Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004686.t1 | XP_003590676.1 | 93.8 | 325 | 20 | 0 | 1 | 325 | 1 | 325 | 6.40E-170 | 606.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004686.t1 | Q8S3D5 | 36.2 | 130 | 81 | 1 | 190 | 317 | 136 | 265 | 8.6e-14 | 79.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004686.t1 | G7IEF8 | 93.8 | 325 | 20 | 0 | 1 | 325 | 1 | 325 | 4.6e-170 | 606.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene004686.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004686.t1 | MTR_1g072530 | 93.846 | 325 | 20 | 0 | 1 | 325 | 1 | 325 | 0.0 | 635 |
| MS.gene004686.t1 | MTR_1g072530 | 93.069 | 303 | 21 | 0 | 1 | 303 | 1 | 303 | 0.0 | 590 |
| MS.gene004686.t1 | MTR_4g131160 | 35.811 | 148 | 75 | 3 | 190 | 317 | 202 | 349 | 8.89e-18 | 83.6 |
| MS.gene004686.t1 | MTR_4g131160 | 35.811 | 148 | 75 | 3 | 190 | 317 | 205 | 352 | 1.05e-17 | 83.6 |
| MS.gene004686.t1 | MTR_1g080890 | 33.577 | 137 | 79 | 1 | 190 | 314 | 199 | 335 | 1.56e-15 | 76.6 |
| MS.gene004686.t1 | MTR_1g070870 | 33.333 | 117 | 66 | 1 | 213 | 317 | 149 | 265 | 1.68e-11 | 64.3 |
| MS.gene004686.t1 | MTR_1g070870 | 33.333 | 117 | 66 | 1 | 213 | 317 | 152 | 268 | 1.81e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004686.t1 | AT5G64980 | 44.715 | 123 | 66 | 2 | 191 | 311 | 218 | 340 | 1.61e-22 | 96.7 |
| MS.gene004686.t1 | AT5G64980 | 44.715 | 123 | 66 | 2 | 191 | 311 | 218 | 340 | 1.61e-22 | 96.7 |
| MS.gene004686.t1 | AT2G24260 | 34.132 | 167 | 83 | 5 | 170 | 317 | 23 | 181 | 3.33e-18 | 82.8 |
| MS.gene004686.t1 | AT4G30980 | 36.154 | 130 | 81 | 1 | 190 | 317 | 136 | 265 | 3.80e-18 | 84.0 |
| MS.gene004686.t1 | AT4G30980 | 36.154 | 130 | 81 | 1 | 190 | 317 | 184 | 313 | 7.26e-18 | 83.6 |
| MS.gene004686.t1 | AT2G24260 | 34.132 | 167 | 83 | 5 | 170 | 317 | 126 | 284 | 1.48e-17 | 82.8 |
| MS.gene004686.t1 | AT5G58010 | 33.108 | 148 | 75 | 4 | 190 | 315 | 105 | 250 | 2.14e-14 | 72.8 |
| MS.gene004686.t1 | AT1G03040 | 29.082 | 196 | 119 | 4 | 133 | 310 | 79 | 272 | 4.66e-13 | 68.9 |
| MS.gene004686.t1 | AT1G03040 | 30.000 | 200 | 115 | 5 | 134 | 310 | 80 | 277 | 4.68e-13 | 68.9 |
| MS.gene004686.t1 | AT4G02590 | 33.628 | 113 | 61 | 1 | 213 | 311 | 112 | 224 | 1.82e-11 | 63.9 |
| MS.gene004686.t1 | AT4G02590 | 33.628 | 113 | 61 | 1 | 213 | 311 | 175 | 287 | 2.23e-11 | 64.3 |
| MS.gene004686.t1 | AT4G02590 | 33.628 | 113 | 61 | 1 | 213 | 311 | 175 | 287 | 2.23e-11 | 64.3 |
Find 54 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAGCTGCCTCCTGATTT+TGG | 0.146986 | 1.1:-54711304 | None:intergenic |
| GATCCTGGAAAAGCTGATTT+TGG | 0.197185 | 1.1:+54710384 | MS.gene004686:CDS |
| GATTCTTCAAGTCATGATTT+TGG | 0.215491 | 1.1:+54710420 | MS.gene004686:CDS |
| TGCTTCACAATTTGATCATA+TGG | 0.268319 | 1.1:+54711249 | MS.gene004686:CDS |
| ATGATTTATTCACAGGGTTA+TGG | 0.279023 | 1.1:+54712423 | MS.gene004686:intron |
| TTACTTCCAAATCCAAAATC+AGG | 0.321359 | 1.1:+54711292 | MS.gene004686:CDS |
| TGAGCCTCTTGAAGAGATAA+TGG | 0.328914 | 1.1:+54712473 | MS.gene004686:CDS |
| TGATTTATTCACAGGGTTAT+GGG | 0.337574 | 1.1:+54712424 | MS.gene004686:intron |
| TGTTCTGCTGCCTATTGCTT+TGG | 0.355110 | 1.1:+54712554 | MS.gene004686:CDS |
| TGCTTATCTCCAACTGAATC+AGG | 0.357388 | 1.1:-54711223 | None:intergenic |
| GAGCCTCTTGAAGAGATAAT+GGG | 0.382191 | 1.1:+54712474 | MS.gene004686:CDS |
| TCAGCTGTTGTAGTAGTGTT+TGG | 0.383509 | 1.1:-54710300 | None:intergenic |
| GAAGCTCATATATTTGAAAC+TGG | 0.399824 | 1.1:+54710602 | MS.gene004686:CDS |
| ACAGCTGAGTATAATATGAT+TGG | 0.401813 | 1.1:+54710315 | MS.gene004686:CDS |
| TTTGGATTTGGAAGTAAAGA+AGG | 0.414312 | 1.1:-54711286 | None:intergenic |
| GGTTCAACCATTGCATAGCT+TGG | 0.429150 | 1.1:-54712590 | None:intergenic |
| AAACAACAGATTACCACATC+TGG | 0.432844 | 1.1:-54711594 | None:intergenic |
| GCTTCACAATTTGATCATAT+GGG | 0.439933 | 1.1:+54711250 | MS.gene004686:CDS |
| GGGTTATGGGCATTATATAA+AGG | 0.442119 | 1.1:+54712437 | MS.gene004686:intron |
| TACTACCAAGAGTTTGATAA+TGG | 0.442854 | 1.1:-54710344 | None:intergenic |
| AGTTCATCAACCAAAGCAAT+AGG | 0.445410 | 1.1:-54712564 | None:intergenic |
| GCAATTCATGTAAAGCTTTG+AGG | 0.446403 | 1.1:-54711563 | None:intergenic |
| TCCCACTTCTTCCAAAGTGT+TGG | 0.449123 | 1.1:-54710203 | None:intergenic |
| ATTAACTAACCTCAGTATAG+TGG | 0.456570 | 1.1:-54710640 | None:intergenic |
| GTTAGCTAGCCTAGCTAGCT+TGG | 0.456823 | 1.1:-54712611 | None:intergenic |
| CAAATTCAAAACCAACACTT+TGG | 0.479840 | 1.1:+54710192 | MS.gene004686:CDS |
| GGGTAGTCAAGCTTACATAT+TGG | 0.487201 | 1.1:+54711753 | MS.gene004686:intron |
| AACCAACACTTTGGAAGAAG+TGG | 0.489754 | 1.1:+54710201 | MS.gene004686:CDS |
| CAGCTGAGTATAATATGATT+GGG | 0.492720 | 1.1:+54710316 | MS.gene004686:CDS |
| AATAGCCATTATCAAACTCT+TGG | 0.493382 | 1.1:+54710339 | MS.gene004686:CDS |
| ATGGTTGAACCAAGCTAGCT+AGG | 0.499706 | 1.1:+54712602 | MS.gene004686:CDS |
| AGCAGCAGTTTCAATGATCC+TGG | 0.501372 | 1.1:+54710369 | MS.gene004686:CDS |
| GATGTTCCTCAGAAACATCA+TGG | 0.503963 | 1.1:-54710170 | None:intergenic |
| TTCCCCATTATCTCTTCAAG+AGG | 0.517037 | 1.1:-54712477 | None:intergenic |
| CAACTTTCATATGAAAATGA+AGG | 0.525784 | 1.1:+54710138 | MS.gene004686:CDS |
| TTGGAGAAATGATGAAGGAG+AGG | 0.544579 | 1.1:+54710577 | MS.gene004686:CDS |
| TTGGAAGAAGTGGGATAGAG+TGG | 0.574092 | 1.1:+54710211 | MS.gene004686:CDS |
| ATACTTGCAGATTCAAGTGA+AGG | 0.584258 | 1.1:+54711798 | MS.gene004686:CDS |
| CTCTTTGAATACAGCAACGC+AGG | 0.587080 | 1.1:+54711523 | MS.gene004686:intron |
| GTTCCTTTGCAGGAACTAAG+TGG | 0.591768 | 1.1:+54711957 | MS.gene004686:intron |
| ACATGGACACCTGATTCAGT+TGG | 0.593145 | 1.1:+54711214 | MS.gene004686:CDS |
| TGTAATAGGGTCATGCAACA+TGG | 0.593241 | 1.1:+54711197 | MS.gene004686:intron |
| AAGTAACCATGATGTTTCTG+AGG | 0.598121 | 1.1:+54710164 | MS.gene004686:CDS |
| GTAGTGAATAAAATAATGGA+AGG | 0.599004 | 1.1:+54710084 | None:intergenic |
| ACCAACACTTTGGAAGAAGT+GGG | 0.607841 | 1.1:+54710202 | MS.gene004686:CDS |
| CTTCCAAATCCAAAATCAGG+AGG | 0.618532 | 1.1:+54711295 | MS.gene004686:CDS |
| AGCCTCTTGAAGAGATAATG+GGG | 0.633642 | 1.1:+54712475 | MS.gene004686:CDS |
| TGTACCTCATGGAAAACTAG+TGG | 0.648110 | 1.1:-54712011 | None:intergenic |
| AGTGTTTGGAAGATAACATG+AGG | 0.650470 | 1.1:-54710286 | None:intergenic |
| AACTGAACCAAGCTATGCAA+TGG | 0.660513 | 1.1:+54712583 | MS.gene004686:CDS |
| CAGATTACCACATCTGGAGT+CGG | 0.663959 | 1.1:-54711588 | None:intergenic |
| TGTCAGCTACTTGAAAACAA+AGG | 0.685270 | 1.1:+54712528 | MS.gene004686:CDS |
| TCAAAATCTCCACTATACTG+AGG | 0.696504 | 1.1:+54710631 | MS.gene004686:CDS |
| ATTGCTGCCGACTCCAGATG+TGG | 0.727085 | 1.1:+54711581 | MS.gene004686:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAGCTAAAAAAATATA+TGG | + | chr1.1:54710981-54711000 | MS.gene004686:intron | 10.0% |
| !!! | ATTGTAATAATTTTGTAATA+GGG | + | chr1.1:54711184-54711203 | MS.gene004686:intron | 10.0% |
| !!! | TATTGTAATAATTTTGTAAT+AGG | + | chr1.1:54711183-54711202 | MS.gene004686:intron | 10.0% |
| !! | AATAAGCTGAAAAAAATATA+TGG | + | chr1.1:54711051-54711070 | MS.gene004686:intron | 15.0% |
| !! | ATTAAAATTCAGTTCATTAA+AGG | - | chr1.1:54711728-54711747 | None:intergenic | 15.0% |
| !! | TAATATATCTACTGAAATTA+AGG | - | chr1.1:54712044-54712063 | None:intergenic | 15.0% |
| !!! | ATTTAAGTAGCTAATTTTTT+TGG | + | chr1.1:54711657-54711676 | MS.gene004686:intron | 15.0% |
| !!! | TAGTTTTTTTCTATTTTATC+CGG | + | chr1.1:54711879-54711898 | MS.gene004686:intron | 15.0% |
| !!! | TGTTTTCATAAGTTATATTA+TGG | + | chr1.1:54710810-54710829 | MS.gene004686:intron | 15.0% |
| !!! | TTTAAGTAGCTAATTTTTTT+GGG | + | chr1.1:54711658-54711677 | MS.gene004686:intron | 15.0% |
| !!! | TTTCTATTATTTTAAGCTTA+AGG | - | chr1.1:54712228-54712247 | None:intergenic | 15.0% |
| !! | TATCTCTGATAAAATCATAA+GGG | + | chr1.1:54711381-54711400 | MS.gene004686:intron | 20.0% |
| !! | TTGCCATTCAAAAAAAATTT+AGG | - | chr1.1:54711836-54711855 | None:intergenic | 20.0% |
| !!! | AAAAAAATTTAGGATCGAAA+AGG | - | chr1.1:54711826-54711845 | None:intergenic | 20.0% |
| !!! | AGTTTTTTTCTATTTTATCC+GGG | + | chr1.1:54711880-54711899 | MS.gene004686:intron | 20.0% |
| !!! | GATCCTAAATTTTTTTTGAA+TGG | + | chr1.1:54711830-54711849 | MS.gene004686:intron | 20.0% |
| !!! | GATTTAACATTAGTTTTCAA+AGG | + | chr1.1:54711619-54711638 | MS.gene004686:intron | 20.0% |
| !!! | TAGAAAAAGTTTTACTTACA+CGG | - | chr1.1:54711363-54711382 | None:intergenic | 20.0% |
| !!! | TATTCAACATAGTTATTTTG+AGG | - | chr1.1:54710255-54710274 | None:intergenic | 20.0% |
| !!! | TGTTTTTTAGTAACAAAGTT+CGG | - | chr1.1:54712292-54712311 | None:intergenic | 20.0% |
| !!! | TTTGTTATGATTTATTCACA+GGG | + | chr1.1:54712417-54712436 | MS.gene004686:intron | 20.0% |
| ! | AATAAGCTGTAAAAAACTGA+TGG | + | chr1.1:54710914-54710933 | MS.gene004686:intron | 25.0% |
| ! | CAACTTTCATATGAAAATGA+AGG | + | chr1.1:54710138-54710157 | MS.gene004686:CDS | 25.0% |
| ! | CTATCTCTGATAAAATCATA+AGG | + | chr1.1:54711380-54711399 | MS.gene004686:intron | 25.0% |
| ! | GCAAAATTGTGTTAATGAAT+TGG | - | chr1.1:54711486-54711505 | None:intergenic | 25.0% |
| ! | TACTCAAGAAATTATTTGCA+TGG | - | chr1.1:54712111-54712130 | None:intergenic | 25.0% |
| !! | TAACTTGTATTTACATGCAA+CGG | - | chr1.1:54712194-54712213 | None:intergenic | 25.0% |
| !!! | ATGTTTTGTTTGTTTATGTG+AGG | + | chr1.1:54710503-54710522 | MS.gene004686:intron | 25.0% |
| !!! | GAACTGAATTTTAATTTGCA+GGG | + | chr1.1:54711733-54711752 | MS.gene004686:intron | 25.0% |
| !!! | GTTTGTTATGATTTATTCAC+AGG | + | chr1.1:54712416-54712435 | MS.gene004686:intron | 25.0% |
| !!! | TAGTTATTTTGAGGTAGTTT+TGG | - | chr1.1:54710246-54710265 | None:intergenic | 25.0% |
| !!! | TGAACTGAATTTTAATTTGC+AGG | + | chr1.1:54711732-54711751 | MS.gene004686:intron | 25.0% |
| AAGAAATTATTTGCATGGAG+CGG | - | chr1.1:54712106-54712125 | None:intergenic | 30.0% | |
| AATAGCCATTATCAAACTCT+TGG | + | chr1.1:54710339-54710358 | MS.gene004686:CDS | 30.0% | |
| AATCTATCTTGAAGAGCTTA+TGG | + | chr1.1:54710890-54710909 | MS.gene004686:intron | 30.0% | |
| ACAGCTGAGTATAATATGAT+TGG | + | chr1.1:54710315-54710334 | MS.gene004686:CDS | 30.0% | |
| AGGAAGGTAAAGTTAATGAA+TGG | + | chr1.1:54710447-54710466 | MS.gene004686:intron | 30.0% | |
| ATGATTTATTCACAGGGTTA+TGG | + | chr1.1:54712423-54712442 | MS.gene004686:intron | 30.0% | |
| ATTAACTAACCTCAGTATAG+TGG | - | chr1.1:54710643-54710662 | None:intergenic | 30.0% | |
| CAAATTCAAAACCAACACTT+TGG | + | chr1.1:54710192-54710211 | MS.gene004686:CDS | 30.0% | |
| CAGCTGAGTATAATATGATT+GGG | + | chr1.1:54710316-54710335 | MS.gene004686:CDS | 30.0% | |
| GCTTCACAATTTGATCATAT+GGG | + | chr1.1:54711250-54711269 | MS.gene004686:CDS | 30.0% | |
| TACTACCAAGAGTTTGATAA+TGG | - | chr1.1:54710347-54710366 | None:intergenic | 30.0% | |
| TATGCAAACGTGAAACTATT+TGG | - | chr1.1:54711107-54711126 | None:intergenic | 30.0% | |
| TCTATGTGAAATTGATCACA+AGG | - | chr1.1:54711912-54711931 | None:intergenic | 30.0% | |
| TGATTTATTCACAGGGTTAT+GGG | + | chr1.1:54712424-54712443 | MS.gene004686:intron | 30.0% | |
| TGCTTCACAATTTGATCATA+TGG | + | chr1.1:54711249-54711268 | MS.gene004686:CDS | 30.0% | |
| TTACTTCCAAATCCAAAATC+AGG | + | chr1.1:54711292-54711311 | MS.gene004686:CDS | 30.0% | |
| TTTGGATTTGGAAGTAAAGA+AGG | - | chr1.1:54711289-54711308 | None:intergenic | 30.0% | |
| ! | ATACTGAGGTTAGTTAATTG+AGG | + | chr1.1:54710645-54710664 | MS.gene004686:intron | 30.0% |
| ! | GAAGCTCATATATTTGAAAC+TGG | + | chr1.1:54710602-54710621 | MS.gene004686:CDS | 30.0% |
| ! | GATTCTTCAAGTCATGATTT+TGG | + | chr1.1:54710420-54710439 | MS.gene004686:CDS | 30.0% |
| ! | GTATATCTGCATTTTGAATG+TGG | - | chr1.1:54711407-54711426 | None:intergenic | 30.0% |
| ! | GTATCTTAACTCTTTTGAAC+CGG | + | chr1.1:54712339-54712358 | MS.gene004686:intron | 30.0% |
| ! | TATCTTAACTCTTTTGAACC+GGG | + | chr1.1:54712340-54712359 | MS.gene004686:intron | 30.0% |
| !! | TTGTTATTTGTACAGCTCAT+AGG | + | chr1.1:54712151-54712170 | MS.gene004686:intron | 30.0% |
| !! | TTTCTCACTTTTCTGTTTTG+TGG | - | chr1.1:54711326-54711345 | None:intergenic | 30.0% |
| AAACAACAGATTACCACATC+TGG | - | chr1.1:54711597-54711616 | None:intergenic | 35.0% | |
| AAAGAAAGTTGTTCCTTTGC+AGG | + | chr1.1:54711947-54711966 | MS.gene004686:intron | 35.0% | |
| AAGCTCTTGTGAAGAGTTTA+TGG | + | chr1.1:54711027-54711046 | MS.gene004686:intron | 35.0% | |
| AGCAGTGTCAAATTCATTGA+CGG | + | chr1.1:54712389-54712408 | MS.gene004686:intron | 35.0% | |
| AGTGTTTGGAAGATAACATG+AGG | - | chr1.1:54710289-54710308 | None:intergenic | 35.0% | |
| AGTTCATCAACCAAAGCAAT+AGG | - | chr1.1:54712567-54712586 | None:intergenic | 35.0% | |
| ATACTTGCAGATTCAAGTGA+AGG | + | chr1.1:54711798-54711817 | MS.gene004686:CDS | 35.0% | |
| GCAATTCATGTAAAGCTTTG+AGG | - | chr1.1:54711566-54711585 | None:intergenic | 35.0% | |
| GGGTTATGGGCATTATATAA+AGG | + | chr1.1:54712437-54712456 | MS.gene004686:intron | 35.0% | |
| TCAAAATCTCCACTATACTG+AGG | + | chr1.1:54710631-54710650 | MS.gene004686:CDS | 35.0% | |
| TGTCAGCTACTTGAAAACAA+AGG | + | chr1.1:54712528-54712547 | MS.gene004686:CDS | 35.0% | |
| TTATGTTAGAACAACAAGCC+CGG | - | chr1.1:54712361-54712380 | None:intergenic | 35.0% | |
| ! | AAACCAAAATCAGCTTTTCC+AGG | - | chr1.1:54710390-54710409 | None:intergenic | 35.0% |
| ! | AAGTAACCATGATGTTTCTG+AGG | + | chr1.1:54710164-54710183 | MS.gene004686:CDS | 35.0% |
| ! | TATTCAAAGAGTACACGGTA+TGG | - | chr1.1:54711514-54711533 | None:intergenic | 35.0% |
| ! | TGCTGTATTCAAAGAGTACA+CGG | - | chr1.1:54711519-54711538 | None:intergenic | 35.0% |
| !!! | CAAGTCATGATTTTGGTGTT+AGG | + | chr1.1:54710427-54710446 | MS.gene004686:CDS | 35.0% |
| !!! | TATACCACTAGTTTTCCATG+AGG | + | chr1.1:54712007-54712026 | MS.gene004686:CDS | 35.0% |
| !!! | TCATGATTTTGGTGTTAGGA+AGG | + | chr1.1:54710431-54710450 | MS.gene004686:CDS | 35.0% |
| !!! | TGTTTTGTTTTCAGCGTGTA+GGG | + | chr1.1:54710552-54710571 | MS.gene004686:intron | 35.0% |
| AACTGAACCAAGCTATGCAA+TGG | + | chr1.1:54712583-54712602 | MS.gene004686:CDS | 40.0% | |
| AAGGAAAGATGTGTACCTCA+TGG | - | chr1.1:54712025-54712044 | None:intergenic | 40.0% | |
| AGCCTCTTGAAGAGATAATG+GGG | + | chr1.1:54712475-54712494 | MS.gene004686:CDS | 40.0% | |
| CTTCCAAATCCAAAATCAGG+AGG | + | chr1.1:54711295-54711314 | MS.gene004686:CDS | 40.0% | |
| GAGCCTCTTGAAGAGATAAT+GGG | + | chr1.1:54712474-54712493 | MS.gene004686:CDS | 40.0% | |
| GAGCTCTCTTCAAGAGTTTA+TGG | + | chr1.1:54710958-54710977 | MS.gene004686:intron | 40.0% | |
| GATGTTCCTCAGAAACATCA+TGG | - | chr1.1:54710173-54710192 | None:intergenic | 40.0% | |
| GGGTAGTCAAGCTTACATAT+TGG | + | chr1.1:54711753-54711772 | MS.gene004686:intron | 40.0% | |
| TATTTGCATGGAGCGGAATT+TGG | - | chr1.1:54712099-54712118 | None:intergenic | 40.0% | |
| TCAGCTGTTGTAGTAGTGTT+TGG | - | chr1.1:54710303-54710322 | None:intergenic | 40.0% | |
| TGAGCCTCTTGAAGAGATAA+TGG | + | chr1.1:54712473-54712492 | MS.gene004686:CDS | 40.0% | |
| TGCTTATCTCCAACTGAATC+AGG | - | chr1.1:54711226-54711245 | None:intergenic | 40.0% | |
| TGTAATAGGGTCATGCAACA+TGG | + | chr1.1:54711197-54711216 | MS.gene004686:intron | 40.0% | |
| TGTACCTCATGGAAAACTAG+TGG | - | chr1.1:54712014-54712033 | None:intergenic | 40.0% | |
| TTCCCCATTATCTCTTCAAG+AGG | - | chr1.1:54712480-54712499 | None:intergenic | 40.0% | |
| TTGATCACAAGGTTCAAACC+CGG | - | chr1.1:54711901-54711920 | None:intergenic | 40.0% | |
| TTGGAGAAATGATGAAGGAG+AGG | + | chr1.1:54710577-54710596 | MS.gene004686:CDS | 40.0% | |
| ! | AACCAACACTTTGGAAGAAG+TGG | + | chr1.1:54710201-54710220 | MS.gene004686:CDS | 40.0% |
| ! | ACCAACACTTTGGAAGAAGT+GGG | + | chr1.1:54710202-54710221 | MS.gene004686:CDS | 40.0% |
| !! | GATCCTGGAAAAGCTGATTT+TGG | + | chr1.1:54710384-54710403 | MS.gene004686:CDS | 40.0% |
| !!! | GGGTTTTGGAGAAATGATGA+AGG | + | chr1.1:54710572-54710591 | MS.gene004686:CDS | 40.0% |
| !!! | GTGTTTTGTTTTCAGCGTGT+AGG | + | chr1.1:54710551-54710570 | MS.gene004686:intron | 40.0% |
| ACATGGACACCTGATTCAGT+TGG | + | chr1.1:54711214-54711233 | MS.gene004686:CDS | 45.0% | |
| AGCAGCAGTTTCAATGATCC+TGG | + | chr1.1:54710369-54710388 | MS.gene004686:CDS | 45.0% | |
| CTCTTTGAATACAGCAACGC+AGG | + | chr1.1:54711523-54711542 | MS.gene004686:intron | 45.0% | |
| CTTCCACTTAGTTCCTGCAA+AGG | - | chr1.1:54711963-54711982 | None:intergenic | 45.0% | |
| GGTTCAACCATTGCATAGCT+TGG | - | chr1.1:54712593-54712612 | None:intergenic | 45.0% | |
| GTTCCTTTGCAGGAACTAAG+TGG | + | chr1.1:54711957-54711976 | MS.gene004686:intron | 45.0% | |
| TCCCACTTCTTCCAAAGTGT+TGG | - | chr1.1:54710206-54710225 | None:intergenic | 45.0% | |
| TGTTCTGCTGCCTATTGCTT+TGG | + | chr1.1:54712554-54712573 | MS.gene004686:CDS | 45.0% | |
| TTGGAAGAAGTGGGATAGAG+TGG | + | chr1.1:54710211-54710230 | MS.gene004686:CDS | 45.0% | |
| ! | CAGATTACCACATCTGGAGT+CGG | - | chr1.1:54711591-54711610 | None:intergenic | 45.0% |
| ! | CTGCCTCCTGATTTTGGATT+TGG | - | chr1.1:54711301-54711320 | None:intergenic | 45.0% |
| ! | GTTTTCAGCGTGTAGGGTTT+TGG | + | chr1.1:54710558-54710577 | MS.gene004686:intron | 45.0% |
| !!! | TTTTTTAACTTATTTTAATA+AGG | - | chr1.1:54710839-54710858 | None:intergenic | 5.0% |
| GCCACTCTGCAGTTAGATGT+AGG | + | chr1.1:54712257-54712276 | MS.gene004686:intron | 50.0% | |
| GCCTACATCTAACTGCAGAG+TGG | - | chr1.1:54712261-54712280 | None:intergenic | 50.0% | |
| ! | GTGGAGCTGCCTCCTGATTT+TGG | - | chr1.1:54711307-54711326 | None:intergenic | 55.0% |
| !! | ATTGCTGCCGACTCCAGATG+TGG | + | chr1.1:54711581-54711600 | MS.gene004686:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 54710099 | 54712623 | 54710099 | ID=MS.gene004686 |
| chr1.1 | mRNA | 54710099 | 54712623 | 54710099 | ID=MS.gene004686.t1;Parent=MS.gene004686 |
| chr1.1 | exon | 54710099 | 54710452 | 54710099 | ID=MS.gene004686.t1.exon1;Parent=MS.gene004686.t1 |
| chr1.1 | CDS | 54710099 | 54710452 | 54710099 | ID=cds.MS.gene004686.t1;Parent=MS.gene004686.t1 |
| chr1.1 | exon | 54710566 | 54710652 | 54710566 | ID=MS.gene004686.t1.exon2;Parent=MS.gene004686.t1 |
| chr1.1 | CDS | 54710566 | 54710652 | 54710566 | ID=cds.MS.gene004686.t1;Parent=MS.gene004686.t1 |
| chr1.1 | exon | 54711205 | 54711363 | 54711205 | ID=MS.gene004686.t1.exon3;Parent=MS.gene004686.t1 |
| chr1.1 | CDS | 54711205 | 54711363 | 54711205 | ID=cds.MS.gene004686.t1;Parent=MS.gene004686.t1 |
| chr1.1 | exon | 54711537 | 54711602 | 54711537 | ID=MS.gene004686.t1.exon4;Parent=MS.gene004686.t1 |
| chr1.1 | CDS | 54711537 | 54711602 | 54711537 | ID=cds.MS.gene004686.t1;Parent=MS.gene004686.t1 |
| chr1.1 | exon | 54711754 | 54711819 | 54711754 | ID=MS.gene004686.t1.exon5;Parent=MS.gene004686.t1 |
| chr1.1 | CDS | 54711754 | 54711819 | 54711754 | ID=cds.MS.gene004686.t1;Parent=MS.gene004686.t1 |
| chr1.1 | exon | 54711969 | 54712028 | 54711969 | ID=MS.gene004686.t1.exon6;Parent=MS.gene004686.t1 |
| chr1.1 | CDS | 54711969 | 54712028 | 54711969 | ID=cds.MS.gene004686.t1;Parent=MS.gene004686.t1 |
| chr1.1 | exon | 54712438 | 54712623 | 54712438 | ID=MS.gene004686.t1.exon7;Parent=MS.gene004686.t1 |
| chr1.1 | CDS | 54712438 | 54712623 | 54712438 | ID=cds.MS.gene004686.t1;Parent=MS.gene004686.t1 |
| Gene Sequence |
| Protein sequence |
