Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004698.t1 | XP_003590706.2 | 99.3 | 148 | 1 | 0 | 1 | 148 | 1 | 148 | 1.00E-74 | 289.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004698.t1 | Q8VYK4 | 70.3 | 148 | 41 | 2 | 2 | 149 | 6 | 150 | 1.5e-50 | 200.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004698.t1 | B7FGV1 | 99.3 | 148 | 1 | 0 | 1 | 148 | 1 | 148 | 7.5e-75 | 289.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene004698.t1 | TF | NF-YB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004698.t1 | MTR_1g072790 | 99.324 | 148 | 1 | 0 | 1 | 148 | 1 | 148 | 1.72e-108 | 306 |
MS.gene004698.t1 | MTR_7g061270 | 78.358 | 134 | 24 | 3 | 11 | 143 | 12 | 141 | 1.13e-71 | 213 |
MS.gene004698.t1 | MTR_7g100650 | 80.315 | 127 | 21 | 2 | 11 | 137 | 12 | 134 | 2.09e-71 | 212 |
MS.gene004698.t1 | MTR_5g095740 | 68.939 | 132 | 35 | 1 | 1 | 132 | 1 | 126 | 3.00e-62 | 189 |
MS.gene004698.t1 | MTR_3g058980 | 67.883 | 137 | 39 | 2 | 1 | 134 | 1 | 135 | 1.48e-61 | 188 |
MS.gene004698.t1 | MTR_2g026710 | 65.693 | 137 | 35 | 2 | 9 | 145 | 3 | 127 | 1.84e-60 | 184 |
MS.gene004698.t1 | MTR_8g091720 | 68.644 | 118 | 29 | 1 | 17 | 126 | 8 | 125 | 1.80e-55 | 172 |
MS.gene004698.t1 | MTR_4g133938 | 68.908 | 119 | 34 | 2 | 22 | 138 | 10 | 127 | 3.40e-54 | 167 |
MS.gene004698.t1 | MTR_8g093920 | 72.632 | 95 | 26 | 0 | 28 | 122 | 39 | 133 | 4.72e-52 | 164 |
MS.gene004698.t1 | MTR_0392s0020 | 68.571 | 105 | 29 | 1 | 22 | 122 | 7 | 111 | 2.29e-50 | 157 |
MS.gene004698.t1 | MTR_4g119500 | 66.019 | 103 | 35 | 0 | 28 | 130 | 21 | 123 | 8.92e-50 | 156 |
MS.gene004698.t1 | MTR_4g133952 | 63.063 | 111 | 37 | 1 | 16 | 122 | 41 | 151 | 1.13e-48 | 157 |
MS.gene004698.t1 | MTR_1g088860 | 69.474 | 95 | 29 | 0 | 28 | 122 | 35 | 129 | 2.11e-48 | 154 |
MS.gene004698.t1 | MTR_1g039040 | 59.223 | 103 | 42 | 0 | 28 | 130 | 5 | 107 | 1.48e-44 | 144 |
MS.gene004698.t1 | MTR_1g083070 | 58.696 | 92 | 38 | 0 | 29 | 120 | 4 | 95 | 8.22e-38 | 125 |
MS.gene004698.t1 | MTR_1g029070 | 48.485 | 99 | 51 | 0 | 27 | 125 | 50 | 148 | 5.17e-30 | 107 |
MS.gene004698.t1 | MTR_5g095900 | 44.330 | 97 | 54 | 0 | 22 | 118 | 9 | 105 | 3.44e-23 | 90.1 |
MS.gene004698.t1 | MTR_2g056000 | 33.858 | 127 | 81 | 2 | 8 | 134 | 21 | 144 | 5.52e-20 | 82.0 |
MS.gene004698.t1 | MTR_1g028480 | 59.649 | 57 | 23 | 0 | 64 | 120 | 24 | 80 | 1.21e-19 | 79.0 |
MS.gene004698.t1 | MTR_1g029100 | 40.789 | 76 | 45 | 0 | 34 | 109 | 7 | 82 | 1.39e-19 | 78.2 |
MS.gene004698.t1 | MTR_4g112380 | 41.176 | 85 | 48 | 1 | 30 | 114 | 12 | 94 | 1.20e-17 | 75.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004698.t1 | AT2G37060 | 70.270 | 148 | 41 | 2 | 2 | 149 | 6 | 150 | 2.17e-71 | 212 |
MS.gene004698.t1 | AT2G37060 | 70.270 | 148 | 41 | 2 | 2 | 149 | 6 | 150 | 2.17e-71 | 212 |
MS.gene004698.t1 | AT2G37060 | 70.270 | 148 | 41 | 2 | 2 | 149 | 6 | 150 | 2.17e-71 | 212 |
MS.gene004698.t1 | AT2G38880 | 70.667 | 150 | 33 | 3 | 1 | 149 | 1 | 140 | 2.09e-69 | 206 |
MS.gene004698.t1 | AT2G38880 | 71.918 | 146 | 30 | 3 | 1 | 145 | 1 | 136 | 5.37e-69 | 205 |
MS.gene004698.t1 | AT2G38880 | 71.918 | 146 | 30 | 3 | 1 | 145 | 1 | 136 | 5.37e-69 | 205 |
MS.gene004698.t1 | AT2G38880 | 71.918 | 146 | 30 | 3 | 1 | 145 | 1 | 136 | 5.37e-69 | 205 |
MS.gene004698.t1 | AT3G53340 | 74.436 | 133 | 29 | 2 | 17 | 149 | 19 | 146 | 3.27e-67 | 202 |
MS.gene004698.t1 | AT3G53340 | 74.436 | 133 | 29 | 2 | 17 | 149 | 19 | 146 | 3.27e-67 | 202 |
MS.gene004698.t1 | AT2G38880 | 70.548 | 146 | 30 | 4 | 1 | 145 | 1 | 134 | 1.39e-65 | 196 |
MS.gene004698.t1 | AT2G38880 | 62.130 | 169 | 30 | 4 | 1 | 145 | 1 | 159 | 2.46e-63 | 191 |
MS.gene004698.t1 | AT2G38880 | 62.130 | 169 | 30 | 4 | 1 | 145 | 1 | 159 | 2.46e-63 | 191 |
MS.gene004698.t1 | AT4G14540 | 71.311 | 122 | 27 | 2 | 1 | 122 | 1 | 114 | 7.47e-61 | 185 |
MS.gene004698.t1 | AT2G38880 | 75.000 | 120 | 20 | 2 | 1 | 119 | 1 | 111 | 1.77e-60 | 182 |
MS.gene004698.t1 | AT3G53340 | 83.654 | 104 | 15 | 1 | 17 | 120 | 19 | 120 | 5.00e-60 | 182 |
MS.gene004698.t1 | AT3G53340 | 83.654 | 104 | 15 | 1 | 17 | 120 | 19 | 120 | 5.00e-60 | 182 |
MS.gene004698.t1 | AT5G47640 | 80.952 | 105 | 20 | 0 | 28 | 132 | 26 | 130 | 5.67e-60 | 184 |
MS.gene004698.t1 | AT3G53340 | 83.495 | 103 | 15 | 1 | 17 | 119 | 19 | 119 | 6.02e-60 | 181 |
MS.gene004698.t1 | AT2G38880 | 75.630 | 119 | 21 | 2 | 1 | 119 | 1 | 111 | 1.21e-59 | 182 |
MS.gene004698.t1 | AT2G38880 | 75.630 | 119 | 21 | 2 | 1 | 119 | 1 | 111 | 1.21e-59 | 182 |
MS.gene004698.t1 | AT2G38880 | 75.630 | 119 | 21 | 2 | 1 | 119 | 1 | 111 | 1.21e-59 | 182 |
MS.gene004698.t1 | AT2G13570 | 62.791 | 129 | 39 | 2 | 9 | 128 | 7 | 135 | 8.55e-54 | 169 |
MS.gene004698.t1 | AT5G47670 | 61.818 | 110 | 37 | 1 | 28 | 132 | 28 | 137 | 3.97e-48 | 154 |
MS.gene004698.t1 | AT2G47810 | 67.677 | 99 | 32 | 0 | 24 | 122 | 46 | 144 | 7.98e-48 | 152 |
MS.gene004698.t1 | AT5G47670 | 61.818 | 110 | 37 | 1 | 28 | 132 | 57 | 166 | 8.21e-48 | 154 |
MS.gene004698.t1 | AT5G47670 | 61.818 | 110 | 37 | 1 | 28 | 132 | 57 | 166 | 8.21e-48 | 154 |
MS.gene004698.t1 | AT1G21970 | 54.310 | 116 | 52 | 1 | 26 | 141 | 56 | 170 | 4.05e-45 | 147 |
MS.gene004698.t1 | AT1G09030 | 52.830 | 106 | 50 | 0 | 29 | 134 | 3 | 108 | 4.52e-40 | 132 |
MS.gene004698.t1 | AT5G08190 | 36.538 | 104 | 66 | 0 | 29 | 132 | 11 | 114 | 7.62e-20 | 80.9 |
MS.gene004698.t1 | AT5G08190 | 38.462 | 104 | 63 | 1 | 30 | 132 | 12 | 115 | 1.90e-19 | 80.1 |
MS.gene004698.t1 | AT5G23090 | 34.615 | 104 | 68 | 0 | 30 | 133 | 12 | 115 | 8.88e-19 | 78.2 |
MS.gene004698.t1 | AT5G23090 | 36.190 | 105 | 66 | 1 | 30 | 133 | 12 | 116 | 2.28e-18 | 77.0 |
MS.gene004698.t1 | AT5G23090 | 36.190 | 105 | 66 | 1 | 30 | 133 | 12 | 116 | 2.28e-18 | 77.0 |
MS.gene004698.t1 | AT5G23090 | 36.190 | 105 | 66 | 1 | 30 | 133 | 12 | 116 | 2.28e-18 | 77.0 |
MS.gene004698.t1 | AT5G23090 | 35.955 | 89 | 56 | 1 | 46 | 133 | 15 | 103 | 6.86e-14 | 65.1 |
Find 29 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGTCTTTCTCTTCTCTTTC+TGG | 0.035702 | 1.1:+54900786 | None:intergenic |
GAGAAGAGAAAGACCATTAA+TGG | 0.272230 | 1.1:-54900779 | MS.gene004698:CDS |
TAACAAATCATCTCCATTAA+TGG | 0.277036 | 1.1:+54900766 | None:intergenic |
TTATGGGCTATGGCTACTTT+AGG | 0.294228 | 1.1:-54900746 | MS.gene004698:CDS |
TAATGGAGATGATTTGTTAT+GGG | 0.363879 | 1.1:-54900762 | MS.gene004698:CDS |
TTAATGGAGATGATTTGTTA+TGG | 0.386568 | 1.1:-54900763 | MS.gene004698:CDS |
TCTCGTGGCTTTCTTCGCAT+TGG | 0.434390 | 1.1:+54901443 | None:intergenic |
GACCTGGAGGACCGCCAACT+TGG | 0.437143 | 1.1:+54900399 | None:intergenic |
CTTGCTAGGTACACCTTAAG+TGG | 0.449127 | 1.1:+54900704 | None:intergenic |
GACCAAGTTGGCGGTCCTCC+AGG | 0.458458 | 1.1:-54900401 | MS.gene004698:CDS |
ATTCTGCTAATGTTAGCTAT+AGG | 0.459912 | 1.1:+54901358 | None:intergenic |
TGGCTTTCTTCGCATTGGTT+CGG | 0.462126 | 1.1:+54901448 | None:intergenic |
AGACTATATAGAACCACTTA+AGG | 0.485870 | 1.1:-54900717 | MS.gene004698:CDS |
AGATGATTTGTTATGGGCTA+TGG | 0.505790 | 1.1:-54900756 | MS.gene004698:CDS |
TCCTCCAGGTCAAAATGCTC+AGG | 0.507423 | 1.1:-54900387 | MS.gene004698:CDS |
GTTAGAAACAGTGATGGATC+TGG | 0.524015 | 1.1:-54900431 | MS.gene004698:CDS |
TTGGTTCGGTGCATCTGCCA+TGG | 0.526473 | 1.1:+54901462 | None:intergenic |
TTACCTCTCTGAACCTTGCT+AGG | 0.526654 | 1.1:+54900690 | None:intergenic |
TTCTGATAGGGTGATAGTAA+AGG | 0.555051 | 1.1:-54900458 | MS.gene004698:intron |
CACTTAAGGTGTACCTAGCA+AGG | 0.580922 | 1.1:-54900703 | MS.gene004698:CDS |
GGATCTGTTAGAAACAGTGA+TGG | 0.605861 | 1.1:-54900437 | MS.gene004698:CDS |
TCTGTTCACCACCACTCTCG+TGG | 0.616032 | 1.1:+54901428 | None:intergenic |
TGCGAAGAAAGCCACGAGAG+TGG | 0.627075 | 1.1:-54901439 | MS.gene004698:CDS |
GGTAGACGAGACCAAGTTGG+CGG | 0.631551 | 1.1:-54900410 | MS.gene004698:CDS |
TCTGGTAGACGAGACCAAGT+TGG | 0.636481 | 1.1:-54900413 | MS.gene004698:CDS |
GAAGAAAGCCACGAGAGTGG+TGG | 0.673522 | 1.1:-54901436 | MS.gene004698:CDS |
GGTGGTGAACAGAGTCCACG+TGG | 0.738315 | 1.1:-54901418 | MS.gene004698:CDS |
GAAGCAGAAGAAGAGCCACG+TGG | 0.770183 | 1.1:+54901403 | None:intergenic |
GTACCTAGCAAGGTTCAGAG+AGG | 0.773002 | 1.1:-54900693 | MS.gene004698:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTAATATAAATTTCAGTTAT+TGG | - | chr1.1:54900711-54900730 | MS.gene004698:CDS | 15.0% |
!!! | AATAAAAAATACTATGGTTT+TGG | + | chr1.1:54900622-54900641 | None:intergenic | 15.0% |
!!! | ATATAATAAATTGTGGTTTT+TGG | - | chr1.1:54900883-54900902 | MS.gene004698:intron | 15.0% |
!! | AAAATAATACAATCAATCAG+AGG | + | chr1.1:54901309-54901328 | None:intergenic | 20.0% |
!! | AAATAATACAATCAATCAGA+GGG | + | chr1.1:54901308-54901327 | None:intergenic | 20.0% |
!! | AGTTGAAAAATGCTTAAAAA+TGG | - | chr1.1:54900663-54900682 | MS.gene004698:intron | 20.0% |
!! | ATGGGTAATATAATAAATTG+TGG | - | chr1.1:54900876-54900895 | MS.gene004698:intron | 20.0% |
!! | TTGTCAATTTATATGATGTT+TGG | - | chr1.1:54900945-54900964 | MS.gene004698:intron | 20.0% |
! | AAAAAAGCTTTACCTTCAAA+TGG | - | chr1.1:54900511-54900530 | MS.gene004698:intron | 25.0% |
! | AAAAAGCTTTACCTTCAAAT+GGG | - | chr1.1:54900512-54900531 | MS.gene004698:intron | 25.0% |
! | AAATTTCAGTTATTGGCATT+TGG | - | chr1.1:54900718-54900737 | MS.gene004698:CDS | 25.0% |
! | AATAATACAATCAATCAGAG+GGG | + | chr1.1:54901307-54901326 | None:intergenic | 25.0% |
! | AATTTCAGTTATTGGCATTT+GGG | - | chr1.1:54900719-54900738 | MS.gene004698:CDS | 25.0% |
! | ATATTACCCATCTAAAAAGA+GGG | + | chr1.1:54900867-54900886 | None:intergenic | 25.0% |
! | CCATAAAGAACATTATCAAA+TGG | + | chr1.1:54901197-54901216 | None:intergenic | 25.0% |
! | TAACAAATCATCTCCATTAA+TGG | + | chr1.1:54901079-54901098 | None:intergenic | 25.0% |
! | TATATTACCCATCTAAAAAG+AGG | + | chr1.1:54900868-54900887 | None:intergenic | 25.0% |
! | TTGCTAATTTATATGATGCT+GGG | - | chr1.1:54900772-54900791 | MS.gene004698:CDS | 25.0% |
! | TTTGCTAATTTATATGATGC+TGG | - | chr1.1:54900771-54900790 | MS.gene004698:CDS | 25.0% |
!! | TTTTATGCTCTCTTTTAGAT+AGG | - | chr1.1:54900689-54900708 | MS.gene004698:intron | 25.0% |
!! | TTTTTACCCTCTTTTTAGAT+GGG | - | chr1.1:54900858-54900877 | MS.gene004698:intron | 25.0% |
!!! | AAATACTATGGTTTTGGAAT+TGG | + | chr1.1:54900616-54900635 | None:intergenic | 25.0% |
!!! | AATACTATGGTTTTGGAATT+GGG | + | chr1.1:54900615-54900634 | None:intergenic | 25.0% |
!!! | ATGTTTGGTGAAAATCTTTT+AGG | - | chr1.1:54900960-54900979 | MS.gene004698:intron | 25.0% |
!!! | CCATTTGATAATGTTCTTTA+TGG | - | chr1.1:54901194-54901213 | MS.gene004698:intron | 25.0% |
!!! | TAATGGAGATGATTTGTTAT+GGG | - | chr1.1:54901080-54901099 | MS.gene004698:intron | 25.0% |
!!! | TGTTTGGTGAAAATCTTTTA+GGG | - | chr1.1:54900961-54900980 | MS.gene004698:intron | 25.0% |
!!! | TTAATGGAGATGATTTGTTA+TGG | - | chr1.1:54901079-54901098 | MS.gene004698:intron | 25.0% |
!!! | TTTTTGTTTGTTGTCTGAAT+TGG | - | chr1.1:54900992-54901011 | MS.gene004698:intron | 25.0% |
!!! | TTTTTTACCCTCTTTTTAGA+TGG | - | chr1.1:54900857-54900876 | MS.gene004698:intron | 25.0% |
AGACTATATAGAACCACTTA+AGG | - | chr1.1:54901125-54901144 | MS.gene004698:intron | 30.0% | |
ATTCTGCTAATGTTAGCTAT+AGG | + | chr1.1:54900487-54900506 | None:intergenic | 30.0% | |
! | GAATTGGAAATGGATGTTTT+GGG | - | chr1.1:54901008-54901027 | MS.gene004698:intron | 30.0% |
! | TGAATTGGAAATGGATGTTT+TGG | - | chr1.1:54901007-54901026 | MS.gene004698:intron | 30.0% |
! | TTTGTTGTCTGAATTGGAAA+TGG | - | chr1.1:54900998-54901017 | MS.gene004698:intron | 30.0% |
CTAATTTATATGATGCTGGG+TGG | - | chr1.1:54900775-54900794 | MS.gene004698:CDS | 35.0% | |
GAGAAGAGAAAGACCATTAA+TGG | - | chr1.1:54901063-54901082 | MS.gene004698:intron | 35.0% | |
TCGACATTTCAAAATCACCA+GGG | + | chr1.1:54901253-54901272 | None:intergenic | 35.0% | |
TTATTGGCATTTGGGTCTAT+TGG | - | chr1.1:54900727-54900746 | MS.gene004698:CDS | 35.0% | |
TTCTGATAGGGTGATAGTAA+AGG | - | chr1.1:54901384-54901403 | MS.gene004698:CDS | 35.0% | |
! | GCTGGGTGGAAAATATTTTA+GGG | - | chr1.1:54900789-54900808 | MS.gene004698:CDS | 35.0% |
! | TGCTGGGTGGAAAATATTTT+AGG | - | chr1.1:54900788-54900807 | MS.gene004698:CDS | 35.0% |
! | TTCGCAATTTTCCCATTTGA+AGG | + | chr1.1:54900526-54900545 | None:intergenic | 35.0% |
!! | AGATGATTTGTTATGGGCTA+TGG | - | chr1.1:54901086-54901105 | MS.gene004698:intron | 35.0% |
!!! | ATTGTGGTTTTTGGCAAATG+TGG | - | chr1.1:54900892-54900911 | MS.gene004698:intron | 35.0% |
!!! | TGGTGATTTTGAAATGTCGA+CGG | - | chr1.1:54901253-54901272 | MS.gene004698:intron | 35.0% |
AATACAATCAATCAGAGGGG+AGG | + | chr1.1:54901304-54901323 | None:intergenic | 40.0% | |
ACCTTAGACTATCTTGCCAA+TGG | - | chr1.1:54901336-54901355 | MS.gene004698:CDS | 40.0% | |
CACAGATGTTAGCATTCCAT+TGG | + | chr1.1:54901355-54901374 | None:intergenic | 40.0% | |
CCAGGGAAGAAGGAAAAAAA+CGG | + | chr1.1:54901236-54901255 | None:intergenic | 40.0% | |
GGATCTGTTAGAAACAGTGA+TGG | - | chr1.1:54901405-54901424 | MS.gene004698:CDS | 40.0% | |
GTCGACATTTCAAAATCACC+AGG | + | chr1.1:54901254-54901273 | None:intergenic | 40.0% | |
TATCACCCTATCAGAAACCA+TGG | + | chr1.1:54901380-54901399 | None:intergenic | 40.0% | |
TCCATTGGCAAGATAGTCTA+AGG | + | chr1.1:54901340-54901359 | None:intergenic | 40.0% | |
TGGTCTTTCTCTTCTCTTTC+TGG | + | chr1.1:54901059-54901078 | None:intergenic | 40.0% | |
TTCAAAATCACCAGGGAAGA+AGG | + | chr1.1:54901246-54901265 | None:intergenic | 40.0% | |
! | TTATGGGCTATGGCTACTTT+AGG | - | chr1.1:54901096-54901115 | MS.gene004698:intron | 40.0% |
!! | GTTAGAAACAGTGATGGATC+TGG | - | chr1.1:54901411-54901430 | MS.gene004698:CDS | 40.0% |
!! | TGGAAATGGATGTTTTGGGT+TGG | - | chr1.1:54901012-54901031 | MS.gene004698:intron | 40.0% |
!!! | GATGTTTTGGGTTGGTTGTA+GGG | - | chr1.1:54901020-54901039 | MS.gene004698:intron | 40.0% |
ATGCTAACATCTGTGAGCCA+TGG | - | chr1.1:54901360-54901379 | MS.gene004698:CDS | 45.0% | |
CACTTAAGGTGTACCTAGCA+AGG | - | chr1.1:54901139-54901158 | MS.gene004698:intron | 45.0% | |
CTTGCTAGGTACACCTTAAG+TGG | + | chr1.1:54901141-54901160 | None:intergenic | 45.0% | |
GTGAGCCATGGTTTCTGATA+GGG | - | chr1.1:54901372-54901391 | MS.gene004698:CDS | 45.0% | |
TCGACGGATATCACAGTTAG+AGG | - | chr1.1:54901269-54901288 | MS.gene004698:CDS | 45.0% | |
TGTGAGCCATGGTTTCTGAT+AGG | - | chr1.1:54901371-54901390 | MS.gene004698:CDS | 45.0% | |
TTACCTCTCTGAACCTTGCT+AGG | + | chr1.1:54901155-54901174 | None:intergenic | 45.0% | |
!! | TGGCTTTCTTCGCATTGGTT+CGG | + | chr1.1:54900397-54900416 | None:intergenic | 45.0% |
!!! | CCGTTTTTTTCCTTCTTCCC+TGG | - | chr1.1:54901233-54901252 | MS.gene004698:intron | 45.0% |
!!! | GGATGTTTTGGGTTGGTTGT+AGG | - | chr1.1:54901019-54901038 | MS.gene004698:intron | 45.0% |
!! | TAAAAAAATAAAAAATACTA+TGG | + | chr1.1:54900628-54900647 | None:intergenic | 5.0% |
GTACCTAGCAAGGTTCAGAG+AGG | - | chr1.1:54901149-54901168 | MS.gene004698:intron | 50.0% | |
TCCTCCAGGTCAAAATGCTC+AGG | - | chr1.1:54901455-54901474 | MS.gene004698:CDS | 50.0% | |
TCTCGTGGCTTTCTTCGCAT+TGG | + | chr1.1:54900402-54900421 | None:intergenic | 50.0% | |
TCTGGTAGACGAGACCAAGT+TGG | - | chr1.1:54901429-54901448 | MS.gene004698:CDS | 50.0% | |
!! | ACCTGAGCATTTTGACCTGG+AGG | + | chr1.1:54901459-54901478 | None:intergenic | 50.0% |
!! | CACACCTGAGCATTTTGACC+TGG | + | chr1.1:54901462-54901481 | None:intergenic | 50.0% |
GAAGAAAGCCACGAGAGTGG+TGG | - | chr1.1:54900406-54900425 | MS.gene004698:CDS | 55.0% | |
GAAGCAGAAGAAGAGCCACG+TGG | + | chr1.1:54900442-54900461 | None:intergenic | 55.0% | |
TCTGTTCACCACCACTCTCG+TGG | + | chr1.1:54900417-54900436 | None:intergenic | 55.0% | |
TGCGAAGAAAGCCACGAGAG+TGG | - | chr1.1:54900403-54900422 | MS.gene004698:CDS | 55.0% | |
TGGAATTGGGTCTCACTCGC+TGG | + | chr1.1:54900602-54900621 | None:intergenic | 55.0% | |
! | GGTAGACGAGACCAAGTTGG+CGG | - | chr1.1:54901432-54901451 | MS.gene004698:CDS | 55.0% |
GGTGGTGAACAGAGTCCACG+TGG | - | chr1.1:54900424-54900443 | MS.gene004698:CDS | 60.0% | |
GACCTGGAGGACCGCCAACT+TGG | + | chr1.1:54901446-54901465 | None:intergenic | 65.0% | |
! | GACCAAGTTGGCGGTCCTCC+AGG | - | chr1.1:54901441-54901460 | MS.gene004698:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 54900382 | 54901482 | 54900382 | ID=MS.gene004698 |
chr1.1 | mRNA | 54900382 | 54901482 | 54900382 | ID=MS.gene004698.t1;Parent=MS.gene004698 |
chr1.1 | exon | 54901259 | 54901482 | 54901259 | ID=MS.gene004698.t1.exon1;Parent=MS.gene004698.t1 |
chr1.1 | CDS | 54901259 | 54901482 | 54901259 | ID=cds.MS.gene004698.t1;Parent=MS.gene004698.t1 |
chr1.1 | exon | 54900694 | 54900823 | 54900694 | ID=MS.gene004698.t1.exon2;Parent=MS.gene004698.t1 |
chr1.1 | CDS | 54900694 | 54900823 | 54900694 | ID=cds.MS.gene004698.t1;Parent=MS.gene004698.t1 |
chr1.1 | exon | 54900574 | 54900579 | 54900574 | ID=MS.gene004698.t1.exon3;Parent=MS.gene004698.t1 |
chr1.1 | CDS | 54900574 | 54900579 | 54900574 | ID=cds.MS.gene004698.t1;Parent=MS.gene004698.t1 |
chr1.1 | exon | 54900382 | 54900471 | 54900382 | ID=MS.gene004698.t1.exon4;Parent=MS.gene004698.t1 |
chr1.1 | CDS | 54900382 | 54900471 | 54900382 | ID=cds.MS.gene004698.t1;Parent=MS.gene004698.t1 |
Gene Sequence |
Protein sequence |