AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene004736

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004736.t1 MTR_1g073350 99.518 415 1 1 1 415 1 414 0.0 842
MS.gene004736.t1 MTR_1g044785 72.881 236 54 4 181 415 4 230 1.67e-113 332
MS.gene004736.t1 MTR_8g098725 39.873 158 73 5 209 361 133 273 1.34e-23 100
MS.gene004736.t1 MTR_8g098725 35.545 211 104 7 209 409 133 321 1.55e-23 100
MS.gene004736.t1 MTR_2g068730 56.164 73 32 0 298 370 144 216 3.38e-21 92.8
MS.gene004736.t1 MTR_5g010120 56.944 72 31 0 289 360 145 216 7.93e-20 88.6
MS.gene004736.t1 MTR_2g096080 45.918 98 51 1 265 362 105 200 2.56e-19 87.4
MS.gene004736.t1 MTR_4g061823 43.878 98 54 1 265 362 94 190 9.27e-19 85.5
MS.gene004736.t1 MTR_4g061910 43.878 98 54 1 265 362 94 190 9.27e-19 85.5
MS.gene004736.t1 MTR_1g008220 36.296 135 69 4 229 362 159 277 1.67e-16 79.7
MS.gene004736.t1 MTR_3g091340 65.306 49 17 0 313 361 197 245 3.90e-15 75.1
MS.gene004736.t1 MTR_3g091340 65.306 49 17 0 313 361 190 238 4.09e-15 75.1
MS.gene004736.t1 MTR_3g091340 65.306 49 17 0 313 361 226 274 7.68e-15 74.7
MS.gene004736.t1 MTR_3g105710 42.308 78 39 1 288 365 209 280 4.26e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004736.t1 AT1G04500 51.544 421 145 15 9 415 2 377 2.31e-120 355
MS.gene004736.t1 AT1G04500 51.544 421 145 15 9 415 11 386 8.36e-120 353
MS.gene004736.t1 AT1G04500 51.544 421 145 15 9 415 11 386 8.36e-120 353
MS.gene004736.t1 AT2G33350 49.296 426 160 16 13 415 17 409 1.04e-102 311
MS.gene004736.t1 AT2G33350 49.296 426 160 16 13 415 6 398 1.72e-102 310
MS.gene004736.t1 AT2G33350 49.296 426 160 16 13 415 26 418 4.20e-102 310
MS.gene004736.t1 AT2G33350 48.712 427 162 16 13 415 17 410 6.64e-101 306
MS.gene004736.t1 AT1G04500 45.930 344 127 15 9 338 11 309 9.19e-72 230
MS.gene004736.t1 AT2G33350 43.391 348 142 15 13 338 17 331 7.58e-61 201
MS.gene004736.t1 AT5G41380 56.250 96 33 3 266 361 173 259 1.08e-23 100
MS.gene004736.t1 AT1G63820 40.833 120 69 1 264 381 137 256 2.46e-23 99.8
MS.gene004736.t1 AT3G12890 52.809 89 36 1 308 396 130 212 3.42e-22 95.5
MS.gene004736.t1 AT4G27900 38.144 97 45 2 266 362 178 259 4.93e-16 78.2
MS.gene004736.t1 AT4G27900 38.144 97 45 2 266 362 178 259 4.93e-16 78.2
MS.gene004736.t1 AT5G53420 41.667 96 38 2 266 361 106 183 3.11e-15 73.9
MS.gene004736.t1 AT5G53420 41.667 96 38 2 266 361 106 183 3.11e-15 73.9
MS.gene004736.t1 AT5G53420 41.667 96 38 2 266 361 106 183 3.11e-15 73.9
MS.gene004736.t1 AT5G59990 39.850 133 63 3 265 397 120 235 3.45e-15 75.1
MS.gene004736.t1 AT5G53420 65.957 47 16 0 315 361 216 262 6.63e-15 74.7

Find 75 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCCAAGTTTGAGATTTC+TGG 0.139924 1.1:+55533872 None:intergenic
TTTGCAAAGAATGATGATTT+TGG 0.194304 1.1:-55533530 MS.gene004736:CDS
TGATTCAGTTGCACCTCTTA+TGG 0.196419 1.1:-55535038 MS.gene004736:CDS
TCAGAATTCTGCAAAGCTTC+TGG 0.225403 1.1:+55535448 None:intergenic
TCCTGTAAACATTGATATAA+AGG 0.285030 1.1:+55535529 None:intergenic
GTTTAACCCTCCTGACCTTC+AGG 0.295741 1.1:-55534738 MS.gene004736:intron
TCTCCTTCTTGCAATTATCT+TGG 0.304557 1.1:-55534935 MS.gene004736:CDS
TGGTTTGTTTGGTGGAAATA+TGG 0.310217 1.1:-55534846 MS.gene004736:CDS
TCCTTTATATCAATGTTTAC+AGG 0.317206 1.1:-55535530 MS.gene004736:CDS
TCGAAAATTCGAGCGCTAAG+AGG 0.329398 1.1:+55535493 None:intergenic
TGATAGATTATTGCTATTGT+TGG 0.330238 1.1:+55535270 None:intergenic
ACTGATAGTTCTGGTTTGTT+TGG 0.336862 1.1:-55534857 MS.gene004736:CDS
TAATATATTTGTTGCATATG+AGG 0.345362 1.1:+55535387 None:intergenic
GATTCAGTTGCACCTCTTAT+GGG 0.348322 1.1:-55535037 MS.gene004736:CDS
GCTTTGTCTACTGATAGTTC+TGG 0.348575 1.1:-55534866 MS.gene004736:CDS
AAACTTCAGCAAGAAAATTA+AGG 0.349765 1.1:-55533768 MS.gene004736:intron
CTTGGAAGACTCCACTTTCA+AGG 0.364962 1.1:-55533858 MS.gene004736:CDS
AAAACAGGTGGTAATGATAA+AGG 0.370742 1.1:+55535010 None:intergenic
CTTGATTATCAAGGAGATAA+TGG 0.371169 1.1:-55534794 MS.gene004736:CDS
AGAGGTGCAACTGAATCATT+TGG 0.378768 1.1:+55535043 None:intergenic
GCTACTAGTTGTTGATTCTC+AGG 0.396916 1.1:+55533923 None:intergenic
ATATTGTTGTTTGTGCTAGT+TGG 0.401414 1.1:+55535310 None:intergenic
CAGAATTCTGCAAAGCTTCT+GGG 0.401559 1.1:+55535449 None:intergenic
GATAGCAGACCTCGAGTTAG+AGG 0.402793 1.1:-55533557 MS.gene004736:CDS
GGGTTAAACACCCTCTGAAT+AGG 0.414662 1.1:+55534752 None:intergenic
AATGGAATAGTTGCATTTGA+AGG 0.424110 1.1:+55533162 None:intergenic
TGCAATTATCTTGGTCCTGC+CGG 0.431147 1.1:-55534926 MS.gene004736:CDS
GCAACTATTCCATTCAATCA+TGG 0.437657 1.1:-55533153 MS.gene004736:CDS
GATAGTTCTGGTTTGTTTGG+TGG 0.449481 1.1:-55534854 MS.gene004736:CDS
TAATTGCAAGAAGGAGAAGA+AGG 0.453970 1.1:+55534941 None:intergenic
ACAGCATGTTCATCCGTTGA+TGG 0.462537 1.1:-55535085 MS.gene004736:CDS
TTATCTTGGTCCTGCCGGTA+TGG 0.463392 1.1:-55534921 MS.gene004736:CDS
TGTGAAAGAGGAAGATGATA+TGG 0.463481 1.1:-55533227 MS.gene004736:CDS
GACACCAGAAATCTCAAACT+TGG 0.464943 1.1:-55533876 MS.gene004736:CDS
CGAAAATTCGAGCGCTAAGA+GGG 0.464964 1.1:+55535494 None:intergenic
TGAAGAAGAAGATGAAGAAG+AGG 0.466581 1.1:-55533477 MS.gene004736:intron
GAAGACTCCACTTTCAAGGT+TGG 0.473074 1.1:-55533854 MS.gene004736:CDS
ACAGTCAATACCTGAAGGTC+AGG 0.480367 1.1:+55534728 None:intergenic
GAATCAAATCCATGATTGAA+TGG 0.483820 1.1:+55533144 None:intergenic
CAGCATGTTCATCCGTTGAT+GGG 0.484565 1.1:-55535084 MS.gene004736:CDS
GCAGTAGTAAGAGAACCATT+AGG 0.493364 1.1:+55534887 None:intergenic
ATGGCGGCATACATGCCTAA+TGG 0.504835 1.1:-55534902 MS.gene004736:CDS
GATAAAGGAGCTCCCATAAG+AGG 0.508957 1.1:+55535025 None:intergenic
GTATGCATGCCGCAAAACTC+TGG 0.514757 1.1:-55533582 MS.gene004736:CDS
TTGTCCTGATCCTATTCAGA+GGG 0.518686 1.1:-55534762 MS.gene004736:CDS
AACACCCTCTGAATAGGATC+AGG 0.520235 1.1:+55534758 None:intergenic
AATGAAGGAACATTGAAAGA+TGG 0.520786 1.1:+55535181 None:intergenic
ATGTATGCCGCCATACCGGC+AGG 0.531779 1.1:+55534911 None:intergenic
ACTACAGGTAGTTGTGAAAG+AGG 0.540728 1.1:-55533239 MS.gene004736:intron
GAGAATCAACAACTAGTAGC+TGG 0.540899 1.1:-55533920 MS.gene004736:CDS
ACACAAGAACTTGATTATCA+AGG 0.541577 1.1:-55534803 MS.gene004736:CDS
GAAGGAGAAGAAGGGTTCAA+AGG 0.541723 1.1:+55534950 None:intergenic
GGGTTCAAAGGAACATAAGA+AGG 0.558201 1.1:+55534962 None:intergenic
GATATATTTGCTCATATCAG+TGG 0.567084 1.1:-55533193 MS.gene004736:CDS
AGGCATGTATGCCGCCATAC+CGG 0.574531 1.1:+55534907 None:intergenic
CAACAACTAGTAGCTGGTGC+TGG 0.575480 1.1:-55533914 MS.gene004736:CDS
GATGTGACTGGAAGGAATGA+AGG 0.578846 1.1:+55535166 None:intergenic
AATTGCAAGAAGGAGAAGAA+GGG 0.582488 1.1:+55534942 None:intergenic
ACTTGCTGTGATGATGTGAC+TGG 0.583948 1.1:+55535154 None:intergenic
TCTTGGTCCTGCCGGTATGG+CGG 0.591145 1.1:-55534918 MS.gene004736:CDS
AGAAGCTTTGCAGAATTCTG+AGG 0.591368 1.1:-55535446 MS.gene004736:CDS
GCAAATCTTCCTCTAACTCG+AGG 0.593646 1.1:+55533548 None:intergenic
GTCAATACCTGAAGGTCAGG+AGG 0.601952 1.1:+55534731 None:intergenic
ATTGTCCTGATCCTATTCAG+AGG 0.615011 1.1:-55534763 MS.gene004736:CDS
TGATAGTGAGAAATCTATTG+AGG 0.622836 1.1:+55535204 None:intergenic
GGACCAAGATAATTGCAAGA+AGG 0.631874 1.1:+55534932 None:intergenic
GATATGAGCAAATATATCTG+AGG 0.650959 1.1:+55533198 None:intergenic
TCAATACCTGAAGGTCAGGA+GGG 0.652626 1.1:+55534732 None:intergenic
GATACTAATAGAACTGCTAG+TGG 0.652698 1.1:-55533506 MS.gene004736:CDS
GCTGTGATGATGTGACTGGA+AGG 0.653513 1.1:+55535158 None:intergenic
ATACTGCGAAAACCCATCAA+CGG 0.666515 1.1:+55535072 None:intergenic
TGAGATTTCTGGTGTCAGAG+TGG 0.672060 1.1:+55533883 None:intergenic
TAAAGGAAATGTAAACAACA+TGG 0.694278 1.1:+55535546 None:intergenic
GCTGTAAGTTGAACATGATG+AGG 0.694850 1.1:+55535103 None:intergenic
TAGCAATAGCAATAACACAG+TGG 0.785267 1.1:-55535341 MS.gene004736:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAATGTTTCAAAAAT+CGG + chr1.1:55534406-55534425 None:intergenic 10.0%
!! AAAAAGGAAAAATACAAAAA+TGG + chr1.1:55534289-55534308 None:intergenic 15.0%
!! AATTTATATGTAACATGATA+AGG + chr1.1:55535000-55535019 None:intergenic 15.0%
!! TATCTACTTATTTATTTGAT+TGG - chr1.1:55535394-55535413 MS.gene004736:CDS 15.0%
!! TCATTCATTAAAAATAACTT+TGG + chr1.1:55534068-55534087 None:intergenic 15.0%
!! TTATAAGTTCATATTTAACT+TGG - chr1.1:55535291-55535310 MS.gene004736:CDS 15.0%
!!! ATAATGCTAATTTATTTTTC+AGG - chr1.1:55534737-55534756 MS.gene004736:intron 15.0%
!!! TGTTTTATCATCAATTTTAT+TGG + chr1.1:55534641-55534660 None:intergenic 15.0%
!!! TTAAAAATAACTTTGGAAAA+TGG + chr1.1:55534061-55534080 None:intergenic 15.0%
!! AAAAAAGTAGCATAGTATAT+TGG - chr1.1:55534585-55534604 MS.gene004736:intron 20.0%
!! AAAAATACAAAAATGGAAAC+CGG + chr1.1:55534282-55534301 None:intergenic 20.0%
!!! ATGCTACTTTTTTTTTTTGT+AGG + chr1.1:55534578-55534597 None:intergenic 20.0%
!!! TAATATATTTGTTGCATATG+AGG + chr1.1:55533307-55533326 None:intergenic 20.0%
!!! TTATTTTAAAGCTTTGTAAG+AGG - chr1.1:55534419-55534438 MS.gene004736:intron 20.0%
! AAACTTCAGCAAGAAAATTA+AGG - chr1.1:55534923-55534942 MS.gene004736:CDS 25.0%
! AAATGTTTCAAAAATCGGAT+TGG + chr1.1:55534401-55534420 None:intergenic 25.0%
! AACCAAATGAACAAGTAAAA+AGG + chr1.1:55534305-55534324 None:intergenic 25.0%
! AAGAACCATTCATATGAAAT+AGG + chr1.1:55534680-55534699 None:intergenic 25.0%
! AAGATTAACAACCTTATAGT+TGG + chr1.1:55534125-55534144 None:intergenic 25.0%
! ATATTGGCATATATTCTATG+AGG + chr1.1:55534500-55534519 None:intergenic 25.0%
! TATGAACTTATAAAGTGTGT+TGG + chr1.1:55535284-55535303 None:intergenic 25.0%
! TCCTGTAAACATTGATATAA+AGG + chr1.1:55533165-55533184 None:intergenic 25.0%
! TCCTTTATATCAATGTTTAC+AGG - chr1.1:55533161-55533180 MS.gene004736:CDS 25.0%
! TTTGTCATCCAATTCAATTA+TGG - chr1.1:55534326-55534345 MS.gene004736:intron 25.0%
!! GGTAATTTCTTTTTGCAAAA+AGG - chr1.1:55534440-55534459 MS.gene004736:intron 25.0%
!! TGATAGATTATTGCTATTGT+TGG + chr1.1:55533424-55533443 None:intergenic 25.0%
!! TTCCTTTTTACTTGTTCATT+TGG - chr1.1:55534300-55534319 MS.gene004736:intron 25.0%
!! TTTGCAAAGAATGATGATTT+TGG - chr1.1:55535161-55535180 MS.gene004736:CDS 25.0%
!!! TCAAGCAATGTTTTTAAAAC+TGG - chr1.1:55534152-55534171 MS.gene004736:intron 25.0%
AATGAAGGAACATTGAAAGA+TGG + chr1.1:55533513-55533532 None:intergenic 30.0%
AATGGAATAGTTGCATTTGA+AGG + chr1.1:55535532-55535551 None:intergenic 30.0%
ACACAAGAACTTGATTATCA+AGG - chr1.1:55533888-55533907 MS.gene004736:CDS 30.0%
ACTTTAGGTCATTGTTCAAT+TGG + chr1.1:55534366-55534385 None:intergenic 30.0%
AGTGTCCTATTTCATATGAA+TGG - chr1.1:55534672-55534691 MS.gene004736:intron 30.0%
CAGTTCAACCATAATTGAAT+TGG + chr1.1:55534337-55534356 None:intergenic 30.0%
CTTGATTATCAAGGAGATAA+TGG - chr1.1:55533897-55533916 MS.gene004736:CDS 30.0%
GATATATTTGCTCATATCAG+TGG - chr1.1:55535498-55535517 MS.gene004736:CDS 30.0%
GATATGAGCAAATATATCTG+AGG + chr1.1:55535496-55535515 None:intergenic 30.0%
TTATCTTCAGATTCAGATTC+TGG + chr1.1:55534718-55534737 None:intergenic 30.0%
! AAAACAGGTGGTAATGATAA+AGG + chr1.1:55533684-55533703 None:intergenic 30.0%
! ACGGACTACAATACAAAAAT+GGG + chr1.1:55534234-55534253 None:intergenic 30.0%
! CATTTGATAACTGTAACTAC+AGG - chr1.1:55535437-55535456 MS.gene004736:CDS 30.0%
! GTAAGCTTTTTACATATCTG+TGG + chr1.1:55534476-55534495 None:intergenic 30.0%
! GTCTAAAGTTTCCAACTATA+AGG - chr1.1:55534111-55534130 MS.gene004736:intron 30.0%
! TGATAGTGAGAAATCTATTG+AGG + chr1.1:55533490-55533509 None:intergenic 30.0%
! TTCTTTTTGCAAAAAGGTCA+TGG - chr1.1:55534446-55534465 MS.gene004736:intron 30.0%
! TTTGGTGGAAATATGGTTTT+TGG - chr1.1:55533852-55533871 MS.gene004736:CDS 30.0%
!! AACGGACTACAATACAAAAA+TGG + chr1.1:55534235-55534254 None:intergenic 30.0%
!! ATATTGTTGTTTGTGCTAGT+TGG + chr1.1:55533384-55533403 None:intergenic 30.0%
AATTGCAAGAAGGAGAAGAA+GGG + chr1.1:55533752-55533771 None:intergenic 35.0%
AGGTGAGACTGTGATTATAA+AGG + chr1.1:55534558-55534577 None:intergenic 35.0%
ATGCAATCCTCTTCAAAAAC+AGG + chr1.1:55533699-55533718 None:intergenic 35.0%
CAGTTGAAAATCGACCAATT+TGG - chr1.1:55534195-55534214 MS.gene004736:intron 35.0%
CGGTGATATAACCAGTTTAA+CGG + chr1.1:55534253-55534272 None:intergenic 35.0%
GATACTAATAGAACTGCTAG+TGG - chr1.1:55535185-55535204 MS.gene004736:CDS 35.0%
GCAACTATTCCATTCAATCA+TGG - chr1.1:55535538-55535557 MS.gene004736:CDS 35.0%
GGTGAGACTGTGATTATAAA+GGG + chr1.1:55534557-55534576 None:intergenic 35.0%
GTTCTGTTTGATTATGCAAG+TGG + chr1.1:55534971-55534990 None:intergenic 35.0%
TAATTGCAAGAAGGAGAAGA+AGG + chr1.1:55533753-55533772 None:intergenic 35.0%
TAGAAACAGTCAATACCTGA+AGG + chr1.1:55533971-55533990 None:intergenic 35.0%
TAGCAATAGCAATAACACAG+TGG - chr1.1:55533350-55533369 MS.gene004736:intron 35.0%
TCTCCTTCTTGCAATTATCT+TGG - chr1.1:55533756-55533775 MS.gene004736:intron 35.0%
TGAAGAAGAAGATGAAGAAG+AGG - chr1.1:55535214-55535233 MS.gene004736:CDS 35.0%
TGGAGATCTTGTGAAACTTT+AGG + chr1.1:55534381-55534400 None:intergenic 35.0%
TGTATTGTAGTCCGTTAAAC+TGG - chr1.1:55534239-55534258 MS.gene004736:intron 35.0%
TGTGAAAGAGGAAGATGATA+TGG - chr1.1:55535464-55535483 MS.gene004736:CDS 35.0%
TTTCAACTGATTGAATCGAC+TGG + chr1.1:55534184-55534203 None:intergenic 35.0%
! AAAATGGAAACCGGTTTCAA+CGG + chr1.1:55534273-55534292 None:intergenic 35.0%
! AAGTTTTCCAACCTTGAAAG+TGG + chr1.1:55534847-55534866 None:intergenic 35.0%
! TCAGATTCAGATTCTGGAAA+GGG + chr1.1:55534712-55534731 None:intergenic 35.0%
! TCTTCCAAGTTTGAGATTTC+TGG + chr1.1:55534822-55534841 None:intergenic 35.0%
! TTCAGATTCAGATTCTGGAA+AGG + chr1.1:55534713-55534732 None:intergenic 35.0%
! TTTTTGCAAAAAGGTCATGG+TGG - chr1.1:55534449-55534468 MS.gene004736:intron 35.0%
!! ACTGATAGTTCTGGTTTGTT+TGG - chr1.1:55533834-55533853 MS.gene004736:CDS 35.0%
!! ATTGCTAGCTACTGTTTTGA+TGG + chr1.1:55534523-55534542 None:intergenic 35.0%
!! TGGTTTGTTTGGTGGAAATA+TGG - chr1.1:55533845-55533864 MS.gene004736:CDS 35.0%
!!! ATTACCACCTGTTTTTGAAG+AGG - chr1.1:55533689-55533708 MS.gene004736:intron 35.0%
!!! GCTACTGTTTTGATGGATAT+TGG + chr1.1:55534516-55534535 None:intergenic 35.0%
AAATCGACCAATTTGGCAGT+TGG - chr1.1:55534202-55534221 MS.gene004736:intron 40.0%
ACTACAGGTAGTTGTGAAAG+AGG - chr1.1:55535452-55535471 MS.gene004736:CDS 40.0%
AGAAGCTTTGCAGAATTCTG+AGG - chr1.1:55533245-55533264 MS.gene004736:intron 40.0%
ATACTGCGAAAACCCATCAA+CGG + chr1.1:55533622-55533641 None:intergenic 40.0%
ATTGTCCTGATCCTATTCAG+AGG - chr1.1:55533928-55533947 MS.gene004736:CDS 40.0%
CAATCCTCTTCAAAAACAGG+TGG + chr1.1:55533696-55533715 None:intergenic 40.0%
CAGAATTCTGCAAAGCTTCT+GGG + chr1.1:55533245-55533264 None:intergenic 40.0%
GACAAAACCAACTGCCAAAT+TGG + chr1.1:55534212-55534231 None:intergenic 40.0%
GACACCAGAAATCTCAAACT+TGG - chr1.1:55534815-55534834 MS.gene004736:CDS 40.0%
GAGAATCAACAACTAGTAGC+TGG - chr1.1:55534771-55534790 MS.gene004736:CDS 40.0%
GATTCAGTTGCACCTCTTAT+GGG - chr1.1:55533654-55533673 MS.gene004736:intron 40.0%
GCAGTAGTAAGAGAACCATT+AGG + chr1.1:55533807-55533826 None:intergenic 40.0%
GCTTTGTCTACTGATAGTTC+TGG - chr1.1:55533825-55533844 MS.gene004736:CDS 40.0%
GGACCAAGATAATTGCAAGA+AGG + chr1.1:55533762-55533781 None:intergenic 40.0%
GGGTTCAAAGGAACATAAGA+AGG + chr1.1:55533732-55533751 None:intergenic 40.0%
GGTTATATCACCGTTGAAAC+CGG - chr1.1:55534260-55534279 MS.gene004736:intron 40.0%
TATATTGGCCAGTAGCAGAA+AGG - chr1.1:55534600-55534619 MS.gene004736:intron 40.0%
TCAGAATTCTGCAAAGCTTC+TGG + chr1.1:55533246-55533265 None:intergenic 40.0%
TGATTCAGTTGCACCTCTTA+TGG - chr1.1:55533653-55533672 MS.gene004736:intron 40.0%
TTGTCCTGATCCTATTCAGA+GGG - chr1.1:55533929-55533948 MS.gene004736:CDS 40.0%
TTGTGATTCCTTTCTGCTAC+TGG + chr1.1:55534611-55534630 None:intergenic 40.0%
! AGAGGTGCAACTGAATCATT+TGG + chr1.1:55533651-55533670 None:intergenic 40.0%
! GCTGTAAGTTGAACATGATG+AGG + chr1.1:55533591-55533610 None:intergenic 40.0%
!! GATAGTTCTGGTTTGTTTGG+TGG - chr1.1:55533837-55533856 MS.gene004736:CDS 40.0%
!! GCTACTAGTTGTTGATTCTC+AGG + chr1.1:55534771-55534790 None:intergenic 40.0%
AACACCCTCTGAATAGGATC+AGG + chr1.1:55533936-55533955 None:intergenic 45.0%
AACTTGGCTAATGCGCTGTT+TGG - chr1.1:55535307-55535326 MS.gene004736:CDS 45.0%
ACAGCATGTTCATCCGTTGA+TGG - chr1.1:55533606-55533625 MS.gene004736:intron 45.0%
ACAGTCAATACCTGAAGGTC+AGG + chr1.1:55533966-55533985 None:intergenic 45.0%
CAGCATGTTCATCCGTTGAT+GGG - chr1.1:55533607-55533626 MS.gene004736:intron 45.0%
CGAAAATTCGAGCGCTAAGA+GGG + chr1.1:55533200-55533219 None:intergenic 45.0%
CGGCATGCATACTGCATATT+TGG + chr1.1:55535101-55535120 None:intergenic 45.0%
CTTGGAAGACTCCACTTTCA+AGG - chr1.1:55534833-55534852 MS.gene004736:CDS 45.0%
GAAGACTCCACTTTCAAGGT+TGG - chr1.1:55534837-55534856 MS.gene004736:CDS 45.0%
GAAGGAGAAGAAGGGTTCAA+AGG + chr1.1:55533744-55533763 None:intergenic 45.0%
GATAAAGGAGCTCCCATAAG+AGG + chr1.1:55533669-55533688 None:intergenic 45.0%
GATGTGACTGGAAGGAATGA+AGG + chr1.1:55533528-55533547 None:intergenic 45.0%
GCAAATCTTCCTCTAACTCG+AGG + chr1.1:55535146-55535165 None:intergenic 45.0%
GGGTTAAACACCCTCTGAAT+AGG + chr1.1:55533942-55533961 None:intergenic 45.0%
TCAATACCTGAAGGTCAGGA+GGG + chr1.1:55533962-55533981 None:intergenic 45.0%
TCGAAAATTCGAGCGCTAAG+AGG + chr1.1:55533201-55533220 None:intergenic 45.0%
TGCAATTATCTTGGTCCTGC+CGG - chr1.1:55533765-55533784 MS.gene004736:intron 45.0%
! TGCTATCAGCCAGAGTTTTG+CGG + chr1.1:55535121-55535140 None:intergenic 45.0%
!! ACTTGCTGTGATGATGTGAC+TGG + chr1.1:55533540-55533559 None:intergenic 45.0%
!! TGAGATTTCTGGTGTCAGAG+TGG + chr1.1:55534811-55534830 None:intergenic 45.0%
ATGGCGGCATACATGCCTAA+TGG - chr1.1:55533789-55533808 MS.gene004736:CDS 50.0%
CAACAACTAGTAGCTGGTGC+TGG - chr1.1:55534777-55534796 MS.gene004736:CDS 50.0%
GATAGCAGACCTCGAGTTAG+AGG - chr1.1:55535134-55535153 MS.gene004736:CDS 50.0%
GTATGCATGCCGCAAAACTC+TGG - chr1.1:55535109-55535128 MS.gene004736:CDS 50.0%
GTCAATACCTGAAGGTCAGG+AGG + chr1.1:55533963-55533982 None:intergenic 50.0%
GTTTAACCCTCCTGACCTTC+AGG - chr1.1:55533953-55533972 MS.gene004736:intron 50.0%
TTATCTTGGTCCTGCCGGTA+TGG - chr1.1:55533770-55533789 MS.gene004736:CDS 50.0%
! GCTGTGATGATGTGACTGGA+AGG + chr1.1:55533536-55533555 None:intergenic 50.0%
AGGCATGTATGCCGCCATAC+CGG + chr1.1:55533787-55533806 None:intergenic 55.0%
ATGTATGCCGCCATACCGGC+AGG + chr1.1:55533783-55533802 None:intergenic 60.0%
TCTTGGTCCTGCCGGTATGG+CGG - chr1.1:55533773-55533792 MS.gene004736:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 55533147 55535566 55533147 ID=MS.gene004736
chr1.1 mRNA 55533147 55535566 55533147 ID=MS.gene004736.t1;Parent=MS.gene004736
chr1.1 exon 55534739 55535566 55534739 ID=MS.gene004736.t1.exon1;Parent=MS.gene004736.t1
chr1.1 CDS 55534739 55535566 55534739 ID=cds.MS.gene004736.t1;Parent=MS.gene004736.t1
chr1.1 exon 55533769 55533954 55533769 ID=MS.gene004736.t1.exon2;Parent=MS.gene004736.t1
chr1.1 CDS 55533769 55533954 55533769 ID=cds.MS.gene004736.t1;Parent=MS.gene004736.t1
chr1.1 exon 55533478 55533603 55533478 ID=MS.gene004736.t1.exon3;Parent=MS.gene004736.t1
chr1.1 CDS 55533478 55533603 55533478 ID=cds.MS.gene004736.t1;Parent=MS.gene004736.t1
chr1.1 exon 55533147 55533254 55533147 ID=MS.gene004736.t1.exon4;Parent=MS.gene004736.t1
chr1.1 CDS 55533147 55533254 55533147 ID=cds.MS.gene004736.t1;Parent=MS.gene004736.t1
Gene Sequence

>MS.gene004736

ATGTTGTTTACATTTCCTTTATATCAATGTTTACAGGATGAAATTTCAAGCCCTCTTAGCGCTCGAATTTTCGAACTTTGTAACACTGAATTATTCCCAGAAGCTTTGCAGAATTCTGAGGTTACATCAAGCTCAAATTGTTGCTATGAAGAGAATTCCTCATATGCAACAAATATATTAGATGTAGAAAACAAGTTCAACAATAGCAATAGCAATAACACAGTGGTCACAACTCCAACTAGCACAAACAACAATATCAACAACAATAATAACTCCAACAATAGCAATAATCTATCAGTTATCTTTGATTCACAAGAAGAAATTGACAATGACATTTCTGCCTCAATAGATTTCTCACTATCACCATCTTTCAATGTTCCTTCATTCCTTCCAGTCACATCATCACAGCAAGTAGAACAATTTGATTTCTCTTCTGTGCAGCCTCATCATGTTCAACTTACAGCATGTTCATCCGTTGATGGGTTTTCGCAGTATCATAATCCAAATGATTCAGTTGCACCTCTTATGGGAGCTCCTTTATCATTACCACCTGTTTTTGAAGAGGATTGCATTACTTCTGTACCTTCTTATGTTCCTTTGAACCCTTCTTCTCCTTCTTGCAATTATCTTGGTCCTGCCGGTATGGCGGCATACATGCCTAATGGTTCTCTTACTACTGCTTTGTCTACTGATAGTTCTGGTTTGTTTGGTGGAAATATGGTTTTTGGTTCTGAAATTCAGACACAAGAACTTGATTATCAAGGAGATAATGGTAGAATTTATTGTCCTGATCCTATTCAGAGGGTGTTTAACCCTCCTGACCTTCAGGTATTGACTGTTTCTAAACTACTTAATTAGTTAATTTCTTCATCATTACTTTCTGTTGATAATACAAATCATGTTAAAAATGTCCATTTTCCAAAGTTATTTTTAATGAATGATGCATGTAAGTTTTCTCTTTCAAGTCTAAAGTTTCCAACTATAAGGTTGTTAATCTTAACTATATCAAGCAATGTTTTTAAAACTGGACTGAACCAGTCGATTCAATCAGTTGAAAATCGACCAATTTGGCAGTTGGTTTTGTCCCATTTTTGTATTGTAGTCCGTTAAACTGGTTATATCACCGTTGAAACCGGTTTCCATTTTTGTATTTTTCCTTTTTACTTGTTCATTTGGTTATTTGTCATCCAATTCAATTATGGTTGAACTGTTTGTACCAATTGAACAATGACCTAAAGTTTCACAAGATCTCCAATCCGATTTTTGAAACATTTATTTTAAAGCTTTGTAAGAGGTAATTTCTTTTTGCAAAAAGGTCATGGTGGTCCACAGATATGTAAAAAGCTTACGCCTCATAGAATATATGCCAATATCCATCAAAACAGTAGCTAGCAATAGCATATCATACCCTTTATAATCACAGTCTCACCTACAAAAAAAAAAAGTAGCATAGTATATTGGCCAGTAGCAGAAAGGAATCACAATTTTTTTCCAATAAAATTGATGATAAAACAGTATTATTATCAGTGTCCTATTTCATATGAATGGTTCTTTTTGTATTTCCCTTTCCAGAATCTGAATCTGAAGATAATAATGCTAATTTATTTTTCAGGCACTTAATCCTGAGAATCAACAACTAGTAGCTGGTGCTGGTAGTTCTGCCACTCTGACACCAGAAATCTCAAACTTGGAAGACTCCACTTTCAAGGTTGGAAAACTTTCTGTTGAACAAAGAAAAGAAAAGATTCACAGATACATGAAGAAAAGAAATGAAAGAAACTTCAGCAAGAAAATTAAGGTACTATACTACTTCAAAAACAACCACTTGCATAATCAAACAGAACTGAAAGCCTTATCATGTTACATATAAATTTGCAAGCTATAATTACTTGCATATCAAGAAACTTCTCTTCTTACTGCATATTTTGAAGTTCATCTAATGATGATGCAACCAAATATGCAGTATGCATGCCGCAAAACTCTGGCTGATAGCAGACCTCGAGTTAGAGGAAGATTTGCAAAGAATGATGATTTTGGAGATACTAATAGAACTGCTAGTGGCAATCATGAAGAAGAAGATGAAGAAGAGGTATAAGATTAATCTCAAACAACATTCAATATTTAAAAACACATACCAACACACTTTATAAGTTCATATTTAACTTGGCTAATGCGCTGTTTGGATAAGCAATGTATGATAAAAGATACTTTTATGTTATAAGCGCTCGAGATTGAACTATTTGAACTTATCTACTTATTTATTTGATTGGAATAATTTTTGATCTTGCTTCATTTGATAACTGTAACTACAGGTAGTTGTGAAAGAGGAAGATGATATGGTTGATTCCTCAGATATATTTGCTCATATCAGTGGAGTGAACTCCTTCAAATGCAACTATTCCATTCAATCATGGATTTGA
Protein sequence

>MS.gene004736.t1

MLFTFPLYQCLQDEISSPLSARIFELCNTELFPEALQNSEVTSSSNCCYEENSSYATNILDVENKFNNSNSNNTVVTTPTSTNNNINNNNNSNNSNNLSVIFDSQEEIDNDISASIDFSLSPSFNVPSFLPVTSSQQVEQFDFSSVQPHHVQLTACSSVDGFSQYHNPNDSVAPLMGAPLSLPPVFEEDCITSVPSYVPLNPSSPSCNYLGPAGMAAYMPNGSLTTALSTDSSGLFGGNMVFGSEIQTQELDYQGDNGRIYCPDPIQRVFNPPDLQALNPENQQLVAGAGSSATLTPEISNLEDSTFKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGDTNRTASGNHEEEDEEEVVVKEEDDMVDSSDIFAHISGVNSFKCNYSIQSWI