AlfalfaGEDB | MS.gene00439

M. sativa cultivar XinJiangDaYe / MS.gene00439

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00439.t1	XP_003589168.2	94.2	173	8	2	41	212	96	267	8.10E-81	310.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00439.t1	Q9FUA4	85.1	67	10	0	41	107	202	268	1.0e-23	111.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00439.t1	G7I3I4	94.2	173	8	2	41	212	96	267	5.8e-81	310.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene00439.t1	TF	bHLH

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00439.t1	MTR_1g019240	94.554	202	9	2	12	212	67	267	1.52e-135	380
MS.gene00439.t1	MTR_1g019890	87.069	116	13	2	91	205	1	115	5.79e-66	200
MS.gene00439.t1	MTR_5g017040	75.556	90	17	2	39	126	114	200	1.80e-34	125
MS.gene00439.t1	MTR_7g099540	63.736	91	22	1	30	120	252	331	3.68e-29	113
MS.gene00439.t1	MTR_7g099540	62.637	91	29	1	30	120	252	337	4.33e-29	113
MS.gene00439.t1	MTR_1g084980	61.538	91	35	0	30	120	462	552	2.10e-28	112
MS.gene00439.t1	MTR_1g069155	62.637	91	23	1	30	120	317	396	2.39e-28	111
MS.gene00439.t1	MTR_3g449770	66.234	77	24	1	31	107	310	384	3.35e-26	105
MS.gene00439.t1	MTR_7g111320	56.667	90	35	1	30	115	432	521	2.54e-22	94.7
MS.gene00439.t1	MTR_7g110810	67.213	61	19	1	33	92	204	264	1.43e-19	85.9

Showing 1 to 10 of 44 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00439.t1	AT4G36930	84.722	72	11	0	36	107	197	268	2.35e-35	128
MS.gene00439.t1	AT5G67110	75.000	84	21	0	29	112	86	169	1.65e-34	122
MS.gene00439.t1	AT1G09530	62.105	95	26	2	23	115	328	414	6.94e-29	113
MS.gene00439.t1	AT1G09530	62.105	95	26	2	23	115	328	414	6.94e-29	113
MS.gene00439.t1	AT1G09530	62.105	95	26	2	23	115	328	414	6.94e-29	113
MS.gene00439.t1	AT1G09530	62.105	95	26	2	23	115	328	414	6.94e-29	113
MS.gene00439.t1	AT1G09530	62.105	95	26	2	23	115	328	414	6.94e-29	113
MS.gene00439.t1	AT1G09530	62.105	95	26	2	23	115	328	414	6.94e-29	113
MS.gene00439.t1	AT2G20180	73.016	63	17	0	30	92	207	269	6.03e-26	103
MS.gene00439.t1	AT2G20180	73.016	63	17	0	30	92	207	269	6.03e-26	103

Showing 1 to 10 of 101 entries

Previous1 2 3 4 5…11Next

Find 41 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATTCATTGTTAGCAGG+CGG	0.584130	1.4:+3927512	None:intergenic
AACTGATTATGGATACAACA+AGG	0.695121	1.4:-3927252	MS.gene00439:CDS
AAGCTGCTTTAAATATTCAA+TGG	0.465998	1.4:+3928324	None:intergenic
AATATTCATTGTTAGCAGGC+GGG	0.525894	1.4:+3927513	None:intergenic
AATCTTGATGAGGGTAATAG+TGG	0.470391	1.4:-3927563	MS.gene00439:CDS
AATGAATGGAACAGAGAAGG+AGG	0.550832	1.4:-3928539	MS.gene00439:intron
AGAGGTTTGAAAACTTGATG+AGG	0.611385	1.4:+3927397	None:intergenic
AGATTGAACAACTCAGTCTG+AGG	0.648355	1.4:+3927581	None:intergenic
ATATTCATTGTTAGCAGGCG+GGG	0.547212	1.4:+3927514	None:intergenic
ATTAATTCTGCAGATGTTAA+TGG	0.295896	1.4:-3927666	MS.gene00439:intron

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATATTCATTGTTAGCAGG+CGG	+	chr1.4:3928462-3928481	None:intergenic	30.0%
AACTGATTATGGATACAACA+AGG	-	chr1.4:3928719-3928738	MS.gene00439:CDS	30.0%
AAGTAACAATTAGTCCATGA+TGG	+	chr1.4:3928274-3928293	None:intergenic	30.0%
ATTATGGATACAACAAGGAT+TGG	-	chr1.4:3928724-3928743	MS.gene00439:CDS	30.0%
CTAACAATGAATATTTCGCA+CGG	-	chr1.4:3928466-3928485	MS.gene00439:intron	30.0%
TAAAGCTTCAATGTTAGATG+AGG	-	chr1.4:3927624-3927643	MS.gene00439:CDS	30.0%
TAAGCGTAAATAAGTCAATC+CGG	+	chr1.4:3927832-3927851	None:intergenic	30.0%
TACATCACCTTGTTAGAATT+TGG	+	chr1.4:3927500-3927519	None:intergenic	30.0%
TCAAACATGAACCTTAATAG+AGG	+	chr1.4:3928595-3928614	None:intergenic	30.0%
TTGACAATTTGACATGGTTA+AGG	+	chr1.4:3927776-3927795	None:intergenic	30.0%

Showing 1 to 10 of 71 entries

Previous1 2 3 4 5…8Next

Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	3927219	3928774	3927219	ID=MS.gene00439
chr1.4	mRNA	3927219	3928774	3927219	ID=MS.gene00439.t1;Parent=MS.gene00439
chr1.4	exon	3928637	3928774	3928637	ID=MS.gene00439.t1.exon1;Parent=MS.gene00439.t1
chr1.4	CDS	3928637	3928774	3928637	ID=cds.MS.gene00439.t1;Parent=MS.gene00439.t1
chr1.4	exon	3928482	3928547	3928482	ID=MS.gene00439.t1.exon2;Parent=MS.gene00439.t1
chr1.4	CDS	3928482	3928547	3928482	ID=cds.MS.gene00439.t1;Parent=MS.gene00439.t1
chr1.4	exon	3928309	3928374	3928309	ID=MS.gene00439.t1.exon3;Parent=MS.gene00439.t1
chr1.4	CDS	3928309	3928374	3928309	ID=cds.MS.gene00439.t1;Parent=MS.gene00439.t1
chr1.4	exon	3927391	3927675	3927391	ID=MS.gene00439.t1.exon4;Parent=MS.gene00439.t1
chr1.4	CDS	3927391	3927675	3927391	ID=cds.MS.gene00439.t1;Parent=MS.gene00439.t1
chr1.4	exon	3927219	3927302	3927219	ID=MS.gene00439.t1.exon5;Parent=MS.gene00439.t1
chr1.4	CDS	3927219	3927302	3927219	ID=cds.MS.gene00439.t1;Parent=MS.gene00439.t1

Gene Sequence

>MS.gene00439

ATGACTTTTTTTATTCTTTTTTTTTTTTGTTTGAAGAATGATGAAGGTTCAGAGTTGCCATCATCAAAGGCTGCCCCACCACCACGTTCTTCTTCAAAGAGAAGCAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGGTTCAATTCAATATTTTTTACCCTTAAAAAGAAAGATTCTTTTTACTTTTTTTTGCCTTTCTGATTTTGAATTTTAATGAATGGAACAGAGAAGGAGGAGTAAGATTAATGAGAAATTGAAAGCTTTACAAAATTTAATTCCAAATTCTAACAAGGTGATGTATTTATGTATTATCTCTTTTTATACTTTATTTTAATTTATCTTACAAAATATTATTATTTTTCTTCTTATTCTTATTTTGTGTTTGTTTATTTTTAATAGACAGATAAAGCTTCAATGTTAGATGAGGCCATTGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAGTGAGTTTTCTTTCACTTAAGATGAACAATGAAACTCTAAAACATGTTAAATACTATTATGAATGGTTTTTTTGTGCAATACATTTGTCCTTAACCATGTCAAATTGTCAAGTGTTGTTGATGAAACAAAAGGTTAAGGTTTGTCCGGATTGACTTATTTACGCTTATTTACTGGTATAAGCACTTGTGAGCGTGTTTCAGAGAGCTTATAGTTAGAAACACCTTATAATATGTACATAAGATATTTTCAACTTATTTTGGTAAGCTCTTCAGGCTAGCTTAAGAAAACAACTTATAGCTTATATGAAAACGGTTTAAATTTATATCATCTTTTGTTATAGAAACAGTTTATATGTGAACACTTATATGTAAGTGTTTAACATAATCTCATAAACACTTAATCAAATCGTTTATCCGAAGTCCAAACTCGACCTATGACTCAATTTGGATCATCTTCTAGCTTACTGAGCTTCACAATTAGCTAAGGAAGAAATTAAATAAAAGAGCTTCTTGATTCTTTAAATATTTATTTTCTCTGTGAATGTTTCTTGAAAAATTTATCCAAAGTGACTATAGGTCCATTATTCCATCATGGACTAATTGTTACTTCAGTGTTTGTGATTAATTCTGCAGATGTTAATGGTGAGAAATGGTTATAGCTTGCATCCAATGTCGTTATCAGGAGGATCGCGGCCTACGATGTTTCCTCAGACTGAGTTGTTCAATCTTGATGAGGGTAATAGTGGATTTCACAATTCTAACAATGCAATTACCCCGCCTGCTAACAATGAATATTTCGCACGGCAAGCTTTTAGTTTTCCAGAACAATGCAGCATGTCAAATCAATCTGTAATCATACCCTCGGCGACAAATTTAGCTTCATTTGATACCTCATCAAGTTTTCAAACCTCTATTAAGGTTCATGTTTGATACAAAATAATTTTAATGAACAGTTACTTCATTTATTTGTTTATTGAACTTAACAACTCTTATTTCTGATGTGAAGGATGTTTTCAGCCACAACAACATGCCACAACTGATTATGGATACAACAAGGATTGGAAAAACTCCTTCTTCTGATGTGTCATAA

Protein sequence

>MS.gene00439.t1

MTFFILFFFCLKNDEGSELPSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMVRNGYSLHPMSLSGGSRPTMFPQTELFNLDEGNSGFHNSNNAITPPANNEYFARQAFSFPEQCSMSNQSVIIPSATNLASFDTSSSFQTSIKDVFSHNNMPQLIMDTTRIGKTPSSDVS