AlfalfaGEDB | MS.gene004468

M. sativa cultivar XinJiangDaYe / MS.gene004468

KEGG: K08819
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004468.t1	XP_003594001.1	96.3	542	18	1	1	542	1	540	1.60E-303	1051.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004468.t1	Q9ZVM9	74.5	487	116	3	59	538	73	558	9.3e-215	747.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004468.t1	G7ISJ5	96.3	542	18	1	1	542	1	540	1.2e-303	1051.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene004468.t1	MTR_2g020210	99.077	542	3	1	1	542	1	540	1101
MS.gene004468.t1	MTR_4g118780	77.982	545	105	4	1	538	1	537	867
MS.gene004468.t1	MTR_7g114300	71.033	542	152	2	1	538	1	541	813
MS.gene004468.t1	MTR_1g081870	76.939	490	111	1	49	538	69	556	762
MS.gene004468.t1	MTR_7g114300	72.473	465	123	2	1	461	1	464	714
MS.gene004468.t1	MTR_3g098760	68.269	520	145	7	1	513	1	507	703
MS.gene004468.t1	MTR_8g099770	67.551	490	142	7	1	488	1	475	662
MS.gene004468.t1	MTR_2g085200	64.107	521	150	7	1	489	1	516	648
MS.gene004468.t1	MTR_7g114300	72.589	394	101	3	1	388	1	393	602
MS.gene004468.t1	MTR_7g114300	72.152	395	105	2	1	391	1	394	602

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene004468.t1	AT1G54610	72.692	509	130	5	37	538	52	558	764
MS.gene004468.t1	AT1G54610	72.692	509	130	5	37	538	52	558	764
MS.gene004468.t1	AT1G54610	72.692	509	130	5	37	538	52	558	764
MS.gene004468.t1	AT3G05050	61.498	574	173	9	1	534	1	566	660
MS.gene004468.t1	AT3G05050	61.498	574	173	9	1	534	1	566	660
MS.gene004468.t1	AT3G05050	61.498	574	173	9	1	534	1	566	660
MS.gene004468.t1	AT5G50860	72.340	423	114	3	80	499	90	512	643
MS.gene004468.t1	AT1G53050	61.466	532	170	6	1	502	1	527	640
MS.gene004468.t1	AT1G53050	61.466	532	170	6	1	502	1	527	640
MS.gene004468.t1	AT5G50860	71.859	398	104	4	80	469	90	487	597

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Find 159 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTAGGGATACTTTAAC+AGG	0.312923	2.4:-66611690	MS.gene004468:CDS
AAAGTAGATGTAGATGGTGG+TGG	0.590078	2.4:-66612512	MS.gene004468:CDS
AACAGTCATCAGTGGAAGAG+AGG	0.546209	2.4:-66612556	MS.gene004468:CDS
AACCTTCTTATCGACAATGA+TGG	0.473590	2.4:-66611245	MS.gene004468:CDS
AAGCTAGGGATACTTTAACA+GGG	0.685487	2.4:-66611689	MS.gene004468:CDS
AAGGGTCTCAATCAATGGCA+GGG	0.625546	2.4:+66610488	None:intergenic
AATCAAGTTCACAGAGCCTC+AGG	0.518095	2.4:-66611457	MS.gene004468:intron
AATCCACCTAATAATGTTCA+TGG	0.390760	2.4:-66612377	MS.gene004468:CDS
ACAGCAATGTTTACAAAGCT+AGG	0.488107	2.4:-66611704	MS.gene004468:CDS
ACATCAGAAGGATCGAAAAC+TGG	0.429118	2.4:+66608692	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTAAGGAAAGCTATTCA+TGG	+	chr2.4:66611028-66611047	None:intergenic	30.0%
AATAAATTACAATAGGCCAC+TGG	+	chr2.4:66610439-66610458	None:intergenic	30.0%
AATCCACCTAATAATGTTCA+TGG	-	chr2.4:66608772-66608791	MS.gene004468:CDS	30.0%
AATTACATCATAATGACTGC+TGG	-	chr2.4:66612113-66612132	MS.gene004468:intron	30.0%
ACACCCTAAAAATAGTAATG+TGG	-	chr2.4:66609266-66609285	MS.gene004468:intron	30.0%
ATAGCAATGTACTACATGTT+AGG	+	chr2.4:66609149-66609168	None:intergenic	30.0%
GAAGCAAATAACATCAAACT+AGG	+	chr2.4:66611343-66611362	None:intergenic	30.0%
TAATAATGTTCATGGTGAAC+AGG	-	chr2.4:66608780-66608799	MS.gene004468:CDS	30.0%
TCGACTAAATTAATGTTGTG+AGG	-	chr2.4:66610755-66610774	MS.gene004468:intron	30.0%
TGCTAGCAAGGAATAAATTT+AGG	-	chr2.4:66611912-66611931	MS.gene004468:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	66608574	66612597	66608574	ID=MS.gene004468
chr2.4	mRNA	66608574	66612597	66608574	ID=MS.gene004468.t1;Parent=MS.gene004468
chr2.4	exon	66612271	66612597	66612271	ID=MS.gene004468.t1.exon1;Parent=MS.gene004468.t1
chr2.4	CDS	66612271	66612597	66612271	ID=cds.MS.gene004468.t1;Parent=MS.gene004468.t1
chr2.4	exon	66611458	66611742	66611458	ID=MS.gene004468.t1.exon2;Parent=MS.gene004468.t1
chr2.4	CDS	66611458	66611742	66611458	ID=cds.MS.gene004468.t1;Parent=MS.gene004468.t1
chr2.4	exon	66611034	66611351	66611034	ID=MS.gene004468.t1.exon3;Parent=MS.gene004468.t1
chr2.4	CDS	66611034	66611351	66611034	ID=cds.MS.gene004468.t1;Parent=MS.gene004468.t1
chr2.4	exon	66610434	66610661	66610434	ID=MS.gene004468.t1.exon4;Parent=MS.gene004468.t1
chr2.4	CDS	66610434	66610661	66610434	ID=cds.MS.gene004468.t1;Parent=MS.gene004468.t1
chr2.4	exon	66609698	66609798	66609698	ID=MS.gene004468.t1.exon5;Parent=MS.gene004468.t1
chr2.4	CDS	66609698	66609798	66609698	ID=cds.MS.gene004468.t1;Parent=MS.gene004468.t1
chr2.4	exon	66609322	66609439	66609322	ID=MS.gene004468.t1.exon6;Parent=MS.gene004468.t1
chr2.4	CDS	66609322	66609439	66609322	ID=cds.MS.gene004468.t1;Parent=MS.gene004468.t1
chr2.4	exon	66608574	66608825	66608574	ID=MS.gene004468.t1.exon7;Parent=MS.gene004468.t1
chr2.4	CDS	66608574	66608825	66608574	ID=cds.MS.gene004468.t1;Parent=MS.gene004468.t1

Gene Sequence

>MS.gene004468

ATGGGTTGTGTGTTTGGTAAACAGTCATCAGTGGAAGAGAGGAGAGAGGAAGTGAGAGAAGAGAAAGTAGATGTAGATGGTGGTGGTGGTGGTAGTGGTAGAGAGGTTGAGAATGTGAAAGAGGGTGGAGAGGAGAAGAGAGTAAGGCCTAGTGGGGAGAGAAGGAGAAGATCTTCGAAAGCGAATCCGAGGTTGAGTAATCCACCTAATAATGTTCATGGTGAACAGGTTGCTGCTGGTTGGCCTTCTTGGCTTTCTAAGGTTGCTGGTGAAGCTATTAATGGATTGGTTCCTAGGAGAGCTGATACTTTTGAGAAGCTTGATAAGGTAAAAGAAATCTCTGACTCAAGTGGATAATTGCTTTTGTTTCCAATTTAAGATTTGAGATTGTGTTTAGATTTTTTTTATTTGGTGTATTGAGTTTTGAGAAAGTGAGTTTGTTTTGTTTTGTTAATTGCTCAGTTCCTTTAAAGAGTATTCAATGTTACTAACTTACTATTTGTATGTTTGGTTTAACGGTGAATTTGGCAGAATCACAACGGCACCTTGATTCTGCCAAGCTCATCATCAGTCCTAACATGTAGTACATTGCTATTTGGAGTTTTAAGATTTAAGATAATGTCAGGAATTGGCTCAAAAGGAGGGCTTGTTTATTGTTTGTGTTGTTTGGTTTCTGAATGCAAGCAATGGTAACACCCTAAAAATAGTAATGTGGATTCTGGACATTTTGTTTTTTGTTTGGAACTTTTAAATTGAAAATCAATCCGCATATTAGTGTCTTCAAAGGTTTTTTCTTCTTCTGTTTACTTGAAAAAGTTTGAATTTTGATGGGTGTCTTTACTATTTTTGTATCAGATTGGGCAGGGTACATACAGCAATGTTTACAAAGCTAGGGATACTTTAACAGGGAAGGTTGTAGCCTTAAAGAAGGTCCGTTTCGACAATTTAGAGCCTGAGAGTGTGAAGTTCATGGCCAGAGAGATTCTGATTCTGCGTCGTTTGGATCATCCCAATGTTGTCAAACTGGAAGGCTTAGTGACATCTAGAATGTCATGCAGTTTATATCTTGTGTTTGAATACATGGCGCATGATCTAGCTGGACTTGCTACAAACCCTGCAATCAAGTTCACAGAGCCTCAGGTGTTTGTTTACCTTACGAAGTACATGTTCTTGTTGATATATGATGATTCAGGAATAATTTAATCTTTTTTGGGTAGTTTTTTGACGTCGACCTTTGTAATTTTAGGTAAAATGTTACATGCATCAGCTATTTTCTGGGCTGGAACACTGTCACAACCGTCATGTGCTGCATCGTGATATAAAGGGTTCAAACCTTCTTATCGACAATGATGGAGTTCTTAAGATTGCCGATTTTGGATTAGCTTCCTTCTTTGATCCTAATCACAAGCACCCTATGACCAGTAGAGTGGTGACTTTATGGTATCGACCTCCAGAACTTCTTCTCGGAGCCACTGAATATGGTGTAGGCGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCAGAATTGTTGGCTGGAAAACCCATCATGCCTGGTCGAACAGAGGTAATCTCTATGATTGGATACAGTATATAAGTTATATCACTGTTGTCAAATAGCTGCTTTAGCACTACTGTCTAGCAGAATTTGAACAAATCGCAATTACTAGTATTCTTCCATATGCTATTTAGTATAAAATGGTGTAAAATAGCGGCTATAACGGCGCTATAGCACTGTAGCGTAGCAGAATTTGTACAAACCGCTATTTTCTGTGATCCGCGATTGACAAACTGAGTTATATAGTTGCACCTTTTTGGAGCATAATATGTATTCGGTTTATTAGCCTATGCTGAAATATTTGTTGCCAGTGGCCTATTGTAATTTATTTGAGATTTGTTATTCCTACTTTGGTGATATAGTATCCTTCATGGTTTGTAGGTGGAGCAGCTGCATAAGATATTTAAGTTATGTGGTTCTCCTTCTGAAGACTACTGGAAAAAGTCAAAGTTGCCACATGCTACCATTTTTAAGCCCCAACAATCATACAAGCGATGCATAGCGGAGACATTTAAGAATTTTCCGCCATCATCCCTGCCATTGATTGAGACCCTTCTCGCAATCGATCCAGATGAACGTCTGACTGCCACTGCTGCATTGCATAGTGAAGTAAGATAATAATTGAATCGACTAAATTAATGTTGTGAGGTTGCGTAATATCTTGTGCTTTTCTCTCTTTTGTACCGGAAAATGCTAAACTCTATAATTGGATGCGTTTATCATGTCCAAGTCTTAAAGAGAATAGTTAATACACCCTAATTTATAGCTCTATTCTCTATTTAATAACTATGAATAATAACAATTTCATAATATTATGAGGGGCCTTCTTATATAAGTTCGATTTAATGGCTTTCCTTACTTTCCACATTGATCATGCTTTTGTAAATTCTTTTCCGCCATGAATAGCTTTCCTTACTTTCCTTGCTGCTGGTGGTAAATGTTTCTGTCATAACTACTAAGTATGTACTTTCGGTTTTCTTACTTTCCACAATGAAGATTATTTATTGGTGAACTCTAAACTTCAATACATCCAATTTTTATTGGTATTTTCCTCTAAGTACGAAATAGGGCATTTTTTTTCTTTGCTTGTTTCTCAAAAGAGTGACTGACGTACATAGCTATGTGCTTGCAATTATATATAGGTTTAACCTTGAGATATACTGAATCGTGCTTACAATCTGTACAGTGTTTCAGTCATTGCATATAAAGATCCTAGTTTGATGTTATTTGCTTCTCTTTTGCAGTTCTTTACTACTAAACCATATGCATGTGATCCCTCTAGCCTTCCTAAATATCCTCCCAGCAAGGAGATGGATGCAAAGCTACGGGATGAAGAAGCTAGAAGGTCGCTTAAATTACTTTTAGCTTAAATTATCATAATAGATATTCACCAAAACACTTGCATGTTGGTTATGATTTGACCATGTAATGCTTTACTTTGTTCTTCTATTGTGTCTTTCTATCCATTTTCAATTTTATTTTACAAATGTTGCACTTGCTCATTCACTTCTCTTTCTCCCTGTCCTGTATTCAATCGGGGTAATTGCTTCACATGTATATACTTGAACATGCTTGTTTAATTTAAATTATGTCATGACTGTAGATTGAGAGCAGCTGGTAGATCAAATGCCGATGGTGTCAAGAAATCACGTCCACGTGAGCGAGTAAGGAGGGGACTTCCCGTTCCAGATGCCAATGCTGAACTGCAAGCAAATATTGATGTATGTCTGATAAAGCTCCTAATTCTCTCTAGCAAGTATTTTTTGTACTGCTTACTGATTAATGCTAGCAAGGAATAAATTTAGGCAAAATTGCACGAGTCTTTTAACTTAATTTAAAGTTTCAAACCGGTCTTTTTTATGTCAAATTAGTCATTTTTTCATGTCTGACCAAACTTCATTTTTATCTATCTATGTTGCCAAAAAGTTTTACTTGATGATTTAAAAAGTTAAATTTAATCTTAAATTAATCAAGATAACATCTAAATTACATCATAATGACTGCTGGTCAAGATAGCATTGATGGATAGGTTACAACATTGAACTGTGTTGATACCATCTTCTGGAATGCTGCTTTAGATTTGATAAATTTGGTTGAAGTAATTACCATCACTGCAAAAACCTAATATATGAAGCTAATTTAGTACTGTTGTAGATAATTTTGTTATCTTGGCTTATATGTTATAGAAATCGCGTTGACATTTAACTCTTACTACAGAGACGGCGATTGATCACGCACGCAAATGCTAAGAGCAAGAGTGAGAAATTTCCTCCTCCCCACCAAGACGGAGATCTAGGCTATCCTTTGGGTTCTTCACAACACATGGATCCAGTTTTCGATCCTTCTGATGTTCCATTCAGTTCCACAAACTTGTCACTACCCAAAGCAGATATCCATACTTGGTCTGGTCCATTGGTAGATCCCGGCAGCATTGGTGCACCGAGGAGAAAGAAGAAACACGGCAGGTGA

Protein sequence

>MS.gene004468.t1

MGCVFGKQSSVEERREEVREEKVDVDGGGGGSGREVENVKEGGEEKRVRPSGERRRRSSKANPRLSNPPNNVHGEQVAAGWPSWLSKVAGEAINGLVPRRADTFEKLDKIGQGTYSNVYKARDTLTGKVVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMAHDLAGLATNPAIKFTEPQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATEYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWKKSKLPHATIFKPQQSYKRCIAETFKNFPPSSLPLIETLLAIDPDERLTATAALHSEFFTTKPYACDPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNADGVKKSRPRERVRRGLPVPDANAELQANIDRRRLITHANAKSKSEKFPPPHQDGDLGYPLGSSQHMDPVFDPSDVPFSSTNLSLPKADIHTWSGPLVDPGSIGAPRRKKKHGR