AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene004846


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004846.t1 MTR_1g075890 81.776 653 54 3 1 588 1 653 0.0 1021
MS.gene004846.t1 MTR_3g464260 70.886 553 78 8 37 588 29 499 0.0 738
MS.gene004846.t1 MTR_3g464280 68.021 566 103 7 1 560 1 494 0.0 697
MS.gene004846.t1 MTR_5g071070 53.630 675 217 15 1 587 1 667 0.0 633
MS.gene004846.t1 MTR_5g071070 53.288 593 183 14 81 587 1 585 0.0 542
MS.gene004846.t1 MTR_5g082830 46.885 642 231 15 28 582 25 643 1.08e-179 524
MS.gene004846.t1 MTR_7g092070 40.582 653 266 16 33 582 47 680 3.71e-142 429
MS.gene004846.t1 MTR_3g070880 44.792 576 193 18 31 579 8 485 2.17e-139 415
MS.gene004846.t1 MTR_3g464290 56.813 433 139 9 177 587 54 460 1.37e-134 401
MS.gene004846.t1 MTR_3g029590 37.874 668 280 19 30 584 42 687 2.74e-127 391
MS.gene004846.t1 MTR_3g464270 54.717 371 133 7 222 578 8 357 1.70e-121 363
MS.gene004846.t1 MTR_1g050438 40.558 466 221 11 33 451 15 471 7.19e-102 320
MS.gene004846.t1 MTR_0728s0020 40.558 466 221 11 33 451 31 487 1.89e-101 320
MS.gene004846.t1 MTR_3g435590 47.091 361 174 5 30 374 29 388 3.08e-101 315
MS.gene004846.t1 MTR_3g435680 41.096 292 136 4 118 378 26 312 1.34e-64 217
MS.gene004846.t1 MTR_8g102100 53.659 164 70 1 219 376 77 240 1.42e-55 192
MS.gene004846.t1 MTR_6g090380 69.159 107 33 0 219 325 99 205 2.80e-53 186
MS.gene004846.t1 MTR_3g103960 60.448 134 51 2 213 344 43 176 9.95e-52 179
MS.gene004846.t1 MTR_2g090605 61.261 111 43 0 223 333 77 187 2.01e-48 174
MS.gene004846.t1 MTR_4g078660 57.944 107 45 0 219 325 56 162 5.26e-47 167
MS.gene004846.t1 MTR_1g081420 75.806 62 8 1 478 532 167 228 5.01e-20 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004846.t1 AT5G58620 49.503 604 239 20 21 579 2 584 0.0 525
MS.gene004846.t1 AT3G55980 46.399 597 252 14 1 579 1 547 1.47e-165 484
MS.gene004846.t1 AT3G55980 46.399 597 252 14 1 579 68 614 1.23e-164 484
MS.gene004846.t1 AT2G40140 46.000 600 258 17 1 579 1 555 1.44e-159 469
MS.gene004846.t1 AT2G40140 46.000 600 258 17 1 579 1 555 1.44e-159 469
MS.gene004846.t1 AT5G12850 41.693 626 261 21 16 547 20 635 4.69e-135 410
MS.gene004846.t1 AT2G41900 46.921 471 183 8 25 447 40 491 8.90e-134 407
MS.gene004846.t1 AT4G29190 42.128 235 101 6 212 435 68 278 7.49e-55 190
MS.gene004846.t1 AT2G19810 62.295 122 44 1 208 327 61 182 3.14e-52 183
MS.gene004846.t1 AT2G25900 58.140 129 54 0 219 347 86 214 5.06e-52 181
MS.gene004846.t1 AT2G25900 58.140 129 54 0 219 347 86 214 5.06e-52 181
MS.gene004846.t1 AT5G07500 60.504 119 47 0 207 325 36 154 7.54e-52 178
MS.gene004846.t1 AT1G03790 50.968 155 68 3 190 340 53 203 1.89e-48 174
MS.gene004846.t1 AT5G44260 56.250 128 51 2 201 327 42 165 5.92e-46 166

Find 141 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTTCATTGTGCTGTTTC+TGG 0.137009 1.4:+62120935 MS.gene004846:CDS
ACCTTCTGCCTTCTCTGGTT+GGG 0.217111 1.4:+62122146 MS.gene004846:CDS
CTTGTCAAACTGGTTTGATT+AGG 0.230886 1.4:+62120621 MS.gene004846:CDS
GGTGTGTTGTCTTATATTCT+TGG 0.275343 1.4:+62120863 MS.gene004846:CDS
GAACGCCATTATATCATCTT+TGG 0.288121 1.4:-62120708 None:intergenic
TTGTCAAACTGGTTTGATTA+GGG 0.297404 1.4:+62120622 MS.gene004846:CDS
GAACTTGAAAATCGCCTTAC+AGG 0.298409 1.4:+62121847 MS.gene004846:CDS
TATATAGTACAGATGAATTT+AGG 0.309340 1.4:+62121248 MS.gene004846:CDS
GACGATTTCCTTAAGAAAAT+AGG 0.314739 1.4:+62121127 MS.gene004846:CDS
CTTGTTGTTGCTCCACCATT+TGG 0.317761 1.4:-62121153 None:intergenic
CTTATGGTTGCTGCTTTGTT+TGG 0.322501 1.4:+62120833 MS.gene004846:CDS
GAGTGCCCCTTTGTTCATCC+TGG 0.343455 1.4:+62121325 MS.gene004846:CDS
GAACGCAAACCAGCAACTTT+GGG 0.343665 1.4:+62121972 MS.gene004846:CDS
GTGTCCCTTGCCCTGAGTTT+CGG 0.346896 1.4:+62121392 MS.gene004846:CDS
AATAGAAAACCTTGTCAAAC+TGG 0.348122 1.4:+62120611 MS.gene004846:CDS
ATGGAACCTTCTGCCTTCTC+TGG 0.354986 1.4:+62122141 MS.gene004846:CDS
TGTTGATCAAATTCCATTGT+TGG 0.356576 1.4:-62122336 None:intergenic
TCTCCTTCAAATAGGCTTGC+AGG 0.358629 1.4:+62121877 MS.gene004846:CDS
AAGGATTGCCCCAAAGTTGC+TGG 0.360358 1.4:-62121981 None:intergenic
TTCAGCCAAAGATGATATAA+TGG 0.367048 1.4:+62120703 MS.gene004846:CDS
AACCTTCTGCCTTCTCTGGT+TGG 0.384069 1.4:+62122145 MS.gene004846:CDS
AGAACGCAAACCAGCAACTT+TGG 0.384644 1.4:+62121971 MS.gene004846:CDS
TTCACCAAGTGCTTCTTCAA+TGG 0.385276 1.4:+62121624 MS.gene004846:CDS
CCGCCGATGCAAACGGTAAC+CGG 0.390815 1.4:+62121020 MS.gene004846:CDS
GAAGGTTGGATCAAAAGAAA+TGG 0.391384 1.4:+62120790 MS.gene004846:CDS
TGAAGAGAGGACACCTCTTA+TGG 0.399251 1.4:+62120817 MS.gene004846:CDS
TTGTCTTATATTCTTGGAAC+CGG 0.399584 1.4:+62120869 MS.gene004846:CDS
GTCTTGCATCTCCTTCAAAT+AGG 0.399881 1.4:+62121869 MS.gene004846:CDS
GTGAATCAACCCAAGATTCA+TGG 0.407246 1.4:-62122299 None:intergenic
TTTGAATTGGTAAGATCAAA+AGG 0.409476 1.4:-62122000 None:intergenic
GCAAACCCTTCTCATGCATC+TGG 0.411034 1.4:-62121518 None:intergenic
TGTTGCGCTCAATAAAGCTT+TGG 0.411592 1.4:-62122071 None:intergenic
CTAAGAGTATCTTCGGTTCA+AGG 0.415813 1.4:+62121068 MS.gene004846:CDS
CCTTCTGCCTTCTCTGGTTG+GGG 0.417819 1.4:+62122147 MS.gene004846:CDS
TCAAAGTGAAGCCTTGTTCA+AGG 0.431149 1.4:+62121281 MS.gene004846:CDS
TGCTGCTTTGTTTGGAAGCA+AGG 0.432478 1.4:+62120841 MS.gene004846:CDS
CAAGGGCTTATACTCATGAT+TGG 0.432695 1.4:+62121299 MS.gene004846:CDS
TCTGGTTGGGGCTCTCCTGA+TGG 0.432980 1.4:+62122159 MS.gene004846:CDS
TGATGCAATCACATTTGAAT+TGG 0.437985 1.4:-62122013 None:intergenic
TATATTCCATTCTTTATGTC+AGG 0.439563 1.4:-62121229 None:intergenic
AGTGCCCCTTTGTTCATCCT+GGG 0.442388 1.4:+62121326 MS.gene004846:CDS
AACAAAGCAGCAACCATAAG+AGG 0.442942 1.4:-62120830 None:intergenic
ACCGAGCGTGCGGCTCAGAT+AGG 0.449079 1.4:+62120906 MS.gene004846:CDS
ATTGAGTTCATTGCCGGGGA+TGG 0.450856 1.4:-62122196 None:intergenic
TTCTGCTAGCTCAGTTGCCA+TGG 0.451503 1.4:+62122122 MS.gene004846:CDS
AAGGTTGGATCAAAAGAAAT+GGG 0.451915 1.4:+62120791 MS.gene004846:CDS
TCGGTTTCTAAGAGTATCTT+CGG 0.453417 1.4:+62121061 MS.gene004846:CDS
GGAAGGGATCATGCAACAAA+GGG 0.458959 1.4:+62121413 MS.gene004846:CDS
ACTCCTGCAAGCCTATTTGA+AGG 0.462316 1.4:-62121880 None:intergenic
TTATGGTATGGAAGGAAGGT+TGG 0.462581 1.4:+62120776 MS.gene004846:CDS
TTGATTAGGGAAAATGAAAG+TGG 0.475621 1.4:+62120635 MS.gene004846:CDS
CATGATCCCTTCCGAAACTC+AGG 0.476678 1.4:-62121403 None:intergenic
CCCTATCTGAGCCGCACGCT+CGG 0.476697 1.4:-62120907 None:intergenic
GTTGATTCACTTGTGAATGA+TGG 0.479955 1.4:+62122312 MS.gene004846:CDS
TCCATTCTTTATGTCAGGTA+GGG 0.481887 1.4:-62121224 None:intergenic
TTCTTTATGTCAGGTAGGGA+TGG 0.483088 1.4:-62121220 None:intergenic
TACAACGGTCGAAGCTCCTC+TGG 0.485266 1.4:-62121556 None:intergenic
GCAGCATCATCGCCTACGGC+TGG 0.487982 1.4:+62121715 MS.gene004846:CDS
CGACCGTTGTATGCTTCTAC+CGG 0.490079 1.4:+62121568 MS.gene004846:CDS
GAAAATAGGTTTCCAAATGG+TGG 0.491205 1.4:+62121141 MS.gene004846:CDS
CTTCTCGGCATCTGAAGGGT+AGG 0.494265 1.4:-62121778 None:intergenic
GTTAGTTCCGCCGATGCAAA+CGG 0.495414 1.4:+62121013 MS.gene004846:CDS
ATCTGCTTCTCGGCATCTGA+AGG 0.497474 1.4:-62121783 None:intergenic
AGCCTTGTTCTGTATTGAGC+AGG 0.498591 1.4:-62121481 None:intergenic
GGGTGAAGGTAGAGCAGAAC+CGG 0.500946 1.4:-62121587 None:intergenic
CCGGTTACCGTTTGCATCGG+CGG 0.501616 1.4:-62121020 None:intergenic
CCCTTGCCCTGAGTTTCGGA+AGG 0.503997 1.4:+62121396 MS.gene004846:CDS
AGGGTTATGGTATGGAAGGA+AGG 0.505824 1.4:+62120772 MS.gene004846:CDS
TCCCTACCTGACATAAAGAA+TGG 0.512480 1.4:+62121223 MS.gene004846:CDS
TAAGAAAATAGGTTTCCAAA+TGG 0.517234 1.4:+62121138 MS.gene004846:CDS
CAAAGTGAAGCCTTGTTCAA+GGG 0.517860 1.4:+62121282 MS.gene004846:CDS
GCTTTGGCTCCGCTTCGAAA+AGG 0.520561 1.4:-62122055 None:intergenic
AAGTAGGGTTATGGTATGGA+AGG 0.522426 1.4:+62120768 MS.gene004846:CDS
GTGCAGTGACTTGATTGTCT+CGG 0.522663 1.4:+62121042 MS.gene004846:CDS
CCCTTCCGAAACTCAGGGCA+AGG 0.525679 1.4:-62121397 None:intergenic
GATCATGATGTTGATGAAGT+AGG 0.526063 1.4:+62120752 MS.gene004846:CDS
ATGTTGATGAAGTAGGGTTA+TGG 0.527912 1.4:+62120759 MS.gene004846:CDS
GTATCTTCGGTTCAAGGAAG+AGG 0.528667 1.4:+62121074 MS.gene004846:CDS
GCTGCTTTGTTTGGAAGCAA+GGG 0.529208 1.4:+62120842 MS.gene004846:CDS
ATCATGATGTTGATGAAGTA+GGG 0.530587 1.4:+62120753 MS.gene004846:CDS
AAGGAGATGCAAGACCTGTA+AGG 0.541933 1.4:-62121861 None:intergenic
AGGAGAGCCCCAACCAGAGA+AGG 0.547335 1.4:-62122154 None:intergenic
CCGAGCGTGCGGCTCAGATA+GGG 0.547437 1.4:+62120907 MS.gene004846:CDS
CTCCTGATGGAAAATTAGAC+TGG 0.548612 1.4:+62122172 MS.gene004846:CDS
CGGAAGGGATCATGCAACAA+AGG 0.550435 1.4:+62121412 MS.gene004846:CDS
CAGAAGTAGCACTTCAACAA+TGG 0.550435 1.4:+62122236 MS.gene004846:CDS
TTCTCGGCATCTGAAGGGTA+GGG 0.550744 1.4:-62121777 None:intergenic
TTCATCCTGGGGAAAATGCA+AGG 0.557730 1.4:+62121338 MS.gene004846:CDS
TCGGTTAACATCAACGCGGC+CGG 0.559271 1.4:-62120888 None:intergenic
ATCTGCAGCATCATCGCCTA+CGG 0.562339 1.4:+62121711 MS.gene004846:CDS
AAATTAGACTGGTCCATCCC+CGG 0.564430 1.4:+62122183 MS.gene004846:CDS
GCACCGGTTACCGTTTGCAT+CGG 0.566282 1.4:-62121023 None:intergenic
GGTGAATTTGAATATGATGT+GGG 0.570481 1.4:-62121607 None:intergenic
GCAATGAACTCAATAAAATG+AGG 0.575881 1.4:+62122205 MS.gene004846:CDS
TTCCATTCTTTATGTCAGGT+AGG 0.576271 1.4:-62121225 None:intergenic
GTGCCCCTTTGTTCATCCTG+GGG 0.580017 1.4:+62121327 MS.gene004846:CDS
CATGTGTAATGATATTTCAT+CGG 0.580467 1.4:-62121370 None:intergenic
ATGAAACCAGATGCATGAGA+AGG 0.586951 1.4:+62121512 MS.gene004846:CDS
CTAATCAAACCAGTTTGACA+AGG 0.588552 1.4:-62120620 None:intergenic
AGAGAAGGCAGAAGGTTCCA+TGG 0.589015 1.4:-62122139 None:intergenic
TGAAACCAGATGCATGAGAA+GGG 0.591472 1.4:+62121513 MS.gene004846:CDS
TTGTTCTGCTGCTTCTGCCG+AGG 0.591938 1.4:+62120958 MS.gene004846:CDS
CCCCAACCAGAGAAGGCAGA+AGG 0.594817 1.4:-62122147 None:intergenic
CCTTGCCCTGAGTTTCGGAA+GGG 0.598605 1.4:+62121397 MS.gene004846:CDS
ATACAGAACAAGGCTTTGCA+AGG 0.598747 1.4:+62121489 MS.gene004846:CDS
GTAGGCGATGATGCTGCAGA+TGG 0.600318 1.4:-62121709 None:intergenic
TGCCACATGGTTCCAGCCGT+AGG 0.601454 1.4:-62121727 None:intergenic
TGATGCACTTGTATTGATGT+CGG 0.604850 1.4:-62121949 None:intergenic
GATGAAGTAGGGTTATGGTA+TGG 0.604921 1.4:+62120764 MS.gene004846:CDS
GAATCCATTGAAGAAGCACT+TGG 0.606204 1.4:-62121628 None:intergenic
GTGGAGCAACAACAAGATGT+AGG 0.606526 1.4:+62121160 MS.gene004846:CDS
TTGGCTGAAAACTCAAGCAA+AGG 0.608890 1.4:-62120689 None:intergenic
TGGTGAATTTGAATATGATG+TGG 0.620600 1.4:-62121608 None:intergenic
TCTGCTTCTCGGCATCTGAA+GGG 0.621299 1.4:-62121782 None:intergenic
ATGGCAACTGAGCTAGCAGA+AGG 0.621567 1.4:-62122120 None:intergenic
TGAGTATAAGCCCTTGAACA+AGG 0.624893 1.4:-62121292 None:intergenic
AAGAAATGGGATATGAAGAG+AGG 0.624986 1.4:+62120804 MS.gene004846:CDS
AACGCAAACCAGCAACTTTG+GGG 0.627454 1.4:+62121973 MS.gene004846:CDS
AAAACAAAAGTCATGTGCAA+CGG 0.630659 1.4:+62120584 None:intergenic
AAGCAAAAGTTTGACAACCT+CGG 0.631058 1.4:-62120975 None:intergenic
ATCCTGCTCAATACAGAACA+AGG 0.635511 1.4:+62121479 MS.gene004846:CDS
AATGATATTTCATCGGATCA+CGG 0.635978 1.4:-62121363 None:intergenic
CTGAATCTGAGTCTGCCACA+TGG 0.636502 1.4:-62121740 None:intergenic
TTTGAATATGATGTGGGTGA+AGG 0.636666 1.4:-62121601 None:intergenic
TGTGAATGATGGTCCAACAA+TGG 0.642483 1.4:+62122323 MS.gene004846:CDS
GCAGATTGTATCAAAGAAGA+CGG 0.643659 1.4:-62121667 None:intergenic
CCTTCCGAAACTCAGGGCAA+GGG 0.646387 1.4:-62121396 None:intergenic
AGACAATCAAGTCACTGCAC+CGG 0.647436 1.4:-62121039 None:intergenic
GTTGATGTTAACCGAGCGTG+CGG 0.649710 1.4:+62120896 MS.gene004846:CDS
GATGCTGCAGATGGAGTCAA+AGG 0.650089 1.4:-62121700 None:intergenic
ATGATCCCTTCCGAAACTCA+GGG 0.652947 1.4:-62121402 None:intergenic
TCAAGGAAGAGGATACTACA+AGG 0.674650 1.4:+62121085 MS.gene004846:CDS
ACAAGGCAATGTTGATGACG+AGG 0.685237 1.4:+62121102 MS.gene004846:CDS
CGCCTACGGCTGGAACCATG+TGG 0.694097 1.4:+62121725 MS.gene004846:CDS
GCTGCAGATGGAGTCAAAGG+TGG 0.696337 1.4:-62121697 None:intergenic
TTTCCCCAGGATGAACAAAG+GGG 0.706386 1.4:-62121330 None:intergenic
GAAGGGATCATGCAACAAAG+GGG 0.715610 1.4:+62121414 MS.gene004846:CDS
AGAAACAGCACAATGAAGAG+CGG 0.722067 1.4:-62120933 None:intergenic
GATGCTTGTGAATATGCACA+TGG 0.754358 1.4:+62121436 MS.gene004846:CDS
GAACCGGTAGAAGCATACAA+CGG 0.780700 1.4:-62121571 None:intergenic
ACGCTCGGTTAACATCAACG+CGG 0.858999 1.4:-62120892 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAGTACAGATGAATTT+AGG + chr1.4:62121248-62121267 MS.gene004846:CDS 20.0%
! CATGTGTAATGATATTTCAT+CGG - chr1.4:62121373-62121392 None:intergenic 25.0%
! TAAGAAAATAGGTTTCCAAA+TGG + chr1.4:62121138-62121157 MS.gene004846:CDS 25.0%
! TATATTCCATTCTTTATGTC+AGG - chr1.4:62121232-62121251 None:intergenic 25.0%
! TCATGGCTTAAAAATATATC+TGG - chr1.4:62122285-62122304 None:intergenic 25.0%
! TTTGAATTGGTAAGATCAAA+AGG - chr1.4:62122003-62122022 None:intergenic 25.0%
!! ACTAACCTTGAAAACATTTT+CGG + chr1.4:62121910-62121929 MS.gene004846:CDS 25.0%
!! TTTGGAAACCTATTTTCTTA+AGG - chr1.4:62121138-62121157 None:intergenic 25.0%
!!! AAAATGTTTTCAAGGTTAGT+AGG - chr1.4:62121910-62121929 None:intergenic 25.0%
!!! ATTTTTAAGCCATGAATCTT+GGG + chr1.4:62122290-62122309 MS.gene004846:CDS 25.0%
!!! TATTTTTAAGCCATGAATCT+TGG + chr1.4:62122289-62122308 MS.gene004846:CDS 25.0%
AAGGTTGGATCAAAAGAAAT+GGG + chr1.4:62120791-62120810 MS.gene004846:CDS 30.0%
AATAGAAAACCTTGTCAAAC+TGG + chr1.4:62120611-62120630 MS.gene004846:CDS 30.0%
AATGATATTTCATCGGATCA+CGG - chr1.4:62121366-62121385 None:intergenic 30.0%
GACGATTTCCTTAAGAAAAT+AGG + chr1.4:62121127-62121146 MS.gene004846:CDS 30.0%
GCAATGAACTCAATAAAATG+AGG + chr1.4:62122205-62122224 MS.gene004846:CDS 30.0%
GGTGAATTTGAATATGATGT+GGG - chr1.4:62121610-62121629 None:intergenic 30.0%
TGATGCAATCACATTTGAAT+TGG - chr1.4:62122016-62122035 None:intergenic 30.0%
TGGTGAATTTGAATATGATG+TGG - chr1.4:62121611-62121630 None:intergenic 30.0%
TGTTGATCAAATTCCATTGT+TGG - chr1.4:62122339-62122358 None:intergenic 30.0%
TTCAGCCAAAGATGATATAA+TGG + chr1.4:62120703-62120722 MS.gene004846:CDS 30.0%
TTGATTAGGGAAAATGAAAG+TGG + chr1.4:62120635-62120654 MS.gene004846:CDS 30.0%
TTGTCTTATATTCTTGGAAC+CGG + chr1.4:62120869-62120888 MS.gene004846:CDS 30.0%
! ATCATGATGTTGATGAAGTA+GGG + chr1.4:62120753-62120772 MS.gene004846:CDS 30.0%
! ATTTTATTGAGTTCATTGCC+GGG - chr1.4:62122204-62122223 None:intergenic 30.0%
! CATTTTATTGAGTTCATTGC+CGG - chr1.4:62122205-62122224 None:intergenic 30.0%
! CTAACCTTGAAAACATTTTC+GGG + chr1.4:62121911-62121930 MS.gene004846:CDS 30.0%
!! CACATGGTATTTTTGAATGT+TGG + chr1.4:62121452-62121471 MS.gene004846:CDS 30.0%
!! TTGTCAAACTGGTTTGATTA+GGG + chr1.4:62120622-62120641 MS.gene004846:CDS 30.0%
AAGAAATGGGATATGAAGAG+AGG + chr1.4:62120804-62120823 MS.gene004846:CDS 35.0%
AAGCAAAAGTTTGACAACCT+CGG - chr1.4:62120978-62120997 None:intergenic 35.0%
CTAATCAAACCAGTTTGACA+AGG - chr1.4:62120623-62120642 None:intergenic 35.0%
GAAAATAGGTTTCCAAATGG+TGG + chr1.4:62121141-62121160 MS.gene004846:CDS 35.0%
GAACGCCATTATATCATCTT+TGG - chr1.4:62120711-62120730 None:intergenic 35.0%
GAAGGTTGGATCAAAAGAAA+TGG + chr1.4:62120790-62120809 MS.gene004846:CDS 35.0%
GCAGATTGTATCAAAGAAGA+CGG - chr1.4:62121670-62121689 None:intergenic 35.0%
GGTGTGTTGTCTTATATTCT+TGG + chr1.4:62120863-62120882 MS.gene004846:CDS 35.0%
TCCATTCTTTATGTCAGGTA+GGG - chr1.4:62121227-62121246 None:intergenic 35.0%
TTCCATTCTTTATGTCAGGT+AGG - chr1.4:62121228-62121247 None:intergenic 35.0%
TTTGAATATGATGTGGGTGA+AGG - chr1.4:62121604-62121623 None:intergenic 35.0%
! ATGACCCGAAAATGTTTTCA+AGG - chr1.4:62121918-62121937 None:intergenic 35.0%
! ATGTTGATGAAGTAGGGTTA+TGG + chr1.4:62120759-62120778 MS.gene004846:CDS 35.0%
! GATCATGATGTTGATGAAGT+AGG + chr1.4:62120752-62120771 MS.gene004846:CDS 35.0%
! GTTGATTCACTTGTGAATGA+TGG + chr1.4:62122312-62122331 MS.gene004846:CDS 35.0%
! TGATGCACTTGTATTGATGT+CGG - chr1.4:62121952-62121971 None:intergenic 35.0%
! TTTTATTGAGTTCATTGCCG+GGG - chr1.4:62122203-62122222 None:intergenic 35.0%
!! CTTGTCAAACTGGTTTGATT+AGG + chr1.4:62120621-62120640 MS.gene004846:CDS 35.0%
!! TCGGTTTCTAAGAGTATCTT+CGG + chr1.4:62121061-62121080 MS.gene004846:CDS 35.0%
!!! GCAGTTTTAAATCTGCTTCT+CGG - chr1.4:62121796-62121815 None:intergenic 35.0%
AACAAAGCAGCAACCATAAG+AGG - chr1.4:62120833-62120852 None:intergenic 40.0%
AAGTAGGGTTATGGTATGGA+AGG + chr1.4:62120768-62120787 MS.gene004846:CDS 40.0%
AGAAACAGCACAATGAAGAG+CGG - chr1.4:62120936-62120955 None:intergenic 40.0%
ATACAGAACAAGGCTTTGCA+AGG + chr1.4:62121489-62121508 MS.gene004846:CDS 40.0%
ATCCTGCTCAATACAGAACA+AGG + chr1.4:62121479-62121498 MS.gene004846:CDS 40.0%
ATGAAACCAGATGCATGAGA+AGG + chr1.4:62121512-62121531 MS.gene004846:CDS 40.0%
CAAGGGCTTATACTCATGAT+TGG + chr1.4:62121299-62121318 MS.gene004846:CDS 40.0%
CAGAAGTAGCACTTCAACAA+TGG + chr1.4:62122236-62122255 MS.gene004846:CDS 40.0%
CTCCTGATGGAAAATTAGAC+TGG + chr1.4:62122172-62122191 MS.gene004846:CDS 40.0%
GAACTTGAAAATCGCCTTAC+AGG + chr1.4:62121847-62121866 MS.gene004846:CDS 40.0%
GATGAAGTAGGGTTATGGTA+TGG + chr1.4:62120764-62120783 MS.gene004846:CDS 40.0%
GATGCTTGTGAATATGCACA+TGG + chr1.4:62121436-62121455 MS.gene004846:CDS 40.0%
GTCTTGCATCTCCTTCAAAT+AGG + chr1.4:62121869-62121888 MS.gene004846:CDS 40.0%
GTGAATCAACCCAAGATTCA+TGG - chr1.4:62122302-62122321 None:intergenic 40.0%
TCAAGGAAGAGGATACTACA+AGG + chr1.4:62121085-62121104 MS.gene004846:CDS 40.0%
TCCCTACCTGACATAAAGAA+TGG + chr1.4:62121223-62121242 MS.gene004846:CDS 40.0%
TGAAACCAGATGCATGAGAA+GGG + chr1.4:62121513-62121532 MS.gene004846:CDS 40.0%
TGAGTATAAGCCCTTGAACA+AGG - chr1.4:62121295-62121314 None:intergenic 40.0%
TGTGAATGATGGTCCAACAA+TGG + chr1.4:62122323-62122342 MS.gene004846:CDS 40.0%
TGTTGCGCTCAATAAAGCTT+TGG - chr1.4:62122074-62122093 None:intergenic 40.0%
TTATGGTATGGAAGGAAGGT+TGG + chr1.4:62120776-62120795 MS.gene004846:CDS 40.0%
TTCACCAAGTGCTTCTTCAA+TGG + chr1.4:62121624-62121643 MS.gene004846:CDS 40.0%
TTCTTTATGTCAGGTAGGGA+TGG - chr1.4:62121223-62121242 None:intergenic 40.0%
TTGGCTGAAAACTCAAGCAA+AGG - chr1.4:62120692-62120711 None:intergenic 40.0%
! ATTTTCCCCAGGATGAACAA+AGG - chr1.4:62121335-62121354 None:intergenic 40.0%
! GACCAGTCTAATTTTCCATC+AGG - chr1.4:62122177-62122196 None:intergenic 40.0%
! TTTTCCCCAGGATGAACAAA+GGG - chr1.4:62121334-62121353 None:intergenic 40.0%
!! CAAAGTGAAGCCTTGTTCAA+GGG + chr1.4:62121282-62121301 MS.gene004846:CDS 40.0%
!! CTAAGAGTATCTTCGGTTCA+AGG + chr1.4:62121068-62121087 MS.gene004846:CDS 40.0%
!! CTTATGGTTGCTGCTTTGTT+TGG + chr1.4:62120833-62120852 MS.gene004846:CDS 40.0%
!! GAATCCATTGAAGAAGCACT+TGG - chr1.4:62121631-62121650 None:intergenic 40.0%
!! TCAAAGTGAAGCCTTGTTCA+AGG + chr1.4:62121281-62121300 MS.gene004846:CDS 40.0%
AACGCAAACCAGCAACTTTG+GGG + chr1.4:62121973-62121992 MS.gene004846:CDS 45.0%
AAGGAGATGCAAGACCTGTA+AGG - chr1.4:62121864-62121883 None:intergenic 45.0%
ACTCCTGCAAGCCTATTTGA+AGG - chr1.4:62121883-62121902 None:intergenic 45.0%
AGAACGCAAACCAGCAACTT+TGG + chr1.4:62121971-62121990 MS.gene004846:CDS 45.0%
AGACAATCAAGTCACTGCAC+CGG - chr1.4:62121042-62121061 None:intergenic 45.0%
AGGGTTATGGTATGGAAGGA+AGG + chr1.4:62120772-62120791 MS.gene004846:CDS 45.0%
ATGATCCCTTCCGAAACTCA+GGG - chr1.4:62121405-62121424 None:intergenic 45.0%
GAACGCAAACCAGCAACTTT+GGG + chr1.4:62121972-62121991 MS.gene004846:CDS 45.0%
GAAGGGATCATGCAACAAAG+GGG + chr1.4:62121414-62121433 MS.gene004846:CDS 45.0%
GGAAGGGATCATGCAACAAA+GGG + chr1.4:62121413-62121432 MS.gene004846:CDS 45.0%
GTATCTTCGGTTCAAGGAAG+AGG + chr1.4:62121074-62121093 MS.gene004846:CDS 45.0%
GTGCAGTGACTTGATTGTCT+CGG + chr1.4:62121042-62121061 MS.gene004846:CDS 45.0%
GTGGAGCAACAACAAGATGT+AGG + chr1.4:62121160-62121179 MS.gene004846:CDS 45.0%
TCTCCTTCAAATAGGCTTGC+AGG + chr1.4:62121877-62121896 MS.gene004846:CDS 45.0%
TGAAGAGAGGACACCTCTTA+TGG + chr1.4:62120817-62120836 MS.gene004846:CDS 45.0%
TTCATCCTGGGGAAAATGCA+AGG + chr1.4:62121338-62121357 MS.gene004846:CDS 45.0%
TTTCCCCAGGATGAACAAAG+GGG - chr1.4:62121333-62121352 None:intergenic 45.0%
! AAATTAGACTGGTCCATCCC+CGG + chr1.4:62122183-62122202 MS.gene004846:CDS 45.0%
! GAACCGGTAGAAGCATACAA+CGG - chr1.4:62121574-62121593 None:intergenic 45.0%
!! ACAAGGCAATGTTGATGACG+AGG + chr1.4:62121102-62121121 MS.gene004846:CDS 45.0%
!! AGCCTTGTTCTGTATTGAGC+AGG - chr1.4:62121484-62121503 None:intergenic 45.0%
!! CTTGTTGTTGCTCCACCATT+TGG - chr1.4:62121156-62121175 None:intergenic 45.0%
!! CTTTTTCGCTCACAAACCAG+AGG + chr1.4:62121540-62121559 MS.gene004846:CDS 45.0%
!! GCTCTTCATTGTGCTGTTTC+TGG + chr1.4:62120935-62120954 MS.gene004846:CDS 45.0%
!! GCTGCTTTGTTTGGAAGCAA+GGG + chr1.4:62120842-62120861 MS.gene004846:CDS 45.0%
!! TGCTGCTTTGTTTGGAAGCA+AGG + chr1.4:62120841-62120860 MS.gene004846:CDS 45.0%
!!! GAGTTGATGCCTTTTCGAAG+CGG + chr1.4:62122046-62122065 MS.gene004846:CDS 45.0%
AACCTTCTGCCTTCTCTGGT+TGG + chr1.4:62122145-62122164 MS.gene004846:CDS 50.0%
AAGGATTGCCCCAAAGTTGC+TGG - chr1.4:62121984-62122003 None:intergenic 50.0%
ACCTTCTGCCTTCTCTGGTT+GGG + chr1.4:62122146-62122165 MS.gene004846:CDS 50.0%
ACGCTCGGTTAACATCAACG+CGG - chr1.4:62120895-62120914 None:intergenic 50.0%
AGAGAAGGCAGAAGGTTCCA+TGG - chr1.4:62122142-62122161 None:intergenic 50.0%
AGTGCCCCTTTGTTCATCCT+GGG + chr1.4:62121326-62121345 MS.gene004846:CDS 50.0%
ATCTGCAGCATCATCGCCTA+CGG + chr1.4:62121711-62121730 MS.gene004846:CDS 50.0%
ATCTGCTTCTCGGCATCTGA+AGG - chr1.4:62121786-62121805 None:intergenic 50.0%
ATGGAACCTTCTGCCTTCTC+TGG + chr1.4:62122141-62122160 MS.gene004846:CDS 50.0%
ATGGCAACTGAGCTAGCAGA+AGG - chr1.4:62122123-62122142 None:intergenic 50.0%
ATTGAGTTCATTGCCGGGGA+TGG - chr1.4:62122199-62122218 None:intergenic 50.0%
CATGATCCCTTCCGAAACTC+AGG - chr1.4:62121406-62121425 None:intergenic 50.0%
CGACCGTTGTATGCTTCTAC+CGG + chr1.4:62121568-62121587 MS.gene004846:CDS 50.0%
CGGAAGGGATCATGCAACAA+AGG + chr1.4:62121412-62121431 MS.gene004846:CDS 50.0%
CTGAATCTGAGTCTGCCACA+TGG - chr1.4:62121743-62121762 None:intergenic 50.0%
GATGCTGCAGATGGAGTCAA+AGG - chr1.4:62121703-62121722 None:intergenic 50.0%
GCAAACCCTTCTCATGCATC+TGG - chr1.4:62121521-62121540 None:intergenic 50.0%
GTTAGTTCCGCCGATGCAAA+CGG + chr1.4:62121013-62121032 MS.gene004846:CDS 50.0%
GTTGATGTTAACCGAGCGTG+CGG + chr1.4:62120896-62120915 MS.gene004846:CDS 50.0%
TCTGCTTCTCGGCATCTGAA+GGG - chr1.4:62121785-62121804 None:intergenic 50.0%
TTCTCGGCATCTGAAGGGTA+GGG - chr1.4:62121780-62121799 None:intergenic 50.0%
TTCTGCTAGCTCAGTTGCCA+TGG + chr1.4:62122122-62122141 MS.gene004846:CDS 50.0%
CCTTCCGAAACTCAGGGCAA+GGG - chr1.4:62121399-62121418 None:intergenic 55.0%
CCTTCTGCCTTCTCTGGTTG+GGG + chr1.4:62122147-62122166 MS.gene004846:CDS 55.0%
CCTTGCCCTGAGTTTCGGAA+GGG + chr1.4:62121397-62121416 MS.gene004846:CDS 55.0%
CTTCTCGGCATCTGAAGGGT+AGG - chr1.4:62121781-62121800 None:intergenic 55.0%
GAGTGCCCCTTTGTTCATCC+TGG + chr1.4:62121325-62121344 MS.gene004846:CDS 55.0%
GCTGCAGATGGAGTCAAAGG+TGG - chr1.4:62121700-62121719 None:intergenic 55.0%
GGGTGAAGGTAGAGCAGAAC+CGG - chr1.4:62121590-62121609 None:intergenic 55.0%
GTAGGCGATGATGCTGCAGA+TGG - chr1.4:62121712-62121731 None:intergenic 55.0%
GTGCCCCTTTGTTCATCCTG+GGG + chr1.4:62121327-62121346 MS.gene004846:CDS 55.0%
GTGTCCCTTGCCCTGAGTTT+CGG + chr1.4:62121392-62121411 MS.gene004846:CDS 55.0%
TACAACGGTCGAAGCTCCTC+TGG - chr1.4:62121559-62121578 None:intergenic 55.0%
TCGGTTAACATCAACGCGGC+CGG - chr1.4:62120891-62120910 None:intergenic 55.0%
! GCTTTGGCTCCGCTTCGAAA+AGG - chr1.4:62122058-62122077 None:intergenic 55.0%
! TTGTTCTGCTGCTTCTGCCG+AGG + chr1.4:62120958-62120977 MS.gene004846:CDS 55.0%
!! GCACCGGTTACCGTTTGCAT+CGG - chr1.4:62121026-62121045 None:intergenic 55.0%
AGGAGAGCCCCAACCAGAGA+AGG - chr1.4:62122157-62122176 None:intergenic 60.0%
CCCCAACCAGAGAAGGCAGA+AGG - chr1.4:62122150-62122169 None:intergenic 60.0%
CCCTTCCGAAACTCAGGGCA+AGG - chr1.4:62121400-62121419 None:intergenic 60.0%
CCCTTGCCCTGAGTTTCGGA+AGG + chr1.4:62121396-62121415 MS.gene004846:CDS 60.0%
CCGCCGATGCAAACGGTAAC+CGG + chr1.4:62121020-62121039 MS.gene004846:CDS 60.0%
CCGGTTACCGTTTGCATCGG+CGG - chr1.4:62121023-62121042 None:intergenic 60.0%
TCTGGTTGGGGCTCTCCTGA+TGG + chr1.4:62122159-62122178 MS.gene004846:CDS 60.0%
TGCCACATGGTTCCAGCCGT+AGG - chr1.4:62121730-62121749 None:intergenic 60.0%
ACCGAGCGTGCGGCTCAGAT+AGG + chr1.4:62120906-62120925 MS.gene004846:CDS 65.0%
CCCTATCTGAGCCGCACGCT+CGG - chr1.4:62120910-62120929 None:intergenic 65.0%
CCGAGCGTGCGGCTCAGATA+GGG + chr1.4:62120907-62120926 MS.gene004846:CDS 65.0%
CGCCTACGGCTGGAACCATG+TGG + chr1.4:62121725-62121744 MS.gene004846:CDS 65.0%
GCAGCATCATCGCCTACGGC+TGG + chr1.4:62121715-62121734 MS.gene004846:CDS 65.0%
! CGGCGCCTTGCATTTTCCCC+AGG - chr1.4:62121346-62121365 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 62120596 62122362 62120596 ID=MS.gene004846
chr1.4 mRNA 62120596 62122362 62120596 ID=MS.gene004846.t1;Parent=MS.gene004846
chr1.4 exon 62120596 62122362 62120596 ID=MS.gene004846.t1.exon1;Parent=MS.gene004846.t1
chr1.4 CDS 62120596 62122362 62120596 ID=cds.MS.gene004846.t1;Parent=MS.gene004846.t1
Gene Sequence

>MS.gene004846

ATGTGCAACGGTTCGAATAGAAAACCTTGTCAAACTGGTTTGATTAGGGAAAATGAAAGTGGAACACAAGAAGAACTTCATCATAAGATTTCACCTTTGCTTGAGTTTTCAGCCAAAGATGATATAATGGCGTTCACAAATGCTGTTGAAAAAGATGATCATGATGTTGATGAAGTAGGGTTATGGTATGGAAGGAAGGTTGGATCAAAAGAAATGGGATATGAAGAGAGGACACCTCTTATGGTTGCTGCTTTGTTTGGAAGCAAGGGTGTGTTGTCTTATATTCTTGGAACCGGCCGCGTTGATGTTAACCGAGCGTGCGGCTCAGATAGGGCTACCGCTCTTCATTGTGCTGTTTCTGGTTGTTCTGCTGCTTCTGCCGAGGTTGTCAAACTTTTGCTTGATGCATCTGCAGATGTTAGTTCCGCCGATGCAAACGGTAACCGGTGCAGTGACTTGATTGTCTCGGTTTCTAAGAGTATCTTCGGTTCAAGGAAGAGGATACTACAAGGCAATGTTGATGACGAGGACGACGATTTCCTTAAGAAAATAGGTTTCCAAATGGTGGAGCAACAACAAGATGTAGGTACATCTCGAACTGAGAAGAAAGATCATCTCATTGATCCATCCCTACCTGACATAAAGAATGGAATATATAGTACAGATGAATTTAGGATGTTTACATTCAAAGTGAAGCCTTGTTCAAGGGCTTATACTCATGATTGGACTGAGTGCCCCTTTGTTCATCCTGGGGAAAATGCAAGGCGCCGTGATCCGATGAAATATCATTACACATGTGTCCCTTGCCCTGAGTTTCGGAAGGGATCATGCAACAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAATGTTGGCTTCATCCTGCTCAATACAGAACAAGGCTTTGCAAGGATGAAACCAGATGCATGAGAAGGGTTTGCTTTTTCGCTCACAAACCAGAGGAGCTTCGACCGTTGTATGCTTCTACCGGTTCTGCTCTACCTTCACCCACATCATATTCAAATTCACCAAGTGCTTCTTCAATGGATTCTTTCACATTGAGCTCTCCGTCTTCTTTGATACAATCTGCGTCGACGCCACCTTTGACTCCATCTGCAGCATCATCGCCTACGGCTGGAACCATGTGGCAGACTCAGATTCAGCTTCATGCTGCAGTCCCTACCCTTCAGATGCCGAGAAGCAGATTTAAAACTGCAATGAATGCTAGAAATAATGCTGAATTTCTCGAACTTGAAAATCGCCTTACAGGTCTTGCATCTCCTTCAAATAGGCTTGCAGGAGTGAATCCTACTAACCTTGAAAACATTTTCGGGTCATCAATACAATCTCCGACATCAATACAAGTGCATCAGAACGCAAACCAGCAACTTTGGGGCAATCCTTTTGATCTTACCAATTCAAATGTGATTGCATCATCACAATTTAGAGTTGATGCCTTTTCGAAGCGGAGCCAAAGCTTTATTGAGCGCAACAGCGTTGCGAGCTTTAATTCTGAGCTTCCTTCTGCTAGCTCAGTTGCCATGGAACCTTCTGCCTTCTCTGGTTGGGGCTCTCCTGATGGAAAATTAGACTGGTCCATCCCCGGCAATGAACTCAATAAAATGAGGAAATCTTACAGAAGTAGCACTTCAACAATGGCTGCTGCATTAAGTGTTAATGATCCAGATATATTTTTAAGCCATGAATCTTGGGTTGATTCACTTGTGAATGATGGTCCAACAATGGAATTTGATCAACATTGA

Protein sequence

>MS.gene004846.t1

MCNGSNRKPCQTGLIRENESGTQEELHHKISPLLEFSAKDDIMAFTNAVEKDDHDVDEVGLWYGRKVGSKEMGYEERTPLMVAALFGSKGVLSYILGTGRVDVNRACGSDRATALHCAVSGCSAASAEVVKLLLDASADVSSADANGNRCSDLIVSVSKSIFGSRKRILQGNVDDEDDDFLKKIGFQMVEQQQDVGTSRTEKKDHLIDPSLPDIKNGIYSTDEFRMFTFKVKPCSRAYTHDWTECPFVHPGENARRRDPMKYHYTCVPCPEFRKGSCNKGDACEYAHGIFECWLHPAQYRTRLCKDETRCMRRVCFFAHKPEELRPLYASTGSALPSPTSYSNSPSASSMDSFTLSSPSSLIQSASTPPLTPSAASSPTAGTMWQTQIQLHAAVPTLQMPRSRFKTAMNARNNAEFLELENRLTGLASPSNRLAGVNPTNLENIFGSSIQSPTSIQVHQNANQQLWGNPFDLTNSNVIASSQFRVDAFSKRSQSFIERNSVASFNSELPSASSVAMEPSAFSGWGSPDGKLDWSIPGNELNKMRKSYRSSTSTMAAALSVNDPDIFLSHESWVDSLVNDGPTMEFDQH