AlfalfaGEDB | MS.gene004846

M. sativa cultivar XinJiangDaYe / MS.gene004846

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0043167 GO:0043169 GO:0046872
PFAM: PF12796.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004846.t1	XP_003590850.2	82.5	653	49	3	1	588	1	653	5.90E-299	1036.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004846.t1	Q9LUZ4	50.2	601	239	21	21	579	2	584	5.7e-141	502.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004846.t1	G7I4W5	82.5	653	49	3	1	588	1	653	4.3e-299	1036.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene004846.t1	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004846.t1	MTR_1g075890	81.776	653	54	3	1	588	1	653	0.0	1021
MS.gene004846.t1	MTR_3g464260	70.886	553	78	8	37	588	29	499	0.0	738
MS.gene004846.t1	MTR_3g464280	68.021	566	103	7	1	560	1	494	0.0	697
MS.gene004846.t1	MTR_5g071070	53.630	675	217	15	1	587	1	667	0.0	633
MS.gene004846.t1	MTR_5g071070	53.288	593	183	14	81	587	1	585	0.0	542
MS.gene004846.t1	MTR_5g082830	46.885	642	231	15	28	582	25	643	1.08e-179	524
MS.gene004846.t1	MTR_7g092070	40.582	653	266	16	33	582	47	680	3.71e-142	429
MS.gene004846.t1	MTR_3g070880	44.792	576	193	18	31	579	8	485	2.17e-139	415
MS.gene004846.t1	MTR_3g464290	56.813	433	139	9	177	587	54	460	1.37e-134	401
MS.gene004846.t1	MTR_3g029590	37.874	668	280	19	30	584	42	687	2.74e-127	391

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004846.t1	AT5G58620	49.503	604	239	20	21	579	2	584	0.0	525
MS.gene004846.t1	AT3G55980	46.399	597	252	14	1	579	1	547	1.47e-165	484
MS.gene004846.t1	AT3G55980	46.399	597	252	14	1	579	68	614	1.23e-164	484
MS.gene004846.t1	AT2G40140	46.000	600	258	17	1	579	1	555	1.44e-159	469
MS.gene004846.t1	AT2G40140	46.000	600	258	17	1	579	1	555	1.44e-159	469
MS.gene004846.t1	AT5G12850	41.693	626	261	21	16	547	20	635	4.69e-135	410
MS.gene004846.t1	AT2G41900	46.921	471	183	8	25	447	40	491	8.90e-134	407
MS.gene004846.t1	AT4G29190	42.128	235	101	6	212	435	68	278	7.49e-55	190
MS.gene004846.t1	AT2G19810	62.295	122	44	1	208	327	61	182	3.14e-52	183
MS.gene004846.t1	AT2G25900	58.140	129	54	0	219	347	86	214	5.06e-52	181

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Find 141 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAAGTCATGTGCAA+CGG	0.630659	1.4:+62120584	None:intergenic
AAATTAGACTGGTCCATCCC+CGG	0.564430	1.4:+62122183	MS.gene004846:CDS
AACAAAGCAGCAACCATAAG+AGG	0.442942	1.4:-62120830	None:intergenic
AACCTTCTGCCTTCTCTGGT+TGG	0.384069	1.4:+62122145	MS.gene004846:CDS
AACGCAAACCAGCAACTTTG+GGG	0.627454	1.4:+62121973	MS.gene004846:CDS
AAGAAATGGGATATGAAGAG+AGG	0.624986	1.4:+62120804	MS.gene004846:CDS
AAGCAAAAGTTTGACAACCT+CGG	0.631058	1.4:-62120975	None:intergenic
AAGGAGATGCAAGACCTGTA+AGG	0.541933	1.4:-62121861	None:intergenic
AAGGATTGCCCCAAAGTTGC+TGG	0.360358	1.4:-62121981	None:intergenic
AAGGTTGGATCAAAAGAAAT+GGG	0.451915	1.4:+62120791	MS.gene004846:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGTTGGATCAAAAGAAAT+GGG	+	chr1.4:62120791-62120810	MS.gene004846:CDS	30.0%
AATAGAAAACCTTGTCAAAC+TGG	+	chr1.4:62120611-62120630	MS.gene004846:CDS	30.0%
AATGATATTTCATCGGATCA+CGG	-	chr1.4:62121366-62121385	None:intergenic	30.0%
GACGATTTCCTTAAGAAAAT+AGG	+	chr1.4:62121127-62121146	MS.gene004846:CDS	30.0%
GCAATGAACTCAATAAAATG+AGG	+	chr1.4:62122205-62122224	MS.gene004846:CDS	30.0%
GGTGAATTTGAATATGATGT+GGG	-	chr1.4:62121610-62121629	None:intergenic	30.0%
TGATGCAATCACATTTGAAT+TGG	-	chr1.4:62122016-62122035	None:intergenic	30.0%
TGGTGAATTTGAATATGATG+TGG	-	chr1.4:62121611-62121630	None:intergenic	30.0%
TGTTGATCAAATTCCATTGT+TGG	-	chr1.4:62122339-62122358	None:intergenic	30.0%
TTCAGCCAAAGATGATATAA+TGG	+	chr1.4:62120703-62120722	MS.gene004846:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	62120596	62122362	62120596	ID=MS.gene004846
chr1.4	mRNA	62120596	62122362	62120596	ID=MS.gene004846.t1;Parent=MS.gene004846
chr1.4	exon	62120596	62122362	62120596	ID=MS.gene004846.t1.exon1;Parent=MS.gene004846.t1
chr1.4	CDS	62120596	62122362	62120596	ID=cds.MS.gene004846.t1;Parent=MS.gene004846.t1

Gene Sequence

>MS.gene004846

ATGTGCAACGGTTCGAATAGAAAACCTTGTCAAACTGGTTTGATTAGGGAAAATGAAAGTGGAACACAAGAAGAACTTCATCATAAGATTTCACCTTTGCTTGAGTTTTCAGCCAAAGATGATATAATGGCGTTCACAAATGCTGTTGAAAAAGATGATCATGATGTTGATGAAGTAGGGTTATGGTATGGAAGGAAGGTTGGATCAAAAGAAATGGGATATGAAGAGAGGACACCTCTTATGGTTGCTGCTTTGTTTGGAAGCAAGGGTGTGTTGTCTTATATTCTTGGAACCGGCCGCGTTGATGTTAACCGAGCGTGCGGCTCAGATAGGGCTACCGCTCTTCATTGTGCTGTTTCTGGTTGTTCTGCTGCTTCTGCCGAGGTTGTCAAACTTTTGCTTGATGCATCTGCAGATGTTAGTTCCGCCGATGCAAACGGTAACCGGTGCAGTGACTTGATTGTCTCGGTTTCTAAGAGTATCTTCGGTTCAAGGAAGAGGATACTACAAGGCAATGTTGATGACGAGGACGACGATTTCCTTAAGAAAATAGGTTTCCAAATGGTGGAGCAACAACAAGATGTAGGTACATCTCGAACTGAGAAGAAAGATCATCTCATTGATCCATCCCTACCTGACATAAAGAATGGAATATATAGTACAGATGAATTTAGGATGTTTACATTCAAAGTGAAGCCTTGTTCAAGGGCTTATACTCATGATTGGACTGAGTGCCCCTTTGTTCATCCTGGGGAAAATGCAAGGCGCCGTGATCCGATGAAATATCATTACACATGTGTCCCTTGCCCTGAGTTTCGGAAGGGATCATGCAACAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAATGTTGGCTTCATCCTGCTCAATACAGAACAAGGCTTTGCAAGGATGAAACCAGATGCATGAGAAGGGTTTGCTTTTTCGCTCACAAACCAGAGGAGCTTCGACCGTTGTATGCTTCTACCGGTTCTGCTCTACCTTCACCCACATCATATTCAAATTCACCAAGTGCTTCTTCAATGGATTCTTTCACATTGAGCTCTCCGTCTTCTTTGATACAATCTGCGTCGACGCCACCTTTGACTCCATCTGCAGCATCATCGCCTACGGCTGGAACCATGTGGCAGACTCAGATTCAGCTTCATGCTGCAGTCCCTACCCTTCAGATGCCGAGAAGCAGATTTAAAACTGCAATGAATGCTAGAAATAATGCTGAATTTCTCGAACTTGAAAATCGCCTTACAGGTCTTGCATCTCCTTCAAATAGGCTTGCAGGAGTGAATCCTACTAACCTTGAAAACATTTTCGGGTCATCAATACAATCTCCGACATCAATACAAGTGCATCAGAACGCAAACCAGCAACTTTGGGGCAATCCTTTTGATCTTACCAATTCAAATGTGATTGCATCATCACAATTTAGAGTTGATGCCTTTTCGAAGCGGAGCCAAAGCTTTATTGAGCGCAACAGCGTTGCGAGCTTTAATTCTGAGCTTCCTTCTGCTAGCTCAGTTGCCATGGAACCTTCTGCCTTCTCTGGTTGGGGCTCTCCTGATGGAAAATTAGACTGGTCCATCCCCGGCAATGAACTCAATAAAATGAGGAAATCTTACAGAAGTAGCACTTCAACAATGGCTGCTGCATTAAGTGTTAATGATCCAGATATATTTTTAAGCCATGAATCTTGGGTTGATTCACTTGTGAATGATGGTCCAACAATGGAATTTGATCAACATTGA

Protein sequence

>MS.gene004846.t1

MCNGSNRKPCQTGLIRENESGTQEELHHKISPLLEFSAKDDIMAFTNAVEKDDHDVDEVGLWYGRKVGSKEMGYEERTPLMVAALFGSKGVLSYILGTGRVDVNRACGSDRATALHCAVSGCSAASAEVVKLLLDASADVSSADANGNRCSDLIVSVSKSIFGSRKRILQGNVDDEDDDFLKKIGFQMVEQQQDVGTSRTEKKDHLIDPSLPDIKNGIYSTDEFRMFTFKVKPCSRAYTHDWTECPFVHPGENARRRDPMKYHYTCVPCPEFRKGSCNKGDACEYAHGIFECWLHPAQYRTRLCKDETRCMRRVCFFAHKPEELRPLYASTGSALPSPTSYSNSPSASSMDSFTLSSPSSLIQSASTPPLTPSAASSPTAGTMWQTQIQLHAAVPTLQMPRSRFKTAMNARNNAEFLELENRLTGLASPSNRLAGVNPTNLENIFGSSIQSPTSIQVHQNANQQLWGNPFDLTNSNVIASSQFRVDAFSKRSQSFIERNSVASFNSELPSASSVAMEPSAFSGWGSPDGKLDWSIPGNELNKMRKSYRSSTSTMAAALSVNDPDIFLSHESWVDSLVNDGPTMEFDQH