AlfalfaGEDB | MS.gene004620

M. sativa cultivar XinJiangDaYe / MS.gene004620

KEGG: K15032
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004620.t1	RHN73260.1	81.4	199	35	1	1	197	1	199	8.00E-83	316.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004620.t1	A0A396J5K7	81.4	199	35	1	1	197	1	199	5.8e-83	316.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene004620.t1	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004620.t1	MTR_2g437170	78.680	197	40	1	1	195	207	403	7.23e-106	310
MS.gene004620.t1	MTR_2g438020	78.392	199	40	2	1	197	254	451	4.01e-105	311
MS.gene004620.t1	MTR_2g437150	76.382	199	45	1	1	197	207	405	6.38e-105	307
MS.gene004620.t1	MTR_2g437240	79.592	196	38	1	1	194	215	410	3.37e-103	303
MS.gene004620.t1	MTR_2g437180	76.142	197	47	0	1	197	199	395	4.90e-103	302
MS.gene004620.t1	MTR_2g437940	76.382	199	45	1	1	197	171	369	2.82e-101	297
MS.gene004620.t1	MTR_2g437960	76.142	197	45	1	1	195	203	399	6.61e-101	297
MS.gene004620.t1	MTR_2g437960	76.142	197	45	1	1	195	203	399	1.30e-100	297
MS.gene004620.t1	MTR_2g437120	77.778	198	41	2	1	196	201	397	1.50e-99	294
MS.gene004620.t1	MTR_2g437200	78.261	184	38	1	1	182	215	398	5.46e-97	287

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004620.t1	AT5G07900	34.239	184	116	3	1	179	216	399	9.32e-26	102
MS.gene004620.t1	AT5G64950	32.386	176	103	3	5	169	192	362	5.10e-18	81.3
MS.gene004620.t1	AT1G21150	32.353	170	112	2	3	169	169	338	1.04e-17	80.1
MS.gene004620.t1	AT1G21150	32.353	170	112	2	3	169	205	374	1.27e-17	80.1
MS.gene004620.t1	AT1G21150	32.353	170	112	2	3	169	269	438	1.64e-17	80.1
MS.gene004620.t1	AT1G61990	27.751	209	112	4	1	170	189	397	5.58e-16	75.5
MS.gene004620.t1	AT1G61990	27.751	209	112	4	1	170	189	397	5.58e-16	75.5
MS.gene004620.t1	AT1G61970	24.878	205	115	5	1	167	196	399	7.25e-12	63.5
MS.gene004620.t1	AT1G61970	24.878	205	115	5	1	167	196	399	7.25e-12	63.5
MS.gene004620.t1	AT1G61970	24.878	205	115	5	1	167	196	399	7.25e-12	63.5

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Find 35 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTATAACAAAACATATT+TGG	0.239296	2.2:-51671888	None:intergenic
AAAGGATTTGATTAAGTCAT+TGG	0.335353	2.2:+51671608	MS.gene004620:CDS
AAGTCATTGGAGGAAGTTAA+GGG	0.441441	2.2:+51671621	MS.gene004620:CDS
AAGTTGATACCTTTAAGAAA+TGG	0.381314	2.2:+51671727	MS.gene004620:CDS
AATGAAACTTGCATACACAA+AGG	0.663379	2.2:+51672082	MS.gene004620:CDS
AATTGCAAAACTGAGGCTCT+TGG	0.425012	2.2:-51671927	None:intergenic
ACCCCAAAAGTAGTCAACGA+AGG	0.684823	2.2:-51671657	None:intergenic
AGACCAAACCCATTTCTTAA+AGG	0.298186	2.2:-51671736	None:intergenic
AGTTGATACCTTTAAGAAAT+GGG	0.401053	2.2:+51671728	MS.gene004620:CDS
ATACCTTTAAGAAATGGGTT+TGG	0.440200	2.2:+51671733	MS.gene004620:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAAACTTGCATACACAA+AGG	+	chr2.2:51672082-51672101	MS.gene004620:CDS	30.0%
ATATCAGCCTAATTTGATGT+TGG	+	chr2.2:51671785-51671804	MS.gene004620:CDS	30.0%
ATTGAAGCCAACATCAAATT+AGG	-	chr2.2:51671795-51671814	None:intergenic	30.0%
CAAAAGAAATTGCAAAACTG+AGG	-	chr2.2:51671937-51671956	None:intergenic	30.0%
AAGTCATTGGAGGAAGTTAA+GGG	+	chr2.2:51671621-51671640	MS.gene004620:CDS	35.0%
AGACCAAACCCATTTCTTAA+AGG	-	chr2.2:51671739-51671758	None:intergenic	35.0%
GGATTTGATTAAGTCATTGG+AGG	+	chr2.2:51671611-51671630	MS.gene004620:CDS	35.0%
TAAGTCATTGGAGGAAGTTA+AGG	+	chr2.2:51671620-51671639	MS.gene004620:CDS	35.0%
TTGGGTCAATCAATTAGGTT+GGG	+	chr2.2:51671842-51671861	MS.gene004620:CDS	35.0%
TTTGGGTCAATCAATTAGGT+TGG	+	chr2.2:51671841-51671860	MS.gene004620:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	51671537	51672130	51671537	ID=MS.gene004620
chr2.2	mRNA	51671537	51672130	51671537	ID=MS.gene004620.t1;Parent=MS.gene004620
chr2.2	exon	51671537	51672130	51671537	ID=MS.gene004620.t1.exon1;Parent=MS.gene004620.t1
chr2.2	CDS	51671537	51672130	51671537	ID=cds.MS.gene004620.t1;Parent=MS.gene004620.t1

Gene Sequence

>MS.gene004620

ATGGCTGATTTTGGAGTTTCTGATAATGTTATTGCTAGTTTGCTTCAGTCAAGGCCATCTATATTTGGTTTAAAGGATTTGATTAAGTCATTGGAGGAAGTTAAGGGTTTAGGGTTTGATCCTTCGTTGACTACTTTTGGGGTTGCTTTGGTAGCCAAGAAAGGTTTAAGTAAAAAAATTTTGGATGAGAAAGTTGATACCTTTAAGAAATGGGTTTGGTCTGATGAAGATGTAATTCGAGCATTTAGATATCAGCCTAATTTGATGTTGGCTTCAATTGATAAGATTAGTTTGCTGATGAGTTTTTGGGTCAATCAATTAGGTTGGGATTCCTTGGCACTTGCTAAATTTCCAAATATGTTTTGTTATAGTTTACATAAAAGGATCATTCCAAGAGCCTCAGTTTTGCAATTTCTTTTGATGAAAGGTTTGCGAAAAAAGAATGCAAGCTTAGTCACACCATTTACTTATTCTGAAGATATGTTCTTGAGCAAGTTTGTCTTGAAGGAGGAGTCTAACTATCTATTAAAGTTATACGAGGAAAAAATGAAACTTGCATACACAAAGGAGAACAATGGCATGCCATTCACTTAA

Protein sequence

>MS.gene004620.t1

MADFGVSDNVIASLLQSRPSIFGLKDLIKSLEEVKGLGFDPSLTTFGVALVAKKGLSKKILDEKVDTFKKWVWSDEDVIRAFRYQPNLMLASIDKISLLMSFWVNQLGWDSLALAKFPNMFCYSLHKRIIPRASVLQFLLMKGLRKKNASLVTPFTYSEDMFLSKFVLKEESNYLLKLYEEKMKLAYTKENNGMPFT