Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00448.t1 | XP_003589158.1 | 98.3 | 236 | 4 | 0 | 1 | 236 | 1 | 236 | 3.60E-130 | 474.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00448.t1 | Q6X7J9 | 52.9 | 259 | 91 | 9 | 1 | 236 | 1 | 251 | 2.3e-56 | 220.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00448.t1 | G7I2E0 | 98.3 | 236 | 4 | 0 | 1 | 236 | 1 | 236 | 2.6e-130 | 474.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene00448.t1 | TF | HB-WOX |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00448.t1 | MTR_1g019130 | 98.305 | 236 | 4 | 0 | 1 | 236 | 1 | 236 | 1.34e-175 | 482 |
MS.gene00448.t1 | MTR_1g019130 | 97.861 | 187 | 4 | 0 | 1 | 187 | 1 | 187 | 1.55e-135 | 380 |
MS.gene00448.t1 | MTR_8g107210 | 45.255 | 137 | 69 | 1 | 22 | 152 | 22 | 158 | 2.87e-29 | 112 |
MS.gene00448.t1 | MTR_7g060630 | 71.642 | 67 | 19 | 0 | 86 | 152 | 4 | 70 | 7.40e-29 | 108 |
MS.gene00448.t1 | MTR_4g084550 | 68.750 | 64 | 20 | 0 | 89 | 152 | 63 | 126 | 1.77e-26 | 101 |
MS.gene00448.t1 | MTR_4g063735 | 36.932 | 176 | 81 | 4 | 90 | 235 | 25 | 200 | 2.33e-26 | 103 |
MS.gene00448.t1 | MTR_5g081990 | 65.152 | 66 | 23 | 0 | 90 | 155 | 33 | 98 | 1.14e-25 | 99.4 |
MS.gene00448.t1 | MTR_5g021930 | 64.062 | 64 | 22 | 1 | 89 | 151 | 29 | 92 | 1.54e-22 | 94.0 |
MS.gene00448.t1 | MTR_3g088485 | 40.146 | 137 | 60 | 2 | 22 | 152 | 22 | 142 | 8.33e-22 | 88.6 |
MS.gene00448.t1 | MTR_8g095580 | 76.923 | 52 | 12 | 0 | 101 | 152 | 93 | 144 | 3.55e-21 | 87.0 |
MS.gene00448.t1 | MTR_2g015000 | 35.577 | 104 | 55 | 1 | 49 | 152 | 26 | 117 | 5.00e-14 | 71.2 |
MS.gene00448.t1 | MTR_7g025010 | 46.774 | 62 | 33 | 0 | 90 | 151 | 47 | 108 | 2.79e-13 | 68.9 |
MS.gene00448.t1 | MTR_4g088070 | 37.778 | 90 | 44 | 1 | 61 | 150 | 12 | 89 | 2.25e-12 | 66.2 |
MS.gene00448.t1 | MTR_3g115620 | 39.474 | 76 | 46 | 0 | 90 | 165 | 82 | 157 | 4.15e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00448.t1 | AT1G46480 | 52.896 | 259 | 91 | 9 | 1 | 236 | 1 | 251 | 1.58e-72 | 221 |
MS.gene00448.t1 | AT1G46480 | 59.067 | 193 | 60 | 7 | 1 | 182 | 1 | 185 | 2.95e-63 | 196 |
MS.gene00448.t1 | AT3G18010 | 42.857 | 147 | 74 | 2 | 6 | 152 | 2 | 138 | 5.96e-30 | 114 |
MS.gene00448.t1 | AT3G11260 | 56.818 | 88 | 33 | 1 | 87 | 169 | 16 | 103 | 1.21e-27 | 104 |
MS.gene00448.t1 | AT5G59340 | 61.333 | 75 | 29 | 0 | 78 | 152 | 2 | 76 | 5.60e-27 | 104 |
MS.gene00448.t1 | AT2G28610 | 68.182 | 66 | 21 | 0 | 87 | 152 | 5 | 70 | 9.58e-27 | 103 |
MS.gene00448.t1 | AT5G05770 | 63.077 | 65 | 24 | 0 | 90 | 154 | 29 | 93 | 1.68e-24 | 94.4 |
MS.gene00448.t1 | AT2G17950 | 51.765 | 85 | 40 | 1 | 89 | 172 | 37 | 121 | 1.02e-23 | 96.7 |
MS.gene00448.t1 | AT2G01500 | 66.667 | 63 | 19 | 1 | 84 | 144 | 53 | 115 | 2.02e-21 | 90.1 |
MS.gene00448.t1 | AT2G33880 | 38.614 | 101 | 52 | 1 | 49 | 149 | 24 | 114 | 4.34e-14 | 71.2 |
MS.gene00448.t1 | AT2G33880 | 38.614 | 101 | 52 | 1 | 49 | 149 | 24 | 114 | 4.61e-14 | 70.9 |
MS.gene00448.t1 | AT1G20700 | 47.541 | 61 | 32 | 0 | 90 | 150 | 33 | 93 | 2.65e-13 | 65.9 |
MS.gene00448.t1 | AT5G45980 | 46.774 | 62 | 33 | 0 | 90 | 151 | 55 | 116 | 4.88e-13 | 67.8 |
MS.gene00448.t1 | AT1G20710 | 38.462 | 91 | 44 | 1 | 97 | 187 | 86 | 164 | 6.39e-13 | 65.9 |
MS.gene00448.t1 | AT1G20700 | 47.541 | 61 | 32 | 0 | 90 | 150 | 95 | 155 | 8.99e-13 | 65.5 |
MS.gene00448.t1 | AT1G20700 | 47.541 | 61 | 32 | 0 | 90 | 150 | 95 | 155 | 1.07e-12 | 65.5 |
MS.gene00448.t1 | AT4G35550 | 47.541 | 61 | 32 | 0 | 90 | 150 | 99 | 159 | 1.13e-11 | 63.2 |
Find 60 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAATTCACACGTGGATTT+TGG | 0.121803 | 1.3:-4327634 | MS.gene00448:CDS |
TCTCGCGTGCTTTGTGGTTT+TGG | 0.203041 | 1.3:+4326801 | None:intergenic |
AAACTCCTTCATCTGCCTTC+TGG | 0.237007 | 1.3:+4326266 | None:intergenic |
AACTCCTTCATCTGCCTTCT+GGG | 0.285945 | 1.3:+4326267 | None:intergenic |
CAACTTTGGACACCCCAAAA+AGG | 0.296385 | 1.3:-4326682 | MS.gene00448:CDS |
ACTAATTCTAGGAGCACTTT+CGG | 0.300053 | 1.3:+4327478 | None:intergenic |
CTAATTCTAGGAGCACTTTC+GGG | 0.314910 | 1.3:+4327479 | None:intergenic |
ACAAGAACAAATAGGAATAT+TGG | 0.328145 | 1.3:-4326936 | MS.gene00448:CDS |
GAGGAAGAAAGACTAATTCT+AGG | 0.342909 | 1.3:+4327467 | None:intergenic |
TGTTCTATTTGCTGTGCATT+TGG | 0.355896 | 1.3:+4326884 | None:intergenic |
GGATTCCACCTTGTCCCTCC+TGG | 0.366142 | 1.3:+4326962 | None:intergenic |
ATCTGCCTTCTGGGTGTAAT+GGG | 0.376276 | 1.3:+4326276 | None:intergenic |
CTTTAGTACTATTACAACTT+TGG | 0.384910 | 1.3:-4326696 | MS.gene00448:CDS |
CATCTGCCTTCTGGGTGTAA+TGG | 0.398760 | 1.3:+4326275 | None:intergenic |
ATTCCTATTTGTTCTTGTGT+TGG | 0.415008 | 1.3:+4326941 | None:intergenic |
AATCCAACACAAGAACAAAT+AGG | 0.426122 | 1.3:-4326944 | MS.gene00448:CDS |
TTCTCTTCCAAGTACTCAAA+TGG | 0.427494 | 1.3:+4326347 | None:intergenic |
TTTGTCTCTCGCGTGCTTTG+TGG | 0.448508 | 1.3:+4326795 | None:intergenic |
TAGGTTGAAACGCATATTCC+AGG | 0.450427 | 1.3:-4326980 | MS.gene00448:CDS |
TCCACCTTCACCGCAAAGCC+AGG | 0.461999 | 1.3:-4327426 | MS.gene00448:intron |
GAGTTGGCCATTTGAGTACT+TGG | 0.464745 | 1.3:-4326354 | MS.gene00448:CDS |
GGTGTTAGAAGTAACATTAT+CGG | 0.465029 | 1.3:+4327538 | None:intergenic |
CACAGACACAAGTGTGGTGG+TGG | 0.469900 | 1.3:+4326727 | None:intergenic |
CAAAGTTGTAATAGTACTAA+AGG | 0.472738 | 1.3:+4326697 | None:intergenic |
AGCAAGTACGGTAAAATTGA+AGG | 0.477134 | 1.3:-4326845 | MS.gene00448:CDS |
CAACTCCTACTCTTCTTCAA+TGG | 0.501838 | 1.3:+4326371 | None:intergenic |
AGTGTGGTGGTGGGAGTTCG+AGG | 0.518160 | 1.3:+4326737 | None:intergenic |
CATGAACCTTCCCTCACACT+TGG | 0.520457 | 1.3:-4327608 | MS.gene00448:CDS |
TGAACCTGGCTTTGCGGTGA+AGG | 0.521265 | 1.3:+4327422 | None:intergenic |
GTTGTAATAGTACTAAAGGT+GGG | 0.528602 | 1.3:+4326701 | None:intergenic |
TGAGATCAAAAGAAAGAGAA+GGG | 0.531578 | 1.3:+4327516 | None:intergenic |
AGTATATGAACCTGGCTTTG+CGG | 0.544738 | 1.3:+4327416 | None:intergenic |
ATAGTCCATTGAAGAAGAGT+AGG | 0.545832 | 1.3:-4326376 | MS.gene00448:CDS |
AAGCAGAAACGTAACAGTCT+TGG | 0.547628 | 1.3:-4326773 | MS.gene00448:CDS |
ACAGTTCAACTTAGCAAGTA+CGG | 0.553808 | 1.3:-4326857 | MS.gene00448:CDS |
ATCTTTCTTGTTATCATCAG+AGG | 0.556963 | 1.3:+4327448 | None:intergenic |
CGCATATTCCAGGAGGGACA+AGG | 0.565252 | 1.3:-4326970 | MS.gene00448:CDS |
TACACCCAGAAGGCAGATGA+AGG | 0.566613 | 1.3:-4326271 | None:intergenic |
GTGGGAGTTCGAGGACTATG+AGG | 0.567688 | 1.3:+4326746 | None:intergenic |
TTGGTCAATGTGCAAAGTAG+AGG | 0.568050 | 1.3:-4326321 | MS.gene00448:CDS |
TTGAGATCAAAAGAAAGAGA+AGG | 0.574637 | 1.3:+4327515 | None:intergenic |
AGTTGTAATAGTACTAAAGG+TGG | 0.581733 | 1.3:+4326700 | None:intergenic |
AACGCTTGCAACCAAGTGTG+AGG | 0.582297 | 1.3:+4327597 | None:intergenic |
GCAAGTACGGTAAAATTGAA+GGG | 0.588273 | 1.3:-4326844 | MS.gene00448:CDS |
CATTGAAGAAGAGTAGGAGT+TGG | 0.590517 | 1.3:-4326370 | MS.gene00448:CDS |
ACCTGGCTTTGCGGTGAAGG+TGG | 0.590968 | 1.3:+4327425 | None:intergenic |
TGTAATAGTACTAAAGGTGG+GGG | 0.603492 | 1.3:+4326703 | None:intergenic |
TTGTAATAGTACTAAAGGTG+GGG | 0.606911 | 1.3:+4326702 | None:intergenic |
TTGGAGATGTTATACAGAGG+TGG | 0.611718 | 1.3:-4326917 | MS.gene00448:CDS |
GAGTTCGAGGACTATGAGGA+AGG | 0.633348 | 1.3:+4326750 | None:intergenic |
ACGCTTGCAACCAAGTGTGA+GGG | 0.656705 | 1.3:+4327598 | None:intergenic |
TTGAAACGCATATTCCAGGA+GGG | 0.657126 | 1.3:-4326976 | MS.gene00448:CDS |
ACAGACACAAGTGTGGTGGT+GGG | 0.659851 | 1.3:+4326728 | None:intergenic |
GGACACAGACACAAGTGTGG+TGG | 0.666759 | 1.3:+4326724 | None:intergenic |
GAGATCAAAAGAAAGAGAAG+GGG | 0.671823 | 1.3:+4327517 | None:intergenic |
TTGCAACCAAGTGTGAGGGA+AGG | 0.674259 | 1.3:+4327602 | None:intergenic |
GTTGAAACGCATATTCCAGG+AGG | 0.708848 | 1.3:-4326977 | MS.gene00448:CDS |
ATATTGGAGATGTTATACAG+AGG | 0.712720 | 1.3:-4326920 | MS.gene00448:CDS |
AAAGTGCATCAATTCACACG+TGG | 0.742454 | 1.3:-4327641 | MS.gene00448:CDS |
ATATTCCAGGAGGGACAAGG+TGG | 0.756182 | 1.3:-4326967 | MS.gene00448:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATAATACTAATAAAGTATTT+TGG | - | chr1.3:4326704-4326723 | MS.gene00448:CDS | 10.0% |
!! | ACAGACTTAATTAAAAAAAA+TGG | + | chr1.3:4326549-4326568 | None:intergenic | 15.0% |
!! | AATACTATAATCTTGTTACT+AGG | - | chr1.3:4327446-4327465 | MS.gene00448:CDS | 20.0% |
!! | AATTAGTATACTATTGTTCA+TGG | + | chr1.3:4327424-4327443 | None:intergenic | 20.0% |
!! | ATTAACTTCATGTAACATAT+AGG | - | chr1.3:4326661-4326680 | MS.gene00448:intron | 20.0% |
!! | TCTATTATTTGTGTATGTAT+AGG | - | chr1.3:4326919-4326938 | MS.gene00448:CDS | 20.0% |
!! | TTAACTTCATGTAACATATA+GGG | - | chr1.3:4326662-4326681 | MS.gene00448:intron | 20.0% |
!!! | GTGTTATTAGAAGAAATTTT+AGG | + | chr1.3:4326361-4326380 | None:intergenic | 20.0% |
!!! | TCGAATATGTTACATTTTTT+TGG | - | chr1.3:4327487-4327506 | MS.gene00448:CDS | 20.0% |
!!! | TTGTTCATGGTTTTAAATTA+CGG | + | chr1.3:4327411-4327430 | None:intergenic | 20.0% |
! | ACAAGAACAAATAGGAATAT+TGG | - | chr1.3:4326982-4327001 | MS.gene00448:intron | 25.0% |
! | CAAAGTTGTAATAGTACTAA+AGG | + | chr1.3:4327224-4327243 | None:intergenic | 25.0% |
! | CTTTAGTACTATTACAACTT+TGG | - | chr1.3:4327222-4327241 | MS.gene00448:intron | 25.0% |
! | TACATCTGATAACTGAAATA+CGG | + | chr1.3:4326749-4326768 | None:intergenic | 25.0% |
! | TCAACTTAAGCTATATATTG+TGG | - | chr1.3:4327282-4327301 | MS.gene00448:intron | 25.0% |
!! | AATATGAACATACCCTTTTT+GGG | + | chr1.3:4327252-4327271 | None:intergenic | 25.0% |
!! | CGACAATATAAAGGATTTTA+AGG | + | chr1.3:4327330-4327349 | None:intergenic | 25.0% |
!!! | ACTAATAAAGTATTTTGGTC+CGG | - | chr1.3:4326709-4326728 | MS.gene00448:CDS | 25.0% |
!!! | TATGTTACATTTTTTTGGAC+AGG | - | chr1.3:4327492-4327511 | MS.gene00448:CDS | 25.0% |
!!! | TCGTTTAAAAGCTTTTGATT+TGG | - | chr1.3:4326869-4326888 | MS.gene00448:CDS | 25.0% |
!!! | TTTTTGATTAAAAGGAACGT+AGG | - | chr1.3:4327384-4327403 | MS.gene00448:intron | 25.0% |
AAGGGAAAAATGTGTTCTAT+TGG | - | chr1.3:4327092-4327111 | MS.gene00448:intron | 30.0% | |
AATCCAACACAAGAACAAAT+AGG | - | chr1.3:4326974-4326993 | MS.gene00448:CDS | 30.0% | |
AATTATACTACTCTACTGCA+TGG | + | chr1.3:4326576-4326595 | None:intergenic | 30.0% | |
AGTACTTGGAAGAGAAAAAT+TGG | - | chr1.3:4327578-4327597 | MS.gene00448:CDS | 30.0% | |
AGTTGTAATAGTACTAAAGG+TGG | + | chr1.3:4327221-4327240 | None:intergenic | 30.0% | |
ATATTGGAGATGTTATACAG+AGG | - | chr1.3:4326998-4327017 | MS.gene00448:intron | 30.0% | |
ATTCCTATTTGTTCTTGTGT+TGG | + | chr1.3:4326980-4326999 | None:intergenic | 30.0% | |
GGTGTTAGAAGTAACATTAT+CGG | + | chr1.3:4326383-4326402 | None:intergenic | 30.0% | |
GTTGTAATAGTACTAAAGGT+GGG | + | chr1.3:4327220-4327239 | None:intergenic | 30.0% | |
TGAGATCAAAAGAAAGAGAA+GGG | + | chr1.3:4326405-4326424 | None:intergenic | 30.0% | |
TTGAGATCAAAAGAAAGAGA+AGG | + | chr1.3:4326406-4326425 | None:intergenic | 30.0% | |
TTGTAATAGTACTAAAGGTG+GGG | + | chr1.3:4327219-4327238 | None:intergenic | 30.0% | |
! | ATATGAACATACCCTTTTTG+GGG | + | chr1.3:4327251-4327270 | None:intergenic | 30.0% |
! | ATCTTTCTTGTTATCATCAG+AGG | + | chr1.3:4326473-4326492 | None:intergenic | 30.0% |
! | GAATATGAACATACCCTTTT+TGG | + | chr1.3:4327253-4327272 | None:intergenic | 30.0% |
!!! | CTAATAAAGTATTTTGGTCC+GGG | - | chr1.3:4326710-4326729 | MS.gene00448:CDS | 30.0% |
ACAGTTCAACTTAGCAAGTA+CGG | - | chr1.3:4327061-4327080 | MS.gene00448:intron | 35.0% | |
AGCAAGTACGGTAAAATTGA+AGG | - | chr1.3:4327073-4327092 | MS.gene00448:intron | 35.0% | |
ATAGTCCATTGAAGAAGAGT+AGG | - | chr1.3:4327542-4327561 | MS.gene00448:CDS | 35.0% | |
GAGATCAAAAGAAAGAGAAG+GGG | + | chr1.3:4326404-4326423 | None:intergenic | 35.0% | |
GAGGAAGAAAGACTAATTCT+AGG | + | chr1.3:4326454-4326473 | None:intergenic | 35.0% | |
GCAAGTACGGTAAAATTGAA+GGG | - | chr1.3:4327074-4327093 | MS.gene00448:intron | 35.0% | |
TAGAGCTTAGTATATGAACC+TGG | + | chr1.3:4326513-4326532 | None:intergenic | 35.0% | |
TGTAATAGTACTAAAGGTGG+GGG | + | chr1.3:4327218-4327237 | None:intergenic | 35.0% | |
TTCTCTTCCAAGTACTCAAA+TGG | + | chr1.3:4327574-4327593 | None:intergenic | 35.0% | |
! | ATCAATTCACACGTGGATTT+TGG | - | chr1.3:4326284-4326303 | MS.gene00448:CDS | 35.0% |
! | TAGTTGCGTCGACAATATAA+AGG | + | chr1.3:4327339-4327358 | None:intergenic | 35.0% |
! | TCAATTCACACGTGGATTTT+GGG | - | chr1.3:4326285-4326304 | MS.gene00448:CDS | 35.0% |
!! | ACTAATTCTAGGAGCACTTT+CGG | + | chr1.3:4326443-4326462 | None:intergenic | 35.0% |
!! | GAAGAAATTTTAGGTGCAAG+AGG | + | chr1.3:4326352-4326371 | None:intergenic | 35.0% |
!! | TGTTCTATTTGCTGTGCATT+TGG | + | chr1.3:4327037-4327056 | None:intergenic | 35.0% |
AAAGTGCATCAATTCACACG+TGG | - | chr1.3:4326277-4326296 | MS.gene00448:CDS | 40.0% | |
AACTTTGGACACCCCAAAAA+GGG | - | chr1.3:4327237-4327256 | MS.gene00448:intron | 40.0% | |
AAGCAGAAACGTAACAGTCT+TGG | - | chr1.3:4327145-4327164 | MS.gene00448:intron | 40.0% | |
AGTAACTCTCGAGTCTCATA+TGG | + | chr1.3:4326820-4326839 | None:intergenic | 40.0% | |
ATACTACTCTACTGCATGGA+TGG | + | chr1.3:4326572-4326591 | None:intergenic | 40.0% | |
CAACTCCTACTCTTCTTCAA+TGG | + | chr1.3:4327550-4327569 | None:intergenic | 40.0% | |
CATTGAAGAAGAGTAGGAGT+TGG | - | chr1.3:4327548-4327567 | MS.gene00448:CDS | 40.0% | |
CGAGTCTCATATGGAAAAAG+AGG | + | chr1.3:4326811-4326830 | None:intergenic | 40.0% | |
TACGGTTCAACAATTTCTCC+CGG | + | chr1.3:4326731-4326750 | None:intergenic | 40.0% | |
TTGAAACGCATATTCCAGGA+GGG | - | chr1.3:4326942-4326961 | MS.gene00448:CDS | 40.0% | |
TTGGAGATGTTATACAGAGG+TGG | - | chr1.3:4327001-4327020 | MS.gene00448:intron | 40.0% | |
TTGGTCAATGTGCAAAGTAG+AGG | - | chr1.3:4327597-4327616 | MS.gene00448:CDS | 40.0% | |
! | TAGGTTGAAACGCATATTCC+AGG | - | chr1.3:4326938-4326957 | MS.gene00448:CDS | 40.0% |
! | TTTTGGACAGGTGCAAGTAA+TGG | - | chr1.3:4327504-4327523 | MS.gene00448:CDS | 40.0% |
!! | AGTATATGAACCTGGCTTTG+CGG | + | chr1.3:4326505-4326524 | None:intergenic | 40.0% |
!! | CTAATTCTAGGAGCACTTTC+GGG | + | chr1.3:4326442-4326461 | None:intergenic | 40.0% |
AGGTCTCTGCAACGACATTT+CGG | + | chr1.3:4327310-4327329 | None:intergenic | 45.0% | |
ATCTGCCTTCTGGGTGTAAT+GGG | + | chr1.3:4327645-4327664 | None:intergenic | 45.0% | |
CAACTTTGGACACCCCAAAA+AGG | - | chr1.3:4327236-4327255 | MS.gene00448:intron | 45.0% | |
GAGTTGGCCATTTGAGTACT+TGG | - | chr1.3:4327564-4327583 | MS.gene00448:CDS | 45.0% | |
GTTGAAACGCATATTCCAGG+AGG | - | chr1.3:4326941-4326960 | MS.gene00448:CDS | 45.0% | |
TGTCGACGCAACTATAGTCT+TGG | - | chr1.3:4327345-4327364 | MS.gene00448:intron | 45.0% | |
! | CTTTTCCCATTACACCCAGA+AGG | - | chr1.3:4327637-4327656 | MS.gene00448:CDS | 45.0% |
!! | ATCAAAAAAAAAAAAAATTA+CGG | + | chr1.3:4327372-4327391 | None:intergenic | 5.0% |
!!! | TTTTTTTTTTTTTGATTAAA+AGG | - | chr1.3:4327376-4327395 | MS.gene00448:intron | 5.0% |
AACGCTTGCAACCAAGTGTG+AGG | + | chr1.3:4326324-4326343 | None:intergenic | 50.0% | |
ACAGACACAAGTGTGGTGGT+GGG | + | chr1.3:4327193-4327212 | None:intergenic | 50.0% | |
ACGCTTGCAACCAAGTGTGA+GGG | + | chr1.3:4326323-4326342 | None:intergenic | 50.0% | |
ATATTCCAGGAGGGACAAGG+TGG | - | chr1.3:4326951-4326970 | MS.gene00448:CDS | 50.0% | |
CATCTGCCTTCTGGGTGTAA+TGG | + | chr1.3:4327646-4327665 | None:intergenic | 50.0% | |
CATGAACCTTCCCTCACACT+TGG | - | chr1.3:4326310-4326329 | MS.gene00448:CDS | 50.0% | |
GAGTTCGAGGACTATGAGGA+AGG | + | chr1.3:4327171-4327190 | None:intergenic | 50.0% | |
TTGCAACCAAGTGTGAGGGA+AGG | + | chr1.3:4326319-4326338 | None:intergenic | 50.0% | |
TTTGTCTCTCGCGTGCTTTG+TGG | + | chr1.3:4327126-4327145 | None:intergenic | 50.0% | |
! | TCTCGCGTGCTTTGTGGTTT+TGG | + | chr1.3:4327120-4327139 | None:intergenic | 50.0% |
CACAGACACAAGTGTGGTGG+TGG | + | chr1.3:4327194-4327213 | None:intergenic | 55.0% | |
CGCATATTCCAGGAGGGACA+AGG | - | chr1.3:4326948-4326967 | MS.gene00448:CDS | 55.0% | |
GGACACAGACACAAGTGTGG+TGG | + | chr1.3:4327197-4327216 | None:intergenic | 55.0% | |
GTGGGAGTTCGAGGACTATG+AGG | + | chr1.3:4327175-4327194 | None:intergenic | 55.0% | |
!! | TGAACCTGGCTTTGCGGTGA+AGG | + | chr1.3:4326499-4326518 | None:intergenic | 55.0% |
GGATTCCACCTTGTCCCTCC+TGG | + | chr1.3:4326959-4326978 | None:intergenic | 60.0% | |
GGGGGACACAGACACAAGTG+TGG | + | chr1.3:4327200-4327219 | None:intergenic | 60.0% | |
TCCACCTTCACCGCAAAGCC+AGG | - | chr1.3:4326492-4326511 | MS.gene00448:intron | 60.0% | |
!! | ACCTGGCTTTGCGGTGAAGG+TGG | + | chr1.3:4326496-4326515 | None:intergenic | 60.0% |
!! | AGTGTGGTGGTGGGAGTTCG+AGG | + | chr1.3:4327184-4327203 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 4326274 | 4327666 | 4326274 | ID=MS.gene00448 |
chr1.3 | mRNA | 4326274 | 4327666 | 4326274 | ID=MS.gene00448.t1;Parent=MS.gene00448 |
chr1.3 | exon | 4327427 | 4327666 | 4327427 | ID=MS.gene00448.t1.exon1;Parent=MS.gene00448.t1 |
chr1.3 | CDS | 4327427 | 4327666 | 4327427 | ID=cds.MS.gene00448.t1;Parent=MS.gene00448.t1 |
chr1.3 | exon | 4326682 | 4326999 | 4326682 | ID=MS.gene00448.t1.exon2;Parent=MS.gene00448.t1 |
chr1.3 | CDS | 4326682 | 4326999 | 4326682 | ID=cds.MS.gene00448.t1;Parent=MS.gene00448.t1 |
chr1.3 | exon | 4326274 | 4326426 | 4326274 | ID=MS.gene00448.t1.exon3;Parent=MS.gene00448.t1 |
chr1.3 | CDS | 4326274 | 4326426 | 4326274 | ID=cds.MS.gene00448.t1;Parent=MS.gene00448.t1 |
Gene Sequence |
Protein sequence |