AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene004544

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004544.t1 MTR_2g436400 89.390 377 40 0 4 380 5 381 0.0 690
MS.gene004544.t1 MTR_2g437060 75.448 391 83 5 1 380 1 389 0.0 580
MS.gene004544.t1 MTR_2g437080 68.280 372 116 1 9 380 5 374 0.0 509
MS.gene004544.t1 MTR_2g436440 65.116 387 121 3 1 380 1 380 2.56e-174 491
MS.gene004544.t1 MTR_2g437030 66.404 381 116 2 9 380 83 460 5.39e-172 488
MS.gene004544.t1 MTR_2g437020 64.103 390 114 4 1 380 1 374 1.10e-171 484
MS.gene004544.t1 MTR_2g437040 64.103 351 126 0 30 380 24 374 4.05e-159 452
MS.gene004544.t1 MTR_2g437170 51.444 381 166 5 19 380 14 394 2.61e-125 367
MS.gene004544.t1 MTR_2g437150 51.330 376 164 5 19 375 14 389 2.54e-123 362
MS.gene004544.t1 MTR_4g119550 51.471 340 162 2 42 380 47 384 3.88e-123 361
MS.gene004544.t1 MTR_2g437960 52.679 336 156 2 48 380 55 390 1.48e-120 355
MS.gene004544.t1 MTR_2g437960 52.679 336 156 2 48 380 55 390 3.24e-120 355
MS.gene004544.t1 MTR_2g437120 50.407 369 168 4 21 376 17 383 7.37e-120 353
MS.gene004544.t1 MTR_2g437160 49.598 373 174 4 21 380 28 399 2.17e-118 350
MS.gene004544.t1 MTR_2g437100 51.902 368 154 6 32 376 28 395 1.25e-117 347
MS.gene004544.t1 MTR_2g438010 50.729 343 162 3 43 380 67 407 1.03e-116 346
MS.gene004544.t1 MTR_2g437130 48.248 371 180 4 15 380 12 375 1.07e-116 344
MS.gene004544.t1 MTR_2g437180 49.051 369 170 5 21 376 17 380 1.18e-114 339
MS.gene004544.t1 MTR_2g437200 47.200 375 158 3 40 376 26 398 9.33e-114 337
MS.gene004544.t1 MTR_2g437990 49.552 335 167 1 48 380 52 386 1.02e-112 336
MS.gene004544.t1 MTR_2g076320 46.494 385 175 5 17 380 13 387 2.02e-111 332
MS.gene004544.t1 MTR_2g437260 47.321 336 173 2 42 375 32 365 6.07e-110 327
MS.gene004544.t1 MTR_2g436460 47.368 342 177 2 36 376 37 376 1.79e-108 323
MS.gene004544.t1 MTR_2g436370 80.000 195 39 0 1 195 1 195 2.63e-108 316
MS.gene004544.t1 MTR_2g437240 44.562 377 169 3 42 380 28 402 4.71e-107 321
MS.gene004544.t1 MTR_2g438020 45.946 370 160 3 45 376 70 437 6.69e-105 318
MS.gene004544.t1 MTR_2g019840 46.475 383 182 8 9 380 5 375 1.06e-104 314
MS.gene004544.t1 MTR_2g437940 46.757 370 159 6 21 380 17 358 9.97e-103 308
MS.gene004544.t1 MTR_2g019810 47.305 334 170 4 47 378 32 361 1.60e-98 297
MS.gene004544.t1 MTR_4g119580 42.566 343 195 1 32 374 30 370 1.99e-91 280
MS.gene004544.t1 MTR_4g120380 43.402 341 189 2 36 374 32 370 4.45e-91 278
MS.gene004544.t1 MTR_4g120380 43.614 321 177 2 36 354 32 350 4.15e-85 265
MS.gene004544.t1 MTR_2g437090 69.136 162 50 0 219 380 1 162 2.20e-76 234
MS.gene004544.t1 MTR_2g437160 54.082 196 87 1 188 380 113 308 8.03e-65 209
MS.gene004544.t1 MTR_3g450500 33.041 342 217 5 41 374 33 370 7.79e-56 187
MS.gene004544.t1 MTR_4g007490 31.300 377 242 8 14 378 1 372 8.34e-51 174
MS.gene004544.t1 MTR_4g119570 36.437 247 124 1 126 372 14 227 1.16e-45 157
MS.gene004544.t1 MTR_8g080990 29.831 295 204 2 79 370 74 368 2.06e-37 139
MS.gene004544.t1 MTR_8g081000 26.316 342 244 4 40 374 45 385 4.92e-35 133
MS.gene004544.t1 MTR_8g081000 26.687 326 234 3 53 374 61 385 8.19e-35 132
MS.gene004544.t1 MTR_8g081000 26.687 326 234 3 53 374 61 385 8.21e-35 132
MS.gene004544.t1 MTR_2g436380 55.752 113 43 3 219 331 1 106 5.49e-30 117
MS.gene004544.t1 MTR_4g049400 39.844 128 63 2 32 145 22 149 2.55e-19 86.3
MS.gene004544.t1 MTR_3g085240 60.377 53 21 0 278 330 176 228 3.57e-15 75.1
MS.gene004544.t1 MTR_4g119615 60.000 50 20 0 318 367 26 75 8.62e-14 67.0
MS.gene004544.t1 MTR_8g012210 19.799 298 234 4 86 379 57 353 2.07e-11 65.1
MS.gene004544.t1 MTR_2g019830 55.385 65 28 1 312 376 136 199 2.72e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004544.t1 AT5G07900 34.835 333 209 4 47 373 69 399 1.34e-66 216
MS.gene004544.t1 AT1G21150 30.398 352 229 6 36 377 9 354 8.65e-49 169
MS.gene004544.t1 AT1G21150 31.378 341 218 6 47 377 56 390 1.00e-48 169
MS.gene004544.t1 AT1G21150 31.378 341 218 6 47 377 120 454 4.22e-48 169
MS.gene004544.t1 AT1G61980 28.099 363 208 7 47 365 52 405 9.63e-39 143
MS.gene004544.t1 AT1G61980 28.099 363 208 7 47 365 52 405 9.63e-39 143
MS.gene004544.t1 AT1G61980 28.099 363 208 7 47 365 52 405 9.63e-39 143
MS.gene004544.t1 AT1G62120 26.184 359 220 7 48 365 57 411 1.63e-35 135
MS.gene004544.t1 AT3G46950 25.111 450 248 12 3 377 13 448 3.40e-35 134
MS.gene004544.t1 AT1G61990 27.793 367 213 7 48 373 53 408 2.26e-34 131
MS.gene004544.t1 AT1G61990 27.793 367 213 7 48 373 53 408 2.26e-34 131
MS.gene004544.t1 AT1G61970 26.989 352 212 7 48 359 53 399 2.29e-34 131
MS.gene004544.t1 AT1G61970 26.989 352 212 7 48 359 53 399 2.29e-34 131
MS.gene004544.t1 AT1G61970 26.989 352 212 7 48 359 53 399 2.29e-34 131
MS.gene004544.t1 AT1G61970 26.989 352 212 7 48 359 53 399 2.29e-34 131
MS.gene004544.t1 AT1G61970 26.989 352 212 7 48 359 53 399 2.29e-34 131
MS.gene004544.t1 AT1G61970 26.989 352 212 7 48 359 53 399 2.29e-34 131
MS.gene004544.t1 AT1G61970 26.989 352 212 7 48 359 53 399 2.29e-34 131
MS.gene004544.t1 AT1G62085 26.065 399 207 10 47 365 55 445 2.20e-33 129
MS.gene004544.t1 AT1G62085 26.065 399 207 10 47 365 55 445 2.20e-33 129
MS.gene004544.t1 AT5G64950 30.141 355 231 8 35 374 24 376 9.79e-33 127
MS.gene004544.t1 AT1G62010 25.228 329 207 5 74 365 63 389 6.25e-30 119
MS.gene004544.t1 AT1G62110 27.517 298 202 6 1 293 11 299 6.38e-28 114
MS.gene004544.t1 AT1G61960 24.318 403 224 9 48 373 53 451 1.05e-27 114
MS.gene004544.t1 AT1G62150 22.963 405 222 10 48 372 59 453 1.72e-24 104
MS.gene004544.t1 AT5G23930 18.907 439 263 9 3 364 14 436 1.43e-14 75.5

Find 72 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTACCTCATCAACAATTT+TGG 0.089846 2.1:-56935997 MS.gene004544:CDS
GCAATCTGACAAGGAAATTT+TGG 0.119034 2.1:-56935656 MS.gene004544:CDS
CTCAAATTCTTTACAAACTA+TGG 0.179377 2.1:-56935895 MS.gene004544:CDS
GGAAAAGAGGGTTAGGGTTT+AGG 0.191466 2.1:+56936064 None:intergenic
TAAATTTAGTGATGGACTTT+TGG 0.199642 2.1:-56935285 MS.gene004544:CDS
GTGAAGGAATTAAAGGATTT+GGG 0.230293 2.1:-56935481 MS.gene004544:CDS
CTTGTAAGTGGAACAAAATT+TGG 0.240532 2.1:+56935954 None:intergenic
AGACCAACCCCATTTCTTAA+AGG 0.251996 2.1:+56935372 None:intergenic
TGACAAAATATAAGGTGTTT+TGG 0.267880 2.1:+56935228 None:intergenic
GAAAAGAGGGTTAGGGTTTA+GGG 0.269920 2.1:+56936065 None:intergenic
GGTATTGATTACTGTTGTTT+TGG 0.274832 2.1:+56935417 None:intergenic
AAGAATTTGAGAACAGATTC+AGG 0.277439 2.1:+56935907 None:intergenic
GGTGAAGGAATTAAAGGATT+TGG 0.282534 2.1:-56935482 MS.gene004544:CDS
AGGTTGGGACTATTTGATTC+TGG 0.292547 2.1:+56935701 None:intergenic
GCCTTTGAGATGATAGATTA+GGG 0.323674 2.1:+56936113 None:intergenic
AAACTTTGGCAACACCGTTT+TGG 0.327649 2.1:+56935807 None:intergenic
AAACTTAATGACAAAATATA+AGG 0.334003 2.1:+56935220 None:intergenic
ATAGATGTTAACATACAATA+AGG 0.339229 2.1:+56935316 None:intergenic
CTATGTTCAACTTCAATTCA+TGG 0.356662 2.1:-56936149 MS.gene004544:CDS
GATAGATTAGGGTTCTTCTA+TGG 0.364725 2.1:+56936124 None:intergenic
AAGTTGATACCTTTAAGAAA+TGG 0.365182 2.1:-56935381 MS.gene004544:CDS
AGTTGATACCTTTAAGAAAT+GGG 0.365271 2.1:-56935380 MS.gene004544:CDS
TTGGGTCAATCAGTTGGGTT+GGG 0.365374 2.1:-56935266 MS.gene004544:CDS
CAAGTCGGTGAAGGAATTAA+AGG 0.378802 2.1:-56935488 MS.gene004544:CDS
AAATGGTGGAAAAGAGGGTT+AGG 0.393469 2.1:+56936057 None:intergenic
TTAGGGATTGTGATGTTTGT+CGG 0.396852 2.1:+56936082 None:intergenic
AACTTATCAGTCACTACAAA+TGG 0.416436 2.1:+56935112 None:intergenic
GTCAGAGGTAGAAGCACCTT+TGG 0.417863 2.1:+56935771 None:intergenic
AATAGTCCCAACCTATGAAT+TGG 0.421560 2.1:-56935692 MS.gene004544:CDS
AATTGCACAACAGCGGCTCT+TGG 0.430860 2.1:+56935181 None:intergenic
TTTGGGTCAATCAGTTGGGT+TGG 0.431987 2.1:-56935267 MS.gene004544:CDS
AGCCTTTGAGATGATAGATT+AGG 0.436573 2.1:+56936112 None:intergenic
TGGCAATCATATCGCGTAGT+TGG 0.438979 2.1:+56935860 None:intergenic
TATCAACTTTCTCTTTCCAT+AGG 0.439630 2.1:+56935395 None:intergenic
GGTTTGCAGGAAAGCAGCTC+TGG 0.441213 2.1:+56935832 None:intergenic
GGCAATCATATCGCGTAGTT+GGG 0.453430 2.1:+56935861 None:intergenic
TAGGGATTGTGATGTTTGTC+GGG 0.455920 2.1:+56936083 None:intergenic
ATCACAATGCTGATTGAGAA+TGG 0.457142 2.1:-56935580 MS.gene004544:CDS
GTTGAAACGAACCTTGTAAG+TGG 0.460213 2.1:+56935942 None:intergenic
GGAAAGCAGCTCTGGCATCT+TGG 0.471973 2.1:+56935840 None:intergenic
GAATCTGTACACCAATTCAT+AGG 0.478001 2.1:+56935681 None:intergenic
TGCAGAAATGGTGGAAAAGA+GGG 0.479175 2.1:+56936052 None:intergenic
CTGTACACCAATTCATAGGT+TGG 0.484595 2.1:+56935685 None:intergenic
AGGCTTGCATACAAAACTCT+AGG 0.506576 2.1:+56935724 None:intergenic
TCAGTTGGGTTGGGATGCTA+TGG 0.506950 2.1:-56935257 MS.gene004544:CDS
TGTACACCAATTCATAGGTT+GGG 0.507173 2.1:+56935686 None:intergenic
TCACAATGCTGATTGAGAAT+GGG 0.508211 2.1:-56935579 MS.gene004544:CDS
GTGCAGAAATGGTGGAAAAG+AGG 0.511827 2.1:+56936051 None:intergenic
CAACAGTAATCAATACCCTA+TGG 0.513109 2.1:-56935411 MS.gene004544:CDS
ATCAACTTTCTCTTTCCATA+GGG 0.529759 2.1:+56935396 None:intergenic
GTGCAATTTCTTCTCAACAA+AGG 0.536369 2.1:-56935166 MS.gene004544:CDS
TTCCTGCAAACCCTCCAAAA+CGG 0.545667 2.1:-56935821 MS.gene004544:CDS
AATGGTGGAAAAGAGGGTTA+GGG 0.547641 2.1:+56936058 None:intergenic
GTTGATACCTTTAAGAAATG+GGG 0.553181 2.1:-56935379 MS.gene004544:CDS
AAACATTAAAACTTTGCTGA+GGG 0.556810 2.1:-56935545 MS.gene004544:CDS
TTGGGACTATTTGATTCTGG+AGG 0.560239 2.1:+56935704 None:intergenic
CCCAAAATTGTTGATGAGGT+AGG 0.566478 2.1:+56935996 None:intergenic
AAAACCCAAAATTGTTGATG+AGG 0.567106 2.1:+56935992 None:intergenic
ACCCTAATCTATCATCTCAA+AGG 0.569786 2.1:-56936114 MS.gene004544:CDS
CAGATTCTTGCAATCTGACA+AGG 0.575407 2.1:-56935665 MS.gene004544:CDS
GGCTTGCATACAAAACTCTA+GGG 0.581368 2.1:+56935725 None:intergenic
ATACCTTTAAGAAATGGGGT+TGG 0.587688 2.1:-56935375 MS.gene004544:CDS
GAGGTAGGAGGCTGCAAATG+AGG 0.592279 2.1:+56936011 None:intergenic
CAAACATTAAAACTTTGCTG+AGG 0.594344 2.1:-56935546 MS.gene004544:CDS
TGAAGGAATTAAAGGATTTG+GGG 0.597102 2.1:-56935480 MS.gene004544:CDS
TGACATGCTCAAGTCGGTGA+AGG 0.598383 2.1:-56935497 MS.gene004544:CDS
GACAATGTTAACAATGTCAG+AGG 0.618058 2.1:+56935756 None:intergenic
AAATTTGGAAGCAGATTGTG+AGG 0.621731 2.1:+56935969 None:intergenic
AAAATTGTTGATGAGGTAGG+AGG 0.622972 2.1:+56935999 None:intergenic
CACAATGCTGATTGAGAATG+GGG 0.632348 2.1:-56935578 MS.gene004544:CDS
GAGACGTGACATGCTCAAGT+CGG 0.666473 2.1:-56935503 MS.gene004544:CDS
GAGAAGAAATTGCACAACAG+CGG 0.667692 2.1:+56935174 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTTAATGACAAAATATA+AGG + chr2.1:56935957-56935976 None:intergenic 15.0%
!! TGAAAAAATAAATTTAGTGA+TGG - chr2.1:56935881-56935900 MS.gene004544:CDS 15.0%
!!! TTATATTTTGTCATTAAGTT+TGG - chr2.1:56935956-56935975 MS.gene004544:CDS 15.0%
!! ATAGATGTTAACATACAATA+AGG + chr2.1:56935861-56935880 None:intergenic 20.0%
!!! TTATCTTTTAAAGTTGTATG+AGG - chr2.1:56936127-56936146 MS.gene004544:CDS 20.0%
! AAACATTAAAACTTTGCTGA+GGG - chr2.1:56935629-56935648 MS.gene004544:CDS 25.0%
! CTCAAATTCTTTACAAACTA+TGG - chr2.1:56935279-56935298 MS.gene004544:CDS 25.0%
! GAGAGAAAAAATTGAAACTT+TGG + chr2.1:56935384-56935403 None:intergenic 25.0%
! TGTCATTAAGTTTGGAAAAA+AGG - chr2.1:56935964-56935983 MS.gene004544:CDS 25.0%
!! AATCCTTCAAAAACAACTTT+TGG - chr2.1:56935720-56935739 MS.gene004544:CDS 25.0%
!! AGTTGATACCTTTAAGAAAT+GGG - chr2.1:56935794-56935813 MS.gene004544:CDS 25.0%
!!! AAATTTAGTGATGGACTTTT+GGG - chr2.1:56935890-56935909 MS.gene004544:CDS 25.0%
!!! AAGTTGATACCTTTAAGAAA+TGG - chr2.1:56935793-56935812 MS.gene004544:CDS 25.0%
!!! TAAATTTAGTGATGGACTTT+TGG - chr2.1:56935889-56935908 MS.gene004544:CDS 25.0%
!!! TATAAAACGTTTTGAGAATG+AGG - chr2.1:56936100-56936119 MS.gene004544:CDS 25.0%
!!! TGACAAAATATAAGGTGTTT+TGG + chr2.1:56935949-56935968 None:intergenic 25.0%
!!! TTTCAATTTTTTCTCTCCAA+AGG - chr2.1:56935387-56935406 MS.gene004544:CDS 25.0%
AAAACCCAAAATTGTTGATG+AGG + chr2.1:56935185-56935204 None:intergenic 30.0%
AACTTATCAGTCACTACAAA+TGG + chr2.1:56936065-56936084 None:intergenic 30.0%
AAGAATTTGAGAACAGATTC+AGG + chr2.1:56935270-56935289 None:intergenic 30.0%
ATCAACTTTCTCTTTCCATA+GGG + chr2.1:56935781-56935800 None:intergenic 30.0%
CAAACATTAAAACTTTGCTG+AGG - chr2.1:56935628-56935647 MS.gene004544:CDS 30.0%
CTTGTAAGTGGAACAAAATT+TGG + chr2.1:56935223-56935242 None:intergenic 30.0%
GTGAAGGAATTAAAGGATTT+GGG - chr2.1:56935693-56935712 MS.gene004544:CDS 30.0%
TATCAACTTTCTCTTTCCAT+AGG + chr2.1:56935782-56935801 None:intergenic 30.0%
TGAAGGAATTAAAGGATTTG+GGG - chr2.1:56935694-56935713 MS.gene004544:CDS 30.0%
! CAAATTTTGTTCCACTTACA+AGG - chr2.1:56935221-56935240 MS.gene004544:CDS 30.0%
! GTTGATACCTTTAAGAAATG+GGG - chr2.1:56935795-56935814 MS.gene004544:CDS 30.0%
!!! AATATAAGGTGTTTTGGCAA+TGG + chr2.1:56935943-56935962 None:intergenic 30.0%
!!! GGTATTGATTACTGTTGTTT+TGG + chr2.1:56935760-56935779 None:intergenic 30.0%
AAATTTGGAAGCAGATTGTG+AGG + chr2.1:56935208-56935227 None:intergenic 35.0%
AATAGTCCCAACCTATGAAT+TGG - chr2.1:56935482-56935501 MS.gene004544:CDS 35.0%
ACCCTAATCTATCATCTCAA+AGG - chr2.1:56935060-56935079 MS.gene004544:CDS 35.0%
CAACAGTAATCAATACCCTA+TGG - chr2.1:56935763-56935782 MS.gene004544:CDS 35.0%
GAATCTGTACACCAATTCAT+AGG + chr2.1:56935496-56935515 None:intergenic 35.0%
GACAATGTTAACAATGTCAG+AGG + chr2.1:56935421-56935440 None:intergenic 35.0%
GATAGATTAGGGTTCTTCTA+TGG + chr2.1:56935053-56935072 None:intergenic 35.0%
GGTGAAGGAATTAAAGGATT+TGG - chr2.1:56935692-56935711 MS.gene004544:CDS 35.0%
GTGCAATTTCTTCTCAACAA+AGG - chr2.1:56936008-56936027 MS.gene004544:CDS 35.0%
TATGAGGAAAAACGCAATCT+AGG - chr2.1:56936143-56936162 MS.gene004544:CDS 35.0%
TGTACACCAATTCATAGGTT+GGG + chr2.1:56935491-56935510 None:intergenic 35.0%
TTAGGGATTGTGATGTTTGT+CGG + chr2.1:56935095-56935114 None:intergenic 35.0%
! AAAATTGTTGATGAGGTAGG+AGG + chr2.1:56935178-56935197 None:intergenic 35.0%
! ATACCTTTAAGAAATGGGGT+TGG - chr2.1:56935799-56935818 MS.gene004544:CDS 35.0%
! ATCACAATGCTGATTGAGAA+TGG - chr2.1:56935594-56935613 MS.gene004544:CDS 35.0%
! CCTACCTCATCAACAATTTT+GGG - chr2.1:56935178-56935197 MS.gene004544:CDS 35.0%
! GCAATCTGACAAGGAAATTT+TGG - chr2.1:56935518-56935537 MS.gene004544:CDS 35.0%
! TCACAATGCTGATTGAGAAT+GGG - chr2.1:56935595-56935614 MS.gene004544:CDS 35.0%
! TCCTACCTCATCAACAATTT+TGG - chr2.1:56935177-56935196 MS.gene004544:CDS 35.0%
!! AAGTTTTAGTGCAGAAATGG+TGG + chr2.1:56935134-56935153 None:intergenic 35.0%
!! AGCCTTTGAGATGATAGATT+AGG + chr2.1:56935065-56935084 None:intergenic 35.0%
!! CTGAAGTTTTAGTGCAGAAA+TGG + chr2.1:56935137-56935156 None:intergenic 35.0%
!! GAGAACAGATTCAGGTTTTT+GGG + chr2.1:56935262-56935281 None:intergenic 35.0%
!! GCCTTTGAGATGATAGATTA+GGG + chr2.1:56935064-56935083 None:intergenic 35.0%
!! TGAGAACAGATTCAGGTTTT+TGG + chr2.1:56935263-56935282 None:intergenic 35.0%
!!! GCACCAAAAGTTGTTTTTGA+AGG + chr2.1:56935726-56935745 None:intergenic 35.0%
AGACCAACCCCATTTCTTAA+AGG + chr2.1:56935805-56935824 None:intergenic 40.0%
AGGCTTGCATACAAAACTCT+AGG + chr2.1:56935453-56935472 None:intergenic 40.0%
AGGTTGGGACTATTTGATTC+TGG + chr2.1:56935476-56935495 None:intergenic 40.0%
CAAGTCGGTGAAGGAATTAA+AGG - chr2.1:56935686-56935705 MS.gene004544:CDS 40.0%
CAGATTCTTGCAATCTGACA+AGG - chr2.1:56935509-56935528 MS.gene004544:CDS 40.0%
CTGTACACCAATTCATAGGT+TGG + chr2.1:56935492-56935511 None:intergenic 40.0%
GAAAAGAGGGTTAGGGTTTA+GGG + chr2.1:56935112-56935131 None:intergenic 40.0%
GAGAAGAAATTGCACAACAG+CGG + chr2.1:56936003-56936022 None:intergenic 40.0%
GGCTTGCATACAAAACTCTA+GGG + chr2.1:56935452-56935471 None:intergenic 40.0%
GTTGAAACGAACCTTGTAAG+TGG + chr2.1:56935235-56935254 None:intergenic 40.0%
TAGGGATTGTGATGTTTGTC+GGG + chr2.1:56935094-56935113 None:intergenic 40.0%
TTGGGACTATTTGATTCTGG+AGG + chr2.1:56935473-56935492 None:intergenic 40.0%
! AAACTTTGGCAACACCGTTT+TGG + chr2.1:56935370-56935389 None:intergenic 40.0%
! AAATGGTGGAAAAGAGGGTT+AGG + chr2.1:56935120-56935139 None:intergenic 40.0%
! AATGGTGGAAAAGAGGGTTA+GGG + chr2.1:56935119-56935138 None:intergenic 40.0%
! CACAATGCTGATTGAGAATG+GGG - chr2.1:56935596-56935615 MS.gene004544:CDS 40.0%
! CCCAAAATTGTTGATGAGGT+AGG + chr2.1:56935181-56935200 None:intergenic 40.0%
! TGCAGAAATGGTGGAAAAGA+GGG + chr2.1:56935125-56935144 None:intergenic 40.0%
!! GACTTTTGGGTCAATCAGTT+GGG - chr2.1:56935903-56935922 MS.gene004544:CDS 40.0%
GGAAAAGAGGGTTAGGGTTT+AGG + chr2.1:56935113-56935132 None:intergenic 45.0%
GGCAATCATATCGCGTAGTT+GGG + chr2.1:56935316-56935335 None:intergenic 45.0%
TGGCAATCATATCGCGTAGT+TGG + chr2.1:56935317-56935336 None:intergenic 45.0%
TTCCTGCAAACCCTCCAAAA+CGG - chr2.1:56935353-56935372 MS.gene004544:CDS 45.0%
TTGGGTCAATCAGTTGGGTT+GGG - chr2.1:56935908-56935927 MS.gene004544:CDS 45.0%
TTTGGGTCAATCAGTTGGGT+TGG - chr2.1:56935907-56935926 MS.gene004544:CDS 45.0%
! GTGCAGAAATGGTGGAAAAG+AGG + chr2.1:56935126-56935145 None:intergenic 45.0%
!! GGACTTTTGGGTCAATCAGT+TGG - chr2.1:56935902-56935921 MS.gene004544:CDS 45.0%
!! TTTGGCAACACCGTTTTGGA+GGG + chr2.1:56935366-56935385 None:intergenic 45.0%
AATTGCACAACAGCGGCTCT+TGG + chr2.1:56935996-56936015 None:intergenic 50.0%
GAGACGTGACATGCTCAAGT+CGG - chr2.1:56935671-56935690 MS.gene004544:CDS 50.0%
TGACATGCTCAAGTCGGTGA+AGG - chr2.1:56935677-56935696 MS.gene004544:CDS 50.0%
! CTTTGGCAACACCGTTTTGG+AGG + chr2.1:56935367-56935386 None:intergenic 50.0%
!! GTCAGAGGTAGAAGCACCTT+TGG + chr2.1:56935406-56935425 None:intergenic 50.0%
!! TCAGTTGGGTTGGGATGCTA+TGG - chr2.1:56935917-56935936 MS.gene004544:CDS 50.0%
GAGGTAGGAGGCTGCAAATG+AGG + chr2.1:56935166-56935185 None:intergenic 55.0%
GGTTTGCAGGAAAGCAGCTC+TGG + chr2.1:56935345-56935364 None:intergenic 55.0%
! GGAAAGCAGCTCTGGCATCT+TGG + chr2.1:56935337-56935356 None:intergenic 55.0%
!!! CACCGTTTTGGAGGGTTTGC+AGG + chr2.1:56935358-56935377 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 56935027 56936169 56935027 ID=MS.gene004544
chr2.1 mRNA 56935027 56936169 56935027 ID=MS.gene004544.t1;Parent=MS.gene004544
chr2.1 exon 56935027 56936169 56935027 ID=MS.gene004544.t1.exon1;Parent=MS.gene004544.t1
chr2.1 CDS 56935027 56936169 56935027 ID=cds.MS.gene004544.t1;Parent=MS.gene004544.t1
Gene Sequence

>MS.gene004544

ATGTTCAACTTCAATTCATGGCGCCATAGAAGAACCCTAATCTATCATCTCAAAGGCTTCACTACCCGACAAACATCACAATCCCTAAACCCTAACCCTCTTTTCCACCATTTCTGCACTAAAACTTCAGATTCAACCTCATTTGCAGCCTCCTACCTCATCAACAATTTTGGGTTTTCCTCACAATCTGCTTCCAAATTTTGTTCCACTTACAAGGTTCGTTTCAACAATGCCCAAAAACCTGAATCTGTTCTCAAATTCTTTACAAACTATGGTTTCTCTGATTCCCAACTACGCGATATGATTGCCAAGATGCCAGAGCTGCTTTCCTGCAAACCCTCCAAAACGGTGTTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGTGCTTCTACCTCTGACATTGTTAACATTGTCTCTACAAACCCTAGAGTTTTGTATGCAAGCCTCCAGAATCAAATAGTCCCAACCTATGAATTGGTGTACAGATTCTTGCAATCTGACAAGGAAATTTTGGCAAAATTGAGTTACAATGCAAATTTACTTTGTGATCGTACTGTGTATAATAACATCACAATGCTGATTGAGAATGGGGTGTCTGACTCAAACATTAAAACTTTGCTGAGGGAACAGACTCGAATATTCAAGAGACGTGACATGCTCAAGTCGGTGAAGGAATTAAAGGATTTGGGGTTTAATCCTTCAAAAACAACTTTTGGTGCAGCATTGCATGCCAAAACAACAGTAATCAATACCCTATGGAAAGAGAAAGTTGATACCTTTAAGAAATGGGGTTGGTCTGAAGAAGATTCTCTTGAAGCATTTAGAAAGAAACCTTATTGTATGTTAACATCTATTGAAAAAATAAATTTAGTGATGGACTTTTGGGTCAATCAGTTGGGTTGGGATGCTATGGCCATTGCCAAAACACCTTATATTTTGTCATTAAGTTTGGAAAAAAGGATCATTCCAAGAGCCGCTGTTGTGCAATTTCTTCTCAACAAAGGTTTGACAGATAAGAATGCAAGCTTAACTTATCCATTTGTAGTGACTGATAAGTTGTTTCTTAATATGTTTATAAAACGTTTTGAGAATGAGGCTTCTTATCTTTTAAAGTTGTATGAGGAAAAACGCAATCTAGGATAG
Protein sequence

>MS.gene004544.t1

MFNFNSWRHRRTLIYHLKGFTTRQTSQSLNPNPLFHHFCTKTSDSTSFAASYLINNFGFSSQSASKFCSTYKVRFNNAQKPESVLKFFTNYGFSDSQLRDMIAKMPELLSCKPSKTVLPKFQFFLSKGASTSDIVNIVSTNPRVLYASLQNQIVPTYELVYRFLQSDKEILAKLSYNANLLCDRTVYNNITMLIENGVSDSNIKTLLREQTRIFKRRDMLKSVKELKDLGFNPSKTTFGAALHAKTTVINTLWKEKVDTFKKWGWSEEDSLEAFRKKPYCMLTSIEKINLVMDFWVNQLGWDAMAIAKTPYILSLSLEKRIIPRAAVVQFLLNKGLTDKNASLTYPFVVTDKLFLNMFIKRFENEASYLLKLYEEKRNLG