AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00445

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00445.t1 MTR_1g047060 54.000 100 37 3 110 207 1 93 9.76e-27 99.8
MS.gene00445.t1 MTR_5g012080 32.704 159 82 8 4 146 7 156 3.28e-16 77.4
MS.gene00445.t1 MTR_1g096430 32.484 157 89 6 4 149 7 157 8.59e-16 75.9
MS.gene00445.t1 MTR_2g080010 33.544 158 93 5 4 155 15 166 1.59e-15 75.5
MS.gene00445.t1 MTR_4g094302 29.747 158 87 6 4 147 11 158 4.26e-15 71.6
MS.gene00445.t1 MTR_4g089135 35.075 134 76 4 4 132 15 142 2.61e-14 71.6
MS.gene00445.t1 MTR_4g094302 32.558 129 78 4 4 132 11 130 3.34e-14 68.6
MS.gene00445.t1 MTR_1g008740 32.484 157 88 6 2 146 25 175 6.58e-14 70.9
MS.gene00445.t1 MTR_7g100990 32.075 159 84 6 4 145 11 162 7.11e-14 70.5
MS.gene00445.t1 MTR_1g008740 32.484 157 88 6 2 146 11 161 7.24e-14 70.5
MS.gene00445.t1 MTR_2g064090 31.646 158 85 8 4 146 6 155 7.89e-14 70.5
MS.gene00445.t1 MTR_7g105170 31.138 167 89 8 1 146 1 162 1.22e-13 68.9
MS.gene00445.t1 MTR_2g093810 30.380 158 88 5 4 145 14 165 1.76e-13 69.3
MS.gene00445.t1 MTR_7g097090 33.333 153 84 7 4 146 10 154 3.73e-13 68.2
MS.gene00445.t1 MTR_8g076110 31.818 154 88 6 4 146 6 153 4.26e-13 68.2
MS.gene00445.t1 MTR_3g096140 28.351 194 114 8 2 179 5 189 4.51e-13 67.8
MS.gene00445.t1 MTR_4g035590 30.460 174 99 9 4 164 8 172 5.28e-13 68.2
MS.gene00445.t1 MTR_3g093040 31.481 162 79 10 4 146 108 256 7.35e-13 67.4
MS.gene00445.t1 MTR_8g093790 28.758 153 75 6 4 147 10 137 7.80e-13 65.5
MS.gene00445.t1 MTR_5g040420 27.711 166 92 6 2 146 12 170 8.03e-13 67.8
MS.gene00445.t1 MTR_8g023900 29.677 155 88 7 4 145 12 158 1.16e-12 67.4
MS.gene00445.t1 MTR_8g023900 29.545 176 99 8 7 168 196 360 2.90e-12 66.2
MS.gene00445.t1 MTR_3g096140 27.835 194 115 7 2 179 5 189 1.38e-12 67.0
MS.gene00445.t1 MTR_8g059170 31.210 157 86 6 4 146 14 162 1.57e-12 66.6
MS.gene00445.t1 MTR_8g467490 27.711 166 93 6 2 146 12 171 2.37e-12 66.2
MS.gene00445.t1 MTR_2g079990 30.128 156 87 6 4 146 16 162 6.45e-12 64.7
MS.gene00445.t1 MTR_3g093050 32.099 162 78 10 4 146 22 170 6.61e-12 65.5
MS.gene00445.t1 MTR_3g093050 32.099 162 78 10 4 146 22 170 1.11e-11 64.7
MS.gene00445.t1 MTR_6g012670 28.144 167 97 7 4 154 20 179 1.56e-11 63.5
MS.gene00445.t1 MTR_3g096400 28.743 167 83 6 4 147 7 160 4.51e-11 60.8
MS.gene00445.t1 MTR_1g090720 31.902 163 83 7 4 146 42 196 4.86e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00445.t1 AT2G24430 35.669 157 82 6 2 146 14 163 7.54e-17 79.0
MS.gene00445.t1 AT2G24430 35.669 157 82 6 2 146 14 163 7.54e-17 79.0
MS.gene00445.t1 AT2G27300 28.230 209 124 8 4 197 14 211 2.18e-16 77.8
MS.gene00445.t1 AT4G36160 32.278 158 90 6 4 150 14 165 4.35e-16 77.0
MS.gene00445.t1 AT4G36160 32.278 158 90 6 4 150 10 161 4.83e-16 77.0
MS.gene00445.t1 AT4G36160 32.278 158 90 6 4 150 10 161 4.83e-16 77.0
MS.gene00445.t1 AT1G71930 31.210 157 91 5 4 149 9 159 4.84e-15 73.9
MS.gene00445.t1 AT1G71930 31.210 157 91 5 4 149 9 159 4.84e-15 73.9
MS.gene00445.t1 AT5G64530 29.319 191 99 6 4 171 3 180 7.55e-15 71.2
MS.gene00445.t1 AT5G39610 32.903 155 86 6 4 146 20 168 1.06e-14 72.4
MS.gene00445.t1 AT1G76420 32.075 159 83 6 4 147 22 170 1.08e-14 72.8
MS.gene00445.t1 AT1G01720 31.056 161 84 6 4 147 7 157 1.29e-14 72.0
MS.gene00445.t1 AT1G26870 31.169 154 93 4 2 149 14 160 1.74e-14 72.8
MS.gene00445.t1 AT5G22290 27.835 194 109 8 6 179 23 205 2.06e-14 72.0
MS.gene00445.t1 AT4G17980 31.646 158 86 6 4 145 6 157 2.81e-14 70.9
MS.gene00445.t1 AT3G44290 27.517 149 88 6 6 145 16 153 4.69e-14 69.7
MS.gene00445.t1 AT4G17980 31.646 158 86 6 4 145 6 157 4.94e-14 70.5
MS.gene00445.t1 AT3G15500 32.484 157 82 8 4 146 14 160 9.44e-14 70.1
MS.gene00445.t1 AT3G44290 27.517 149 88 6 6 145 16 153 1.18e-13 69.7
MS.gene00445.t1 AT5G64530 33.588 131 74 4 4 134 3 120 1.64e-13 66.6
MS.gene00445.t1 AT4G35580 30.675 163 91 8 1 149 6 160 1.82e-13 70.1
MS.gene00445.t1 AT4G35580 30.675 163 91 8 1 149 6 160 1.83e-13 70.1
MS.gene00445.t1 AT4G35580 30.675 163 91 8 1 149 6 160 1.85e-13 69.7
MS.gene00445.t1 AT3G29035 30.968 155 89 5 4 146 24 172 2.22e-13 68.9
MS.gene00445.t1 AT4G10350 30.387 181 94 10 4 168 9 173 2.38e-13 68.9
MS.gene00445.t1 AT5G17260 31.013 158 86 7 4 146 6 155 2.79e-13 69.3
MS.gene00445.t1 AT1G52890 32.278 158 81 8 4 146 14 160 3.10e-13 68.6
MS.gene00445.t1 AT5G63790 32.099 162 82 7 4 147 50 201 4.80e-13 67.8
MS.gene00445.t1 AT1G54330 31.373 153 88 6 4 146 6 151 5.19e-13 67.8
MS.gene00445.t1 AT5G63790 32.099 162 82 7 4 147 60 211 5.47e-13 67.8
MS.gene00445.t1 AT4G27410 30.128 156 87 6 4 146 14 160 2.12e-12 65.9
MS.gene00445.t1 AT1G32510 29.268 164 88 7 3 145 5 161 4.47e-12 65.1
MS.gene00445.t1 AT3G15510 31.579 152 92 5 10 155 23 168 5.03e-12 65.5
MS.gene00445.t1 AT3G03200 31.013 158 86 7 4 146 6 155 6.07e-12 65.5
MS.gene00445.t1 AT5G46590 30.625 160 83 8 4 145 6 155 6.39e-12 64.7
MS.gene00445.t1 AT5G13180 28.947 152 92 5 4 146 14 158 6.59e-12 63.9
MS.gene00445.t1 AT2G43000 28.289 152 92 5 6 146 20 165 9.53e-12 63.9

Find 52 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATTATGCTTTCAATTA+TGG 0.116873 1.3:-4297816 MS.gene00445:CDS
CAATGGTTCTGACCTGATTC+AGG 0.237830 1.3:-4299003 MS.gene00445:CDS
GGCACTGTAAGACGGGATTT+TGG 0.238007 1.3:-4298869 MS.gene00445:CDS
CCTTGGGTGACGGAAGAAAA+AGG 0.350861 1.3:+4298932 None:intergenic
TTGGATCTGGATGCTGAGTT+TGG 0.378607 1.3:-4298540 MS.gene00445:CDS
ATTGAAAGCATAATTTGCTC+AGG 0.423054 1.3:+4297821 None:intergenic
ACAGGTTCAGCTCCTGAATC+AGG 0.430846 1.3:+4298991 None:intergenic
ACTCCATTCGTCTTGTCAGC+AGG 0.440817 1.3:+4298480 None:intergenic
CCTCCTCTGCTCATCAACTT+TGG 0.455099 1.3:+4298890 None:intergenic
GAAGAGGCTCAGAATTTCAA+TGG 0.469135 1.3:-4299020 MS.gene00445:CDS
GCAATTCAAACGGATCATAC+TGG 0.470273 1.3:+4298967 None:intergenic
GTTGATGAAGGCGATGCTGC+TGG 0.479728 1.3:-4298510 MS.gene00445:CDS
GTGAAGCAGCAAAATTCCCT+TGG 0.487125 1.3:+4298915 None:intergenic
CTGCCCACCAGAGTTGGATC+TGG 0.490020 1.3:-4298553 MS.gene00445:CDS
TGGAGTTACTCAGAAACCTA+TGG 0.493323 1.3:-4298463 MS.gene00445:CDS
CAGAGGAGGCACTGTAAGAC+GGG 0.502638 1.3:-4298876 MS.gene00445:CDS
GGAGTAAAACGCAATTCAAA+CGG 0.503611 1.3:+4298957 None:intergenic
AGCAAAATTCCCTTGGGTGA+CGG 0.508819 1.3:+4298922 None:intergenic
ACTAGTGCTGCTGCTGAGCA+AGG 0.517825 1.3:-4298420 MS.gene00445:CDS
CAAACGGATCATACTGGTAC+AGG 0.523566 1.3:+4298973 None:intergenic
TTTGGAGCTATAGTTGATGA+AGG 0.531036 1.3:-4298522 MS.gene00445:CDS
AGAATGCCATCAAAACTAGC+TGG 0.534697 1.3:-4298749 MS.gene00445:CDS
GCTGTTCGAGACATTACTGT+TGG 0.540803 1.3:-4298834 MS.gene00445:CDS
CACACTTGCTAACAATCCTC+AGG 0.550460 1.3:-4298712 MS.gene00445:intron
TTGAAAGCATAATTTGCTCA+GGG 0.552658 1.3:+4297822 None:intergenic
CTCCATTCGTCTTGTCAGCA+GGG 0.558272 1.3:+4298481 None:intergenic
GGAGTTACTCAGAAACCTAT+GGG 0.559803 1.3:-4298462 MS.gene00445:CDS
TGAAGCAGCAAAATTCCCTT+GGG 0.560910 1.3:+4298916 None:intergenic
TGGCAAGGTAGTGGCTAACA+AGG 0.563537 1.3:+4299054 None:intergenic
AAAACAAATAAATTTATACA+AGG 0.565586 1.3:+4297768 None:intergenic
GCATCCAGATCCAACTCTGG+TGG 0.565861 1.3:+4298549 None:intergenic
GTTTGACTGCCCACCAGAGT+TGG 0.567918 1.3:-4298559 MS.gene00445:CDS
CTAACAAGGAGCTCATCAGA+AGG 0.575725 1.3:+4299068 None:intergenic
TGACTATGCTGTCTTGCACA+TGG 0.580894 1.3:-4297855 MS.gene00445:CDS
CCAAAGTTGATGAGCAGAGG+AGG 0.581145 1.3:-4298890 MS.gene00445:CDS
TAACAAGGAGCTCATCAGAA+GGG 0.587558 1.3:+4299069 None:intergenic
AGTGCTGCTGCTGAGCAAGG+CGG 0.590822 1.3:-4298417 MS.gene00445:CDS
GCAGAGGAGGCACTGTAAGA+CGG 0.596785 1.3:-4298877 MS.gene00445:CDS
GACCCTGCTGACAAGACGAA+TGG 0.596809 1.3:-4298483 MS.gene00445:CDS
TCAGCATCCAGATCCAACTC+TGG 0.601777 1.3:+4298546 None:intergenic
GCAATGGAATTGCTTCCACC+TGG 0.606391 1.3:-4299104 MS.gene00445:CDS
AACAAGGAGCTCATCAGAAG+GGG 0.621007 1.3:+4299070 None:intergenic
CTGCCAAAGTTGATGAGCAG+AGG 0.624165 1.3:-4298893 MS.gene00445:CDS
CATCCAGATCCAACTCTGGT+GGG 0.645528 1.3:+4298550 None:intergenic
TGGAACTGATAACATGTTGG+TGG 0.647517 1.3:-4298814 MS.gene00445:CDS
TGTTGGAACTGATAACATGT+TGG 0.651961 1.3:-4298817 MS.gene00445:CDS
GAAGGGGCGAAGTCAACACC+AGG 0.655180 1.3:+4299086 None:intergenic
GGGGCGAAGTCAACACCAGG+TGG 0.667873 1.3:+4299089 None:intergenic
TGAAAGCATAATTTGCTCAG+GGG 0.670703 1.3:+4297823 None:intergenic
GGAACTGATAACATGTTGGT+GGG 0.673386 1.3:-4298813 MS.gene00445:CDS
GAGTTACTCAGAAACCTATG+GGG 0.687052 1.3:-4298461 MS.gene00445:CDS
AGTTACTCAGAAACCTATGG+GGG 0.734801 1.3:-4298460 MS.gene00445:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTAAAATTATTATGC+AGG - chr1.3:4298278-4298297 MS.gene00445:intron 10.0%
!! TAACGTTAACTAATAAAAAA+AGG + chr1.3:4298790-4298809 None:intergenic 15.0%
!! AATATAAAGAGAGATCAAAA+TGG + chr1.3:4298540-4298559 None:intergenic 20.0%
!! ATAAGATCAACAACATTAAT+TGG + chr1.3:4298565-4298584 None:intergenic 20.0%
!! TCAAGGATTAATTAATGTAT+TGG - chr1.3:4298237-4298256 MS.gene00445:intron 20.0%
!!! ATTTTATAATGAAGACAAGA+AGG - chr1.3:4298937-4298956 MS.gene00445:CDS 20.0%
!!! TCTCTTTTTATGTTCTATAT+AGG - chr1.3:4298099-4298118 MS.gene00445:intron 20.0%
! AAAAAATACCATCACATGAA+TGG + chr1.3:4298631-4298650 None:intergenic 25.0%
! GCAAATTATGCTTTCAATTA+TGG - chr1.3:4299066-4299085 MS.gene00445:CDS 25.0%
!!! TGAATTGCTTTGTTTGTTTT+TGG - chr1.3:4298974-4298993 MS.gene00445:CDS 25.0%
CTCTGTTCATTATTTCATCA+AGG - chr1.3:4298220-4298239 MS.gene00445:intron 30.0%
CTTGATGAAATAATGAACAG+AGG + chr1.3:4298222-4298241 None:intergenic 30.0%
! TCAAATGTCACAGATTTTGA+AGG - chr1.3:4298492-4298511 MS.gene00445:CDS 30.0%
!! ATTGAAAGCATAATTTGCTC+AGG + chr1.3:4299064-4299083 None:intergenic 30.0%
!! TTGAAAGCATAATTTGCTCA+GGG + chr1.3:4299063-4299082 None:intergenic 30.0%
!!! GTTTGTTTTTGGTGTTTATC+AGG - chr1.3:4298985-4299004 MS.gene00445:CDS 30.0%
AACTCAATCCATTCATGTGA+TGG - chr1.3:4298620-4298639 MS.gene00445:intron 35.0%
ACATTCAGTAGCAAAGATTG+AGG + chr1.3:4298659-4298678 None:intergenic 35.0%
ATGACGTGATTTGAAGAATC+TGG + chr1.3:4298822-4298841 None:intergenic 35.0%
GGAGTAAAACGCAATTCAAA+CGG + chr1.3:4297928-4297947 None:intergenic 35.0%
TGCCAACAAAAACAATGAAG+AGG - chr1.3:4297846-4297865 MS.gene00445:CDS 35.0%
TGTTGGAACTGATAACATGT+TGG - chr1.3:4298065-4298084 MS.gene00445:intron 35.0%
!! TGAAAGCATAATTTGCTCAG+GGG + chr1.3:4299062-4299081 None:intergenic 35.0%
!! TTTGGAGCTATAGTTGATGA+AGG - chr1.3:4298360-4298379 MS.gene00445:intron 35.0%
!!! AGCCTCTTCATTGTTTTTGT+TGG + chr1.3:4297851-4297870 None:intergenic 35.0%
!!! CTTCATTGTTTTTGTTGGCA+AGG + chr1.3:4297846-4297865 None:intergenic 35.0%
AGAATGCCATCAAAACTAGC+TGG - chr1.3:4298133-4298152 MS.gene00445:intron 40.0%
AGTTACTCAGAAACCTATGG+GGG - chr1.3:4298422-4298441 MS.gene00445:CDS 40.0%
GAAGAGGCTCAGAATTTCAA+TGG - chr1.3:4297862-4297881 MS.gene00445:CDS 40.0%
GAGTTACTCAGAAACCTATG+GGG - chr1.3:4298421-4298440 MS.gene00445:CDS 40.0%
GCAATTCAAACGGATCATAC+TGG + chr1.3:4297918-4297937 None:intergenic 40.0%
GGAACTGATAACATGTTGGT+GGG - chr1.3:4298069-4298088 MS.gene00445:intron 40.0%
GGAGTTACTCAGAAACCTAT+GGG - chr1.3:4298420-4298439 MS.gene00445:CDS 40.0%
TAACAAGGAGCTCATCAGAA+GGG + chr1.3:4297816-4297835 None:intergenic 40.0%
TGAAGCAGCAAAATTCCCTT+GGG + chr1.3:4297969-4297988 None:intergenic 40.0%
TGGAACTGATAACATGTTGG+TGG - chr1.3:4298068-4298087 MS.gene00445:intron 40.0%
TGGAGTTACTCAGAAACCTA+TGG - chr1.3:4298419-4298438 MS.gene00445:CDS 40.0%
TTGCTAACAATCCTCAGGTA+TGG - chr1.3:4298175-4298194 MS.gene00445:intron 40.0%
! ACGGGATTTTGGATGCAAAA+GGG - chr1.3:4298024-4298043 MS.gene00445:intron 40.0%
!! AGTTTTGATGGCATTCTGAG+CGG + chr1.3:4298130-4298149 None:intergenic 40.0%
!! TGTTTTTGTTGGCAAGGTAG+TGG + chr1.3:4297840-4297859 None:intergenic 40.0%
!!! CATAGTCCAGCTAGTTTTGA+TGG + chr1.3:4298142-4298161 None:intergenic 40.0%
AACAAGGAGCTCATCAGAAG+GGG + chr1.3:4297815-4297834 None:intergenic 45.0%
AGCAAAATTCCCTTGGGTGA+CGG + chr1.3:4297963-4297982 None:intergenic 45.0%
CAAACGGATCATACTGGTAC+AGG + chr1.3:4297912-4297931 None:intergenic 45.0%
CTAACAAGGAGCTCATCAGA+AGG + chr1.3:4297817-4297836 None:intergenic 45.0%
GCTGTTCGAGACATTACTGT+TGG - chr1.3:4298048-4298067 MS.gene00445:intron 45.0%
GTGAAGCAGCAAAATTCCCT+TGG + chr1.3:4297970-4297989 None:intergenic 45.0%
TGACTATGCTGTCTTGCACA+TGG - chr1.3:4299027-4299046 MS.gene00445:CDS 45.0%
TTGGATCTGGATGCTGAGTT+TGG - chr1.3:4298342-4298361 MS.gene00445:intron 45.0%
TTTCGCAAATGCCATACCTG+AGG + chr1.3:4298189-4298208 None:intergenic 45.0%
! CACACTTGCTAACAATCCTC+AGG - chr1.3:4298170-4298189 MS.gene00445:intron 45.0%
! CGGGATTTTGGATGCAAAAG+GGG - chr1.3:4298025-4298044 MS.gene00445:intron 45.0%
! CTTTTTCTTCCGTCACCCAA+GGG - chr1.3:4297951-4297970 MS.gene00445:intron 45.0%
! GACGGGATTTTGGATGCAAA+AGG - chr1.3:4298023-4298042 MS.gene00445:intron 45.0%
! GGGATTTTGGATGCAAAAGG+GGG - chr1.3:4298026-4298045 MS.gene00445:intron 45.0%
!! CAATGGTTCTGACCTGATTC+AGG - chr1.3:4297879-4297898 MS.gene00445:intron 45.0%
!!! AGATTTTGAAGGCACTCTGC+AGG - chr1.3:4298503-4298522 MS.gene00445:CDS 45.0%
ACAGGTTCAGCTCCTGAATC+AGG + chr1.3:4297894-4297913 None:intergenic 50.0%
ACTCCATTCGTCTTGTCAGC+AGG + chr1.3:4298405-4298424 None:intergenic 50.0%
CATCCAGATCCAACTCTGGT+GGG + chr1.3:4298335-4298354 None:intergenic 50.0%
CCTCCTCTGCTCATCAACTT+TGG + chr1.3:4297995-4298014 None:intergenic 50.0%
CTCCATTCGTCTTGTCAGCA+GGG + chr1.3:4298404-4298423 None:intergenic 50.0%
TCAGCATCCAGATCCAACTC+TGG + chr1.3:4298339-4298358 None:intergenic 50.0%
! CCTTTTTCTTCCGTCACCCA+AGG - chr1.3:4297950-4297969 MS.gene00445:intron 50.0%
! GGCACTGTAAGACGGGATTT+TGG - chr1.3:4298013-4298032 MS.gene00445:intron 50.0%
! TGGCAAGGTAGTGGCTAACA+AGG + chr1.3:4297831-4297850 None:intergenic 50.0%
!! CCAAAGTTGATGAGCAGAGG+AGG - chr1.3:4297992-4298011 MS.gene00445:intron 50.0%
!! CCTTGGGTGACGGAAGAAAA+AGG + chr1.3:4297953-4297972 None:intergenic 50.0%
!! CTGCCAAAGTTGATGAGCAG+AGG - chr1.3:4297989-4298008 MS.gene00445:intron 50.0%
!! GGGTGACGGAAGAAAAAGGA+CGG + chr1.3:4297949-4297968 None:intergenic 50.0%
ACTCAGAAACCTATGGGGGC+TGG - chr1.3:4298426-4298445 MS.gene00445:CDS 55.0%
CTCAGAAACCTATGGGGGCT+GGG - chr1.3:4298427-4298446 MS.gene00445:CDS 55.0%
GACCCTGCTGACAAGACGAA+TGG - chr1.3:4298399-4298418 MS.gene00445:CDS 55.0%
GCATCCAGATCCAACTCTGG+TGG + chr1.3:4298336-4298355 None:intergenic 55.0%
GTTTGACTGCCCACCAGAGT+TGG - chr1.3:4298323-4298342 MS.gene00445:intron 55.0%
TCAGAAACCTATGGGGGCTG+GGG - chr1.3:4298428-4298447 MS.gene00445:CDS 55.0%
! ACTAGTGCTGCTGCTGAGCA+AGG - chr1.3:4298462-4298481 MS.gene00445:CDS 55.0%
! GTTGATGAAGGCGATGCTGC+TGG - chr1.3:4298372-4298391 MS.gene00445:intron 55.0%
!! CAGAGGAGGCACTGTAAGAC+GGG - chr1.3:4298006-4298025 MS.gene00445:intron 55.0%
!! GCAGAGGAGGCACTGTAAGA+CGG - chr1.3:4298005-4298024 MS.gene00445:intron 55.0%
AAACCTATGGGGGCTGGGGA+TGG - chr1.3:4298432-4298451 MS.gene00445:CDS 60.0%
AACCTATGGGGGCTGGGGAT+GGG - chr1.3:4298433-4298452 MS.gene00445:CDS 60.0%
CTGCCCACCAGAGTTGGATC+TGG - chr1.3:4298329-4298348 MS.gene00445:intron 60.0%
GAAGGGGCGAAGTCAACACC+AGG + chr1.3:4297799-4297818 None:intergenic 60.0%
! AGTGCTGCTGCTGAGCAAGG+CGG - chr1.3:4298465-4298484 MS.gene00445:CDS 60.0%
ACCTATGGGGGCTGGGGATG+GGG - chr1.3:4298434-4298453 MS.gene00445:CDS 65.0%
GGGGCGAAGTCAACACCAGG+TGG + chr1.3:4297796-4297815 None:intergenic 65.0%
ATGGGGGCTGGGGATGGGGC+TGG - chr1.3:4298438-4298457 MS.gene00445:CDS 75.0%
GCCCCATCCCCAGCCCCCAT+AGG + chr1.3:4298438-4298457 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 4297781 4299123 4297781 ID=MS.gene00445
chr1.3 mRNA 4297781 4299123 4297781 ID=MS.gene00445.t1;Parent=MS.gene00445
chr1.3 exon 4298713 4299123 4298713 ID=MS.gene00445.t1.exon1;Parent=MS.gene00445.t1
chr1.3 CDS 4298713 4299123 4298713 ID=cds.MS.gene00445.t1;Parent=MS.gene00445.t1
chr1.3 exon 4298380 4298604 4298380 ID=MS.gene00445.t1.exon2;Parent=MS.gene00445.t1
chr1.3 CDS 4298380 4298604 4298380 ID=cds.MS.gene00445.t1;Parent=MS.gene00445.t1
chr1.3 exon 4297781 4297897 4297781 ID=MS.gene00445.t1.exon3;Parent=MS.gene00445.t1
chr1.3 CDS 4297781 4297897 4297781 ID=cds.MS.gene00445.t1;Parent=MS.gene00445.t1
Gene Sequence

>MS.gene00445

ATGGAATTGCTTCCACCTGGTGTTGACTTCGCCCCTTCTGATGAGCTCCTTGTTAGCCACTACCTTGCCAACAAAAACAATGAAGAGGCTCAGAATTTCAATGGTTCTGACCTGATTCAGGAGCTGAACCTGTACCAGTATGATCCGTTTGAATTGCGTTTTACTCCGTCCTTTTTCTTCCGTCACCCAAGGGAATTTTGCTGCTTCACTGCCAAAGTTGATGAGCAGAGGAGGCACTGTAAGACGGGATTTTGGATGCAAAAGGGGGCTGTTCGAGACATTACTGTTGGAACTGATAACATGTTGGTGGGAAAGAAGTCTCTTTTTATGTTCTATATAGGAAATTCCGCTCAGAATGCCATCAAAACTAGCTGGACTATGTACGAGTACACACTTGCTAACAATCCTCAGGTATGGCATTTGCGAAAACTAACTTTTCCTCTGTTCATTATTTCATCAAGGATTAATTAATGTATTGGCAACTACTAATTGTTTTTTATTTTTAAAATTATTATGCAGGCTCGTTTTGTTGTTTGTCGTGTGTTTGACTGCCCACCAGAGTTGGATCTGGATGCTGAGTTTGGAGCTATAGTTGATGAAGGCGATGCTGCTGGAGATGACCCTGCTGACAAGACGAATGGAGTTACTCAGAAACCTATGGGGGCTGGGGATGGGGCTGGTACTAGTGCTGCTGCTGAGCAAGGCGGTGCTTCAAATGTCACAGATTTTGAAGGCACTCTGCAGGTAAAATATATTCCATTTTGATCTCTCTTTATATTAACCAATTAATGTTGTTGATCTTATTTGCAACTGATTCTTTAAAATTTCAAAAATTTTACAACTCAATCCATTCATGTGATGGTATTTTTTGATTGCCTCAATCTTTGCTACTGAATGTAACATGTCAAAATGTCAATTGTATGTATCACTCTACACATGTATTTTTATTTTTATTTTTGTGTAGAAATTAAGTTATAATTCTCAAAACATATTCTTCAAATCACGTCCTTTTTTTATTAGTTAACGTTACTATTCTTACCAGATTCTTCAAATCACGTCATTTTTATTTTTCTTTAAATTTTTTGCTATGATAAATTCATTATTATTTTTTTTGTCGTTGTCGTTGTCACTTTTTGACAATGCAAATTTTCATTTCATTTTATAATGAAGACAAGAAGGTATTGCTGAAGTATTGAATTGCTTTGTTTGTTTTTGGTGTTTATCAGGCGAGTTATGCAGCATTTCTTGACTATGCTGTCTTGCACATGGAAGCTATGACCCCTGAGCAAATTATGCTTTCAATTATGGATGAAGATTTTCTTGAGATTGCTGACCTTGTATAA
Protein sequence

>MS.gene00445.t1

MELLPPGVDFAPSDELLVSHYLANKNNEEAQNFNGSDLIQELNLYQYDPFELRFTPSFFFRHPREFCCFTAKVDEQRRHCKTGFWMQKGAVRDITVGTDNMLVGKKSLFMFYIGNSAQNAIKTSWTMYEYTLANNPQARFVVCRVFDCPPELDLDAEFGAIVDEGDAAGDDPADKTNGVTQKPMGAGDGAGTSAAAEQGGASNVTDFEGTLQASYAAFLDYAVLHMEAMTPEQIMLSIMDEDFLEIADLV