Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004846.t1 | XP_003590850.2 | 82.5 | 653 | 49 | 3 | 1 | 588 | 1 | 653 | 5.90E-299 | 1036.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004846.t1 | Q9LUZ4 | 50.2 | 601 | 239 | 21 | 21 | 579 | 2 | 584 | 5.7e-141 | 502.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004846.t1 | G7I4W5 | 82.5 | 653 | 49 | 3 | 1 | 588 | 1 | 653 | 4.3e-299 | 1036.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene004846.t1 | TF | C3H |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004846.t1 | MTR_1g075890 | 81.776 | 653 | 54 | 3 | 1 | 588 | 1 | 653 | 0.0 | 1021 |
MS.gene004846.t1 | MTR_3g464260 | 70.886 | 553 | 78 | 8 | 37 | 588 | 29 | 499 | 0.0 | 738 |
MS.gene004846.t1 | MTR_3g464280 | 68.021 | 566 | 103 | 7 | 1 | 560 | 1 | 494 | 0.0 | 697 |
MS.gene004846.t1 | MTR_5g071070 | 53.630 | 675 | 217 | 15 | 1 | 587 | 1 | 667 | 0.0 | 633 |
MS.gene004846.t1 | MTR_5g071070 | 53.288 | 593 | 183 | 14 | 81 | 587 | 1 | 585 | 0.0 | 542 |
MS.gene004846.t1 | MTR_5g082830 | 46.885 | 642 | 231 | 15 | 28 | 582 | 25 | 643 | 1.08e-179 | 524 |
MS.gene004846.t1 | MTR_7g092070 | 40.582 | 653 | 266 | 16 | 33 | 582 | 47 | 680 | 3.71e-142 | 429 |
MS.gene004846.t1 | MTR_3g070880 | 44.792 | 576 | 193 | 18 | 31 | 579 | 8 | 485 | 2.17e-139 | 415 |
MS.gene004846.t1 | MTR_3g464290 | 56.813 | 433 | 139 | 9 | 177 | 587 | 54 | 460 | 1.37e-134 | 401 |
MS.gene004846.t1 | MTR_3g029590 | 37.874 | 668 | 280 | 19 | 30 | 584 | 42 | 687 | 2.74e-127 | 391 |
MS.gene004846.t1 | MTR_3g464270 | 54.717 | 371 | 133 | 7 | 222 | 578 | 8 | 357 | 1.70e-121 | 363 |
MS.gene004846.t1 | MTR_1g050438 | 40.558 | 466 | 221 | 11 | 33 | 451 | 15 | 471 | 7.19e-102 | 320 |
MS.gene004846.t1 | MTR_0728s0020 | 40.558 | 466 | 221 | 11 | 33 | 451 | 31 | 487 | 1.89e-101 | 320 |
MS.gene004846.t1 | MTR_3g435590 | 47.091 | 361 | 174 | 5 | 30 | 374 | 29 | 388 | 3.08e-101 | 315 |
MS.gene004846.t1 | MTR_3g435680 | 41.096 | 292 | 136 | 4 | 118 | 378 | 26 | 312 | 1.34e-64 | 217 |
MS.gene004846.t1 | MTR_8g102100 | 53.659 | 164 | 70 | 1 | 219 | 376 | 77 | 240 | 1.42e-55 | 192 |
MS.gene004846.t1 | MTR_6g090380 | 69.159 | 107 | 33 | 0 | 219 | 325 | 99 | 205 | 2.80e-53 | 186 |
MS.gene004846.t1 | MTR_3g103960 | 60.448 | 134 | 51 | 2 | 213 | 344 | 43 | 176 | 9.95e-52 | 179 |
MS.gene004846.t1 | MTR_2g090605 | 61.261 | 111 | 43 | 0 | 223 | 333 | 77 | 187 | 2.01e-48 | 174 |
MS.gene004846.t1 | MTR_4g078660 | 57.944 | 107 | 45 | 0 | 219 | 325 | 56 | 162 | 5.26e-47 | 167 |
MS.gene004846.t1 | MTR_1g081420 | 75.806 | 62 | 8 | 1 | 478 | 532 | 167 | 228 | 5.01e-20 | 89.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004846.t1 | AT5G58620 | 49.503 | 604 | 239 | 20 | 21 | 579 | 2 | 584 | 0.0 | 525 |
MS.gene004846.t1 | AT3G55980 | 46.399 | 597 | 252 | 14 | 1 | 579 | 1 | 547 | 1.47e-165 | 484 |
MS.gene004846.t1 | AT3G55980 | 46.399 | 597 | 252 | 14 | 1 | 579 | 68 | 614 | 1.23e-164 | 484 |
MS.gene004846.t1 | AT2G40140 | 46.000 | 600 | 258 | 17 | 1 | 579 | 1 | 555 | 1.44e-159 | 469 |
MS.gene004846.t1 | AT2G40140 | 46.000 | 600 | 258 | 17 | 1 | 579 | 1 | 555 | 1.44e-159 | 469 |
MS.gene004846.t1 | AT5G12850 | 41.693 | 626 | 261 | 21 | 16 | 547 | 20 | 635 | 4.69e-135 | 410 |
MS.gene004846.t1 | AT2G41900 | 46.921 | 471 | 183 | 8 | 25 | 447 | 40 | 491 | 8.90e-134 | 407 |
MS.gene004846.t1 | AT4G29190 | 42.128 | 235 | 101 | 6 | 212 | 435 | 68 | 278 | 7.49e-55 | 190 |
MS.gene004846.t1 | AT2G19810 | 62.295 | 122 | 44 | 1 | 208 | 327 | 61 | 182 | 3.14e-52 | 183 |
MS.gene004846.t1 | AT2G25900 | 58.140 | 129 | 54 | 0 | 219 | 347 | 86 | 214 | 5.06e-52 | 181 |
MS.gene004846.t1 | AT2G25900 | 58.140 | 129 | 54 | 0 | 219 | 347 | 86 | 214 | 5.06e-52 | 181 |
MS.gene004846.t1 | AT5G07500 | 60.504 | 119 | 47 | 0 | 207 | 325 | 36 | 154 | 7.54e-52 | 178 |
MS.gene004846.t1 | AT1G03790 | 50.968 | 155 | 68 | 3 | 190 | 340 | 53 | 203 | 1.89e-48 | 174 |
MS.gene004846.t1 | AT5G44260 | 56.250 | 128 | 51 | 2 | 201 | 327 | 42 | 165 | 5.92e-46 | 166 |
Find 141 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTCTTCATTGTGCTGTTTC+TGG | 0.137009 | 1.4:+62120935 | MS.gene004846:CDS |
ACCTTCTGCCTTCTCTGGTT+GGG | 0.217111 | 1.4:+62122146 | MS.gene004846:CDS |
CTTGTCAAACTGGTTTGATT+AGG | 0.230886 | 1.4:+62120621 | MS.gene004846:CDS |
GGTGTGTTGTCTTATATTCT+TGG | 0.275343 | 1.4:+62120863 | MS.gene004846:CDS |
GAACGCCATTATATCATCTT+TGG | 0.288121 | 1.4:-62120708 | None:intergenic |
TTGTCAAACTGGTTTGATTA+GGG | 0.297404 | 1.4:+62120622 | MS.gene004846:CDS |
GAACTTGAAAATCGCCTTAC+AGG | 0.298409 | 1.4:+62121847 | MS.gene004846:CDS |
TATATAGTACAGATGAATTT+AGG | 0.309340 | 1.4:+62121248 | MS.gene004846:CDS |
GACGATTTCCTTAAGAAAAT+AGG | 0.314739 | 1.4:+62121127 | MS.gene004846:CDS |
CTTGTTGTTGCTCCACCATT+TGG | 0.317761 | 1.4:-62121153 | None:intergenic |
CTTATGGTTGCTGCTTTGTT+TGG | 0.322501 | 1.4:+62120833 | MS.gene004846:CDS |
GAGTGCCCCTTTGTTCATCC+TGG | 0.343455 | 1.4:+62121325 | MS.gene004846:CDS |
GAACGCAAACCAGCAACTTT+GGG | 0.343665 | 1.4:+62121972 | MS.gene004846:CDS |
GTGTCCCTTGCCCTGAGTTT+CGG | 0.346896 | 1.4:+62121392 | MS.gene004846:CDS |
AATAGAAAACCTTGTCAAAC+TGG | 0.348122 | 1.4:+62120611 | MS.gene004846:CDS |
ATGGAACCTTCTGCCTTCTC+TGG | 0.354986 | 1.4:+62122141 | MS.gene004846:CDS |
TGTTGATCAAATTCCATTGT+TGG | 0.356576 | 1.4:-62122336 | None:intergenic |
TCTCCTTCAAATAGGCTTGC+AGG | 0.358629 | 1.4:+62121877 | MS.gene004846:CDS |
AAGGATTGCCCCAAAGTTGC+TGG | 0.360358 | 1.4:-62121981 | None:intergenic |
TTCAGCCAAAGATGATATAA+TGG | 0.367048 | 1.4:+62120703 | MS.gene004846:CDS |
AACCTTCTGCCTTCTCTGGT+TGG | 0.384069 | 1.4:+62122145 | MS.gene004846:CDS |
AGAACGCAAACCAGCAACTT+TGG | 0.384644 | 1.4:+62121971 | MS.gene004846:CDS |
TTCACCAAGTGCTTCTTCAA+TGG | 0.385276 | 1.4:+62121624 | MS.gene004846:CDS |
CCGCCGATGCAAACGGTAAC+CGG | 0.390815 | 1.4:+62121020 | MS.gene004846:CDS |
GAAGGTTGGATCAAAAGAAA+TGG | 0.391384 | 1.4:+62120790 | MS.gene004846:CDS |
TGAAGAGAGGACACCTCTTA+TGG | 0.399251 | 1.4:+62120817 | MS.gene004846:CDS |
TTGTCTTATATTCTTGGAAC+CGG | 0.399584 | 1.4:+62120869 | MS.gene004846:CDS |
GTCTTGCATCTCCTTCAAAT+AGG | 0.399881 | 1.4:+62121869 | MS.gene004846:CDS |
GTGAATCAACCCAAGATTCA+TGG | 0.407246 | 1.4:-62122299 | None:intergenic |
TTTGAATTGGTAAGATCAAA+AGG | 0.409476 | 1.4:-62122000 | None:intergenic |
GCAAACCCTTCTCATGCATC+TGG | 0.411034 | 1.4:-62121518 | None:intergenic |
TGTTGCGCTCAATAAAGCTT+TGG | 0.411592 | 1.4:-62122071 | None:intergenic |
CTAAGAGTATCTTCGGTTCA+AGG | 0.415813 | 1.4:+62121068 | MS.gene004846:CDS |
CCTTCTGCCTTCTCTGGTTG+GGG | 0.417819 | 1.4:+62122147 | MS.gene004846:CDS |
TCAAAGTGAAGCCTTGTTCA+AGG | 0.431149 | 1.4:+62121281 | MS.gene004846:CDS |
TGCTGCTTTGTTTGGAAGCA+AGG | 0.432478 | 1.4:+62120841 | MS.gene004846:CDS |
CAAGGGCTTATACTCATGAT+TGG | 0.432695 | 1.4:+62121299 | MS.gene004846:CDS |
TCTGGTTGGGGCTCTCCTGA+TGG | 0.432980 | 1.4:+62122159 | MS.gene004846:CDS |
TGATGCAATCACATTTGAAT+TGG | 0.437985 | 1.4:-62122013 | None:intergenic |
TATATTCCATTCTTTATGTC+AGG | 0.439563 | 1.4:-62121229 | None:intergenic |
AGTGCCCCTTTGTTCATCCT+GGG | 0.442388 | 1.4:+62121326 | MS.gene004846:CDS |
AACAAAGCAGCAACCATAAG+AGG | 0.442942 | 1.4:-62120830 | None:intergenic |
ACCGAGCGTGCGGCTCAGAT+AGG | 0.449079 | 1.4:+62120906 | MS.gene004846:CDS |
ATTGAGTTCATTGCCGGGGA+TGG | 0.450856 | 1.4:-62122196 | None:intergenic |
TTCTGCTAGCTCAGTTGCCA+TGG | 0.451503 | 1.4:+62122122 | MS.gene004846:CDS |
AAGGTTGGATCAAAAGAAAT+GGG | 0.451915 | 1.4:+62120791 | MS.gene004846:CDS |
TCGGTTTCTAAGAGTATCTT+CGG | 0.453417 | 1.4:+62121061 | MS.gene004846:CDS |
GGAAGGGATCATGCAACAAA+GGG | 0.458959 | 1.4:+62121413 | MS.gene004846:CDS |
ACTCCTGCAAGCCTATTTGA+AGG | 0.462316 | 1.4:-62121880 | None:intergenic |
TTATGGTATGGAAGGAAGGT+TGG | 0.462581 | 1.4:+62120776 | MS.gene004846:CDS |
TTGATTAGGGAAAATGAAAG+TGG | 0.475621 | 1.4:+62120635 | MS.gene004846:CDS |
CATGATCCCTTCCGAAACTC+AGG | 0.476678 | 1.4:-62121403 | None:intergenic |
CCCTATCTGAGCCGCACGCT+CGG | 0.476697 | 1.4:-62120907 | None:intergenic |
GTTGATTCACTTGTGAATGA+TGG | 0.479955 | 1.4:+62122312 | MS.gene004846:CDS |
TCCATTCTTTATGTCAGGTA+GGG | 0.481887 | 1.4:-62121224 | None:intergenic |
TTCTTTATGTCAGGTAGGGA+TGG | 0.483088 | 1.4:-62121220 | None:intergenic |
TACAACGGTCGAAGCTCCTC+TGG | 0.485266 | 1.4:-62121556 | None:intergenic |
GCAGCATCATCGCCTACGGC+TGG | 0.487982 | 1.4:+62121715 | MS.gene004846:CDS |
CGACCGTTGTATGCTTCTAC+CGG | 0.490079 | 1.4:+62121568 | MS.gene004846:CDS |
GAAAATAGGTTTCCAAATGG+TGG | 0.491205 | 1.4:+62121141 | MS.gene004846:CDS |
CTTCTCGGCATCTGAAGGGT+AGG | 0.494265 | 1.4:-62121778 | None:intergenic |
GTTAGTTCCGCCGATGCAAA+CGG | 0.495414 | 1.4:+62121013 | MS.gene004846:CDS |
ATCTGCTTCTCGGCATCTGA+AGG | 0.497474 | 1.4:-62121783 | None:intergenic |
AGCCTTGTTCTGTATTGAGC+AGG | 0.498591 | 1.4:-62121481 | None:intergenic |
GGGTGAAGGTAGAGCAGAAC+CGG | 0.500946 | 1.4:-62121587 | None:intergenic |
CCGGTTACCGTTTGCATCGG+CGG | 0.501616 | 1.4:-62121020 | None:intergenic |
CCCTTGCCCTGAGTTTCGGA+AGG | 0.503997 | 1.4:+62121396 | MS.gene004846:CDS |
AGGGTTATGGTATGGAAGGA+AGG | 0.505824 | 1.4:+62120772 | MS.gene004846:CDS |
TCCCTACCTGACATAAAGAA+TGG | 0.512480 | 1.4:+62121223 | MS.gene004846:CDS |
TAAGAAAATAGGTTTCCAAA+TGG | 0.517234 | 1.4:+62121138 | MS.gene004846:CDS |
CAAAGTGAAGCCTTGTTCAA+GGG | 0.517860 | 1.4:+62121282 | MS.gene004846:CDS |
GCTTTGGCTCCGCTTCGAAA+AGG | 0.520561 | 1.4:-62122055 | None:intergenic |
AAGTAGGGTTATGGTATGGA+AGG | 0.522426 | 1.4:+62120768 | MS.gene004846:CDS |
GTGCAGTGACTTGATTGTCT+CGG | 0.522663 | 1.4:+62121042 | MS.gene004846:CDS |
CCCTTCCGAAACTCAGGGCA+AGG | 0.525679 | 1.4:-62121397 | None:intergenic |
GATCATGATGTTGATGAAGT+AGG | 0.526063 | 1.4:+62120752 | MS.gene004846:CDS |
ATGTTGATGAAGTAGGGTTA+TGG | 0.527912 | 1.4:+62120759 | MS.gene004846:CDS |
GTATCTTCGGTTCAAGGAAG+AGG | 0.528667 | 1.4:+62121074 | MS.gene004846:CDS |
GCTGCTTTGTTTGGAAGCAA+GGG | 0.529208 | 1.4:+62120842 | MS.gene004846:CDS |
ATCATGATGTTGATGAAGTA+GGG | 0.530587 | 1.4:+62120753 | MS.gene004846:CDS |
AAGGAGATGCAAGACCTGTA+AGG | 0.541933 | 1.4:-62121861 | None:intergenic |
AGGAGAGCCCCAACCAGAGA+AGG | 0.547335 | 1.4:-62122154 | None:intergenic |
CCGAGCGTGCGGCTCAGATA+GGG | 0.547437 | 1.4:+62120907 | MS.gene004846:CDS |
CTCCTGATGGAAAATTAGAC+TGG | 0.548612 | 1.4:+62122172 | MS.gene004846:CDS |
CGGAAGGGATCATGCAACAA+AGG | 0.550435 | 1.4:+62121412 | MS.gene004846:CDS |
CAGAAGTAGCACTTCAACAA+TGG | 0.550435 | 1.4:+62122236 | MS.gene004846:CDS |
TTCTCGGCATCTGAAGGGTA+GGG | 0.550744 | 1.4:-62121777 | None:intergenic |
TTCATCCTGGGGAAAATGCA+AGG | 0.557730 | 1.4:+62121338 | MS.gene004846:CDS |
TCGGTTAACATCAACGCGGC+CGG | 0.559271 | 1.4:-62120888 | None:intergenic |
ATCTGCAGCATCATCGCCTA+CGG | 0.562339 | 1.4:+62121711 | MS.gene004846:CDS |
AAATTAGACTGGTCCATCCC+CGG | 0.564430 | 1.4:+62122183 | MS.gene004846:CDS |
GCACCGGTTACCGTTTGCAT+CGG | 0.566282 | 1.4:-62121023 | None:intergenic |
GGTGAATTTGAATATGATGT+GGG | 0.570481 | 1.4:-62121607 | None:intergenic |
GCAATGAACTCAATAAAATG+AGG | 0.575881 | 1.4:+62122205 | MS.gene004846:CDS |
TTCCATTCTTTATGTCAGGT+AGG | 0.576271 | 1.4:-62121225 | None:intergenic |
GTGCCCCTTTGTTCATCCTG+GGG | 0.580017 | 1.4:+62121327 | MS.gene004846:CDS |
CATGTGTAATGATATTTCAT+CGG | 0.580467 | 1.4:-62121370 | None:intergenic |
ATGAAACCAGATGCATGAGA+AGG | 0.586951 | 1.4:+62121512 | MS.gene004846:CDS |
CTAATCAAACCAGTTTGACA+AGG | 0.588552 | 1.4:-62120620 | None:intergenic |
AGAGAAGGCAGAAGGTTCCA+TGG | 0.589015 | 1.4:-62122139 | None:intergenic |
TGAAACCAGATGCATGAGAA+GGG | 0.591472 | 1.4:+62121513 | MS.gene004846:CDS |
TTGTTCTGCTGCTTCTGCCG+AGG | 0.591938 | 1.4:+62120958 | MS.gene004846:CDS |
CCCCAACCAGAGAAGGCAGA+AGG | 0.594817 | 1.4:-62122147 | None:intergenic |
CCTTGCCCTGAGTTTCGGAA+GGG | 0.598605 | 1.4:+62121397 | MS.gene004846:CDS |
ATACAGAACAAGGCTTTGCA+AGG | 0.598747 | 1.4:+62121489 | MS.gene004846:CDS |
GTAGGCGATGATGCTGCAGA+TGG | 0.600318 | 1.4:-62121709 | None:intergenic |
TGCCACATGGTTCCAGCCGT+AGG | 0.601454 | 1.4:-62121727 | None:intergenic |
TGATGCACTTGTATTGATGT+CGG | 0.604850 | 1.4:-62121949 | None:intergenic |
GATGAAGTAGGGTTATGGTA+TGG | 0.604921 | 1.4:+62120764 | MS.gene004846:CDS |
GAATCCATTGAAGAAGCACT+TGG | 0.606204 | 1.4:-62121628 | None:intergenic |
GTGGAGCAACAACAAGATGT+AGG | 0.606526 | 1.4:+62121160 | MS.gene004846:CDS |
TTGGCTGAAAACTCAAGCAA+AGG | 0.608890 | 1.4:-62120689 | None:intergenic |
TGGTGAATTTGAATATGATG+TGG | 0.620600 | 1.4:-62121608 | None:intergenic |
TCTGCTTCTCGGCATCTGAA+GGG | 0.621299 | 1.4:-62121782 | None:intergenic |
ATGGCAACTGAGCTAGCAGA+AGG | 0.621567 | 1.4:-62122120 | None:intergenic |
TGAGTATAAGCCCTTGAACA+AGG | 0.624893 | 1.4:-62121292 | None:intergenic |
AAGAAATGGGATATGAAGAG+AGG | 0.624986 | 1.4:+62120804 | MS.gene004846:CDS |
AACGCAAACCAGCAACTTTG+GGG | 0.627454 | 1.4:+62121973 | MS.gene004846:CDS |
AAAACAAAAGTCATGTGCAA+CGG | 0.630659 | 1.4:+62120584 | None:intergenic |
AAGCAAAAGTTTGACAACCT+CGG | 0.631058 | 1.4:-62120975 | None:intergenic |
ATCCTGCTCAATACAGAACA+AGG | 0.635511 | 1.4:+62121479 | MS.gene004846:CDS |
AATGATATTTCATCGGATCA+CGG | 0.635978 | 1.4:-62121363 | None:intergenic |
CTGAATCTGAGTCTGCCACA+TGG | 0.636502 | 1.4:-62121740 | None:intergenic |
TTTGAATATGATGTGGGTGA+AGG | 0.636666 | 1.4:-62121601 | None:intergenic |
TGTGAATGATGGTCCAACAA+TGG | 0.642483 | 1.4:+62122323 | MS.gene004846:CDS |
GCAGATTGTATCAAAGAAGA+CGG | 0.643659 | 1.4:-62121667 | None:intergenic |
CCTTCCGAAACTCAGGGCAA+GGG | 0.646387 | 1.4:-62121396 | None:intergenic |
AGACAATCAAGTCACTGCAC+CGG | 0.647436 | 1.4:-62121039 | None:intergenic |
GTTGATGTTAACCGAGCGTG+CGG | 0.649710 | 1.4:+62120896 | MS.gene004846:CDS |
GATGCTGCAGATGGAGTCAA+AGG | 0.650089 | 1.4:-62121700 | None:intergenic |
ATGATCCCTTCCGAAACTCA+GGG | 0.652947 | 1.4:-62121402 | None:intergenic |
TCAAGGAAGAGGATACTACA+AGG | 0.674650 | 1.4:+62121085 | MS.gene004846:CDS |
ACAAGGCAATGTTGATGACG+AGG | 0.685237 | 1.4:+62121102 | MS.gene004846:CDS |
CGCCTACGGCTGGAACCATG+TGG | 0.694097 | 1.4:+62121725 | MS.gene004846:CDS |
GCTGCAGATGGAGTCAAAGG+TGG | 0.696337 | 1.4:-62121697 | None:intergenic |
TTTCCCCAGGATGAACAAAG+GGG | 0.706386 | 1.4:-62121330 | None:intergenic |
GAAGGGATCATGCAACAAAG+GGG | 0.715610 | 1.4:+62121414 | MS.gene004846:CDS |
AGAAACAGCACAATGAAGAG+CGG | 0.722067 | 1.4:-62120933 | None:intergenic |
GATGCTTGTGAATATGCACA+TGG | 0.754358 | 1.4:+62121436 | MS.gene004846:CDS |
GAACCGGTAGAAGCATACAA+CGG | 0.780700 | 1.4:-62121571 | None:intergenic |
ACGCTCGGTTAACATCAACG+CGG | 0.858999 | 1.4:-62120892 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATAGTACAGATGAATTT+AGG | + | chr1.4:62121248-62121267 | MS.gene004846:CDS | 20.0% |
! | CATGTGTAATGATATTTCAT+CGG | - | chr1.4:62121373-62121392 | None:intergenic | 25.0% |
! | TAAGAAAATAGGTTTCCAAA+TGG | + | chr1.4:62121138-62121157 | MS.gene004846:CDS | 25.0% |
! | TATATTCCATTCTTTATGTC+AGG | - | chr1.4:62121232-62121251 | None:intergenic | 25.0% |
! | TCATGGCTTAAAAATATATC+TGG | - | chr1.4:62122285-62122304 | None:intergenic | 25.0% |
! | TTTGAATTGGTAAGATCAAA+AGG | - | chr1.4:62122003-62122022 | None:intergenic | 25.0% |
!! | ACTAACCTTGAAAACATTTT+CGG | + | chr1.4:62121910-62121929 | MS.gene004846:CDS | 25.0% |
!! | TTTGGAAACCTATTTTCTTA+AGG | - | chr1.4:62121138-62121157 | None:intergenic | 25.0% |
!!! | AAAATGTTTTCAAGGTTAGT+AGG | - | chr1.4:62121910-62121929 | None:intergenic | 25.0% |
!!! | ATTTTTAAGCCATGAATCTT+GGG | + | chr1.4:62122290-62122309 | MS.gene004846:CDS | 25.0% |
!!! | TATTTTTAAGCCATGAATCT+TGG | + | chr1.4:62122289-62122308 | MS.gene004846:CDS | 25.0% |
AAGGTTGGATCAAAAGAAAT+GGG | + | chr1.4:62120791-62120810 | MS.gene004846:CDS | 30.0% | |
AATAGAAAACCTTGTCAAAC+TGG | + | chr1.4:62120611-62120630 | MS.gene004846:CDS | 30.0% | |
AATGATATTTCATCGGATCA+CGG | - | chr1.4:62121366-62121385 | None:intergenic | 30.0% | |
GACGATTTCCTTAAGAAAAT+AGG | + | chr1.4:62121127-62121146 | MS.gene004846:CDS | 30.0% | |
GCAATGAACTCAATAAAATG+AGG | + | chr1.4:62122205-62122224 | MS.gene004846:CDS | 30.0% | |
GGTGAATTTGAATATGATGT+GGG | - | chr1.4:62121610-62121629 | None:intergenic | 30.0% | |
TGATGCAATCACATTTGAAT+TGG | - | chr1.4:62122016-62122035 | None:intergenic | 30.0% | |
TGGTGAATTTGAATATGATG+TGG | - | chr1.4:62121611-62121630 | None:intergenic | 30.0% | |
TGTTGATCAAATTCCATTGT+TGG | - | chr1.4:62122339-62122358 | None:intergenic | 30.0% | |
TTCAGCCAAAGATGATATAA+TGG | + | chr1.4:62120703-62120722 | MS.gene004846:CDS | 30.0% | |
TTGATTAGGGAAAATGAAAG+TGG | + | chr1.4:62120635-62120654 | MS.gene004846:CDS | 30.0% | |
TTGTCTTATATTCTTGGAAC+CGG | + | chr1.4:62120869-62120888 | MS.gene004846:CDS | 30.0% | |
! | ATCATGATGTTGATGAAGTA+GGG | + | chr1.4:62120753-62120772 | MS.gene004846:CDS | 30.0% |
! | ATTTTATTGAGTTCATTGCC+GGG | - | chr1.4:62122204-62122223 | None:intergenic | 30.0% |
! | CATTTTATTGAGTTCATTGC+CGG | - | chr1.4:62122205-62122224 | None:intergenic | 30.0% |
! | CTAACCTTGAAAACATTTTC+GGG | + | chr1.4:62121911-62121930 | MS.gene004846:CDS | 30.0% |
!! | CACATGGTATTTTTGAATGT+TGG | + | chr1.4:62121452-62121471 | MS.gene004846:CDS | 30.0% |
!! | TTGTCAAACTGGTTTGATTA+GGG | + | chr1.4:62120622-62120641 | MS.gene004846:CDS | 30.0% |
AAGAAATGGGATATGAAGAG+AGG | + | chr1.4:62120804-62120823 | MS.gene004846:CDS | 35.0% | |
AAGCAAAAGTTTGACAACCT+CGG | - | chr1.4:62120978-62120997 | None:intergenic | 35.0% | |
CTAATCAAACCAGTTTGACA+AGG | - | chr1.4:62120623-62120642 | None:intergenic | 35.0% | |
GAAAATAGGTTTCCAAATGG+TGG | + | chr1.4:62121141-62121160 | MS.gene004846:CDS | 35.0% | |
GAACGCCATTATATCATCTT+TGG | - | chr1.4:62120711-62120730 | None:intergenic | 35.0% | |
GAAGGTTGGATCAAAAGAAA+TGG | + | chr1.4:62120790-62120809 | MS.gene004846:CDS | 35.0% | |
GCAGATTGTATCAAAGAAGA+CGG | - | chr1.4:62121670-62121689 | None:intergenic | 35.0% | |
GGTGTGTTGTCTTATATTCT+TGG | + | chr1.4:62120863-62120882 | MS.gene004846:CDS | 35.0% | |
TCCATTCTTTATGTCAGGTA+GGG | - | chr1.4:62121227-62121246 | None:intergenic | 35.0% | |
TTCCATTCTTTATGTCAGGT+AGG | - | chr1.4:62121228-62121247 | None:intergenic | 35.0% | |
TTTGAATATGATGTGGGTGA+AGG | - | chr1.4:62121604-62121623 | None:intergenic | 35.0% | |
! | ATGACCCGAAAATGTTTTCA+AGG | - | chr1.4:62121918-62121937 | None:intergenic | 35.0% |
! | ATGTTGATGAAGTAGGGTTA+TGG | + | chr1.4:62120759-62120778 | MS.gene004846:CDS | 35.0% |
! | GATCATGATGTTGATGAAGT+AGG | + | chr1.4:62120752-62120771 | MS.gene004846:CDS | 35.0% |
! | GTTGATTCACTTGTGAATGA+TGG | + | chr1.4:62122312-62122331 | MS.gene004846:CDS | 35.0% |
! | TGATGCACTTGTATTGATGT+CGG | - | chr1.4:62121952-62121971 | None:intergenic | 35.0% |
! | TTTTATTGAGTTCATTGCCG+GGG | - | chr1.4:62122203-62122222 | None:intergenic | 35.0% |
!! | CTTGTCAAACTGGTTTGATT+AGG | + | chr1.4:62120621-62120640 | MS.gene004846:CDS | 35.0% |
!! | TCGGTTTCTAAGAGTATCTT+CGG | + | chr1.4:62121061-62121080 | MS.gene004846:CDS | 35.0% |
!!! | GCAGTTTTAAATCTGCTTCT+CGG | - | chr1.4:62121796-62121815 | None:intergenic | 35.0% |
AACAAAGCAGCAACCATAAG+AGG | - | chr1.4:62120833-62120852 | None:intergenic | 40.0% | |
AAGTAGGGTTATGGTATGGA+AGG | + | chr1.4:62120768-62120787 | MS.gene004846:CDS | 40.0% | |
AGAAACAGCACAATGAAGAG+CGG | - | chr1.4:62120936-62120955 | None:intergenic | 40.0% | |
ATACAGAACAAGGCTTTGCA+AGG | + | chr1.4:62121489-62121508 | MS.gene004846:CDS | 40.0% | |
ATCCTGCTCAATACAGAACA+AGG | + | chr1.4:62121479-62121498 | MS.gene004846:CDS | 40.0% | |
ATGAAACCAGATGCATGAGA+AGG | + | chr1.4:62121512-62121531 | MS.gene004846:CDS | 40.0% | |
CAAGGGCTTATACTCATGAT+TGG | + | chr1.4:62121299-62121318 | MS.gene004846:CDS | 40.0% | |
CAGAAGTAGCACTTCAACAA+TGG | + | chr1.4:62122236-62122255 | MS.gene004846:CDS | 40.0% | |
CTCCTGATGGAAAATTAGAC+TGG | + | chr1.4:62122172-62122191 | MS.gene004846:CDS | 40.0% | |
GAACTTGAAAATCGCCTTAC+AGG | + | chr1.4:62121847-62121866 | MS.gene004846:CDS | 40.0% | |
GATGAAGTAGGGTTATGGTA+TGG | + | chr1.4:62120764-62120783 | MS.gene004846:CDS | 40.0% | |
GATGCTTGTGAATATGCACA+TGG | + | chr1.4:62121436-62121455 | MS.gene004846:CDS | 40.0% | |
GTCTTGCATCTCCTTCAAAT+AGG | + | chr1.4:62121869-62121888 | MS.gene004846:CDS | 40.0% | |
GTGAATCAACCCAAGATTCA+TGG | - | chr1.4:62122302-62122321 | None:intergenic | 40.0% | |
TCAAGGAAGAGGATACTACA+AGG | + | chr1.4:62121085-62121104 | MS.gene004846:CDS | 40.0% | |
TCCCTACCTGACATAAAGAA+TGG | + | chr1.4:62121223-62121242 | MS.gene004846:CDS | 40.0% | |
TGAAACCAGATGCATGAGAA+GGG | + | chr1.4:62121513-62121532 | MS.gene004846:CDS | 40.0% | |
TGAGTATAAGCCCTTGAACA+AGG | - | chr1.4:62121295-62121314 | None:intergenic | 40.0% | |
TGTGAATGATGGTCCAACAA+TGG | + | chr1.4:62122323-62122342 | MS.gene004846:CDS | 40.0% | |
TGTTGCGCTCAATAAAGCTT+TGG | - | chr1.4:62122074-62122093 | None:intergenic | 40.0% | |
TTATGGTATGGAAGGAAGGT+TGG | + | chr1.4:62120776-62120795 | MS.gene004846:CDS | 40.0% | |
TTCACCAAGTGCTTCTTCAA+TGG | + | chr1.4:62121624-62121643 | MS.gene004846:CDS | 40.0% | |
TTCTTTATGTCAGGTAGGGA+TGG | - | chr1.4:62121223-62121242 | None:intergenic | 40.0% | |
TTGGCTGAAAACTCAAGCAA+AGG | - | chr1.4:62120692-62120711 | None:intergenic | 40.0% | |
! | ATTTTCCCCAGGATGAACAA+AGG | - | chr1.4:62121335-62121354 | None:intergenic | 40.0% |
! | GACCAGTCTAATTTTCCATC+AGG | - | chr1.4:62122177-62122196 | None:intergenic | 40.0% |
! | TTTTCCCCAGGATGAACAAA+GGG | - | chr1.4:62121334-62121353 | None:intergenic | 40.0% |
!! | CAAAGTGAAGCCTTGTTCAA+GGG | + | chr1.4:62121282-62121301 | MS.gene004846:CDS | 40.0% |
!! | CTAAGAGTATCTTCGGTTCA+AGG | + | chr1.4:62121068-62121087 | MS.gene004846:CDS | 40.0% |
!! | CTTATGGTTGCTGCTTTGTT+TGG | + | chr1.4:62120833-62120852 | MS.gene004846:CDS | 40.0% |
!! | GAATCCATTGAAGAAGCACT+TGG | - | chr1.4:62121631-62121650 | None:intergenic | 40.0% |
!! | TCAAAGTGAAGCCTTGTTCA+AGG | + | chr1.4:62121281-62121300 | MS.gene004846:CDS | 40.0% |
AACGCAAACCAGCAACTTTG+GGG | + | chr1.4:62121973-62121992 | MS.gene004846:CDS | 45.0% | |
AAGGAGATGCAAGACCTGTA+AGG | - | chr1.4:62121864-62121883 | None:intergenic | 45.0% | |
ACTCCTGCAAGCCTATTTGA+AGG | - | chr1.4:62121883-62121902 | None:intergenic | 45.0% | |
AGAACGCAAACCAGCAACTT+TGG | + | chr1.4:62121971-62121990 | MS.gene004846:CDS | 45.0% | |
AGACAATCAAGTCACTGCAC+CGG | - | chr1.4:62121042-62121061 | None:intergenic | 45.0% | |
AGGGTTATGGTATGGAAGGA+AGG | + | chr1.4:62120772-62120791 | MS.gene004846:CDS | 45.0% | |
ATGATCCCTTCCGAAACTCA+GGG | - | chr1.4:62121405-62121424 | None:intergenic | 45.0% | |
GAACGCAAACCAGCAACTTT+GGG | + | chr1.4:62121972-62121991 | MS.gene004846:CDS | 45.0% | |
GAAGGGATCATGCAACAAAG+GGG | + | chr1.4:62121414-62121433 | MS.gene004846:CDS | 45.0% | |
GGAAGGGATCATGCAACAAA+GGG | + | chr1.4:62121413-62121432 | MS.gene004846:CDS | 45.0% | |
GTATCTTCGGTTCAAGGAAG+AGG | + | chr1.4:62121074-62121093 | MS.gene004846:CDS | 45.0% | |
GTGCAGTGACTTGATTGTCT+CGG | + | chr1.4:62121042-62121061 | MS.gene004846:CDS | 45.0% | |
GTGGAGCAACAACAAGATGT+AGG | + | chr1.4:62121160-62121179 | MS.gene004846:CDS | 45.0% | |
TCTCCTTCAAATAGGCTTGC+AGG | + | chr1.4:62121877-62121896 | MS.gene004846:CDS | 45.0% | |
TGAAGAGAGGACACCTCTTA+TGG | + | chr1.4:62120817-62120836 | MS.gene004846:CDS | 45.0% | |
TTCATCCTGGGGAAAATGCA+AGG | + | chr1.4:62121338-62121357 | MS.gene004846:CDS | 45.0% | |
TTTCCCCAGGATGAACAAAG+GGG | - | chr1.4:62121333-62121352 | None:intergenic | 45.0% | |
! | AAATTAGACTGGTCCATCCC+CGG | + | chr1.4:62122183-62122202 | MS.gene004846:CDS | 45.0% |
! | GAACCGGTAGAAGCATACAA+CGG | - | chr1.4:62121574-62121593 | None:intergenic | 45.0% |
!! | ACAAGGCAATGTTGATGACG+AGG | + | chr1.4:62121102-62121121 | MS.gene004846:CDS | 45.0% |
!! | AGCCTTGTTCTGTATTGAGC+AGG | - | chr1.4:62121484-62121503 | None:intergenic | 45.0% |
!! | CTTGTTGTTGCTCCACCATT+TGG | - | chr1.4:62121156-62121175 | None:intergenic | 45.0% |
!! | CTTTTTCGCTCACAAACCAG+AGG | + | chr1.4:62121540-62121559 | MS.gene004846:CDS | 45.0% |
!! | GCTCTTCATTGTGCTGTTTC+TGG | + | chr1.4:62120935-62120954 | MS.gene004846:CDS | 45.0% |
!! | GCTGCTTTGTTTGGAAGCAA+GGG | + | chr1.4:62120842-62120861 | MS.gene004846:CDS | 45.0% |
!! | TGCTGCTTTGTTTGGAAGCA+AGG | + | chr1.4:62120841-62120860 | MS.gene004846:CDS | 45.0% |
!!! | GAGTTGATGCCTTTTCGAAG+CGG | + | chr1.4:62122046-62122065 | MS.gene004846:CDS | 45.0% |
AACCTTCTGCCTTCTCTGGT+TGG | + | chr1.4:62122145-62122164 | MS.gene004846:CDS | 50.0% | |
AAGGATTGCCCCAAAGTTGC+TGG | - | chr1.4:62121984-62122003 | None:intergenic | 50.0% | |
ACCTTCTGCCTTCTCTGGTT+GGG | + | chr1.4:62122146-62122165 | MS.gene004846:CDS | 50.0% | |
ACGCTCGGTTAACATCAACG+CGG | - | chr1.4:62120895-62120914 | None:intergenic | 50.0% | |
AGAGAAGGCAGAAGGTTCCA+TGG | - | chr1.4:62122142-62122161 | None:intergenic | 50.0% | |
AGTGCCCCTTTGTTCATCCT+GGG | + | chr1.4:62121326-62121345 | MS.gene004846:CDS | 50.0% | |
ATCTGCAGCATCATCGCCTA+CGG | + | chr1.4:62121711-62121730 | MS.gene004846:CDS | 50.0% | |
ATCTGCTTCTCGGCATCTGA+AGG | - | chr1.4:62121786-62121805 | None:intergenic | 50.0% | |
ATGGAACCTTCTGCCTTCTC+TGG | + | chr1.4:62122141-62122160 | MS.gene004846:CDS | 50.0% | |
ATGGCAACTGAGCTAGCAGA+AGG | - | chr1.4:62122123-62122142 | None:intergenic | 50.0% | |
ATTGAGTTCATTGCCGGGGA+TGG | - | chr1.4:62122199-62122218 | None:intergenic | 50.0% | |
CATGATCCCTTCCGAAACTC+AGG | - | chr1.4:62121406-62121425 | None:intergenic | 50.0% | |
CGACCGTTGTATGCTTCTAC+CGG | + | chr1.4:62121568-62121587 | MS.gene004846:CDS | 50.0% | |
CGGAAGGGATCATGCAACAA+AGG | + | chr1.4:62121412-62121431 | MS.gene004846:CDS | 50.0% | |
CTGAATCTGAGTCTGCCACA+TGG | - | chr1.4:62121743-62121762 | None:intergenic | 50.0% | |
GATGCTGCAGATGGAGTCAA+AGG | - | chr1.4:62121703-62121722 | None:intergenic | 50.0% | |
GCAAACCCTTCTCATGCATC+TGG | - | chr1.4:62121521-62121540 | None:intergenic | 50.0% | |
GTTAGTTCCGCCGATGCAAA+CGG | + | chr1.4:62121013-62121032 | MS.gene004846:CDS | 50.0% | |
GTTGATGTTAACCGAGCGTG+CGG | + | chr1.4:62120896-62120915 | MS.gene004846:CDS | 50.0% | |
TCTGCTTCTCGGCATCTGAA+GGG | - | chr1.4:62121785-62121804 | None:intergenic | 50.0% | |
TTCTCGGCATCTGAAGGGTA+GGG | - | chr1.4:62121780-62121799 | None:intergenic | 50.0% | |
TTCTGCTAGCTCAGTTGCCA+TGG | + | chr1.4:62122122-62122141 | MS.gene004846:CDS | 50.0% | |
CCTTCCGAAACTCAGGGCAA+GGG | - | chr1.4:62121399-62121418 | None:intergenic | 55.0% | |
CCTTCTGCCTTCTCTGGTTG+GGG | + | chr1.4:62122147-62122166 | MS.gene004846:CDS | 55.0% | |
CCTTGCCCTGAGTTTCGGAA+GGG | + | chr1.4:62121397-62121416 | MS.gene004846:CDS | 55.0% | |
CTTCTCGGCATCTGAAGGGT+AGG | - | chr1.4:62121781-62121800 | None:intergenic | 55.0% | |
GAGTGCCCCTTTGTTCATCC+TGG | + | chr1.4:62121325-62121344 | MS.gene004846:CDS | 55.0% | |
GCTGCAGATGGAGTCAAAGG+TGG | - | chr1.4:62121700-62121719 | None:intergenic | 55.0% | |
GGGTGAAGGTAGAGCAGAAC+CGG | - | chr1.4:62121590-62121609 | None:intergenic | 55.0% | |
GTAGGCGATGATGCTGCAGA+TGG | - | chr1.4:62121712-62121731 | None:intergenic | 55.0% | |
GTGCCCCTTTGTTCATCCTG+GGG | + | chr1.4:62121327-62121346 | MS.gene004846:CDS | 55.0% | |
GTGTCCCTTGCCCTGAGTTT+CGG | + | chr1.4:62121392-62121411 | MS.gene004846:CDS | 55.0% | |
TACAACGGTCGAAGCTCCTC+TGG | - | chr1.4:62121559-62121578 | None:intergenic | 55.0% | |
TCGGTTAACATCAACGCGGC+CGG | - | chr1.4:62120891-62120910 | None:intergenic | 55.0% | |
! | GCTTTGGCTCCGCTTCGAAA+AGG | - | chr1.4:62122058-62122077 | None:intergenic | 55.0% |
! | TTGTTCTGCTGCTTCTGCCG+AGG | + | chr1.4:62120958-62120977 | MS.gene004846:CDS | 55.0% |
!! | GCACCGGTTACCGTTTGCAT+CGG | - | chr1.4:62121026-62121045 | None:intergenic | 55.0% |
AGGAGAGCCCCAACCAGAGA+AGG | - | chr1.4:62122157-62122176 | None:intergenic | 60.0% | |
CCCCAACCAGAGAAGGCAGA+AGG | - | chr1.4:62122150-62122169 | None:intergenic | 60.0% | |
CCCTTCCGAAACTCAGGGCA+AGG | - | chr1.4:62121400-62121419 | None:intergenic | 60.0% | |
CCCTTGCCCTGAGTTTCGGA+AGG | + | chr1.4:62121396-62121415 | MS.gene004846:CDS | 60.0% | |
CCGCCGATGCAAACGGTAAC+CGG | + | chr1.4:62121020-62121039 | MS.gene004846:CDS | 60.0% | |
CCGGTTACCGTTTGCATCGG+CGG | - | chr1.4:62121023-62121042 | None:intergenic | 60.0% | |
TCTGGTTGGGGCTCTCCTGA+TGG | + | chr1.4:62122159-62122178 | MS.gene004846:CDS | 60.0% | |
TGCCACATGGTTCCAGCCGT+AGG | - | chr1.4:62121730-62121749 | None:intergenic | 60.0% | |
ACCGAGCGTGCGGCTCAGAT+AGG | + | chr1.4:62120906-62120925 | MS.gene004846:CDS | 65.0% | |
CCCTATCTGAGCCGCACGCT+CGG | - | chr1.4:62120910-62120929 | None:intergenic | 65.0% | |
CCGAGCGTGCGGCTCAGATA+GGG | + | chr1.4:62120907-62120926 | MS.gene004846:CDS | 65.0% | |
CGCCTACGGCTGGAACCATG+TGG | + | chr1.4:62121725-62121744 | MS.gene004846:CDS | 65.0% | |
GCAGCATCATCGCCTACGGC+TGG | + | chr1.4:62121715-62121734 | MS.gene004846:CDS | 65.0% | |
! | CGGCGCCTTGCATTTTCCCC+AGG | - | chr1.4:62121346-62121365 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 62120596 | 62122362 | 62120596 | ID=MS.gene004846 |
chr1.4 | mRNA | 62120596 | 62122362 | 62120596 | ID=MS.gene004846.t1;Parent=MS.gene004846 |
chr1.4 | exon | 62120596 | 62122362 | 62120596 | ID=MS.gene004846.t1.exon1;Parent=MS.gene004846.t1 |
chr1.4 | CDS | 62120596 | 62122362 | 62120596 | ID=cds.MS.gene004846.t1;Parent=MS.gene004846.t1 |
Gene Sequence |
Protein sequence |