.gene00439:intron	35.0%
	AATGAATGGAACAGAGAAGG+AGG	-	chr1.4:3927432-3927451	MS.gene00439:CDS	40.0%
	ACTCGACCTATGACTCAATT+TGG	-	chr1.4:3928110-3928129	MS.gene00439:intron	40.0%
	AGATTGAACAACTCAGTCTG+AGG	+	chr1.4:3928393-3928412	None:intergenic	40.0%
	ATATTCATTGTTAGCAGGCG+GGG	+	chr1.4:3928460-3928479	None:intergenic	40.0%
	ATTGAGTCATAGGTCGAGTT+TGG	+	chr1.4:3928109-3928128	None:intergenic	40.0%
	CAACATGCCACAACTGATTA+TGG	-	chr1.4:3928708-3928727	MS.gene00439:CDS	40.0%
	CTGAGCTTCACAATTAGCTA+AGG	-	chr1.4:3928149-3928168	MS.gene00439:intron	40.0%
	TTCAGAGTTGCCATCATCAA+AGG	-	chr1.4:3927266-3927285	MS.gene00439:CDS	40.0%
	TTGCATCCAATGTCGTTATC+AGG	-	chr1.4:3928345-3928364	MS.gene00439:CDS	40.0%
	TTTGACATGCTGCATTGTTC+TGG	+	chr1.4:3928507-3928526	None:intergenic	40.0%
!	CTTCTCTTTGAAGAAGAACG+TGG	+	chr1.4:3927303-3927322	None:intergenic	40.0%
	CATAGGTCGAGTTTGGACTT+CGG	+	chr1.4:3928102-3928121	None:intergenic	45.0%
	CATCCAATGTCGTTATCAGG+AGG	-	chr1.4:3928348-3928367	MS.gene00439:CDS	45.0%
	GAAGCTAAATTTGTCGCCGA+GGG	+	chr1.4:3928546-3928565	None:intergenic	45.0%
	TCAGTCTGAGGAAACATCGT+AGG	+	chr1.4:3928381-3928400	None:intergenic	45.0%
	TCAGTTGTGGCATGTTGTTG+TGG	+	chr1.4:3928705-3928724	None:intergenic	45.0%
	TGAAGCTAAATTTGTCGCCG+AGG	+	chr1.4:3928547-3928566	None:intergenic	45.0%
	TTGAAGAAGAACGTGGTGGT+GGG	+	chr1.4:3927296-3927315	None:intergenic	45.0%
	TTTGAAGAAGAACGTGGTGG+TGG	+	chr1.4:3927297-3927316	None:intergenic	45.0%
!	CTCTTTGAAGAAGAACGTGG+TGG	+	chr1.4:3927300-3927319	None:intergenic	45.0%
!	GATCCTCCTGATAACGACAT+TGG	+	chr1.4:3928354-3928373	None:intergenic	45.0%
	TGTCGTTATCAGGAGGATCG+CGG	-	chr1.4:3928355-3928374	MS.gene00439:CDS	50.0%
!	TGAAGAAGAACGTGGTGGTG+GGG	+	chr1.4:3927295-3927314	None:intergenic	50.0%
	GGTGGGGCAGCCTTTGATGA+TGG	+	chr1.4:3927279-3927298	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	3927219	3928774	3927219	ID=MS.gene00439
chr1.4	mRNA	3927219	3928774	3927219	ID=MS.gene00439.t1;Parent=MS.gene00439
chr1.4	exon	3928637	3928774	3928637	ID=MS.gene00439.t1.exon1;Parent=MS.gene00439.t1
chr1.4	CDS	3928637	3928774	3928637	ID=cds.MS.gene00439.t1;Parent=MS.gene00439.t1
chr1.4	exon	3928482	3928547	3928482	ID=MS.gene00439.t1.exon2;Parent=MS.gene00439.t1
chr1.4	CDS	3928482	3928547	3928482	ID=cds.MS.gene00439.t1;Parent=MS.gene00439.t1
chr1.4	exon	3928309	3928374	3928309	ID=MS.gene00439.t1.exon3;Parent=MS.gene00439.t1
chr1.4	CDS	3928309	3928374	3928309	ID=cds.MS.gene00439.t1;Parent=MS.gene00439.t1
chr1.4	exon	3927391	3927675	3927391	ID=MS.gene00439.t1.exon4;Parent=MS.gene00439.t1
chr1.4	CDS	3927391	3927675	3927391	ID=cds.MS.gene00439.t1;Parent=MS.gene00439.t1
chr1.4	exon	3927219	3927302	3927219	ID=MS.gene00439.t1.exon5;Parent=MS.gene00439.t1
chr1.4	CDS	3927219	3927302	3927219	ID=cds.MS.gene00439.t1;Parent=MS.gene00439.t1

Gene Sequence

>MS.gene00439

ATGACTTTTTTTATTCTTTTTTTTTTTTGTTTGAAGAATGATGAAGGTTCAGAGTTGCCATCATCAAAGGCTGCCCCACCACCACGTTCTTCTTCAAAGAGAAGCAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGGTTCAATTCAATATTTTTTACCCTTAAAAAGAAAGATTCTTTTTACTTTTTTTTGCCTTTCTGATTTTGAATTTTAATGAATGGAACAGAGAAGGAGGAGTAAGATTAATGAGAAATTGAAAGCTTTACAAAATTTAATTCCAAATTCTAACAAGGTGATGTATTTATGTATTATCTCTTTTTATACTTTATTTTAATTTATCTTACAAAATATTATTATTTTTCTTCTTATTCTTATTTTGTGTTTGTTTATTTTTAATAGACAGATAAAGCTTCAATGTTAGATGAGGCCATTGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAGTGAGTTTTCTTTCACTTAAGATGAACAATGAAACTCTAAAACATGTTAAATACTATTATGAATGGTTTTTTTGTGCAATACATTTGTCCTTAACCATGTCAAATTGTCAAGTGTTGTTGATGAAACAAAAGGTTAAGGTTTGTCCGGATTGACTTATTTACGCTTATTTACTGGTATAAGCACTTGTGAGCGTGTTTCAGAGAGCTTATAGTTAGAAACACCTTATAATATGTACATAAGATATTTTCAACTTATTTTGGTAAGCTCTTCAGGCTAGCTTAAGAAAACAACTTATAGCTTATATGAAAACGGTTTAAATTTATATCATCTTTTGTTATAGAAACAGTTTATATGTGAACACTTATATGTAAGTGTTTAACATAATCTCATAAACACTTAATCAAATCGTTTATCCGAAGTCCAAACTCGACCTATGACTCAATTTGGATCATCTTCTAGCTTACTGAGCTTCACAATTAGCTAAGGAAGAAATTAAATAAAAGAGCTTCTTGATTCTTTAAATATTTATTTTCTCTGTGAATGTTTCTTGAAAAATTTATCCAAAGTGACTATAGGTCCATTATTCCATCATGGACTAATTGTTACTTCAGTGTTTGTGATTAATTCTGCAGATGTTAATGGTGAGAAATGGTTATAGCTTGCATCCAATGTCGTTATCAGGAGGATCGCGGCCTACGATGTTTCCTCAGACTGAGTTGTTCAATCTTGATGAGGGTAATAGTGGATTTCACAATTCTAACAATGCAATTACCCCGCCTGCTAACAATGAATATTTCGCACGGCAAGCTTTTAGTTTTCCAGAACAATGCAGCATGTCAAATCAATCTGTAATCATACCCTCGGCGACAAATTTAGCTTCATTTGATACCTCATCAAGTTTTCAAACCTCTATTAAGGTTCATGTTTGATACAAAATAATTTTAATGAACAGTTACTTCATTTATTTGTTTATTGAACTTAACAACTCTTATTTCTGATGTGAAGGATGTTTTCAGCCACAACAACATGCCACAACTGATTATGGATACAACAAGGATTGGAAAAACTCCTTCTTCTGATGTGTCATAA

Protein sequence

>MS.gene00439.t1

MTFFILFFFCLKNDEGSELPSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMVRNGYSLHPMSLSGGSRPTMFPQTELFNLDEGNSGFHNSNNAITPPANNEYFARQAFSFPEQCSMSNQSVIIPSATNLASFDTSSSFQTSIKDVFSHNNMPQLIMDTTRIGKTPSSDVS