AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00443

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00443.t1 MTR_6g477900 31.481 162 92 7 4 154 6 159 2.99e-16 73.9
MS.gene00443.t1 MTR_3g096920 32.847 137 76 5 4 134 7 133 6.69e-15 70.9
MS.gene00443.t1 MTR_3g096920 32.847 137 76 5 4 134 7 133 8.86e-15 70.9
MS.gene00443.t1 MTR_8g094580 34.307 137 74 6 4 134 7 133 9.69e-15 70.5
MS.gene00443.t1 MTR_2g093810 32.867 143 83 4 4 140 14 149 1.17e-14 70.5
MS.gene00443.t1 MTR_2g086880 30.556 144 78 7 6 139 20 151 3.37e-14 69.7
MS.gene00443.t1 MTR_2g086880 30.714 140 75 7 6 135 20 147 5.32e-14 69.3
MS.gene00443.t1 MTR_1g008740 31.429 140 84 5 2 135 25 158 5.44e-14 68.9
MS.gene00443.t1 MTR_1g008740 31.429 140 84 5 2 135 11 144 6.34e-14 68.6
MS.gene00443.t1 MTR_7g100990 34.783 138 71 5 4 132 11 138 6.49e-14 68.6
MS.gene00443.t1 MTR_5g041940 34.043 141 71 7 1 132 1 128 7.05e-14 67.8
MS.gene00443.t1 MTR_2g080010 33.803 142 78 6 4 137 15 148 1.09e-13 68.2
MS.gene00443.t1 MTR_8g467490 32.117 137 80 4 2 132 12 141 1.56e-13 67.8
MS.gene00443.t1 MTR_8g093790 28.916 166 98 6 4 168 10 156 2.15e-13 65.5
MS.gene00443.t1 MTR_4g094302 28.682 129 83 4 4 132 11 130 3.60e-13 64.3
MS.gene00443.t1 MTR_4g098630 33.333 141 76 7 4 134 6 138 3.77e-13 66.2
MS.gene00443.t1 MTR_4g094302 28.682 129 83 4 4 132 11 130 4.71e-13 64.7
MS.gene00443.t1 MTR_2g064090 28.916 166 96 8 4 156 6 162 5.67e-13 65.9
MS.gene00443.t1 MTR_4g134460 36.090 133 71 6 6 132 56 180 6.05e-13 66.2
MS.gene00443.t1 MTR_6g011860 31.579 133 77 5 6 132 17 141 2.85e-12 64.3
MS.gene00443.t1 MTR_1g069805 29.221 154 94 6 4 150 10 155 3.11e-12 63.5
MS.gene00443.t1 MTR_1g097300 33.333 135 73 6 6 132 21 146 3.45e-12 63.9
MS.gene00443.t1 MTR_6g084430 29.341 167 99 8 2 158 3 160 3.72e-12 63.5
MS.gene00443.t1 MTR_2g079990 27.326 172 104 7 4 164 16 177 4.30e-12 63.5
MS.gene00443.t1 MTR_8g099750 30.405 148 82 6 4 142 14 149 5.06e-12 62.4
MS.gene00443.t1 MTR_3g116070 30.657 137 79 5 4 132 23 151 6.96e-12 62.8
MS.gene00443.t1 MTR_7g097090 29.870 154 93 6 4 150 10 155 8.04e-12 62.4
MS.gene00443.t1 MTR_8g023840 31.884 138 77 5 5 133 12 141 1.12e-11 62.4
MS.gene00443.t1 MTR_8g023900 29.213 178 102 7 4 166 188 356 1.47e-11 62.0
MS.gene00443.t1 MTR_8g023900 29.787 141 76 6 2 130 10 139 9.67e-11 59.7
MS.gene00443.t1 MTR_4g035590 30.719 153 91 7 5 149 9 154 2.33e-11 61.2
MS.gene00443.t1 MTR_3g096140 29.714 175 90 8 2 158 5 164 2.81e-11 60.8
MS.gene00443.t1 MTR_2g079990 32.353 136 75 6 4 132 16 141 3.45e-11 60.8
MS.gene00443.t1 MTR_1g090720 29.762 168 93 7 6 156 44 203 4.58e-11 60.8
MS.gene00443.t1 MTR_3g096140 31.176 170 90 8 2 156 5 162 4.80e-11 60.5
MS.gene00443.t1 MTR_4g075980 30.882 136 80 5 6 134 17 145 5.69e-11 60.1
MS.gene00443.t1 MTR_5g090970 31.126 151 89 6 2 145 16 158 6.14e-11 60.1
MS.gene00443.t1 MTR_8g059170 31.618 136 76 6 4 132 14 139 8.29e-11 59.7
MS.gene00443.t1 MTR_4g108760 26.404 178 110 6 4 169 17 185 8.74e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00443.t1 AT3G17730 30.303 165 96 7 4 157 6 162 3.87e-16 73.9
MS.gene00443.t1 AT3G10480 32.099 162 91 7 6 156 29 182 5.30e-16 75.1
MS.gene00443.t1 AT2G24430 33.333 159 86 7 2 149 14 163 7.77e-16 73.9
MS.gene00443.t1 AT2G24430 33.333 159 86 7 2 149 14 163 7.77e-16 73.9
MS.gene00443.t1 AT3G10480 31.288 163 92 7 6 156 29 183 5.44e-15 72.0
MS.gene00443.t1 AT3G10490 30.675 163 93 7 6 156 29 183 5.68e-15 70.5
MS.gene00443.t1 AT1G26870 35.115 131 72 4 6 130 18 141 6.68e-15 71.6
MS.gene00443.t1 AT1G77450 35.036 137 73 5 4 134 10 136 8.52e-15 70.5
MS.gene00443.t1 AT1G71930 31.387 137 82 4 4 134 9 139 1.65e-14 70.1
MS.gene00443.t1 AT1G71930 31.387 137 82 4 4 134 9 139 1.65e-14 70.1
MS.gene00443.t1 AT4G27410 29.651 172 94 8 4 158 14 175 1.88e-14 69.7
MS.gene00443.t1 AT3G10490 30.675 163 93 7 6 156 29 183 2.53e-14 70.1
MS.gene00443.t1 AT2G27300 28.676 136 87 4 6 137 16 145 3.05e-14 69.7
MS.gene00443.t1 AT5G64530 27.604 192 105 6 4 174 3 181 5.12e-14 67.0
MS.gene00443.t1 AT1G01720 35.036 137 73 6 4 134 7 133 6.27e-14 68.2
MS.gene00443.t1 AT1G54330 30.488 164 96 7 4 158 6 160 7.36e-14 68.2
MS.gene00443.t1 AT5G64530 32.061 131 76 4 4 134 3 120 1.17e-13 65.5
MS.gene00443.t1 AT5G46590 33.333 159 83 8 4 148 6 155 1.55e-13 67.4
MS.gene00443.t1 AT5G46590 34.286 140 74 7 4 134 6 136 2.45e-13 66.6
MS.gene00443.t1 AT3G44290 30.597 134 77 6 6 132 16 140 2.75e-13 65.9
MS.gene00443.t1 AT3G15500 28.070 171 104 7 4 164 14 175 3.52e-13 66.6
MS.gene00443.t1 AT5G39610 29.630 162 93 6 4 153 20 172 4.09e-13 65.9
MS.gene00443.t1 AT2G02450 33.553 152 85 7 6 149 53 196 4.27e-13 66.6
MS.gene00443.t1 AT3G44290 29.730 148 85 7 6 146 16 151 4.86e-13 66.2
MS.gene00443.t1 AT2G02450 34.211 152 84 7 6 149 53 196 5.31e-13 66.2
MS.gene00443.t1 AT5G66300 26.347 167 108 5 4 161 12 172 6.10e-13 65.5
MS.gene00443.t1 AT4G10350 32.903 155 88 7 5 149 10 158 8.12e-13 65.5
MS.gene00443.t1 AT1G52890 27.545 167 100 7 4 159 14 170 1.22e-12 65.1
MS.gene00443.t1 AT3G49530 25.904 166 103 7 1 154 10 167 1.72e-12 64.7
MS.gene00443.t1 AT3G49530 25.904 166 103 7 1 154 10 167 2.23e-12 64.7
MS.gene00443.t1 AT3G29035 30.864 162 91 7 4 153 24 176 3.14e-12 63.9
MS.gene00443.t1 AT5G61430 28.395 162 95 6 4 153 16 168 3.21e-12 63.9
MS.gene00443.t1 AT3G04060 27.513 189 110 8 4 174 20 199 4.73e-12 63.5
MS.gene00443.t1 AT5G07680 28.834 163 93 7 4 153 17 169 5.51e-12 63.2
MS.gene00443.t1 AT5G07680 28.834 163 93 7 4 153 3 155 6.64e-12 62.8
MS.gene00443.t1 AT5G18270 28.750 160 92 7 4 150 21 171 1.10e-11 62.4
MS.gene00443.t1 AT5G04395 29.605 152 86 6 4 138 28 175 1.25e-11 60.8
MS.gene00443.t1 AT5G18270 28.125 160 93 7 4 150 21 171 3.59e-11 60.8
MS.gene00443.t1 AT3G12910 30.435 138 75 6 6 132 23 150 6.56e-11 60.1
MS.gene00443.t1 AT1G33280 30.882 136 82 4 5 134 9 138 8.28e-11 59.7
MS.gene00443.t1 AT4G28530 26.506 166 99 4 4 150 10 171 9.38e-11 59.7

Find 37 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGCTTAAGCATGCACTTC+TGG 0.248003 1.3:+4274269 MS.gene00443:CDS
CAATGGTTCTGAGCTAATTA+AGG 0.256935 1.3:+4272856 MS.gene00443:CDS
GGTACTGTAAGACAGGATTT+TGG 0.279481 1.3:+4272990 MS.gene00443:CDS
GGAGCTGATAACGTGGTTCT+AGG 0.360842 1.3:+4273046 MS.gene00443:CDS
GAAGAGATTCAGAATTTCAA+TGG 0.424440 1.3:+4272839 MS.gene00443:CDS
GGAGTAAGACGCAATTCAAA+TGG 0.431789 1.3:-4272902 None:intergenic
GCAATTCAAATGGGTCATAC+TGG 0.459319 1.3:-4272892 None:intergenic
CAGAGGAGGTACTGTAAGAC+AGG 0.478625 1.3:+4272983 MS.gene00443:CDS
CCTCCTCTGCTCATCAACTT+TGG 0.480636 1.3:-4272969 None:intergenic
GTGAAGCAATAAAATTCCCT+TGG 0.488088 1.3:-4272944 None:intergenic
CAAATGGGTCATACTGGTAC+AGG 0.492656 1.3:-4272886 None:intergenic
CCTTGGGTGACGGAAGGAAA+AGG 0.509656 1.3:-4272927 None:intergenic
GAAGGGACGAAGCCAACGCC+AGG 0.516186 1.3:-4272773 None:intergenic
GAATTGTTTCCACCTGGCGT+TGG 0.519445 1.3:+4272761 MS.gene00443:CDS
AGTGCATGCTTAAGCTGCTC+CGG 0.526169 1.3:-4274264 None:intergenic
AATAAAATTCCCTTGGGTGA+CGG 0.537471 1.3:-4272937 None:intergenic
CACTCTTGCTAACAAGCCTC+AGG 0.544263 1.3:+4273147 MS.gene00443:CDS
TGGACGCTGTCAAAACCAGC+TGG 0.550147 1.3:+4273110 MS.gene00443:CDS
TGAAGCAATAAAATTCCCTT+GGG 0.552712 1.3:-4272943 None:intergenic
CCACATGGAAGCTATGACAC+CGG 0.554580 1.3:+4274245 MS.gene00443:CDS
GAGTAAGACGCAATTCAAAT+GGG 0.556312 1.3:-4272901 None:intergenic
GCTGTTCGAGACATTACCGT+TGG 0.568138 1.3:+4273025 MS.gene00443:CDS
GCAATGGAATTGTTTCCACC+TGG 0.585685 1.3:+4272755 None:intergenic
AAATTCCCTTGGGTGACGGA+AGG 0.596649 1.3:-4272933 None:intergenic
GTACTCGTACATAGTCCAGC+TGG 0.603542 1.3:-4273125 None:intergenic
CTAACAAGGAGCTCATCAGA+AGG 0.607644 1.3:-4272791 None:intergenic
TAACAAGGAGCTCATCAGAA+GGG 0.608778 1.3:-4272790 None:intergenic
CCAAAGTTGATGAGCAGAGG+AGG 0.609229 1.3:+4272969 MS.gene00443:CDS
TGACTGTGTTGTCTTCCACA+TGG 0.610846 1.3:+4274230 MS.gene00443:CDS
CTATTTAGGAAATTCACCGA+TGG 0.613156 1.3:+4273090 MS.gene00443:CDS
TGGCAAGGTAGTAGCTAACA+AGG 0.615826 1.3:-4272805 None:intergenic
GGGACGAAGCCAACGCCAGG+TGG 0.622803 1.3:-4272770 None:intergenic
CTGCCAAAGTTGATGAGCAG+AGG 0.624165 1.3:+4272966 MS.gene00443:CDS
AACCACGTTATCAGCTCCAA+CGG 0.626095 1.3:-4273041 None:intergenic
GGGTGACGGAAGGAAAAGGA+TGG 0.637555 1.3:-4272923 None:intergenic
TACCGTTGGAGCTGATAACG+TGG 0.651576 1.3:+4273039 MS.gene00443:CDS
CCGGTGTCATAGCTTCCATG+TGG 0.695251 1.3:-4274245 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATTTAAATAAAAAA+AGG - chr1.3:4274051-4274070 None:intergenic 0.0%
!! GATAAAATTTATCAAAACTT+TGG + chr1.3:4273735-4273754 MS.gene00443:intron 15.0%
!! TCAATGATTAATTAATGTAT+TGG + chr1.3:4273215-4273234 MS.gene00443:intron 15.0%
!! TTATATATAAATAATTGTGC+AGG + chr1.3:4273254-4273273 MS.gene00443:intron 15.0%
!!! TTTTTGAAGTTTTAAAGAAT+CGG - chr1.3:4273886-4273905 None:intergenic 15.0%
!! AATATAAAGAGAGAACAAAA+TGG - chr1.3:4273510-4273529 None:intergenic 20.0%
!! TGATGAAATAAAGAACAAAA+GGG - chr1.3:4273198-4273217 None:intergenic 20.0%
!! TTGATGAAATAAAGAACAAA+AGG - chr1.3:4273199-4273218 None:intergenic 20.0%
!!! CAACTTTTCATTTCATTTTA+TGG + chr1.3:4274126-4274145 MS.gene00443:intron 20.0%
! ATATGTACTTGACTGATATT+GGG + chr1.3:4273591-4273610 MS.gene00443:intron 25.0%
! TATTTATGATGAACTTGTCA+TGG - chr1.3:4274075-4274094 None:intergenic 25.0%
! TTGGCTTCTTACAAAAAATT+CGG + chr1.3:4273813-4273832 MS.gene00443:intron 25.0%
!! ATTTTATGGTAGAGACAATA+AGG + chr1.3:4274140-4274159 MS.gene00443:intron 25.0%
!! TCTCTCTTCTTTTTCTATTT+AGG + chr1.3:4273076-4273095 MS.gene00443:CDS 25.0%
!!! AATCTCTTCATTGTTTTTGT+TGG - chr1.3:4272828-4272847 None:intergenic 25.0%
!!! GTTTTGTTTTGATGTTTATC+AGG + chr1.3:4274188-4274207 MS.gene00443:intron 25.0%
AAAATGTTGCGATTGAATGT+GGG + chr1.3:4273627-4273646 MS.gene00443:intron 30.0%
ACATGTTACAATCACATGAA+TGG - chr1.3:4273923-4273942 None:intergenic 30.0%
CATATGTACTTGACTGATAT+TGG + chr1.3:4273590-4273609 MS.gene00443:intron 30.0%
GAAATAAAGAACAAAAGGGA+AGG - chr1.3:4273194-4273213 None:intergenic 30.0%
GAAGAGATTCAGAATTTCAA+TGG + chr1.3:4272839-4272858 MS.gene00443:CDS 30.0%
TAAAATGTTGCGATTGAATG+TGG + chr1.3:4273626-4273645 MS.gene00443:intron 30.0%
TGAAGCAATAAAATTCCCTT+GGG - chr1.3:4272946-4272965 None:intergenic 30.0%
TGGCTTCTTACAAAAAATTC+GGG + chr1.3:4273814-4273833 MS.gene00443:intron 30.0%
! CTCATTAGTGTCAATTTTGT+GGG + chr1.3:4273785-4273804 MS.gene00443:intron 30.0%
! TATGGCCAATTTTTAAATCG+TGG + chr1.3:4273677-4273696 MS.gene00443:intron 30.0%
! TCTCATTAGTGTCAATTTTG+TGG + chr1.3:4273784-4273803 MS.gene00443:intron 30.0%
AACACACGACAAACAACAAA+AGG - chr1.3:4273282-4273301 None:intergenic 35.0%
AATAAAATTCCCTTGGGTGA+CGG - chr1.3:4272940-4272959 None:intergenic 35.0%
AGCGACCACGATTTAAAAAT+TGG - chr1.3:4273685-4273704 None:intergenic 35.0%
ATGGATCTAAAAGGTGAGTT+CGG + chr1.3:4273318-4273337 MS.gene00443:intron 35.0%
CATCAAAATCAGTGATGTTG+TGG - chr1.3:4273653-4273672 None:intergenic 35.0%
CTATTTAGGAAATTCACCGA+TGG + chr1.3:4273090-4273109 MS.gene00443:CDS 35.0%
GAGTAAGACGCAATTCAAAT+GGG - chr1.3:4272904-4272923 None:intergenic 35.0%
GTGAAGCAATAAAATTCCCT+TGG - chr1.3:4272947-4272966 None:intergenic 35.0%
! AATTTTTAAATCGTGGTCGC+TGG + chr1.3:4273684-4273703 MS.gene00443:intron 35.0%
! ACAGGATTTTGGATGCAAAA+GGG + chr1.3:4273001-4273020 MS.gene00443:CDS 35.0%
! GTCAATTTTGTGGGATAACT+TGG + chr1.3:4273794-4273813 MS.gene00443:intron 35.0%
!! CAATGGTTCTGAGCTAATTA+AGG + chr1.3:4272856-4272875 MS.gene00443:CDS 35.0%
!!! CACTGATTTTGATGTCTGTA+TGG + chr1.3:4273659-4273678 MS.gene00443:intron 35.0%
!!! CTTCATTGTTTTTGTTGGCA+AGG - chr1.3:4272823-4272842 None:intergenic 35.0%
AAGCCTCAGGTATGACATTT+GGG + chr1.3:4273160-4273179 MS.gene00443:intron 40.0%
GCAATTCAAATGGGTCATAC+TGG - chr1.3:4272895-4272914 None:intergenic 40.0%
GGAGTAAGACGCAATTCAAA+TGG - chr1.3:4272905-4272924 None:intergenic 40.0%
TAACAAGGAGCTCATCAGAA+GGG - chr1.3:4272793-4272812 None:intergenic 40.0%
TTTCCCAAATGTCATACCTG+AGG - chr1.3:4273166-4273185 None:intergenic 40.0%
! GACAGGATTTTGGATGCAAA+AGG + chr1.3:4273000-4273019 MS.gene00443:CDS 40.0%
! GGTACTGTAAGACAGGATTT+TGG + chr1.3:4272990-4273009 MS.gene00443:CDS 40.0%
AACCACGTTATCAGCTCCAA+CGG - chr1.3:4273044-4273063 None:intergenic 45.0%
AGGACGCGATTTGAAGAATC+TGG - chr1.3:4274031-4274050 None:intergenic 45.0%
AGGTGATGCATCGTATTTGC+AGG + chr1.3:4273473-4273492 MS.gene00443:intron 45.0%
ATGTCGCTCAGAAACCTATG+GGG + chr1.3:4273388-4273407 MS.gene00443:intron 45.0%
CAAATGGGTCATACTGGTAC+AGG - chr1.3:4272889-4272908 None:intergenic 45.0%
CAAGCCTCAGGTATGACATT+TGG + chr1.3:4273159-4273178 MS.gene00443:intron 45.0%
CTAACAAGGAGCTCATCAGA+AGG - chr1.3:4272794-4272813 None:intergenic 45.0%
GATGTCGCTCAGAAACCTAT+GGG + chr1.3:4273387-4273406 MS.gene00443:intron 45.0%
TGACTGTGTTGTCTTCCACA+TGG + chr1.3:4274230-4274249 MS.gene00443:CDS 45.0%
TGATGTCGCTCAGAAACCTA+TGG + chr1.3:4273386-4273405 MS.gene00443:intron 45.0%
TGGCAAGGTAGTAGCTAACA+AGG - chr1.3:4272808-4272827 None:intergenic 45.0%
! CTTTTAGATCCATCCCTGGT+GGG - chr1.3:4273311-4273330 None:intergenic 45.0%
! TCACCTTTTAGATCCATCCC+TGG - chr1.3:4273315-4273334 None:intergenic 45.0%
AGTGCATGCTTAAGCTGCTC+CGG - chr1.3:4274267-4274286 None:intergenic 50.0%
CACTCTTGCTAACAAGCCTC+AGG + chr1.3:4273147-4273166 MS.gene00443:CDS 50.0%
CCACATGGAAGCTATGACAC+CGG + chr1.3:4274245-4274264 MS.gene00443:CDS 50.0%
CCACCAGGGATGGATCTAAA+AGG + chr1.3:4273309-4273328 MS.gene00443:intron 50.0%
CCTCCTCTGCTCATCAACTT+TGG - chr1.3:4272972-4272991 None:intergenic 50.0%
GAATTGTTTCCACCTGGCGT+TGG + chr1.3:4272761-4272780 MS.gene00443:CDS 50.0%
GCAGCTTAAGCATGCACTTC+TGG + chr1.3:4274269-4274288 MS.gene00443:CDS 50.0%
GCCTTCTTCAACATCCGTCA+AGG - chr1.3:4273346-4273365 None:intergenic 50.0%
GCTGTTCGAGACATTACCGT+TGG + chr1.3:4273025-4273044 MS.gene00443:CDS 50.0%
GTACTCGTACATAGTCCAGC+TGG - chr1.3:4273128-4273147 None:intergenic 50.0%
TGTCGCTCAGAAACCTATGG+GGG + chr1.3:4273389-4273408 MS.gene00443:intron 50.0%
! CCTTTTAGATCCATCCCTGG+TGG - chr1.3:4273312-4273331 None:intergenic 50.0%
! CTTTTCCTTCCGTCACCCAA+GGG + chr1.3:4272928-4272947 MS.gene00443:CDS 50.0%
! GCCTTGACGGATGTTGAAGA+AGG + chr1.3:4273342-4273361 MS.gene00443:intron 50.0%
! GGAGCTGATAACGTGGTTCT+AGG + chr1.3:4273046-4273065 MS.gene00443:CDS 50.0%
! TACCGTTGGAGCTGATAACG+TGG + chr1.3:4273039-4273058 MS.gene00443:CDS 50.0%
!! AAATTCCCTTGGGTGACGGA+AGG - chr1.3:4272936-4272955 None:intergenic 50.0%
!! CAGAGGAGGTACTGTAAGAC+AGG + chr1.3:4272983-4273002 MS.gene00443:CDS 50.0%
!! CCAAAGTTGATGAGCAGAGG+AGG + chr1.3:4272969-4272988 MS.gene00443:CDS 50.0%
!! CTGCCAAAGTTGATGAGCAG+AGG + chr1.3:4272966-4272985 MS.gene00443:CDS 50.0%
!!! CTGGTTTTGACAGCGTCCAT+CGG - chr1.3:4273109-4273128 None:intergenic 50.0%
AGGTGAGTTCGGAGCCTTGA+CGG + chr1.3:4273329-4273348 MS.gene00443:intron 55.0%
GTGTGTTTGACTGCCCACCA+GGG + chr1.3:4273295-4273314 MS.gene00443:intron 55.0%
GTTGAAGAAGGCGATGCTGC+TGG + chr1.3:4273354-4273373 MS.gene00443:intron 55.0%
TGGACGCTGTCAAAACCAGC+TGG + chr1.3:4273110-4273129 MS.gene00443:CDS 55.0%
! CCTTTTCCTTCCGTCACCCA+AGG + chr1.3:4272927-4272946 MS.gene00443:CDS 55.0%
!! CCGGTGTCATAGCTTCCATG+TGG - chr1.3:4274248-4274267 None:intergenic 55.0%
!! CCTTGGGTGACGGAAGGAAA+AGG - chr1.3:4272930-4272949 None:intergenic 55.0%
!! GGGTGACGGAAGGAAAAGGA+TGG - chr1.3:4272926-4272945 None:intergenic 55.0%
CGTGTGTTTGACTGCCCACC+AGG + chr1.3:4273294-4273313 MS.gene00443:intron 60.0%
GCTCAGAAACCTATGGGGGC+TGG + chr1.3:4273393-4273412 MS.gene00443:intron 60.0%
GTTTGACTGCCCACCAGGGA+TGG + chr1.3:4273299-4273318 MS.gene00443:intron 60.0%
!! GCTGGTTCTGCTGCTGATGC+TGG + chr1.3:4273435-4273454 MS.gene00443:intron 60.0%
GAAGGGACGAAGCCAACGCC+AGG - chr1.3:4272776-4272795 None:intergenic 65.0%
GCACTAGCACCAGCCCCCAT+AGG - chr1.3:4273405-4273424 None:intergenic 65.0%
! GCTAGTGCTGCTGCTGGTGC+TGG + chr1.3:4273417-4273436 MS.gene00443:intron 65.0%
! GCTGGTCGTGCTGCTGAGCA+AGG + chr1.3:4273453-4273472 MS.gene00443:intron 65.0%
! GCTGGTGCTAGTGCTGCTGC+TGG + chr1.3:4273411-4273430 MS.gene00443:intron 65.0%
GGGACGAAGCCAACGCCAGG+TGG - chr1.3:4272773-4272792 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 4272758 4274326 4272758 ID=MS.gene00443
chr1.3 mRNA 4272758 4274326 4272758 ID=MS.gene00443.t1;Parent=MS.gene00443
chr1.3 exon 4272758 4273168 4272758 ID=MS.gene00443.t1.exon1;Parent=MS.gene00443.t1
chr1.3 CDS 4272758 4273168 4272758 ID=cds.MS.gene00443.t1;Parent=MS.gene00443.t1
chr1.3 exon 4274210 4274326 4274210 ID=MS.gene00443.t1.exon2;Parent=MS.gene00443.t1
chr1.3 CDS 4274210 4274326 4274210 ID=cds.MS.gene00443.t1;Parent=MS.gene00443.t1
Gene Sequence

>MS.gene00443

ATGGAATTGTTTCCACCTGGCGTTGGCTTCGTCCCTTCTGATGAGCTCCTTGTTAGCTACTACCTTGCCAACAAAAACAATGAAGAGATTCAGAATTTCAATGGTTCTGAGCTAATTAAGGAGCTGAACCTGTACCAGTATGACCCATTTGAATTGCGTCTTACTCCATCCTTTTCCTTCCGTCACCCAAGGGAATTTTATTGCTTCACTGCCAAAGTTGATGAGCAGAGGAGGTACTGTAAGACAGGATTTTGGATGCAAAAGGGAGCTGTTCGAGACATTACCGTTGGAGCTGATAACGTGGTTCTAGGAAAGAAGTCTCTCTTCTTTTTCTATTTAGGAAATTCACCGATGGACGCTGTCAAAACCAGCTGGACTATGTACGAGTACACTCTTGCTAACAAGCCTCAGGTATGACATTTGGGAAAACTATCCTTCCCTTTTGTTCTTTATTTCATCAATGATTAATTAATGTATTGGTAACTACTAACTATTTTTATATATAAATAATTGTGCAGGCTCCTTTTGTTGTTTGTCGTGTGTTTGACTGCCCACCAGGGATGGATCTAAAAGGTGAGTTCGGAGCCTTGACGGATGTTGAAGAAGGCGATGCTGCTGGCGATGACTCTGATGTCGCTCAGAAACCTATGGGGGCTGGTGCTAGTGCTGCTGCTGGTGCTGGTTCTGCTGCTGATGCTGGTCGTGCTGCTGAGCAAGGTGATGCATCGTATTTGCAGGTAAAATATATTCCATTTTGTTCTCTCTTTATATTTTGTTGTCAGTTAGAATTTTAGAATAGTTGAATGTGTCATAAATCATAATTTTTTTGTTGCATATGTACTTGACTGATATTGGGCATAAGTTTTAATAAAATGTTGCGATTGAATGTGGGCCACAACATCACTGATTTTGATGTCTGTATGGCCAATTTTTAAATCGTGGTCGCTGGCTATTGCATCACAAACATTGACAATGTAGATAAAATTTATCAAAACTTTGGTTTAATTTCAAGTTTTCATATTCGATTCTCATTAGTGTCAATTTTGTGGGATAACTTGGCTTCTTACAAAAAATTCGGGTTATTGTTAAGAGTCAATCAATTAACGTTGTTGATGTTCTTTGCAACCGATTCTTTAAAACTTCAAAAAATTTACAACTCAATCCATTCATGTGATTGTAACATGTCAAAATGTCAACTTGTGTGTAGAAATTAAATGATAGTAATTCTCAAAACATATAGCAATTGATTAAGTTAACGTAGCTATTCTTACCAGATTCTTCAAATCGCGTCCTTTTTTTATTTAAATTTTTTTGCCATGACAAGTTCATCATAAATATTGTTGTTGTTGTCGTCACTTTTTGACAATGCAACTTTTCATTTCATTTTATGGTAGAGACAATAAGGTATTGTTGAAATATTGAATTGCTTTGTTTTGTTTTGATGTTTATCAGGCGAGTTATGCTGCATTTCTTGACTGTGTTGTCTTCCACATGGAAGCTATGACACCGGAGCAGCTTAAGCATGCACTTCTGGACGAAGATTTTCTTGAACTCGCTGATTTTGTATAA
Protein sequence

>MS.gene00443.t1

MELFPPGVGFVPSDELLVSYYLANKNNEEIQNFNGSELIKELNLYQYDPFELRLTPSFSFRHPREFYCFTAKVDEQRRYCKTGFWMQKGAVRDITVGADNVVLGKKSLFFFYLGNSPMDAVKTSWTMYEYTLANKPQASYAAFLDCVVFHMEAMTPEQLKHALLDEDFLELADFV