Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00449.t1 | XP_003589157.1 | 96.4 | 412 | 15 | 0 | 1 | 412 | 1 | 412 | 1.60E-221 | 778.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00449.t1 | Q56XU4 | 43.0 | 449 | 180 | 17 | 1 | 409 | 1 | 413 | 3.6e-73 | 276.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00449.t1 | G7I2D9 | 96.4 | 412 | 15 | 0 | 1 | 412 | 1 | 412 | 1.1e-221 | 778.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene00449.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00449.t1 | MTR_1g019120 | 97.330 | 412 | 11 | 0 | 1 | 412 | 1 | 412 | 0.0 | 830 |
| MS.gene00449.t1 | MTR_1g019120 | 97.643 | 297 | 7 | 0 | 116 | 412 | 1 | 297 | 0.0 | 600 |
| MS.gene00449.t1 | MTR_8g076080 | 52.740 | 146 | 67 | 2 | 1 | 145 | 2 | 146 | 6.20e-38 | 144 |
| MS.gene00449.t1 | MTR_8g076080 | 46.000 | 100 | 51 | 2 | 307 | 406 | 461 | 557 | 3.83e-18 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00449.t1 | AT1G19860 | 43.207 | 449 | 179 | 16 | 1 | 409 | 1 | 413 | 7.27e-95 | 291 |
| MS.gene00449.t1 | AT1G19860 | 42.424 | 429 | 173 | 15 | 21 | 409 | 21 | 415 | 2.02e-85 | 266 |
| MS.gene00449.t1 | AT5G66270 | 27.193 | 456 | 223 | 15 | 6 | 386 | 6 | 427 | 2.66e-31 | 124 |
| MS.gene00449.t1 | AT3G51180 | 34.921 | 252 | 125 | 9 | 1 | 225 | 1 | 240 | 3.78e-25 | 107 |
Find 95 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTGGTTCTGGCGATTAC+TGG | 0.231142 | 1.3:-4346159 | None:intergenic |
| AGAATATTATTGAGTAATTC+AGG | 0.252544 | 1.3:-4345783 | None:intergenic |
| GCAATAGCTGGACTGATTTC+AGG | 0.255929 | 1.3:-4346035 | None:intergenic |
| TACATTATCTCCTGGTATAT+TGG | 0.266652 | 1.3:+4345653 | MS.gene00449:CDS |
| TCGTCAACATCCACTGAAAT+AGG | 0.270410 | 1.3:-4345558 | None:intergenic |
| TTGATAATGGCTGCTGGTTC+TGG | 0.282121 | 1.3:-4346169 | None:intergenic |
| AGTGGTCTCAACTTGATTAA+AGG | 0.289882 | 1.3:-4345916 | None:intergenic |
| GACGATTCCCATTACATTGA+TGG | 0.304640 | 1.3:+4345576 | MS.gene00449:CDS |
| CCATCTTCAACAGGCGTAAT+CGG | 0.319857 | 1.3:-4345615 | None:intergenic |
| TAGTTCAAAGAGAATGAAAA+TGG | 0.338707 | 1.3:+4346358 | MS.gene00449:CDS |
| CCAGCTAATAACTGGAATTT+CGG | 0.341281 | 1.3:-4344949 | None:intergenic |
| TGACGAGGGATTACCTTGTT+GGG | 0.359371 | 1.3:-4346327 | None:intergenic |
| TTTGTTGAAGGGACCTCAAC+AGG | 0.365719 | 1.3:-4346065 | None:intergenic |
| GTGGTCTCAACTTGATTAAA+GGG | 0.370543 | 1.3:-4345915 | None:intergenic |
| CTGACGAGGGATTACCTTGT+TGG | 0.373906 | 1.3:-4346328 | None:intergenic |
| TCAACTTGATTAAAGGGATT+AGG | 0.374101 | 1.3:-4345909 | None:intergenic |
| ACCAACTTCTCAATCACTTC+CGG | 0.375302 | 1.3:-4345813 | None:intergenic |
| GGTTTAATCCAGCTAATAAC+TGG | 0.385422 | 1.3:-4344957 | None:intergenic |
| CCGAAATTCCAGTTATTAGC+TGG | 0.389535 | 1.3:+4344949 | MS.gene00449:CDS |
| CAACAAGGTAATCCCTCGTC+AGG | 0.403842 | 1.3:+4346329 | MS.gene00449:CDS |
| AACATGACCATCAATGTAAT+GGG | 0.405673 | 1.3:-4345583 | None:intergenic |
| AGCTCCATTCCGACATCCTC+TGG | 0.406929 | 1.3:-4346270 | None:intergenic |
| CAACATGACCATCAATGTAA+TGG | 0.430043 | 1.3:-4345584 | None:intergenic |
| TGGCGATTACTGGAGGAGTA+TGG | 0.439812 | 1.3:-4346149 | None:intergenic |
| GAAAATCGAAGAGAGTTTCA+TGG | 0.443092 | 1.3:+4341696 | MS.gene00449:CDS |
| TCCGGAAGTGATTGAGAAGT+TGG | 0.446609 | 1.3:+4345812 | MS.gene00449:CDS |
| AGGAATCTCCTTCACAAGTT+GGG | 0.446886 | 1.3:+4344796 | MS.gene00449:CDS |
| CCCACATCCCCATCTTCAAC+AGG | 0.453414 | 1.3:-4345624 | None:intergenic |
| CCGATTACGCCTGTTGAAGA+TGG | 0.453700 | 1.3:+4345615 | MS.gene00449:CDS |
| CATCTTCAACAGGCGTAATC+GGG | 0.456517 | 1.3:-4345614 | None:intergenic |
| GAGGAATCTCCTTCACAAGT+TGG | 0.477493 | 1.3:+4344795 | MS.gene00449:CDS |
| CTCACATGGCAAGTGGTGGC+TGG | 0.478796 | 1.3:+4345353 | MS.gene00449:CDS |
| CGATTACGCCTGTTGAAGAT+GGG | 0.483143 | 1.3:+4345616 | MS.gene00449:CDS |
| ACAGGAGTAGCAGCAATAGC+TGG | 0.488249 | 1.3:-4346047 | None:intergenic |
| TTCCGAGTTAGATCTTTGTC+AGG | 0.491528 | 1.3:+4341721 | MS.gene00449:CDS |
| CAATAATATTCTCAACAATC+CGG | 0.493677 | 1.3:+4345794 | MS.gene00449:CDS |
| TTCGTGGATAAATAGCTTCA+AGG | 0.494743 | 1.3:-4345424 | None:intergenic |
| TTGTTGCCTCAAGGAGAAGC+TGG | 0.494944 | 1.3:+4344858 | MS.gene00449:CDS |
| TTATCTCCTGGTATATTGGA+TGG | 0.518348 | 1.3:+4345657 | MS.gene00449:CDS |
| ACCTCCGGCTGTGTGAGTAT+AGG | 0.526743 | 1.3:-4345973 | None:intergenic |
| TTGATGCAGTCCTATTTCAG+TGG | 0.526839 | 1.3:+4345548 | MS.gene00449:intron |
| CATAGTTTGATAATGGCTGC+TGG | 0.527380 | 1.3:-4346175 | None:intergenic |
| TAGCTGGATTAAACCACCTA+AGG | 0.527680 | 1.3:+4344965 | MS.gene00449:CDS |
| GCATGAGTTCCCTCAAATCC+AGG | 0.528859 | 1.3:-4344900 | None:intergenic |
| AGACTCGTACTTTGGAGGAA+TGG | 0.532082 | 1.3:-4345453 | None:intergenic |
| AGAGAAGACTCGTACTTTGG+AGG | 0.538641 | 1.3:-4345458 | None:intergenic |
| ACTGTATCATAGTTTGATAA+TGG | 0.546801 | 1.3:-4346182 | None:intergenic |
| GACGAGGGATTACCTTGTTG+GGG | 0.547183 | 1.3:-4346326 | None:intergenic |
| ACAAGGATGATATCTTTGCT+TGG | 0.550411 | 1.3:-4344839 | None:intergenic |
| GCCTGTTGAAGATGGGGATG+TGG | 0.558484 | 1.3:+4345623 | MS.gene00449:CDS |
| TCACACAGCCGGAGGTCAGA+TGG | 0.558835 | 1.3:+4345980 | MS.gene00449:CDS |
| GGAGGAATGGAAGATATTCG+TGG | 0.560244 | 1.3:-4345440 | None:intergenic |
| GAATTCAGCCCAACTTGTGA+AGG | 0.561325 | 1.3:-4344804 | None:intergenic |
| TGAAGATGGGGATGTGGGAG+CGG | 0.563372 | 1.3:+4345629 | MS.gene00449:CDS |
| CGTCAACTATGTCTACTCAA+TGG | 0.565260 | 1.3:+4346003 | MS.gene00449:CDS |
| AGCTTCTCCTTGAGGCAACA+AGG | 0.565922 | 1.3:-4344856 | None:intergenic |
| GGAGCGGATACATTATCTCC+TGG | 0.567885 | 1.3:+4345645 | MS.gene00449:CDS |
| ACTTGATTAAAGGGATTAGG+AGG | 0.568417 | 1.3:-4345906 | None:intergenic |
| GGTTAGGTTATTCTTATCTG+AGG | 0.568521 | 1.3:+4344776 | MS.gene00449:intron |
| CTAATAACTGGAATTTCGGA+CGG | 0.568918 | 1.3:-4344945 | None:intergenic |
| TATTGCTGCTACTCCTGTTG+AGG | 0.569271 | 1.3:+4346052 | MS.gene00449:CDS |
| TTAATAGTTCCAGAGGATGT+CGG | 0.569456 | 1.3:+4346261 | MS.gene00449:CDS |
| TGTCTACTCAATGGCATCGT+AGG | 0.571059 | 1.3:+4346012 | MS.gene00449:CDS |
| AGTATTTGATGAGGATGTAG+TGG | 0.572858 | 1.3:-4345934 | None:intergenic |
| GATATTTGATCAACATCAGA+GGG | 0.578943 | 1.3:+4345391 | MS.gene00449:CDS |
| AGGATGATATCTTTGCTTGG+AGG | 0.580593 | 1.3:-4344836 | None:intergenic |
| ATATCATCCTTGTTGCCTCA+AGG | 0.583248 | 1.3:+4344849 | MS.gene00449:CDS |
| TCTTCCTATACTCACACAGC+CGG | 0.583250 | 1.3:+4345969 | MS.gene00449:CDS |
| CACTGTCACGACTATGTCGA+TGG | 0.587970 | 1.3:+4345686 | MS.gene00449:CDS |
| TGAACTATGCATCCCTGACG+AGG | 0.599293 | 1.3:-4346342 | None:intergenic |
| AAGAGCTTGATTCAGCAACA+TGG | 0.600253 | 1.3:+4346104 | MS.gene00449:CDS |
| CTGGTTCTGGCGATTACTGG+AGG | 0.602943 | 1.3:-4346156 | None:intergenic |
| TCAGAACCAGCTTCTCCTTG+AGG | 0.604428 | 1.3:-4344864 | None:intergenic |
| AGTTCCAGAGGATGTCGGAA+TGG | 0.612631 | 1.3:+4346266 | MS.gene00449:CDS |
| AGTTGACGCCATCTGACCTC+CGG | 0.616959 | 1.3:-4345988 | None:intergenic |
| TACCTGACAAAGATCTAACT+CGG | 0.627396 | 1.3:-4341723 | None:intergenic |
| TTTGAACCATCCAATATACC+AGG | 0.631062 | 1.3:-4345663 | None:intergenic |
| GAACTATGCATCCCTGACGA+GGG | 0.631209 | 1.3:-4346341 | None:intergenic |
| TGACAAAGATCTAACTCGGA+AGG | 0.633363 | 1.3:-4341719 | None:intergenic |
| CCTGTTGAAGATGGGGATGT+GGG | 0.634741 | 1.3:+4345624 | MS.gene00449:CDS |
| GCTAGATCTCACATGGCAAG+TGG | 0.640415 | 1.3:+4345346 | MS.gene00449:CDS |
| AAATGATGCATCATGCTGAA+AGG | 0.642980 | 1.3:-4346300 | None:intergenic |
| GCATCATTTCAGCCCCAACA+AGG | 0.644422 | 1.3:+4346314 | MS.gene00449:CDS |
| AGATATTTGATCAACATCAG+AGG | 0.644462 | 1.3:+4345390 | MS.gene00449:CDS |
| AGATCTCACATGGCAAGTGG+TGG | 0.645516 | 1.3:+4345349 | MS.gene00449:CDS |
| TCCTATACTCACACAGCCGG+AGG | 0.650386 | 1.3:+4345972 | MS.gene00449:CDS |
| AGATCGTGCTAGATCTCACA+TGG | 0.650447 | 1.3:+4345339 | MS.gene00449:intron |
| TTAGTGAAGAGCAGTGAACA+TGG | 0.653142 | 1.3:+4345747 | MS.gene00449:CDS |
| AACAAGGTAATCCCTCGTCA+GGG | 0.664383 | 1.3:+4346330 | MS.gene00449:CDS |
| GATTACGCCTGTTGAAGATG+GGG | 0.664481 | 1.3:+4345617 | MS.gene00449:CDS |
| GCACAGTATGCACAAAACAC+CGG | 0.673863 | 1.3:+4345858 | MS.gene00449:CDS |
| TGTGTGAGTATAGGAAGAAG+TGG | 0.682691 | 1.3:-4345964 | None:intergenic |
| GCGGTGTGTGAAAATATGCG+TGG | 0.706081 | 1.3:+4341668 | None:intergenic |
| AGCTTGATTCAGCAACATGG+AGG | 0.714964 | 1.3:+4346107 | MS.gene00449:CDS |
| TGAGTTCCCTCAAATCCAGG+AGG | 0.756506 | 1.3:-4344897 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAAACTAATTCTAATA+TGG | - | chr1.3:4342746-4342765 | None:intergenic | 10.0% |
| !! | GATAATATTAATAATATATG+TGG | - | chr1.3:4344306-4344325 | None:intergenic | 10.0% |
| !! | TTTCTTATTCAAATTATTAT+GGG | - | chr1.3:4344090-4344109 | None:intergenic | 10.0% |
| !! | AAAAAAAGAAATATCAAACA+AGG | - | chr1.3:4345486-4345505 | None:intergenic | 15.0% |
| !! | CTTTCTTATTCAAATTATTA+TGG | - | chr1.3:4344091-4344110 | None:intergenic | 15.0% |
| !! | GAAGAAATATGAAAAAATTA+GGG | - | chr1.3:4341815-4341834 | None:intergenic | 15.0% |
| !! | TAATATTTATATTTCAACGT+TGG | + | chr1.3:4345033-4345052 | MS.gene00449:intron | 15.0% |
| !! | TGAAGAAATATGAAAAAATT+AGG | - | chr1.3:4341816-4341835 | None:intergenic | 15.0% |
| !! | TTTAAAAATGAATCGATTAT+TGG | - | chr1.3:4341792-4341811 | None:intergenic | 15.0% |
| !! | TTTCTATACAATAAAATACA+TGG | - | chr1.3:4342372-4342391 | None:intergenic | 15.0% |
| !!! | AAAAAAATAACATTAGTTTC+AGG | + | chr1.3:4343200-4343219 | MS.gene00449:intron | 15.0% |
| !!! | TGAAACTAATGTTATTTTTT+TGG | - | chr1.3:4343201-4343220 | None:intergenic | 15.0% |
| !! | AACAAATGTCTAATCATAAA+AGG | - | chr1.3:4342845-4342864 | None:intergenic | 20.0% |
| !! | AGAATATTATTGAGTAATTC+AGG | - | chr1.3:4345786-4345805 | None:intergenic | 20.0% |
| !! | ATTATGGGTAATCATAATAA+AGG | - | chr1.3:4344075-4344094 | None:intergenic | 20.0% |
| !! | ATTGAAAAATGCAACTAAAT+TGG | - | chr1.3:4343250-4343269 | None:intergenic | 20.0% |
| !! | GAACTATTAAAAAAGATACA+AGG | - | chr1.3:4346251-4346270 | None:intergenic | 20.0% |
| !! | TATAACTACAAAAATACCTT+AGG | - | chr1.3:4344984-4345003 | None:intergenic | 20.0% |
| !! | TATCATAACTCGAAAAAAAA+AGG | + | chr1.3:4345249-4345268 | MS.gene00449:intron | 20.0% |
| !! | TTTATGATTATTGTAGACTA+GGG | - | chr1.3:4343968-4343987 | None:intergenic | 20.0% |
| !!! | CTTTCTGTTTTTTTTGTTTT+CGG | + | chr1.3:4342482-4342501 | MS.gene00449:intron | 20.0% |
| !!! | GATTTCTTTATTTAAACTCA+CGG | - | chr1.3:4343420-4343439 | None:intergenic | 20.0% |
| !!! | TAATGTACTAAAAAAGTGTA+TGG | - | chr1.3:4342269-4342288 | None:intergenic | 20.0% |
| !!! | TATGATTAGACATTTGTTAA+AGG | + | chr1.3:4342847-4342866 | MS.gene00449:intron | 20.0% |
| !!! | TTTTATGATTATTGTAGACT+AGG | - | chr1.3:4343969-4343988 | None:intergenic | 20.0% |
| ! | AAAACTAGTATTATCAATGG+TGG | - | chr1.3:4343033-4343052 | None:intergenic | 25.0% |
| ! | AAATCTTATTCCACTAAGTA+GGG | - | chr1.3:4342318-4342337 | None:intergenic | 25.0% |
| ! | AAGAAGTTGCAATTATATTG+CGG | + | chr1.3:4342447-4342466 | MS.gene00449:intron | 25.0% |
| ! | AAGGAAGTTAAGATGTATTT+GGG | + | chr1.3:4342083-4342102 | MS.gene00449:intron | 25.0% |
| ! | AAGTGAAAACATCAGATATT+CGG | - | chr1.3:4343330-4343349 | None:intergenic | 25.0% |
| ! | AATATTACTGAAGATGACTA+TGG | - | chr1.3:4345020-4345039 | None:intergenic | 25.0% |
| ! | AATTTACATGCAAAGCTAAA+AGG | - | chr1.3:4341903-4341922 | None:intergenic | 25.0% |
| ! | ACTAAAATATGACTGAAAGA+TGG | - | chr1.3:4344379-4344398 | None:intergenic | 25.0% |
| ! | ACTGTATCATAGTTTGATAA+TGG | - | chr1.3:4346185-4346204 | None:intergenic | 25.0% |
| ! | ATCCTTACTAACAGTAATAT+CGG | - | chr1.3:4343462-4343481 | None:intergenic | 25.0% |
| ! | ATGCTGAAGATATTTATCAA+AGG | - | chr1.3:4342704-4342723 | None:intergenic | 25.0% |
| ! | CAAAATGGCTATATTTATTC+TGG | + | chr1.3:4344183-4344202 | MS.gene00449:intron | 25.0% |
| ! | CAATAATATTCTCAACAATC+CGG | + | chr1.3:4345794-4345813 | MS.gene00449:CDS | 25.0% |
| ! | GTACTTTATAATGAACATCT+GGG | - | chr1.3:4344706-4344725 | None:intergenic | 25.0% |
| ! | TAAGGAAGTTAAGATGTATT+TGG | + | chr1.3:4342082-4342101 | MS.gene00449:intron | 25.0% |
| ! | TAGTTCAAAGAGAATGAAAA+TGG | + | chr1.3:4346358-4346377 | MS.gene00449:CDS | 25.0% |
| ! | TATCTCTAGTATGAATCTTA+TGG | + | chr1.3:4344025-4344044 | MS.gene00449:intron | 25.0% |
| ! | TGGAAAACTAGTATTATCAA+TGG | - | chr1.3:4343036-4343055 | None:intergenic | 25.0% |
| ! | TGTACTTTATAATGAACATC+TGG | - | chr1.3:4344707-4344726 | None:intergenic | 25.0% |
| ! | TTAGATGGTAAATGGTTTAA+TGG | + | chr1.3:4342524-4342543 | MS.gene00449:intron | 25.0% |
| ! | TTATGATTATTGTAGACTAG+GGG | - | chr1.3:4343967-4343986 | None:intergenic | 25.0% |
| ! | TTCAAAGTAACTTCATTGAA+TGG | - | chr1.3:4342799-4342818 | None:intergenic | 25.0% |
| ! | TTTGAATTGAGACTTATGAT+GGG | + | chr1.3:4342403-4342422 | MS.gene00449:intron | 25.0% |
| !! | AGTTTACATCTTTTGTTGAA+GGG | - | chr1.3:4346079-4346098 | None:intergenic | 25.0% |
| !! | GTAATTGCTTATTGTTTTCT+TGG | + | chr1.3:4343158-4343177 | MS.gene00449:intron | 25.0% |
| !! | TAGTTTACATCTTTTGTTGA+AGG | - | chr1.3:4346080-4346099 | None:intergenic | 25.0% |
| !! | TGTTCTTTTTCTGTTTCAAA+AGG | + | chr1.3:4343548-4343567 | MS.gene00449:intron | 25.0% |
| !! | TTTGAGAATTTTTATGCTGT+TGG | + | chr1.3:4343271-4343290 | MS.gene00449:intron | 25.0% |
| !! | TTTTAATCAGGATCTTAACT+TGG | + | chr1.3:4343861-4343880 | MS.gene00449:intron | 25.0% |
| !! | TTTTGAATTGAGACTTATGA+TGG | + | chr1.3:4342402-4342421 | MS.gene00449:intron | 25.0% |
| !!! | AAAAACATTTGATGATGATC+CGG | - | chr1.3:4345880-4345899 | None:intergenic | 25.0% |
| !!! | ATCTGTTTTCACTTTTAATC+AGG | + | chr1.3:4343849-4343868 | MS.gene00449:intron | 25.0% |
| !!! | ATCTTTCAGTCATATTTTAG+TGG | + | chr1.3:4344378-4344397 | MS.gene00449:intron | 25.0% |
| !!! | ATCTTTTTTAATAGTTCCAG+AGG | + | chr1.3:4346254-4346273 | MS.gene00449:CDS | 25.0% |
| !!! | ATTTGATGATGAATTACTTG+TGG | + | chr1.3:4342119-4342138 | MS.gene00449:intron | 25.0% |
| !!! | GGTGGTTACTTTTTTTTAAT+AGG | - | chr1.3:4344619-4344638 | None:intergenic | 25.0% |
| !!! | TTTTGAAAAAGCTTGCAATT+TGG | + | chr1.3:4343818-4343837 | MS.gene00449:intron | 25.0% |
| AAAAGTAGACTACACTGATA+AGG | + | chr1.3:4342064-4342083 | MS.gene00449:intron | 30.0% | |
| AAAATGCAACTAAATTGGAC+AGG | - | chr1.3:4343245-4343264 | None:intergenic | 30.0% | |
| AAATGCAACTAAATTGGACA+GGG | - | chr1.3:4343244-4343263 | None:intergenic | 30.0% | |
| AACATGACCATCAATGTAAT+GGG | - | chr1.3:4345586-4345605 | None:intergenic | 30.0% | |
| AACTACAAAAATACCTTAGG+TGG | - | chr1.3:4344981-4345000 | None:intergenic | 30.0% | |
| AATTTCCTGATTAATCCGAT+CGG | + | chr1.3:4341876-4341895 | MS.gene00449:intron | 30.0% | |
| ACAGTATGCCAATATATCAT+CGG | + | chr1.3:4345175-4345194 | MS.gene00449:intron | 30.0% | |
| AGATATTTGATCAACATCAG+AGG | + | chr1.3:4345390-4345409 | MS.gene00449:CDS | 30.0% | |
| AGCAATTACTTTACTAGAAC+AGG | - | chr1.3:4343147-4343166 | None:intergenic | 30.0% | |
| AGTGAAAACATCAGATATTC+GGG | - | chr1.3:4343329-4343348 | None:intergenic | 30.0% | |
| CAAATCTTATTCCACTAAGT+AGG | - | chr1.3:4342319-4342338 | None:intergenic | 30.0% | |
| CAGCATATATGCAAAAATGT+AGG | + | chr1.3:4342718-4342737 | MS.gene00449:intron | 30.0% | |
| CATTTATTGTGCACTCAAAA+TGG | + | chr1.3:4344168-4344187 | MS.gene00449:intron | 30.0% | |
| CGATTATTGGAAGTGATTAT+TGG | - | chr1.3:4341779-4341798 | None:intergenic | 30.0% | |
| CTACTTAGTGGAATAAGATT+TGG | + | chr1.3:4342317-4342336 | MS.gene00449:intron | 30.0% | |
| GAAAAAACCGCTATATACAT+AGG | - | chr1.3:4345127-4345146 | None:intergenic | 30.0% | |
| GAATTCGTATGAACAAAACA+AGG | - | chr1.3:4343353-4343372 | None:intergenic | 30.0% | |
| GATATTTGATCAACATCAGA+GGG | + | chr1.3:4345391-4345410 | MS.gene00449:CDS | 30.0% | |
| GATTAGATGATTGATGAAGT+TGG | - | chr1.3:4341846-4341865 | None:intergenic | 30.0% | |
| GATTCATACTAGAGATACTT+AGG | - | chr1.3:4344022-4344041 | None:intergenic | 30.0% | |
| GGATTAGATTAGATGGTAAA+TGG | + | chr1.3:4342516-4342535 | MS.gene00449:intron | 30.0% | |
| GTAAAGTTGACAGAAATTCT+TGG | + | chr1.3:4343670-4343689 | MS.gene00449:intron | 30.0% | |
| TAATATCGGCGAAAACAAAA+GGG | - | chr1.3:4343448-4343467 | None:intergenic | 30.0% | |
| TACATTATCTCCTGGTATAT+TGG | + | chr1.3:4345653-4345672 | MS.gene00449:CDS | 30.0% | |
| TCAACTTGATTAAAGGGATT+AGG | - | chr1.3:4345912-4345931 | None:intergenic | 30.0% | |
| TCACAGCACAAAGAAATAAA+CGG | - | chr1.3:4344504-4344523 | None:intergenic | 30.0% | |
| TCTAGTATGAATCTTATGGA+TGG | + | chr1.3:4344029-4344048 | MS.gene00449:intron | 30.0% | |
| TGTCAAACCTATGTATATAG+CGG | + | chr1.3:4345117-4345136 | MS.gene00449:intron | 30.0% | |
| TTGTAGGTTATAAGTGTGTT+TGG | + | chr1.3:4342583-4342602 | MS.gene00449:intron | 30.0% | |
| TTGTATTATCACTATGTACG+TGG | + | chr1.3:4343103-4343122 | MS.gene00449:intron | 30.0% | |
| ! | AGTTAAGATGTATTTGGGAT+TGG | + | chr1.3:4342088-4342107 | MS.gene00449:intron | 30.0% |
| ! | GTTCATTGGATTAGATTAGA+TGG | + | chr1.3:4342509-4342528 | MS.gene00449:intron | 30.0% |
| ! | GTTGTCTGAAGTGAATTAAT+TGG | - | chr1.3:4343704-4343723 | None:intergenic | 30.0% |
| ! | TACTGTTAGTAAGGATGTTT+TGG | + | chr1.3:4343466-4343485 | MS.gene00449:intron | 30.0% |
| ! | TTAATCAGGAAATTTTCCTC+TGG | - | chr1.3:4341870-4341889 | None:intergenic | 30.0% |
| ! | TTGTCAAATATTGGCTATGA+CGG | + | chr1.3:4342892-4342911 | MS.gene00449:intron | 30.0% |
| !! | ACAAAGAAATAAACGGGTTT+TGG | - | chr1.3:4344497-4344516 | None:intergenic | 30.0% |
| !! | CATATTACAAGAGTGCTAAA+AGG | + | chr1.3:4344725-4344744 | MS.gene00449:intron | 30.0% |
| !! | GGATGAAAAAGTATTTGATG+AGG | - | chr1.3:4345946-4345965 | None:intergenic | 30.0% |
| !! | TTAGCTTTGCATGTAAATTC+AGG | + | chr1.3:4341904-4341923 | MS.gene00449:intron | 30.0% |
| !!! | ACTAGTTTTCCATTTCTTCT+TGG | + | chr1.3:4343044-4343063 | MS.gene00449:intron | 30.0% |
| !!! | CTCTGAAGTATGAATGTTTT+TGG | + | chr1.3:4344138-4344157 | MS.gene00449:intron | 30.0% |
| !!! | GTACACAATTTTAGAGCAAA+AGG | + | chr1.3:4346203-4346222 | MS.gene00449:CDS | 30.0% |
| !!! | TCTGTTTTTTTTGTTTTCGG+TGG | + | chr1.3:4342485-4342504 | MS.gene00449:intron | 30.0% |
| AAATGATGCATCATGCTGAA+AGG | - | chr1.3:4346303-4346322 | None:intergenic | 35.0% | |
| AACCCAGATAAATCCTCATT+AGG | - | chr1.3:4342157-4342176 | None:intergenic | 35.0% | |
| AAGAACACACCAAGAAGAAA+TGG | - | chr1.3:4343056-4343075 | None:intergenic | 35.0% | |
| AATGCAGAGTTATAGAGAGA+AGG | + | chr1.3:4343899-4343918 | MS.gene00449:intron | 35.0% | |
| ACAAAAATATAGCGCGTGTT+TGG | - | chr1.3:4342661-4342680 | None:intergenic | 35.0% | |
| ACAAGGATGATATCTTTGCT+TGG | - | chr1.3:4344842-4344861 | None:intergenic | 35.0% | |
| ACCCAGATAAATCCTCATTA+GGG | - | chr1.3:4342156-4342175 | None:intergenic | 35.0% | |
| ACCTAACCTGTTCAACAAAA+AGG | - | chr1.3:4344764-4344783 | None:intergenic | 35.0% | |
| ACTTGAAAACACACTAACAC+CGG | - | chr1.3:4343394-4343413 | None:intergenic | 35.0% | |
| ACTTGATTAAAGGGATTAGG+AGG | - | chr1.3:4345909-4345928 | None:intergenic | 35.0% | |
| AGTATGCCAATATATCATCG+GGG | + | chr1.3:4345177-4345196 | MS.gene00449:intron | 35.0% | |
| AGTATTTGATGAGGATGTAG+TGG | - | chr1.3:4345937-4345956 | None:intergenic | 35.0% | |
| AGTGGTCTCAACTTGATTAA+AGG | - | chr1.3:4345919-4345938 | None:intergenic | 35.0% | |
| AGTTGACAGAAATTCTTGGT+TGG | + | chr1.3:4343674-4343693 | MS.gene00449:intron | 35.0% | |
| ATACTAGAGATACTTAGGCT+AGG | - | chr1.3:4344017-4344036 | None:intergenic | 35.0% | |
| ATCAATCATCTAATCTCCAG+AGG | + | chr1.3:4341851-4341870 | MS.gene00449:intron | 35.0% | |
| ATGCAGAGTTATAGAGAGAA+GGG | + | chr1.3:4343900-4343919 | MS.gene00449:intron | 35.0% | |
| CAACATGACCATCAATGTAA+TGG | - | chr1.3:4345587-4345606 | None:intergenic | 35.0% | |
| CACAGCACAAAGAAATAAAC+GGG | - | chr1.3:4344503-4344522 | None:intergenic | 35.0% | |
| CAGTATGCCAATATATCATC+GGG | + | chr1.3:4345176-4345195 | MS.gene00449:intron | 35.0% | |
| CCAGCTAATAACTGGAATTT+CGG | - | chr1.3:4344952-4344971 | None:intergenic | 35.0% | |
| CTAATAACTGGAATTTCGGA+CGG | - | chr1.3:4344948-4344967 | None:intergenic | 35.0% | |
| CTGTCAAAAATTGGCTATGA+TGG | - | chr1.3:4342953-4342972 | None:intergenic | 35.0% | |
| CTTAGTGGAATAAGATTTGG+TGG | + | chr1.3:4342320-4342339 | MS.gene00449:intron | 35.0% | |
| GAAAATCGAAGAGAGTTTCA+TGG | + | chr1.3:4341696-4341715 | MS.gene00449:CDS | 35.0% | |
| GAATTTGAATCTCCCTAATG+AGG | + | chr1.3:4342141-4342160 | MS.gene00449:intron | 35.0% | |
| GGCTGAATATAAGTTGCAAT+TGG | + | chr1.3:4343738-4343757 | MS.gene00449:intron | 35.0% | |
| GGTTAGGTTATTCTTATCTG+AGG | + | chr1.3:4344776-4344795 | MS.gene00449:intron | 35.0% | |
| GGTTTAATCCAGCTAATAAC+TGG | - | chr1.3:4344960-4344979 | None:intergenic | 35.0% | |
| GTAATATCGGCGAAAACAAA+AGG | - | chr1.3:4343449-4343468 | None:intergenic | 35.0% | |
| GTGGTCTCAACTTGATTAAA+GGG | - | chr1.3:4345918-4345937 | None:intergenic | 35.0% | |
| TAAAGGTTTGCCACAATATC+AGG | + | chr1.3:4342864-4342883 | MS.gene00449:intron | 35.0% | |
| TACATACCCCGATGATATAT+TGG | - | chr1.3:4345186-4345205 | None:intergenic | 35.0% | |
| TACCTGACAAAGATCTAACT+CGG | - | chr1.3:4341726-4341745 | None:intergenic | 35.0% | |
| TATAACTCTGCATTGAGACT+GGG | - | chr1.3:4343893-4343912 | None:intergenic | 35.0% | |
| TCCCTAATGAGGATTTATCT+GGG | + | chr1.3:4342152-4342171 | MS.gene00449:intron | 35.0% | |
| TTAATAGTTCCAGAGGATGT+CGG | + | chr1.3:4346261-4346280 | MS.gene00449:CDS | 35.0% | |
| TTATCTCCTGGTATATTGGA+TGG | + | chr1.3:4345657-4345676 | MS.gene00449:CDS | 35.0% | |
| TTCGTGGATAAATAGCTTCA+AGG | - | chr1.3:4345427-4345446 | None:intergenic | 35.0% | |
| TTGCAACTTCTTGAAAGACT+AGG | - | chr1.3:4342439-4342458 | None:intergenic | 35.0% | |
| ! | ATTTTACCTCCTGGATTTGA+GGG | + | chr1.3:4344891-4344910 | MS.gene00449:CDS | 35.0% |
| ! | CAAGTCAGTGTGATATTTTC+TGG | + | chr1.3:4343613-4343632 | MS.gene00449:intron | 35.0% |
| ! | CAGAAAATATCACACTGACT+TGG | - | chr1.3:4343615-4343634 | None:intergenic | 35.0% |
| ! | CATAGCCAATTTTTGACAGA+TGG | + | chr1.3:4342954-4342973 | MS.gene00449:intron | 35.0% |
| ! | CTAGTATTATCAATGGTGGA+TGG | - | chr1.3:4343029-4343048 | None:intergenic | 35.0% |
| ! | CTGTTTCCTTTTTGTTGAAC+AGG | + | chr1.3:4344755-4344774 | MS.gene00449:intron | 35.0% |
| ! | TATTTTACCTCCTGGATTTG+AGG | + | chr1.3:4344890-4344909 | MS.gene00449:CDS | 35.0% |
| ! | TCCTTTTTGTTGAACAGGTT+AGG | + | chr1.3:4344760-4344779 | MS.gene00449:intron | 35.0% |
| ! | TCTGATGATATTTTACCTCC+TGG | + | chr1.3:4344882-4344901 | MS.gene00449:CDS | 35.0% |
| !! | ATACAAGGCTTCGTTGTTTT+TGG | - | chr1.3:4346236-4346255 | None:intergenic | 35.0% |
| !!! | TTTTGGTGTTCAAACAGTCT+TGG | + | chr1.3:4343483-4343502 | MS.gene00449:intron | 35.0% |
| AAATCTGCGACAAAACACCA+CGG | - | chr1.3:4342985-4343004 | None:intergenic | 40.0% | |
| AAGAGCTTGATTCAGCAACA+TGG | + | chr1.3:4346104-4346123 | MS.gene00449:CDS | 40.0% | |
| AATTTGCCCAACAAGAGGAT+CGG | - | chr1.3:4343926-4343945 | None:intergenic | 40.0% | |
| ACCAACTTCTCAATCACTTC+CGG | - | chr1.3:4345816-4345835 | None:intergenic | 40.0% | |
| ACGTTGGTGCAAGAAAGTAA+AGG | + | chr1.3:4345049-4345068 | MS.gene00449:intron | 40.0% | |
| AGGAATCTCCTTCACAAGTT+GGG | + | chr1.3:4344796-4344815 | MS.gene00449:CDS | 40.0% | |
| AGGATGATATCTTTGCTTGG+AGG | - | chr1.3:4344839-4344858 | None:intergenic | 40.0% | |
| ATAACTCTGCATTGAGACTG+GGG | - | chr1.3:4343892-4343911 | None:intergenic | 40.0% | |
| ATATCATCCTTGTTGCCTCA+AGG | + | chr1.3:4344849-4344868 | MS.gene00449:CDS | 40.0% | |
| ATATTCAGCCACACTATGAC+AGG | - | chr1.3:4343728-4343747 | None:intergenic | 40.0% | |
| CCGAAATTCCAGTTATTAGC+TGG | + | chr1.3:4344949-4344968 | MS.gene00449:CDS | 40.0% | |
| CGCCGATATTACTGTTAGTA+AGG | + | chr1.3:4343457-4343476 | MS.gene00449:intron | 40.0% | |
| CGTCAACTATGTCTACTCAA+TGG | + | chr1.3:4346003-4346022 | MS.gene00449:CDS | 40.0% | |
| CTATAACTCTGCATTGAGAC+TGG | - | chr1.3:4343894-4343913 | None:intergenic | 40.0% | |
| CTCCCTAATGAGGATTTATC+TGG | + | chr1.3:4342151-4342170 | MS.gene00449:intron | 40.0% | |
| CTCCTCCATCTGTCAAAAAT+TGG | - | chr1.3:4342962-4342981 | None:intergenic | 40.0% | |
| CTGAAATAGGACTGCATCAA+AGG | - | chr1.3:4345548-4345567 | None:intergenic | 40.0% | |
| CTGTTGCTCATGTGTTATAC+CGG | + | chr1.3:4343372-4343391 | MS.gene00449:intron | 40.0% | |
| CTTATTCCACTAAGTAGGGT+CGG | - | chr1.3:4342314-4342333 | None:intergenic | 40.0% | |
| GACGATTCCCATTACATTGA+TGG | + | chr1.3:4345576-4345595 | MS.gene00449:CDS | 40.0% | |
| GTCTTGTGCTGTGTAATCTT+TGG | + | chr1.3:4342198-4342217 | MS.gene00449:intron | 40.0% | |
| TAGATTCTCAAGTGCATGCA+TGG | - | chr1.3:4344640-4344659 | None:intergenic | 40.0% | |
| TAGCTGGATTAAACCACCTA+AGG | + | chr1.3:4344965-4344984 | MS.gene00449:CDS | 40.0% | |
| TCATCGGGGTATGTATTTCT+AGG | + | chr1.3:4345191-4345210 | MS.gene00449:intron | 40.0% | |
| TCGTCAACATCCACTGAAAT+AGG | - | chr1.3:4345561-4345580 | None:intergenic | 40.0% | |
| TGACAAAGATCTAACTCGGA+AGG | - | chr1.3:4341722-4341741 | None:intergenic | 40.0% | |
| TGGTTGTCAAAAAATGCGCA+CGG | - | chr1.3:4342933-4342952 | None:intergenic | 40.0% | |
| TGTGTGAGTATAGGAAGAAG+TGG | - | chr1.3:4345967-4345986 | None:intergenic | 40.0% | |
| TGTTCTTGTGGTTGTTAACC+AGG | + | chr1.3:4343069-4343088 | MS.gene00449:intron | 40.0% | |
| TTAGTGAAGAGCAGTGAACA+TGG | + | chr1.3:4345747-4345766 | MS.gene00449:CDS | 40.0% | |
| TTCCGAGTTAGATCTTTGTC+AGG | + | chr1.3:4341721-4341740 | MS.gene00449:CDS | 40.0% | |
| TTGATGCAGTCCTATTTCAG+TGG | + | chr1.3:4345548-4345567 | MS.gene00449:intron | 40.0% | |
| ! | AGCCAATTTTTGACAGATGG+AGG | + | chr1.3:4342957-4342976 | MS.gene00449:intron | 40.0% |
| ! | CAGGCACTGTTGTCAAATAT+TGG | + | chr1.3:4342883-4342902 | MS.gene00449:intron | 40.0% |
| ! | CTTTGTGCTGTGAGTTTTTG+TGG | + | chr1.3:4344511-4344530 | MS.gene00449:intron | 40.0% |
| ! | GGTCTTTGTTGTCTAACACT+GGG | + | chr1.3:4343759-4343778 | MS.gene00449:intron | 40.0% |
| ! | TGGTCTTTGTTGTCTAACAC+TGG | + | chr1.3:4343758-4343777 | MS.gene00449:intron | 40.0% |
| ! | TTCTTCTTGGTGTGTTCTTG+TGG | + | chr1.3:4343057-4343076 | MS.gene00449:intron | 40.0% |
| ! | TTGTTTTCGGTGGTGTTCAT+TGG | + | chr1.3:4342495-4342514 | MS.gene00449:intron | 40.0% |
| ! | TTTGTTGTCTAACACTGGGA+TGG | + | chr1.3:4343763-4343782 | MS.gene00449:intron | 40.0% |
| !! | ATTTTCTGGAGATGTATCGC+TGG | + | chr1.3:4343627-4343646 | MS.gene00449:intron | 40.0% |
| !! | CATAGTTTGATAATGGCTGC+TGG | - | chr1.3:4346178-4346197 | None:intergenic | 40.0% |
| !! | GTATTATCAATGGTGGATGG+TGG | - | chr1.3:4343026-4343045 | None:intergenic | 40.0% |
| !! | TCGTTAATTTGCCCAACAAG+AGG | - | chr1.3:4343931-4343950 | None:intergenic | 40.0% |
| !!! | AAACGGGTTTTGGATGAAAG+TGG | - | chr1.3:4344487-4344506 | None:intergenic | 40.0% |
| AACAAGGTAATCCCTCGTCA+GGG | + | chr1.3:4346330-4346349 | MS.gene00449:CDS | 45.0% | |
| AAGGTCCGATCGGATTAATC+AGG | - | chr1.3:4341884-4341903 | None:intergenic | 45.0% | |
| AAGGTCTCGGGATCTGATTA+GGG | + | chr1.3:4343793-4343812 | MS.gene00449:intron | 45.0% | |
| AATACAAAGCACAAGCAGCC+TGG | - | chr1.3:4343090-4343109 | None:intergenic | 45.0% | |
| AGACAACACCTGTCATAGTG+TGG | + | chr1.3:4343717-4343736 | MS.gene00449:intron | 45.0% | |
| AGAGAAGACTCGTACTTTGG+AGG | - | chr1.3:4345461-4345480 | None:intergenic | 45.0% | |
| AGATCGTGCTAGATCTCACA+TGG | + | chr1.3:4345339-4345358 | MS.gene00449:intron | 45.0% | |
| AGCTTGATTCAGCAACATGG+AGG | + | chr1.3:4346107-4346126 | MS.gene00449:CDS | 45.0% | |
| ATCTCAGCCACTTCCAACAT+GGG | + | chr1.3:4343585-4343604 | MS.gene00449:intron | 45.0% | |
| ATTCTCAAGTGCATGCATGG+TGG | - | chr1.3:4344637-4344656 | None:intergenic | 45.0% | |
| CATCTTCAACAGGCGTAATC+GGG | - | chr1.3:4345617-4345636 | None:intergenic | 45.0% | |
| CCATCTTCAACAGGCGTAAT+CGG | - | chr1.3:4345618-4345637 | None:intergenic | 45.0% | |
| CGATTACGCCTGTTGAAGAT+GGG | + | chr1.3:4345616-4345635 | MS.gene00449:CDS | 45.0% | |
| GAATTCAGCCCAACTTGTGA+AGG | - | chr1.3:4344807-4344826 | None:intergenic | 45.0% | |
| GACAACAGTGCCTGATATTG+TGG | - | chr1.3:4342877-4342896 | None:intergenic | 45.0% | |
| GAGGAATCTCCTTCACAAGT+TGG | + | chr1.3:4344795-4344814 | MS.gene00449:CDS | 45.0% | |
| GATTACGCCTGTTGAAGATG+GGG | + | chr1.3:4345617-4345636 | MS.gene00449:CDS | 45.0% | |
| GCAAAGCTAAAAGGTCCGAT+CGG | - | chr1.3:4341894-4341913 | None:intergenic | 45.0% | |
| GCAAGAGAAGACTCGTACTT+TGG | - | chr1.3:4345464-4345483 | None:intergenic | 45.0% | |
| GCACAGTATGCACAAAACAC+CGG | + | chr1.3:4345858-4345877 | MS.gene00449:CDS | 45.0% | |
| GGAGGAATGGAAGATATTCG+TGG | - | chr1.3:4345443-4345462 | None:intergenic | 45.0% | |
| GTATGAGCTACTGCTCTTGT+AGG | + | chr1.3:4342567-4342586 | MS.gene00449:intron | 45.0% | |
| TAACTCTGCATTGAGACTGG+GGG | - | chr1.3:4343891-4343910 | None:intergenic | 45.0% | |
| TATTGCTGCTACTCCTGTTG+AGG | + | chr1.3:4346052-4346071 | MS.gene00449:CDS | 45.0% | |
| TCCGGAAGTGATTGAGAAGT+TGG | + | chr1.3:4345812-4345831 | MS.gene00449:CDS | 45.0% | |
| TCTTCCTATACTCACACAGC+CGG | + | chr1.3:4345969-4345988 | MS.gene00449:CDS | 45.0% | |
| TGACGAGGGATTACCTTGTT+GGG | - | chr1.3:4346330-4346349 | None:intergenic | 45.0% | |
| TGCACTCTTTGTGCTTGGTT+AGG | + | chr1.3:4344568-4344587 | MS.gene00449:intron | 45.0% | |
| TGTCTACTCAATGGCATCGT+AGG | + | chr1.3:4346012-4346031 | MS.gene00449:CDS | 45.0% | |
| TTCCTTGCACTCTTTGTGCT+TGG | + | chr1.3:4344563-4344582 | MS.gene00449:intron | 45.0% | |
| TTTGTTGAAGGGACCTCAAC+AGG | - | chr1.3:4346068-4346087 | None:intergenic | 45.0% | |
| ! | AACCAAGCACAAAGAGTGCA+AGG | - | chr1.3:4344568-4344587 | None:intergenic | 45.0% |
| ! | AGACTCGTACTTTGGAGGAA+TGG | - | chr1.3:4345456-4345475 | None:intergenic | 45.0% |
| ! | AGCACAAAGAGTGCAAGGAA+AGG | - | chr1.3:4344563-4344582 | None:intergenic | 45.0% |
| ! | CAGATATTCGGGTTATGCAG+AGG | - | chr1.3:4343318-4343337 | None:intergenic | 45.0% |
| ! | GCAATAGCTGGACTGATTTC+AGG | - | chr1.3:4346038-4346057 | None:intergenic | 45.0% |
| !! | TTGATAATGGCTGCTGGTTC+TGG | - | chr1.3:4346172-4346191 | None:intergenic | 45.0% |
| !! | TTTCAGGTTCCAACGTCATG+TGG | + | chr1.3:4343216-4343235 | MS.gene00449:intron | 45.0% |
| !! | AAAAAAAAAAAAAAAAAAAC+TGG | + | chr1.3:4342036-4342055 | MS.gene00449:intron | 5.0% |
| !! | TTTATTTATATATATTATCT+TGG | + | chr1.3:4344593-4344612 | MS.gene00449:intron | 5.0% |
| ACAGGAGTAGCAGCAATAGC+TGG | - | chr1.3:4346050-4346069 | None:intergenic | 50.0% | |
| AGATCTCACATGGCAAGTGG+TGG | + | chr1.3:4345349-4345368 | MS.gene00449:CDS | 50.0% | |
| AGCTTCTCCTTGAGGCAACA+AGG | - | chr1.3:4344859-4344878 | None:intergenic | 50.0% | |
| AGTTCCAGAGGATGTCGGAA+TGG | + | chr1.3:4346266-4346285 | MS.gene00449:CDS | 50.0% | |
| ATGCACACCAATGCCAATGC+AGG | + | chr1.3:4342634-4342653 | MS.gene00449:intron | 50.0% | |
| ATGTAGCCGACCCTACTTAG+TGG | + | chr1.3:4342305-4342324 | MS.gene00449:intron | 50.0% | |
| CAACAAGGTAATCCCTCGTC+AGG | + | chr1.3:4346329-4346348 | MS.gene00449:CDS | 50.0% | |
| CACTGTCACGACTATGTCGA+TGG | + | chr1.3:4345686-4345705 | MS.gene00449:CDS | 50.0% | |
| CCGATTACGCCTGTTGAAGA+TGG | + | chr1.3:4345615-4345634 | MS.gene00449:CDS | 50.0% | |
| CCTGTTGAAGATGGGGATGT+GGG | + | chr1.3:4345624-4345643 | MS.gene00449:CDS | 50.0% | |
| CTGACGAGGGATTACCTTGT+TGG | - | chr1.3:4346331-4346350 | None:intergenic | 50.0% | |
| GAACTATGCATCCCTGACGA+GGG | - | chr1.3:4346344-4346363 | None:intergenic | 50.0% | |
| GAAGGTCTCGGGATCTGATT+AGG | + | chr1.3:4343792-4343811 | MS.gene00449:intron | 50.0% | |
| GACGAGGGATTACCTTGTTG+GGG | - | chr1.3:4346329-4346348 | None:intergenic | 50.0% | |
| GATCTCAGCCACTTCCAACA+TGG | + | chr1.3:4343584-4343603 | MS.gene00449:intron | 50.0% | |
| GCATCATTTCAGCCCCAACA+AGG | + | chr1.3:4346314-4346333 | MS.gene00449:CDS | 50.0% | |
| GCATGAGTTCCCTCAAATCC+AGG | - | chr1.3:4344903-4344922 | None:intergenic | 50.0% | |
| GCTAGATCTCACATGGCAAG+TGG | + | chr1.3:4345346-4345365 | MS.gene00449:CDS | 50.0% | |
| GGAGCGGATACATTATCTCC+TGG | + | chr1.3:4345645-4345664 | MS.gene00449:CDS | 50.0% | |
| TCAGAACCAGCTTCTCCTTG+AGG | - | chr1.3:4344867-4344886 | None:intergenic | 50.0% | |
| TGAACTATGCATCCCTGACG+AGG | - | chr1.3:4346345-4346364 | None:intergenic | 50.0% | |
| TGAGTTCCCTCAAATCCAGG+AGG | - | chr1.3:4344900-4344919 | None:intergenic | 50.0% | |
| TGCACACCAATGCCAATGCA+GGG | + | chr1.3:4342635-4342654 | MS.gene00449:intron | 50.0% | |
| TGGCGATTACTGGAGGAGTA+TGG | - | chr1.3:4346152-4346171 | None:intergenic | 50.0% | |
| TGTCTAACACTGGGATGGAG+AGG | + | chr1.3:4343768-4343787 | MS.gene00449:intron | 50.0% | |
| TTGTTGCCTCAAGGAGAAGC+TGG | + | chr1.3:4344858-4344877 | MS.gene00449:CDS | 50.0% | |
| ! | GCTGGTGCTTGCAGAAGTAT+CGG | + | chr1.3:4343645-4343664 | MS.gene00449:intron | 50.0% |
| !! | GGTGGATGGTGGATCATTGT+GGG | - | chr1.3:4343015-4343034 | None:intergenic | 50.0% |
| !! | TGGTGGATGGTGGATCATTG+TGG | - | chr1.3:4343016-4343035 | None:intergenic | 50.0% |
| ACACTGGGATGGAGAGGTGA+AGG | + | chr1.3:4343774-4343793 | MS.gene00449:intron | 55.0% | |
| ACCTCCGGCTGTGTGAGTAT+AGG | - | chr1.3:4345976-4345995 | None:intergenic | 55.0% | |
| AGAAGGGCCGATCCTCTTGT+TGG | + | chr1.3:4343916-4343935 | MS.gene00449:intron | 55.0% | |
| AGCTCCATTCCGACATCCTC+TGG | - | chr1.3:4346273-4346292 | None:intergenic | 55.0% | |
| AGTTGACGCCATCTGACCTC+CGG | - | chr1.3:4345991-4346010 | None:intergenic | 55.0% | |
| ATGCGCACGGAAATCCTCCA+TGG | - | chr1.3:4342920-4342939 | None:intergenic | 55.0% | |
| CAGCCACTTCCAACATGGGA+GGG | + | chr1.3:4343589-4343608 | MS.gene00449:intron | 55.0% | |
| CCCACATCCCCATCTTCAAC+AGG | - | chr1.3:4345627-4345646 | None:intergenic | 55.0% | |
| GAAGGGCCGATCCTCTTGTT+GGG | + | chr1.3:4343917-4343936 | MS.gene00449:intron | 55.0% | |
| GACAGGGAACCACATGACGT+TGG | - | chr1.3:4343228-4343247 | None:intergenic | 55.0% | |
| GATGGAGAGGTGAAGGTCTC+GGG | + | chr1.3:4343781-4343800 | MS.gene00449:intron | 55.0% | |
| GCCTGTTGAAGATGGGGATG+TGG | + | chr1.3:4345623-4345642 | MS.gene00449:CDS | 55.0% | |
| GGATGGAGAGGTGAAGGTCT+CGG | + | chr1.3:4343780-4343799 | MS.gene00449:intron | 55.0% | |
| TCAGCCACTTCCAACATGGG+AGG | + | chr1.3:4343588-4343607 | MS.gene00449:intron | 55.0% | |
| TCCTATACTCACACAGCCGG+AGG | + | chr1.3:4345972-4345991 | MS.gene00449:CDS | 55.0% | |
| TGAAGATGGGGATGTGGGAG+CGG | + | chr1.3:4345629-4345648 | MS.gene00449:CDS | 55.0% | |
| TTTGACAGATGGAGGAGCCG+TGG | + | chr1.3:4342965-4342984 | MS.gene00449:intron | 55.0% | |
| ! | GTTTGGCCCTGCATTGGCAT+TGG | - | chr1.3:4342644-4342663 | None:intergenic | 55.0% |
| ! | TATTGGCTATGACGGCGCCA+TGG | + | chr1.3:4342900-4342919 | MS.gene00449:intron | 55.0% |
| !! | CTGCTGGTTCTGGCGATTAC+TGG | - | chr1.3:4346162-4346181 | None:intergenic | 55.0% |
| !! | CTGGTTCTGGCGATTACTGG+AGG | - | chr1.3:4346159-4346178 | None:intergenic | 55.0% |
| !! | GGTGCTTGCAGAAGTATCGG+AGG | + | chr1.3:4343648-4343667 | MS.gene00449:intron | 55.0% |
| CTCACATGGCAAGTGGTGGC+TGG | + | chr1.3:4345353-4345372 | MS.gene00449:CDS | 60.0% | |
| TCACACAGCCGGAGGTCAGA+TGG | + | chr1.3:4345980-4345999 | MS.gene00449:CDS | 60.0% | |
| TGGCCCTCCCATGTTGGAAG+TGG | - | chr1.3:4343595-4343614 | None:intergenic | 60.0% | |
| !! | CTGACTTGGCCCTCCCATGT+TGG | - | chr1.3:4343601-4343620 | None:intergenic | 60.0% |
| GCGCGTGTTTGGCCCTGCAT+TGG | - | chr1.3:4342650-4342669 | None:intergenic | 65.0% | |
| TGGCTATGACGGCGCCATGG+AGG | + | chr1.3:4342903-4342922 | MS.gene00449:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 4341683 | 4346400 | 4341683 | ID=MS.gene00449 |
| chr1.3 | mRNA | 4341683 | 4346400 | 4341683 | ID=MS.gene00449.t1;Parent=MS.gene00449 |
| chr1.3 | exon | 4341683 | 4341742 | 4341683 | ID=MS.gene00449.t1.exon1;Parent=MS.gene00449.t1 |
| chr1.3 | CDS | 4341683 | 4341742 | 4341683 | ID=cds.MS.gene00449.t1;Parent=MS.gene00449.t1 |
| chr1.3 | exon | 4344777 | 4344986 | 4344777 | ID=MS.gene00449.t1.exon2;Parent=MS.gene00449.t1 |
| chr1.3 | CDS | 4344777 | 4344986 | 4344777 | ID=cds.MS.gene00449.t1;Parent=MS.gene00449.t1 |
| chr1.3 | exon | 4345341 | 4345465 | 4345341 | ID=MS.gene00449.t1.exon3;Parent=MS.gene00449.t1 |
| chr1.3 | CDS | 4345341 | 4345465 | 4345341 | ID=cds.MS.gene00449.t1;Parent=MS.gene00449.t1 |
| chr1.3 | exon | 4345557 | 4346400 | 4345557 | ID=MS.gene00449.t1.exon4;Parent=MS.gene00449.t1 |
| chr1.3 | CDS | 4345557 | 4346400 | 4345557 | ID=cds.MS.gene00449.t1;Parent=MS.gene00449.t1 |
| Gene Sequence |
| Protein sequence |
